Multiple sequence alignment - TraesCS5B01G193000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G193000 chr5B 100.000 3360 0 0 1 3360 348196261 348199620 0.000000e+00 6205.0
1 TraesCS5B01G193000 chr5B 91.781 73 6 0 596 668 356760094 356760022 5.930000e-18 102.0
2 TraesCS5B01G193000 chr5B 90.411 73 7 0 596 668 422266813 422266741 2.760000e-16 97.1
3 TraesCS5B01G193000 chr5B 89.041 73 8 0 596 668 511074749 511074677 1.280000e-14 91.6
4 TraesCS5B01G193000 chr5A 91.064 2227 117 33 681 2853 394558270 394556072 0.000000e+00 2935.0
5 TraesCS5B01G193000 chr5A 89.388 490 24 11 1 470 394558828 394558347 2.890000e-165 592.0
6 TraesCS5B01G193000 chr5A 89.591 269 18 5 2850 3110 394555970 394555704 1.930000e-87 333.0
7 TraesCS5B01G193000 chr5A 91.892 74 6 0 524 597 664849608 664849535 1.650000e-18 104.0
8 TraesCS5B01G193000 chr5A 92.754 69 3 2 3292 3360 394555374 394555308 7.670000e-17 99.0
9 TraesCS5B01G193000 chr5D 94.742 932 41 7 1603 2529 303425221 303426149 0.000000e+00 1443.0
10 TraesCS5B01G193000 chr5D 92.216 925 46 8 673 1571 303424298 303425222 0.000000e+00 1286.0
11 TraesCS5B01G193000 chr5D 93.530 541 17 6 1 533 303423769 303424299 0.000000e+00 789.0
12 TraesCS5B01G193000 chr5D 90.169 356 26 5 3008 3357 303540937 303541289 3.950000e-124 455.0
13 TraesCS5B01G193000 chr5D 94.444 54 2 1 2714 2767 303432915 303432967 7.730000e-12 82.4
14 TraesCS5B01G193000 chr6A 90.698 86 7 1 512 597 194137059 194136975 2.740000e-21 113.0
15 TraesCS5B01G193000 chr6A 89.535 86 8 1 512 597 376226311 376226227 1.270000e-19 108.0
16 TraesCS5B01G193000 chr3B 94.521 73 4 0 596 668 586860397 586860469 2.740000e-21 113.0
17 TraesCS5B01G193000 chr3B 90.123 81 7 1 589 668 23734022 23733942 1.650000e-18 104.0
18 TraesCS5B01G193000 chr3B 90.411 73 7 0 596 668 564057359 564057287 2.760000e-16 97.1
19 TraesCS5B01G193000 chr1A 90.698 86 7 1 512 597 137153345 137153429 2.740000e-21 113.0
20 TraesCS5B01G193000 chr1A 89.024 82 7 2 518 597 489026081 489026000 2.130000e-17 100.0
21 TraesCS5B01G193000 chr7A 90.909 77 7 0 521 597 165853895 165853971 1.650000e-18 104.0
22 TraesCS5B01G193000 chr7A 87.209 86 10 1 512 597 448058553 448058637 2.760000e-16 97.1
23 TraesCS5B01G193000 chr7A 86.517 89 11 1 510 597 736095419 736095331 2.760000e-16 97.1
24 TraesCS5B01G193000 chr4A 90.909 77 7 0 521 597 557549782 557549858 1.650000e-18 104.0
25 TraesCS5B01G193000 chr4A 100.000 28 0 0 3267 3294 541994438 541994465 6.000000e-03 52.8
26 TraesCS5B01G193000 chr4B 91.781 73 6 0 596 668 54038021 54037949 5.930000e-18 102.0
27 TraesCS5B01G193000 chr4B 96.875 32 0 1 3267 3297 82025686 82025655 6.000000e-03 52.8
28 TraesCS5B01G193000 chr2D 90.411 73 7 0 596 668 536223512 536223584 2.760000e-16 97.1
29 TraesCS5B01G193000 chr2B 90.411 73 7 0 596 668 783157308 783157380 2.760000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G193000 chr5B 348196261 348199620 3359 False 6205.000000 6205 100.00000 1 3360 1 chr5B.!!$F1 3359
1 TraesCS5B01G193000 chr5A 394555308 394558828 3520 True 989.750000 2935 90.69925 1 3360 4 chr5A.!!$R2 3359
2 TraesCS5B01G193000 chr5D 303423769 303426149 2380 False 1172.666667 1443 93.49600 1 2529 3 chr5D.!!$F3 2528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
978 1045 0.179215 GCGCGTTTGATGACTTCCTG 60.179 55.0 8.43 0.0 0.00 3.86 F
1391 1461 0.249911 GCGGAGAGGAAATACGCCAT 60.250 55.0 0.00 0.0 44.01 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2128 2217 1.832366 ACTCTGAGCAGCATCATGACT 59.168 47.619 4.19 0.00 0.00 3.41 R
3315 3740 0.030235 GGCGGTGGTCAAAGTTGAAC 59.970 55.000 1.98 1.98 45.04 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
344 353 0.324183 CCTGCACTCTCTCCCTCTCA 60.324 60.000 0.00 0.00 0.00 3.27
376 385 1.600663 GCACATACATCCGTCCTCTCG 60.601 57.143 0.00 0.00 0.00 4.04
395 404 1.478916 CGTCTTTCTTCTCCCCTCTCC 59.521 57.143 0.00 0.00 0.00 3.71
477 512 1.927174 CTCGAAGGTCGCAATACTTGG 59.073 52.381 0.00 0.00 40.21 3.61
511 548 6.357367 AGAACTTCTTGTGTGTGGTAAGAAT 58.643 36.000 0.00 0.00 39.07 2.40
533 570 9.857957 AGAATTAAGCAGTACACTACTTTCTAC 57.142 33.333 0.34 0.00 36.76 2.59
534 571 9.857957 GAATTAAGCAGTACACTACTTTCTACT 57.142 33.333 0.34 0.00 36.76 2.57
535 572 9.857957 AATTAAGCAGTACACTACTTTCTACTC 57.142 33.333 0.34 0.00 36.76 2.59
536 573 5.900865 AGCAGTACACTACTTTCTACTCC 57.099 43.478 0.00 0.00 36.76 3.85
537 574 5.572252 AGCAGTACACTACTTTCTACTCCT 58.428 41.667 0.00 0.00 36.76 3.69
538 575 6.011481 AGCAGTACACTACTTTCTACTCCTT 58.989 40.000 0.00 0.00 36.76 3.36
539 576 6.151480 AGCAGTACACTACTTTCTACTCCTTC 59.849 42.308 0.00 0.00 36.76 3.46
540 577 6.625520 GCAGTACACTACTTTCTACTCCTTCC 60.626 46.154 0.00 0.00 36.76 3.46
541 578 5.647225 AGTACACTACTTTCTACTCCTTCCG 59.353 44.000 0.00 0.00 34.86 4.30
542 579 4.405548 ACACTACTTTCTACTCCTTCCGT 58.594 43.478 0.00 0.00 0.00 4.69
543 580 4.831710 ACACTACTTTCTACTCCTTCCGTT 59.168 41.667 0.00 0.00 0.00 4.44
544 581 5.048154 ACACTACTTTCTACTCCTTCCGTTC 60.048 44.000 0.00 0.00 0.00 3.95
545 582 3.957591 ACTTTCTACTCCTTCCGTTCC 57.042 47.619 0.00 0.00 0.00 3.62
546 583 3.236896 ACTTTCTACTCCTTCCGTTCCA 58.763 45.455 0.00 0.00 0.00 3.53
547 584 3.644738 ACTTTCTACTCCTTCCGTTCCAA 59.355 43.478 0.00 0.00 0.00 3.53
548 585 4.102054 ACTTTCTACTCCTTCCGTTCCAAA 59.898 41.667 0.00 0.00 0.00 3.28
549 586 4.903045 TTCTACTCCTTCCGTTCCAAAT 57.097 40.909 0.00 0.00 0.00 2.32
550 587 4.903045 TCTACTCCTTCCGTTCCAAATT 57.097 40.909 0.00 0.00 0.00 1.82
551 588 6.363167 TTCTACTCCTTCCGTTCCAAATTA 57.637 37.500 0.00 0.00 0.00 1.40
552 589 5.727434 TCTACTCCTTCCGTTCCAAATTAC 58.273 41.667 0.00 0.00 0.00 1.89
553 590 4.635699 ACTCCTTCCGTTCCAAATTACT 57.364 40.909 0.00 0.00 0.00 2.24
554 591 4.576879 ACTCCTTCCGTTCCAAATTACTC 58.423 43.478 0.00 0.00 0.00 2.59
555 592 3.592059 TCCTTCCGTTCCAAATTACTCG 58.408 45.455 0.00 0.00 0.00 4.18
556 593 3.007182 TCCTTCCGTTCCAAATTACTCGT 59.993 43.478 0.00 0.00 0.00 4.18
557 594 3.370061 CCTTCCGTTCCAAATTACTCGTC 59.630 47.826 0.00 0.00 0.00 4.20
558 595 2.598589 TCCGTTCCAAATTACTCGTCG 58.401 47.619 0.00 0.00 0.00 5.12
559 596 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
560 597 1.722464 CGTTCCAAATTACTCGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
561 598 2.222508 CGTTCCAAATTACTCGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
562 599 2.991190 GTTCCAAATTACTCGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
563 600 3.306917 TCCAAATTACTCGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
564 601 3.655486 TCCAAATTACTCGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
565 602 4.250464 TCCAAATTACTCGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
566 603 4.092821 TCCAAATTACTCGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
567 604 4.334443 CAAATTACTCGTCGCAGAAATGG 58.666 43.478 0.00 0.00 39.69 3.16
568 605 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
569 606 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
570 607 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
571 608 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
572 609 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
573 610 2.535984 CTCGTCGCAGAAATGGATGTAC 59.464 50.000 0.00 0.00 39.69 2.90
574 611 1.593006 CGTCGCAGAAATGGATGTACC 59.407 52.381 0.00 0.00 39.69 3.34
575 612 2.738643 CGTCGCAGAAATGGATGTACCT 60.739 50.000 0.00 0.00 39.69 3.08
576 613 3.490249 CGTCGCAGAAATGGATGTACCTA 60.490 47.826 0.00 0.00 39.69 3.08
577 614 3.802685 GTCGCAGAAATGGATGTACCTAC 59.197 47.826 0.00 0.00 39.69 3.18
578 615 3.449377 TCGCAGAAATGGATGTACCTACA 59.551 43.478 0.00 0.00 40.98 2.74
579 616 4.081365 TCGCAGAAATGGATGTACCTACAA 60.081 41.667 0.00 0.00 39.99 2.41
580 617 4.034048 CGCAGAAATGGATGTACCTACAAC 59.966 45.833 0.00 0.00 39.99 3.32
581 618 5.186198 GCAGAAATGGATGTACCTACAACT 58.814 41.667 0.00 0.00 39.99 3.16
582 619 6.346096 GCAGAAATGGATGTACCTACAACTA 58.654 40.000 0.00 0.00 39.99 2.24
583 620 6.821665 GCAGAAATGGATGTACCTACAACTAA 59.178 38.462 0.00 0.00 39.99 2.24
584 621 7.335924 GCAGAAATGGATGTACCTACAACTAAA 59.664 37.037 0.00 0.00 39.99 1.85
585 622 9.226606 CAGAAATGGATGTACCTACAACTAAAA 57.773 33.333 0.00 0.00 39.99 1.52
586 623 9.975218 AGAAATGGATGTACCTACAACTAAAAT 57.025 29.630 0.00 0.00 39.99 1.82
589 626 8.882415 ATGGATGTACCTACAACTAAAATACG 57.118 34.615 0.00 0.00 39.99 3.06
590 627 7.839907 TGGATGTACCTACAACTAAAATACGT 58.160 34.615 0.00 0.00 39.99 3.57
591 628 8.313292 TGGATGTACCTACAACTAAAATACGTT 58.687 33.333 0.00 0.00 39.99 3.99
592 629 9.154847 GGATGTACCTACAACTAAAATACGTTT 57.845 33.333 0.00 0.00 39.99 3.60
606 643 6.488062 AAATACGTTTAGATTACTCGTCGC 57.512 37.500 0.00 0.00 36.24 5.19
607 644 3.476295 ACGTTTAGATTACTCGTCGCA 57.524 42.857 0.00 0.00 0.00 5.10
608 645 3.423571 ACGTTTAGATTACTCGTCGCAG 58.576 45.455 0.00 0.00 0.00 5.18
609 646 3.125829 ACGTTTAGATTACTCGTCGCAGA 59.874 43.478 0.00 0.00 0.00 4.26
610 647 4.093514 CGTTTAGATTACTCGTCGCAGAA 58.906 43.478 0.00 0.00 39.69 3.02
611 648 4.556135 CGTTTAGATTACTCGTCGCAGAAA 59.444 41.667 0.00 0.00 39.69 2.52
612 649 5.229469 CGTTTAGATTACTCGTCGCAGAAAT 59.771 40.000 0.00 0.00 39.69 2.17
613 650 6.403615 GTTTAGATTACTCGTCGCAGAAATG 58.596 40.000 0.00 0.00 39.69 2.32
614 651 3.448686 AGATTACTCGTCGCAGAAATGG 58.551 45.455 0.00 0.00 39.69 3.16
615 652 3.130516 AGATTACTCGTCGCAGAAATGGA 59.869 43.478 0.00 0.00 39.69 3.41
616 653 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
617 654 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
618 655 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
619 656 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
620 657 2.535984 CTCGTCGCAGAAATGGATGTAC 59.464 50.000 0.00 0.00 39.69 2.90
621 658 1.593006 CGTCGCAGAAATGGATGTACC 59.407 52.381 0.00 0.00 39.69 3.34
622 659 2.738643 CGTCGCAGAAATGGATGTACCT 60.739 50.000 0.00 0.00 39.69 3.08
623 660 3.490249 CGTCGCAGAAATGGATGTACCTA 60.490 47.826 0.00 0.00 39.69 3.08
624 661 3.802685 GTCGCAGAAATGGATGTACCTAC 59.197 47.826 0.00 0.00 39.69 3.18
625 662 3.449377 TCGCAGAAATGGATGTACCTACA 59.551 43.478 0.00 0.00 40.98 2.74
626 663 4.081365 TCGCAGAAATGGATGTACCTACAA 60.081 41.667 0.00 0.00 39.99 2.41
627 664 4.034048 CGCAGAAATGGATGTACCTACAAC 59.966 45.833 0.00 0.00 39.99 3.32
628 665 5.186198 GCAGAAATGGATGTACCTACAACT 58.814 41.667 0.00 0.00 39.99 3.16
629 666 6.346096 GCAGAAATGGATGTACCTACAACTA 58.654 40.000 0.00 0.00 39.99 2.24
630 667 6.821665 GCAGAAATGGATGTACCTACAACTAA 59.178 38.462 0.00 0.00 39.99 2.24
631 668 7.335924 GCAGAAATGGATGTACCTACAACTAAA 59.664 37.037 0.00 0.00 39.99 1.85
632 669 9.226606 CAGAAATGGATGTACCTACAACTAAAA 57.773 33.333 0.00 0.00 39.99 1.52
633 670 9.975218 AGAAATGGATGTACCTACAACTAAAAT 57.025 29.630 0.00 0.00 39.99 1.82
636 673 8.882415 ATGGATGTACCTACAACTAAAATACG 57.118 34.615 0.00 0.00 39.99 3.06
637 674 7.839907 TGGATGTACCTACAACTAAAATACGT 58.160 34.615 0.00 0.00 39.99 3.57
638 675 8.313292 TGGATGTACCTACAACTAAAATACGTT 58.687 33.333 0.00 0.00 39.99 3.99
639 676 9.154847 GGATGTACCTACAACTAAAATACGTTT 57.845 33.333 0.00 0.00 39.99 3.60
658 695 6.964677 CGTTTAGATACGTACATACCTGTG 57.035 41.667 0.00 0.00 36.80 3.66
659 696 6.718388 CGTTTAGATACGTACATACCTGTGA 58.282 40.000 0.00 0.00 36.80 3.58
660 697 6.630443 CGTTTAGATACGTACATACCTGTGAC 59.370 42.308 0.00 0.00 36.80 3.67
661 698 7.475015 GTTTAGATACGTACATACCTGTGACA 58.525 38.462 0.00 0.00 36.79 3.58
662 699 7.628769 TTAGATACGTACATACCTGTGACAA 57.371 36.000 0.00 0.00 36.79 3.18
663 700 6.132791 AGATACGTACATACCTGTGACAAG 57.867 41.667 0.00 0.00 36.79 3.16
664 701 5.651139 AGATACGTACATACCTGTGACAAGT 59.349 40.000 0.00 0.00 36.79 3.16
665 702 6.825213 AGATACGTACATACCTGTGACAAGTA 59.175 38.462 0.00 0.00 36.79 2.24
666 703 5.710513 ACGTACATACCTGTGACAAGTAA 57.289 39.130 0.00 0.00 36.79 2.24
667 704 6.276832 ACGTACATACCTGTGACAAGTAAT 57.723 37.500 0.00 0.00 36.79 1.89
668 705 6.097356 ACGTACATACCTGTGACAAGTAATG 58.903 40.000 0.00 1.34 36.79 1.90
669 706 5.518847 CGTACATACCTGTGACAAGTAATGG 59.481 44.000 0.00 0.00 36.79 3.16
670 707 5.755409 ACATACCTGTGACAAGTAATGGA 57.245 39.130 0.00 0.00 33.22 3.41
671 708 5.734720 ACATACCTGTGACAAGTAATGGAG 58.265 41.667 0.00 0.00 33.22 3.86
677 714 6.183361 ACCTGTGACAAGTAATGGAGTAGTTT 60.183 38.462 0.00 0.00 0.00 2.66
747 784 7.618442 CGTAATTGATCGTGCAAGTATTAGTT 58.382 34.615 0.00 0.00 31.99 2.24
748 785 7.579093 CGTAATTGATCGTGCAAGTATTAGTTG 59.421 37.037 6.85 6.85 31.99 3.16
822 862 6.530534 GTCACGGGTAGCATATATTATGTGTC 59.469 42.308 2.86 0.00 0.00 3.67
831 871 7.044181 AGCATATATTATGTGTCGATGGGAAG 58.956 38.462 0.00 0.00 0.00 3.46
857 897 9.915629 GTATCTGAAAATATCTAGACGGAACAT 57.084 33.333 0.00 0.00 0.00 2.71
858 898 8.824159 ATCTGAAAATATCTAGACGGAACATG 57.176 34.615 0.00 0.00 0.00 3.21
888 951 3.187227 CGATCGGCTCAATCATTTTAGGG 59.813 47.826 7.38 0.00 0.00 3.53
896 959 4.661222 TCAATCATTTTAGGGACTGTGCA 58.339 39.130 0.77 0.00 41.52 4.57
920 987 1.305219 TACCTGCCTCAATTGTGCGC 61.305 55.000 0.00 0.00 0.00 6.09
978 1045 0.179215 GCGCGTTTGATGACTTCCTG 60.179 55.000 8.43 0.00 0.00 3.86
1026 1096 4.465446 CGGGGAGGAGGAGGAGCA 62.465 72.222 0.00 0.00 0.00 4.26
1230 1300 4.489771 CCCGTGTCCATGGCCTCC 62.490 72.222 6.96 0.00 36.15 4.30
1391 1461 0.249911 GCGGAGAGGAAATACGCCAT 60.250 55.000 0.00 0.00 44.01 4.40
1454 1524 3.937706 CTCTCCAATGCAGAAGGTAACAG 59.062 47.826 0.00 0.00 41.41 3.16
1463 1533 3.004734 GCAGAAGGTAACAGCATTGTTGT 59.995 43.478 0.00 0.00 46.63 3.32
1475 1545 3.067180 AGCATTGTTGTACATATGCCTGC 59.933 43.478 23.50 15.98 40.31 4.85
1511 1591 9.839185 ATGGGTACTATGTATATTCTACCAAGT 57.161 33.333 0.00 0.00 0.00 3.16
1535 1615 8.402683 AGTAGGTATCTCAGTATATGGTCCAAT 58.597 37.037 0.00 0.00 0.00 3.16
1574 1654 4.940046 ACAGAAATGCACGAATCTCTTGAT 59.060 37.500 0.00 0.00 33.70 2.57
1582 1662 6.775088 TGCACGAATCTCTTGATTTTATGTC 58.225 36.000 0.00 0.00 42.43 3.06
1594 1674 4.629634 TGATTTTATGTCGCATTGAGACGT 59.370 37.500 17.53 17.53 41.24 4.34
1671 1758 7.627340 AGATCGTACCGCAACTAATTAATTTG 58.373 34.615 5.91 7.05 0.00 2.32
1754 1843 1.600636 CCATGGGTTCGTGCACACT 60.601 57.895 18.64 0.00 0.00 3.55
1785 1874 2.122813 CCTCGGGAGGCCCACTAT 60.123 66.667 0.00 0.00 45.83 2.12
1789 1878 0.832135 TCGGGAGGCCCACTATGATC 60.832 60.000 0.00 0.00 45.83 2.92
1798 1887 2.122989 ACTATGATCCCCGGCCGT 60.123 61.111 26.12 4.65 0.00 5.68
1882 1971 2.253452 GCCGTTGTGAAGCTGCTG 59.747 61.111 1.35 0.00 0.00 4.41
2206 2295 2.358737 GGTGTGGGCACGAAGAGG 60.359 66.667 0.00 0.00 46.13 3.69
2331 2420 1.560866 AAGCAGAGGAAGCTGGGGAG 61.561 60.000 0.00 0.00 42.53 4.30
2352 2441 2.119391 GGTGGGTGCATGGGGAAA 59.881 61.111 0.00 0.00 0.00 3.13
2508 2600 4.508662 AGTGTGCTAAGACCTAAGAATGC 58.491 43.478 0.00 0.00 0.00 3.56
2517 2609 4.853007 AGACCTAAGAATGCTCATGCTTT 58.147 39.130 8.29 0.00 37.78 3.51
2519 2611 6.418101 AGACCTAAGAATGCTCATGCTTTAA 58.582 36.000 8.29 0.00 37.78 1.52
2521 2613 7.228308 AGACCTAAGAATGCTCATGCTTTAATC 59.772 37.037 8.29 4.61 37.78 1.75
2523 2615 7.504911 ACCTAAGAATGCTCATGCTTTAATCAT 59.495 33.333 8.29 0.00 37.78 2.45
2543 2638 7.645058 ATCATTAATCTCTCTAGCTAGCCTC 57.355 40.000 16.35 0.00 0.00 4.70
2545 2640 2.899303 ATCTCTCTAGCTAGCCTCCC 57.101 55.000 16.35 0.00 0.00 4.30
2550 2646 2.203509 TAGCTAGCCTCCCGCCTC 60.204 66.667 12.13 0.00 38.78 4.70
2579 2675 8.527810 GCCTCTATATAAACTGCTAAGTCATCT 58.472 37.037 0.00 0.00 34.77 2.90
2594 2690 8.613482 GCTAAGTCATCTATATATGCGTAGACA 58.387 37.037 13.63 0.00 30.35 3.41
2609 2705 5.805486 TGCGTAGACAATTTGTGAGATACTC 59.195 40.000 6.80 1.41 0.00 2.59
2610 2706 5.232414 GCGTAGACAATTTGTGAGATACTCC 59.768 44.000 6.80 0.00 0.00 3.85
2611 2707 5.749109 CGTAGACAATTTGTGAGATACTCCC 59.251 44.000 6.80 0.00 0.00 4.30
2612 2708 6.405953 CGTAGACAATTTGTGAGATACTCCCT 60.406 42.308 6.80 0.00 0.00 4.20
2613 2709 6.380079 AGACAATTTGTGAGATACTCCCTT 57.620 37.500 6.80 0.00 0.00 3.95
2614 2710 6.410540 AGACAATTTGTGAGATACTCCCTTC 58.589 40.000 6.80 0.00 0.00 3.46
2615 2711 6.214412 AGACAATTTGTGAGATACTCCCTTCT 59.786 38.462 6.80 0.00 0.00 2.85
2616 2712 6.784031 ACAATTTGTGAGATACTCCCTTCTT 58.216 36.000 0.15 0.00 0.00 2.52
2617 2713 7.918076 ACAATTTGTGAGATACTCCCTTCTTA 58.082 34.615 0.15 0.00 0.00 2.10
2621 2717 9.807921 ATTTGTGAGATACTCCCTTCTTAAAAA 57.192 29.630 0.00 0.00 0.00 1.94
2680 2776 7.099666 GTGATCTATCACGCTCTTATGTTTC 57.900 40.000 7.31 0.00 46.46 2.78
2681 2777 6.920758 GTGATCTATCACGCTCTTATGTTTCT 59.079 38.462 7.31 0.00 46.46 2.52
2682 2778 7.436673 GTGATCTATCACGCTCTTATGTTTCTT 59.563 37.037 7.31 0.00 46.46 2.52
2683 2779 7.981789 TGATCTATCACGCTCTTATGTTTCTTT 59.018 33.333 0.00 0.00 0.00 2.52
2684 2780 8.723942 ATCTATCACGCTCTTATGTTTCTTTT 57.276 30.769 0.00 0.00 0.00 2.27
2685 2781 9.817809 ATCTATCACGCTCTTATGTTTCTTTTA 57.182 29.630 0.00 0.00 0.00 1.52
2686 2782 9.817809 TCTATCACGCTCTTATGTTTCTTTTAT 57.182 29.630 0.00 0.00 0.00 1.40
2759 2855 3.374042 TGAGAGACGAGAAGGGAAGAT 57.626 47.619 0.00 0.00 0.00 2.40
2790 2886 4.708177 CGGAGGATCAAAGATACCACAAT 58.292 43.478 0.00 0.00 36.25 2.71
2881 3085 9.090692 GACTGCTAAAAGTTAATAACCGATGTA 57.909 33.333 0.00 0.00 0.00 2.29
2921 3125 7.536622 GTCAAGTTCATGATCAATTTCACTCAC 59.463 37.037 0.00 0.00 0.00 3.51
2930 3134 7.259882 TGATCAATTTCACTCACCAAATATGC 58.740 34.615 0.00 0.00 0.00 3.14
2938 3142 7.320443 TCACTCACCAAATATGCATTTCTAC 57.680 36.000 3.54 0.00 31.82 2.59
2966 3170 5.991328 AAATGACTTGACTGTACACTGTG 57.009 39.130 6.19 6.19 0.00 3.66
2968 3172 4.729227 TGACTTGACTGTACACTGTGAA 57.271 40.909 15.86 0.00 0.00 3.18
2970 3174 4.737855 ACTTGACTGTACACTGTGAAGT 57.262 40.909 15.86 15.03 43.28 3.01
2981 3186 3.131396 CACTGTGAAGTAAAAGCCTCGT 58.869 45.455 0.32 0.00 0.00 4.18
2986 3191 4.222145 TGTGAAGTAAAAGCCTCGTATCCT 59.778 41.667 0.00 0.00 0.00 3.24
2995 3200 3.100671 AGCCTCGTATCCTTTCTCACTT 58.899 45.455 0.00 0.00 0.00 3.16
3079 3290 3.507233 ACAATGGTAGAACAACATGCCTG 59.493 43.478 0.00 0.00 0.00 4.85
3090 3301 0.033796 ACATGCCTGGAGTGGAATGG 60.034 55.000 0.00 0.00 45.41 3.16
3103 3314 5.243730 GGAGTGGAATGGAAGAAATTCAACA 59.756 40.000 6.48 0.00 39.49 3.33
3130 3341 1.219646 TGGAAACAACCTCGTAACGC 58.780 50.000 0.00 0.00 37.44 4.84
3131 3342 0.514255 GGAAACAACCTCGTAACGCC 59.486 55.000 0.00 0.00 0.00 5.68
3132 3343 1.505425 GAAACAACCTCGTAACGCCT 58.495 50.000 0.00 0.00 0.00 5.52
3133 3344 1.458445 GAAACAACCTCGTAACGCCTC 59.542 52.381 0.00 0.00 0.00 4.70
3134 3345 0.320160 AACAACCTCGTAACGCCTCC 60.320 55.000 0.00 0.00 0.00 4.30
3135 3346 1.183676 ACAACCTCGTAACGCCTCCT 61.184 55.000 0.00 0.00 0.00 3.69
3136 3347 0.037605 CAACCTCGTAACGCCTCCTT 60.038 55.000 0.00 0.00 0.00 3.36
3137 3348 0.683412 AACCTCGTAACGCCTCCTTT 59.317 50.000 0.00 0.00 0.00 3.11
3138 3349 1.549203 ACCTCGTAACGCCTCCTTTA 58.451 50.000 0.00 0.00 0.00 1.85
3139 3350 2.105766 ACCTCGTAACGCCTCCTTTAT 58.894 47.619 0.00 0.00 0.00 1.40
3140 3351 2.498885 ACCTCGTAACGCCTCCTTTATT 59.501 45.455 0.00 0.00 0.00 1.40
3141 3352 3.121544 CCTCGTAACGCCTCCTTTATTC 58.878 50.000 0.00 0.00 0.00 1.75
3142 3353 2.787680 CTCGTAACGCCTCCTTTATTCG 59.212 50.000 0.00 0.00 0.00 3.34
3143 3354 2.423185 TCGTAACGCCTCCTTTATTCGA 59.577 45.455 0.00 0.00 0.00 3.71
3144 3355 3.119531 TCGTAACGCCTCCTTTATTCGAA 60.120 43.478 0.00 0.00 0.00 3.71
3145 3356 3.242248 CGTAACGCCTCCTTTATTCGAAG 59.758 47.826 3.35 0.00 0.00 3.79
3146 3357 3.604875 AACGCCTCCTTTATTCGAAGA 57.395 42.857 3.35 0.00 0.00 2.87
3147 3358 3.604875 ACGCCTCCTTTATTCGAAGAA 57.395 42.857 3.35 1.66 45.90 2.52
3148 3359 3.934068 ACGCCTCCTTTATTCGAAGAAA 58.066 40.909 16.40 16.40 45.90 2.52
3149 3360 4.320870 ACGCCTCCTTTATTCGAAGAAAA 58.679 39.130 17.74 12.46 45.90 2.29
3150 3361 4.941873 ACGCCTCCTTTATTCGAAGAAAAT 59.058 37.500 17.74 0.00 45.90 1.82
3151 3362 6.110707 ACGCCTCCTTTATTCGAAGAAAATA 58.889 36.000 17.74 8.71 45.90 1.40
3152 3363 6.766467 ACGCCTCCTTTATTCGAAGAAAATAT 59.234 34.615 17.74 0.00 45.90 1.28
3153 3364 7.072030 CGCCTCCTTTATTCGAAGAAAATATG 58.928 38.462 17.74 7.22 45.90 1.78
3154 3365 7.363431 GCCTCCTTTATTCGAAGAAAATATGG 58.637 38.462 17.74 14.92 45.90 2.74
3155 3366 7.228706 GCCTCCTTTATTCGAAGAAAATATGGA 59.771 37.037 17.74 17.74 45.90 3.41
3156 3367 8.778358 CCTCCTTTATTCGAAGAAAATATGGAG 58.222 37.037 27.76 27.76 45.90 3.86
3157 3368 9.547753 CTCCTTTATTCGAAGAAAATATGGAGA 57.452 33.333 29.33 14.45 45.90 3.71
3158 3369 9.547753 TCCTTTATTCGAAGAAAATATGGAGAG 57.452 33.333 17.74 4.16 45.90 3.20
3159 3370 9.547753 CCTTTATTCGAAGAAAATATGGAGAGA 57.452 33.333 17.74 0.00 45.90 3.10
3181 3392 4.955925 AAAAAGGGGCAAAAGAAAAACG 57.044 36.364 0.00 0.00 0.00 3.60
3182 3393 3.897141 AAAGGGGCAAAAGAAAAACGA 57.103 38.095 0.00 0.00 0.00 3.85
3183 3394 3.897141 AAGGGGCAAAAGAAAAACGAA 57.103 38.095 0.00 0.00 0.00 3.85
3184 3395 3.173668 AGGGGCAAAAGAAAAACGAAC 57.826 42.857 0.00 0.00 0.00 3.95
3185 3396 2.764010 AGGGGCAAAAGAAAAACGAACT 59.236 40.909 0.00 0.00 0.00 3.01
3186 3397 3.955551 AGGGGCAAAAGAAAAACGAACTA 59.044 39.130 0.00 0.00 0.00 2.24
3187 3398 4.587262 AGGGGCAAAAGAAAAACGAACTAT 59.413 37.500 0.00 0.00 0.00 2.12
3188 3399 5.069914 AGGGGCAAAAGAAAAACGAACTATT 59.930 36.000 0.00 0.00 0.00 1.73
3189 3400 5.404366 GGGGCAAAAGAAAAACGAACTATTC 59.596 40.000 0.00 0.00 0.00 1.75
3190 3401 6.213677 GGGCAAAAGAAAAACGAACTATTCT 58.786 36.000 0.00 0.00 33.73 2.40
3191 3402 6.700081 GGGCAAAAGAAAAACGAACTATTCTT 59.300 34.615 0.00 0.00 42.30 2.52
3193 3404 9.240159 GGCAAAAGAAAAACGAACTATTCTTTA 57.760 29.630 11.43 0.00 46.07 1.85
3239 3664 9.671279 AAAAGGCAGAAATTTTAATATCCTTGG 57.329 29.630 0.00 0.00 32.37 3.61
3240 3665 8.608185 AAGGCAGAAATTTTAATATCCTTGGA 57.392 30.769 0.00 0.00 30.98 3.53
3241 3666 8.011844 AGGCAGAAATTTTAATATCCTTGGAC 57.988 34.615 0.00 0.00 0.00 4.02
3242 3667 7.069950 AGGCAGAAATTTTAATATCCTTGGACC 59.930 37.037 0.00 0.00 0.00 4.46
3243 3668 7.069950 GGCAGAAATTTTAATATCCTTGGACCT 59.930 37.037 0.00 0.00 0.00 3.85
3244 3669 8.138074 GCAGAAATTTTAATATCCTTGGACCTC 58.862 37.037 0.00 0.00 0.00 3.85
3245 3670 8.633561 CAGAAATTTTAATATCCTTGGACCTCC 58.366 37.037 0.00 0.00 0.00 4.30
3246 3671 8.569596 AGAAATTTTAATATCCTTGGACCTCCT 58.430 33.333 0.00 0.00 36.82 3.69
3247 3672 9.201989 GAAATTTTAATATCCTTGGACCTCCTT 57.798 33.333 0.00 0.00 36.82 3.36
3248 3673 9.560860 AAATTTTAATATCCTTGGACCTCCTTT 57.439 29.630 0.00 0.00 36.82 3.11
3249 3674 9.560860 AATTTTAATATCCTTGGACCTCCTTTT 57.439 29.630 0.00 0.00 36.82 2.27
3250 3675 8.966155 TTTTAATATCCTTGGACCTCCTTTTT 57.034 30.769 0.00 0.00 36.82 1.94
3251 3676 7.954666 TTAATATCCTTGGACCTCCTTTTTG 57.045 36.000 0.00 0.00 36.82 2.44
3252 3677 5.796502 ATATCCTTGGACCTCCTTTTTGA 57.203 39.130 0.00 0.00 36.82 2.69
3253 3678 3.963476 TCCTTGGACCTCCTTTTTGAA 57.037 42.857 0.00 0.00 36.82 2.69
3254 3679 4.469469 TCCTTGGACCTCCTTTTTGAAT 57.531 40.909 0.00 0.00 36.82 2.57
3255 3680 4.814967 TCCTTGGACCTCCTTTTTGAATT 58.185 39.130 0.00 0.00 36.82 2.17
3256 3681 4.832823 TCCTTGGACCTCCTTTTTGAATTC 59.167 41.667 0.00 0.00 36.82 2.17
3257 3682 4.021104 CCTTGGACCTCCTTTTTGAATTCC 60.021 45.833 2.27 0.00 36.82 3.01
3258 3683 3.153919 TGGACCTCCTTTTTGAATTCCG 58.846 45.455 2.27 0.00 36.82 4.30
3259 3684 3.154710 GGACCTCCTTTTTGAATTCCGT 58.845 45.455 2.27 0.00 0.00 4.69
3260 3685 3.572682 GGACCTCCTTTTTGAATTCCGTT 59.427 43.478 2.27 0.00 0.00 4.44
3261 3686 4.546570 GACCTCCTTTTTGAATTCCGTTG 58.453 43.478 2.27 0.00 0.00 4.10
3262 3687 4.211920 ACCTCCTTTTTGAATTCCGTTGA 58.788 39.130 2.27 0.00 0.00 3.18
3263 3688 4.647399 ACCTCCTTTTTGAATTCCGTTGAA 59.353 37.500 2.27 0.00 34.33 2.69
3264 3689 5.304357 ACCTCCTTTTTGAATTCCGTTGAAT 59.696 36.000 2.27 0.00 43.08 2.57
3265 3690 5.863935 CCTCCTTTTTGAATTCCGTTGAATC 59.136 40.000 2.27 0.00 40.34 2.52
3266 3691 6.294731 CCTCCTTTTTGAATTCCGTTGAATCT 60.295 38.462 2.27 0.00 40.34 2.40
3267 3692 7.094377 CCTCCTTTTTGAATTCCGTTGAATCTA 60.094 37.037 2.27 0.00 40.34 1.98
3268 3693 8.172352 TCCTTTTTGAATTCCGTTGAATCTAA 57.828 30.769 2.27 0.00 40.34 2.10
3269 3694 8.634444 TCCTTTTTGAATTCCGTTGAATCTAAA 58.366 29.630 2.27 0.00 40.34 1.85
3270 3695 9.255304 CCTTTTTGAATTCCGTTGAATCTAAAA 57.745 29.630 2.27 0.00 40.34 1.52
3273 3698 8.980143 TTTGAATTCCGTTGAATCTAAAATCC 57.020 30.769 2.27 0.00 40.34 3.01
3274 3699 7.938140 TGAATTCCGTTGAATCTAAAATCCT 57.062 32.000 2.27 0.00 40.34 3.24
3275 3700 8.348285 TGAATTCCGTTGAATCTAAAATCCTT 57.652 30.769 2.27 0.00 40.34 3.36
3276 3701 9.456147 TGAATTCCGTTGAATCTAAAATCCTTA 57.544 29.630 2.27 0.00 40.34 2.69
3277 3702 9.937175 GAATTCCGTTGAATCTAAAATCCTTAG 57.063 33.333 0.00 0.00 40.34 2.18
3278 3703 9.462606 AATTCCGTTGAATCTAAAATCCTTAGT 57.537 29.630 0.00 0.00 40.34 2.24
3279 3704 7.843490 TCCGTTGAATCTAAAATCCTTAGTG 57.157 36.000 0.00 0.00 0.00 2.74
3280 3705 6.821665 TCCGTTGAATCTAAAATCCTTAGTGG 59.178 38.462 0.00 0.00 37.10 4.00
3281 3706 6.458342 CCGTTGAATCTAAAATCCTTAGTGGC 60.458 42.308 0.00 0.00 35.26 5.01
3282 3707 6.093495 CGTTGAATCTAAAATCCTTAGTGGCA 59.907 38.462 0.00 0.00 35.26 4.92
3283 3708 7.201732 CGTTGAATCTAAAATCCTTAGTGGCAT 60.202 37.037 0.00 0.00 35.26 4.40
3284 3709 9.120538 GTTGAATCTAAAATCCTTAGTGGCATA 57.879 33.333 0.00 0.00 35.26 3.14
3285 3710 9.693739 TTGAATCTAAAATCCTTAGTGGCATAA 57.306 29.630 0.00 0.00 35.26 1.90
3286 3711 9.866655 TGAATCTAAAATCCTTAGTGGCATAAT 57.133 29.630 0.00 0.00 35.26 1.28
3294 3719 8.995027 AATCCTTAGTGGCATAATAACATTCA 57.005 30.769 0.00 0.00 35.26 2.57
3295 3720 8.995027 ATCCTTAGTGGCATAATAACATTCAA 57.005 30.769 0.00 0.00 35.26 2.69
3296 3721 8.815565 TCCTTAGTGGCATAATAACATTCAAA 57.184 30.769 0.00 0.00 35.26 2.69
3297 3722 9.420118 TCCTTAGTGGCATAATAACATTCAAAT 57.580 29.630 0.00 0.00 35.26 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 1.227438 ACAGCGCTACGTGGTTGTT 60.227 52.632 10.99 0.00 0.00 2.83
189 190 3.440151 GCGAGGCCATGCATTCAT 58.560 55.556 13.77 0.00 0.00 2.57
254 256 0.761323 GTAGGGAGGGAGAGGGAAGC 60.761 65.000 0.00 0.00 0.00 3.86
255 257 0.637195 TGTAGGGAGGGAGAGGGAAG 59.363 60.000 0.00 0.00 0.00 3.46
256 258 1.098589 TTGTAGGGAGGGAGAGGGAA 58.901 55.000 0.00 0.00 0.00 3.97
257 259 1.098589 TTTGTAGGGAGGGAGAGGGA 58.901 55.000 0.00 0.00 0.00 4.20
258 260 1.205055 GTTTGTAGGGAGGGAGAGGG 58.795 60.000 0.00 0.00 0.00 4.30
299 308 3.621715 CCACACTTAAATAAGAGACCGGC 59.378 47.826 0.00 0.00 37.08 6.13
344 353 6.095021 ACGGATGTATGTGCGTATATGACTAT 59.905 38.462 0.00 0.00 44.40 2.12
376 385 1.834896 GGGAGAGGGGAGAAGAAAGAC 59.165 57.143 0.00 0.00 0.00 3.01
477 512 1.462670 CAAGAAGTTCTCAGCTTCGGC 59.537 52.381 5.70 0.00 44.97 5.54
511 548 7.668886 AGGAGTAGAAAGTAGTGTACTGCTTAA 59.331 37.037 14.30 3.08 45.90 1.85
532 569 4.576879 GAGTAATTTGGAACGGAAGGAGT 58.423 43.478 0.00 0.00 0.00 3.85
533 570 3.617263 CGAGTAATTTGGAACGGAAGGAG 59.383 47.826 0.00 0.00 0.00 3.69
534 571 3.007182 ACGAGTAATTTGGAACGGAAGGA 59.993 43.478 0.00 0.00 0.00 3.36
535 572 3.332034 ACGAGTAATTTGGAACGGAAGG 58.668 45.455 0.00 0.00 0.00 3.46
536 573 3.060363 CGACGAGTAATTTGGAACGGAAG 59.940 47.826 0.00 0.00 0.00 3.46
537 574 2.988493 CGACGAGTAATTTGGAACGGAA 59.012 45.455 0.00 0.00 0.00 4.30
538 575 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
539 576 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
540 577 1.722464 TGCGACGAGTAATTTGGAACG 59.278 47.619 0.00 0.00 0.00 3.95
541 578 2.991190 TCTGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
542 579 3.306917 TCTGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
543 580 3.306917 TTCTGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
544 581 4.334443 CATTTCTGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
545 582 4.092821 TCCATTTCTGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
546 583 4.250464 TCCATTTCTGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
547 584 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
548 585 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
549 586 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
550 587 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
551 588 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
552 589 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
553 590 2.536365 GTACATCCATTTCTGCGACGA 58.464 47.619 0.00 0.00 0.00 4.20
554 591 1.593006 GGTACATCCATTTCTGCGACG 59.407 52.381 0.00 0.00 35.97 5.12
555 592 2.906354 AGGTACATCCATTTCTGCGAC 58.094 47.619 0.00 0.00 39.02 5.19
556 593 3.449377 TGTAGGTACATCCATTTCTGCGA 59.551 43.478 0.00 0.00 39.02 5.10
557 594 3.792401 TGTAGGTACATCCATTTCTGCG 58.208 45.455 0.00 0.00 39.02 5.18
558 595 5.186198 AGTTGTAGGTACATCCATTTCTGC 58.814 41.667 0.00 0.00 39.02 4.26
559 596 8.786826 TTTAGTTGTAGGTACATCCATTTCTG 57.213 34.615 0.00 0.00 39.02 3.02
560 597 9.975218 ATTTTAGTTGTAGGTACATCCATTTCT 57.025 29.630 0.00 0.00 39.02 2.52
563 600 9.321562 CGTATTTTAGTTGTAGGTACATCCATT 57.678 33.333 0.00 0.00 39.02 3.16
564 601 8.480501 ACGTATTTTAGTTGTAGGTACATCCAT 58.519 33.333 0.00 0.00 39.02 3.41
565 602 7.839907 ACGTATTTTAGTTGTAGGTACATCCA 58.160 34.615 0.00 0.00 39.02 3.41
566 603 8.707938 AACGTATTTTAGTTGTAGGTACATCC 57.292 34.615 0.00 0.00 35.89 3.51
579 616 9.214953 CGACGAGTAATCTAAACGTATTTTAGT 57.785 33.333 5.62 0.00 44.99 2.24
580 617 8.197528 GCGACGAGTAATCTAAACGTATTTTAG 58.802 37.037 0.00 0.00 45.78 1.85
581 618 7.696035 TGCGACGAGTAATCTAAACGTATTTTA 59.304 33.333 0.00 0.00 37.32 1.52
582 619 6.527722 TGCGACGAGTAATCTAAACGTATTTT 59.472 34.615 0.00 0.00 37.32 1.82
583 620 6.029607 TGCGACGAGTAATCTAAACGTATTT 58.970 36.000 0.00 0.00 37.32 1.40
584 621 5.572211 TGCGACGAGTAATCTAAACGTATT 58.428 37.500 0.00 0.00 37.32 1.89
585 622 5.007039 TCTGCGACGAGTAATCTAAACGTAT 59.993 40.000 0.00 0.00 37.32 3.06
586 623 4.329801 TCTGCGACGAGTAATCTAAACGTA 59.670 41.667 0.00 0.00 37.32 3.57
587 624 3.125829 TCTGCGACGAGTAATCTAAACGT 59.874 43.478 0.00 0.00 39.82 3.99
588 625 3.677601 TCTGCGACGAGTAATCTAAACG 58.322 45.455 0.00 0.00 0.00 3.60
589 626 6.403615 CATTTCTGCGACGAGTAATCTAAAC 58.596 40.000 0.00 0.00 0.00 2.01
590 627 5.518847 CCATTTCTGCGACGAGTAATCTAAA 59.481 40.000 0.00 0.00 0.00 1.85
591 628 5.041287 CCATTTCTGCGACGAGTAATCTAA 58.959 41.667 0.00 0.00 0.00 2.10
592 629 4.337274 TCCATTTCTGCGACGAGTAATCTA 59.663 41.667 0.00 0.00 0.00 1.98
593 630 3.130516 TCCATTTCTGCGACGAGTAATCT 59.869 43.478 0.00 0.00 0.00 2.40
594 631 3.444916 TCCATTTCTGCGACGAGTAATC 58.555 45.455 0.00 0.00 0.00 1.75
595 632 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
596 633 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
597 634 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
598 635 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
599 636 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
600 637 2.536365 GTACATCCATTTCTGCGACGA 58.464 47.619 0.00 0.00 0.00 4.20
601 638 1.593006 GGTACATCCATTTCTGCGACG 59.407 52.381 0.00 0.00 35.97 5.12
602 639 2.906354 AGGTACATCCATTTCTGCGAC 58.094 47.619 0.00 0.00 39.02 5.19
603 640 3.449377 TGTAGGTACATCCATTTCTGCGA 59.551 43.478 0.00 0.00 39.02 5.10
604 641 3.792401 TGTAGGTACATCCATTTCTGCG 58.208 45.455 0.00 0.00 39.02 5.18
605 642 5.186198 AGTTGTAGGTACATCCATTTCTGC 58.814 41.667 0.00 0.00 39.02 4.26
606 643 8.786826 TTTAGTTGTAGGTACATCCATTTCTG 57.213 34.615 0.00 0.00 39.02 3.02
607 644 9.975218 ATTTTAGTTGTAGGTACATCCATTTCT 57.025 29.630 0.00 0.00 39.02 2.52
610 647 9.321562 CGTATTTTAGTTGTAGGTACATCCATT 57.678 33.333 0.00 0.00 39.02 3.16
611 648 8.480501 ACGTATTTTAGTTGTAGGTACATCCAT 58.519 33.333 0.00 0.00 39.02 3.41
612 649 7.839907 ACGTATTTTAGTTGTAGGTACATCCA 58.160 34.615 0.00 0.00 39.02 3.41
613 650 8.707938 AACGTATTTTAGTTGTAGGTACATCC 57.292 34.615 0.00 0.00 35.89 3.51
635 672 6.630443 GTCACAGGTATGTACGTATCTAAACG 59.370 42.308 7.57 0.00 42.57 3.60
636 673 7.475015 TGTCACAGGTATGTACGTATCTAAAC 58.525 38.462 7.57 7.14 37.65 2.01
637 674 7.628769 TGTCACAGGTATGTACGTATCTAAA 57.371 36.000 7.57 0.00 37.65 1.85
638 675 7.337689 ACTTGTCACAGGTATGTACGTATCTAA 59.662 37.037 7.57 0.00 37.65 2.10
639 676 6.825213 ACTTGTCACAGGTATGTACGTATCTA 59.175 38.462 7.57 0.00 37.65 1.98
640 677 5.651139 ACTTGTCACAGGTATGTACGTATCT 59.349 40.000 1.77 1.77 37.65 1.98
641 678 5.888105 ACTTGTCACAGGTATGTACGTATC 58.112 41.667 0.00 0.00 37.65 2.24
642 679 5.909621 ACTTGTCACAGGTATGTACGTAT 57.090 39.130 0.00 0.00 37.65 3.06
643 680 6.816134 TTACTTGTCACAGGTATGTACGTA 57.184 37.500 0.00 0.00 37.65 3.57
644 681 5.710513 TTACTTGTCACAGGTATGTACGT 57.289 39.130 0.00 0.00 37.65 3.57
645 682 5.518847 CCATTACTTGTCACAGGTATGTACG 59.481 44.000 0.00 0.00 37.65 3.67
646 683 6.636705 TCCATTACTTGTCACAGGTATGTAC 58.363 40.000 0.00 0.00 37.65 2.90
647 684 6.439375 ACTCCATTACTTGTCACAGGTATGTA 59.561 38.462 0.00 0.00 37.65 2.29
648 685 5.248477 ACTCCATTACTTGTCACAGGTATGT 59.752 40.000 0.00 0.00 41.57 2.29
649 686 5.734720 ACTCCATTACTTGTCACAGGTATG 58.265 41.667 0.00 2.32 0.00 2.39
650 687 6.668283 ACTACTCCATTACTTGTCACAGGTAT 59.332 38.462 0.00 0.00 0.00 2.73
651 688 6.014647 ACTACTCCATTACTTGTCACAGGTA 58.985 40.000 0.00 0.00 0.00 3.08
652 689 4.838986 ACTACTCCATTACTTGTCACAGGT 59.161 41.667 0.00 0.00 0.00 4.00
653 690 5.407407 ACTACTCCATTACTTGTCACAGG 57.593 43.478 0.00 0.00 0.00 4.00
654 691 6.706270 ACAAACTACTCCATTACTTGTCACAG 59.294 38.462 0.00 0.00 0.00 3.66
655 692 6.588204 ACAAACTACTCCATTACTTGTCACA 58.412 36.000 0.00 0.00 0.00 3.58
656 693 7.492352 AACAAACTACTCCATTACTTGTCAC 57.508 36.000 0.00 0.00 0.00 3.67
657 694 8.426489 ACTAACAAACTACTCCATTACTTGTCA 58.574 33.333 0.00 0.00 0.00 3.58
658 695 8.828688 ACTAACAAACTACTCCATTACTTGTC 57.171 34.615 0.00 0.00 0.00 3.18
659 696 9.702494 GTACTAACAAACTACTCCATTACTTGT 57.298 33.333 0.00 0.00 0.00 3.16
660 697 9.701098 TGTACTAACAAACTACTCCATTACTTG 57.299 33.333 0.00 0.00 30.91 3.16
661 698 9.702494 GTGTACTAACAAACTACTCCATTACTT 57.298 33.333 0.00 0.00 37.36 2.24
662 699 9.086758 AGTGTACTAACAAACTACTCCATTACT 57.913 33.333 0.00 0.00 37.36 2.24
665 702 9.086758 AGTAGTGTACTAACAAACTACTCCATT 57.913 33.333 13.08 0.00 39.51 3.16
666 703 8.647256 AGTAGTGTACTAACAAACTACTCCAT 57.353 34.615 13.08 0.00 39.51 3.41
667 704 9.224267 CTAGTAGTGTACTAACAAACTACTCCA 57.776 37.037 19.21 7.55 41.27 3.86
668 705 9.225436 ACTAGTAGTGTACTAACAAACTACTCC 57.775 37.037 19.21 0.00 41.27 3.85
747 784 0.405198 ATCACCCATGGTCTGTTGCA 59.595 50.000 11.73 0.00 31.02 4.08
748 785 1.098050 GATCACCCATGGTCTGTTGC 58.902 55.000 11.73 0.00 32.69 4.17
754 791 1.134098 ACATTCCGATCACCCATGGTC 60.134 52.381 11.73 0.00 31.02 4.02
802 842 6.701841 CCATCGACACATAATATATGCTACCC 59.298 42.308 0.00 0.00 0.00 3.69
822 862 9.579768 CTAGATATTTTCAGATACTTCCCATCG 57.420 37.037 0.00 0.00 0.00 3.84
831 871 9.915629 ATGTTCCGTCTAGATATTTTCAGATAC 57.084 33.333 0.00 0.00 0.00 2.24
857 897 2.437895 AGCCGATCGACGAGGTCA 60.438 61.111 18.66 0.00 45.77 4.02
858 898 1.989966 TTGAGCCGATCGACGAGGTC 61.990 60.000 18.66 14.87 45.77 3.85
888 951 1.576356 GCAGGTATAGCTGCACAGTC 58.424 55.000 38.91 17.56 45.11 3.51
896 959 3.813443 CACAATTGAGGCAGGTATAGCT 58.187 45.455 13.59 0.00 0.00 3.32
910 977 2.805775 TGCATGCGCGCACAATTG 60.806 55.556 39.05 30.48 42.97 2.32
920 987 2.029288 ACAAGGAGTCGTGCATGCG 61.029 57.895 14.09 0.00 0.00 4.73
1062 1132 1.523938 GCCCATGCGGTACTCCTTC 60.524 63.158 0.00 0.00 0.00 3.46
1419 1489 0.033503 TGGAGAGATCCTGGTACGCA 60.034 55.000 0.00 0.00 0.00 5.24
1454 1524 3.374745 GCAGGCATATGTACAACAATGC 58.625 45.455 23.04 23.04 39.54 3.56
1463 1533 2.550855 GCAAGCTAGGCAGGCATATGTA 60.551 50.000 4.29 0.00 31.89 2.29
1475 1545 3.071602 ACATAGTACCCATGCAAGCTAGG 59.928 47.826 0.00 0.00 0.00 3.02
1511 1591 9.615660 AAATTGGACCATATACTGAGATACCTA 57.384 33.333 0.00 0.00 0.00 3.08
1535 1615 7.279536 TGCATTTCTGTTGCTTAATGTCAAAAA 59.720 29.630 0.00 0.00 40.77 1.94
1540 1620 4.321745 CGTGCATTTCTGTTGCTTAATGTC 59.678 41.667 0.00 0.00 40.77 3.06
1574 1654 3.743911 ACACGTCTCAATGCGACATAAAA 59.256 39.130 4.19 0.00 0.00 1.52
1582 1662 1.674611 GGTCGACACGTCTCAATGCG 61.675 60.000 18.91 0.00 0.00 4.73
1594 1674 1.209990 GGTCTCTCTCTAGGGTCGACA 59.790 57.143 18.91 0.00 0.00 4.35
1671 1758 6.812160 ACCTGAACATAATCGAAGAGTACAAC 59.188 38.462 0.00 0.00 40.87 3.32
1679 1768 5.011090 TCTCCACCTGAACATAATCGAAG 57.989 43.478 0.00 0.00 0.00 3.79
1754 1843 0.889638 CCGAGGCGCTGTATCCTAGA 60.890 60.000 7.64 0.00 31.71 2.43
1882 1971 2.125633 GCGAGGAGGGAACGGTTC 60.126 66.667 12.41 12.41 0.00 3.62
2014 2103 2.640989 TCGGACACGACGGACTTG 59.359 61.111 0.00 0.00 45.59 3.16
2128 2217 1.832366 ACTCTGAGCAGCATCATGACT 59.168 47.619 4.19 0.00 0.00 3.41
2352 2441 4.501058 GGACAACTAAACCTCGTCAAGAGT 60.501 45.833 0.00 0.00 45.44 3.24
2517 2609 9.184523 GAGGCTAGCTAGAGAGATTAATGATTA 57.815 37.037 25.15 0.00 0.00 1.75
2519 2611 6.607198 GGAGGCTAGCTAGAGAGATTAATGAT 59.393 42.308 25.15 0.00 0.00 2.45
2521 2613 5.127031 GGGAGGCTAGCTAGAGAGATTAATG 59.873 48.000 25.15 0.00 0.00 1.90
2523 2615 4.668636 GGGAGGCTAGCTAGAGAGATTAA 58.331 47.826 25.15 0.00 0.00 1.40
2525 2617 2.554344 CGGGAGGCTAGCTAGAGAGATT 60.554 54.545 25.15 2.13 0.00 2.40
2550 2646 6.915349 ACTTAGCAGTTTATATAGAGGCGAG 58.085 40.000 0.00 0.00 0.00 5.03
2594 2690 9.807921 TTTTAAGAAGGGAGTATCTCACAAATT 57.192 29.630 1.88 0.00 38.91 1.82
2709 2805 8.076178 GTGACTACAATGCCCATATTTATCAAC 58.924 37.037 0.00 0.00 0.00 3.18
2711 2807 7.286313 TGTGACTACAATGCCCATATTTATCA 58.714 34.615 0.00 0.00 32.88 2.15
2712 2808 7.445402 ACTGTGACTACAATGCCCATATTTATC 59.555 37.037 0.00 0.00 36.14 1.75
2713 2809 7.290061 ACTGTGACTACAATGCCCATATTTAT 58.710 34.615 0.00 0.00 36.14 1.40
2759 2855 5.943349 TCTTTGATCCTCCGGTTGTATTA 57.057 39.130 0.00 0.00 0.00 0.98
2809 2905 9.364989 GATACACCAATTATGCAGCTTTAAAAA 57.635 29.630 0.00 0.00 0.00 1.94
2810 2906 7.978975 GGATACACCAATTATGCAGCTTTAAAA 59.021 33.333 0.00 0.00 38.79 1.52
2811 2907 7.123397 TGGATACACCAATTATGCAGCTTTAAA 59.877 33.333 0.00 0.00 46.75 1.52
2864 3068 8.448615 GCTTCAAACTACATCGGTTATTAACTT 58.551 33.333 6.52 0.00 0.00 2.66
2874 3078 2.474526 CGCTTGCTTCAAACTACATCGG 60.475 50.000 0.00 0.00 0.00 4.18
2881 3085 2.017049 ACTTGACGCTTGCTTCAAACT 58.983 42.857 13.90 2.23 31.41 2.66
2946 3150 4.937201 TCACAGTGTACAGTCAAGTCAT 57.063 40.909 0.00 0.00 0.00 3.06
2947 3151 4.159693 ACTTCACAGTGTACAGTCAAGTCA 59.840 41.667 0.00 0.00 0.00 3.41
2948 3152 4.683832 ACTTCACAGTGTACAGTCAAGTC 58.316 43.478 0.00 0.00 0.00 3.01
2949 3153 4.737855 ACTTCACAGTGTACAGTCAAGT 57.262 40.909 0.00 6.79 0.00 3.16
2950 3154 7.534085 TTTTACTTCACAGTGTACAGTCAAG 57.466 36.000 9.30 6.18 34.06 3.02
2952 3156 5.522460 GCTTTTACTTCACAGTGTACAGTCA 59.478 40.000 9.30 0.00 34.06 3.41
2963 3167 4.222145 AGGATACGAGGCTTTTACTTCACA 59.778 41.667 0.00 0.00 46.39 3.58
2966 3170 6.107343 AGAAAGGATACGAGGCTTTTACTTC 58.893 40.000 0.00 0.00 46.39 3.01
2968 3172 5.187186 TGAGAAAGGATACGAGGCTTTTACT 59.813 40.000 0.00 0.00 46.39 2.24
2970 3174 5.187186 AGTGAGAAAGGATACGAGGCTTTTA 59.813 40.000 0.00 0.00 46.39 1.52
3052 3263 6.238648 GGCATGTTGTTCTACCATTGTATACC 60.239 42.308 0.00 0.00 0.00 2.73
3061 3272 1.702401 TCCAGGCATGTTGTTCTACCA 59.298 47.619 0.00 0.00 0.00 3.25
3079 3290 5.243730 TGTTGAATTTCTTCCATTCCACTCC 59.756 40.000 0.00 0.00 30.89 3.85
3109 3320 2.031930 GCGTTACGAGGTTGTTTCCAAA 59.968 45.455 9.62 0.00 30.94 3.28
3110 3321 1.598601 GCGTTACGAGGTTGTTTCCAA 59.401 47.619 9.62 0.00 0.00 3.53
3111 3322 1.219646 GCGTTACGAGGTTGTTTCCA 58.780 50.000 9.62 0.00 0.00 3.53
3112 3323 0.514255 GGCGTTACGAGGTTGTTTCC 59.486 55.000 9.62 0.00 0.00 3.13
3113 3324 1.458445 GAGGCGTTACGAGGTTGTTTC 59.542 52.381 9.62 0.00 0.00 2.78
3114 3325 1.505425 GAGGCGTTACGAGGTTGTTT 58.495 50.000 9.62 0.00 0.00 2.83
3115 3326 0.320160 GGAGGCGTTACGAGGTTGTT 60.320 55.000 9.62 0.00 0.00 2.83
3116 3327 1.183676 AGGAGGCGTTACGAGGTTGT 61.184 55.000 9.62 0.00 0.00 3.32
3117 3328 0.037605 AAGGAGGCGTTACGAGGTTG 60.038 55.000 9.62 0.00 0.00 3.77
3118 3329 0.683412 AAAGGAGGCGTTACGAGGTT 59.317 50.000 9.62 0.00 0.00 3.50
3119 3330 1.549203 TAAAGGAGGCGTTACGAGGT 58.451 50.000 9.62 0.00 0.00 3.85
3120 3331 2.884894 ATAAAGGAGGCGTTACGAGG 57.115 50.000 9.62 0.00 0.00 4.63
3121 3332 2.787680 CGAATAAAGGAGGCGTTACGAG 59.212 50.000 9.62 0.00 0.00 4.18
3122 3333 2.423185 TCGAATAAAGGAGGCGTTACGA 59.577 45.455 9.62 0.00 0.00 3.43
3123 3334 2.801063 TCGAATAAAGGAGGCGTTACG 58.199 47.619 0.00 0.00 0.00 3.18
3124 3335 4.427312 TCTTCGAATAAAGGAGGCGTTAC 58.573 43.478 0.00 0.00 0.00 2.50
3125 3336 4.724074 TCTTCGAATAAAGGAGGCGTTA 57.276 40.909 0.00 0.00 0.00 3.18
3126 3337 3.604875 TCTTCGAATAAAGGAGGCGTT 57.395 42.857 0.00 0.00 0.00 4.84
3127 3338 3.604875 TTCTTCGAATAAAGGAGGCGT 57.395 42.857 0.00 0.00 0.00 5.68
3128 3339 4.939509 TTTTCTTCGAATAAAGGAGGCG 57.060 40.909 8.47 0.00 0.00 5.52
3129 3340 7.228706 TCCATATTTTCTTCGAATAAAGGAGGC 59.771 37.037 8.47 0.00 30.43 4.70
3130 3341 8.677148 TCCATATTTTCTTCGAATAAAGGAGG 57.323 34.615 8.47 9.44 30.43 4.30
3131 3342 9.547753 TCTCCATATTTTCTTCGAATAAAGGAG 57.452 33.333 22.76 22.76 41.19 3.69
3132 3343 9.547753 CTCTCCATATTTTCTTCGAATAAAGGA 57.452 33.333 8.47 10.29 31.81 3.36
3133 3344 9.547753 TCTCTCCATATTTTCTTCGAATAAAGG 57.452 33.333 8.47 7.10 0.00 3.11
3160 3371 4.580868 TCGTTTTTCTTTTGCCCCTTTTT 58.419 34.783 0.00 0.00 0.00 1.94
3161 3372 4.209307 TCGTTTTTCTTTTGCCCCTTTT 57.791 36.364 0.00 0.00 0.00 2.27
3162 3373 3.897141 TCGTTTTTCTTTTGCCCCTTT 57.103 38.095 0.00 0.00 0.00 3.11
3163 3374 3.196901 AGTTCGTTTTTCTTTTGCCCCTT 59.803 39.130 0.00 0.00 0.00 3.95
3164 3375 2.764010 AGTTCGTTTTTCTTTTGCCCCT 59.236 40.909 0.00 0.00 0.00 4.79
3165 3376 3.173668 AGTTCGTTTTTCTTTTGCCCC 57.826 42.857 0.00 0.00 0.00 5.80
3166 3377 6.213677 AGAATAGTTCGTTTTTCTTTTGCCC 58.786 36.000 0.00 0.00 34.02 5.36
3167 3378 7.694388 AAGAATAGTTCGTTTTTCTTTTGCC 57.306 32.000 0.00 0.00 35.46 4.52
3179 3390 9.490379 AGAAACTGTGATTAAAGAATAGTTCGT 57.510 29.630 0.00 0.00 34.02 3.85
3180 3391 9.959775 GAGAAACTGTGATTAAAGAATAGTTCG 57.040 33.333 0.00 0.00 34.02 3.95
3220 3645 8.569596 AGGAGGTCCAAGGATATTAAAATTTCT 58.430 33.333 0.00 0.00 38.89 2.52
3221 3646 8.768501 AGGAGGTCCAAGGATATTAAAATTTC 57.231 34.615 0.00 0.00 38.89 2.17
3222 3647 9.560860 AAAGGAGGTCCAAGGATATTAAAATTT 57.439 29.630 0.00 0.00 38.89 1.82
3223 3648 9.560860 AAAAGGAGGTCCAAGGATATTAAAATT 57.439 29.630 0.00 0.00 38.89 1.82
3224 3649 9.560860 AAAAAGGAGGTCCAAGGATATTAAAAT 57.439 29.630 0.00 0.00 38.89 1.82
3226 3651 8.174085 TCAAAAAGGAGGTCCAAGGATATTAAA 58.826 33.333 0.00 0.00 38.89 1.52
3227 3652 7.704727 TCAAAAAGGAGGTCCAAGGATATTAA 58.295 34.615 0.00 0.00 38.89 1.40
3228 3653 7.278724 TCAAAAAGGAGGTCCAAGGATATTA 57.721 36.000 0.00 0.00 38.89 0.98
3230 3655 5.796502 TCAAAAAGGAGGTCCAAGGATAT 57.203 39.130 0.00 0.00 38.89 1.63
3231 3656 5.592587 TTCAAAAAGGAGGTCCAAGGATA 57.407 39.130 0.00 0.00 38.89 2.59
3232 3657 4.469469 TTCAAAAAGGAGGTCCAAGGAT 57.531 40.909 0.00 0.00 38.89 3.24
3233 3658 3.963476 TTCAAAAAGGAGGTCCAAGGA 57.037 42.857 0.00 0.00 38.89 3.36
3234 3659 4.021104 GGAATTCAAAAAGGAGGTCCAAGG 60.021 45.833 7.93 0.00 38.89 3.61
3235 3660 4.321230 CGGAATTCAAAAAGGAGGTCCAAG 60.321 45.833 7.93 0.00 38.89 3.61
3236 3661 3.572255 CGGAATTCAAAAAGGAGGTCCAA 59.428 43.478 7.93 0.00 38.89 3.53
3237 3662 3.153919 CGGAATTCAAAAAGGAGGTCCA 58.846 45.455 7.93 0.00 38.89 4.02
3238 3663 3.154710 ACGGAATTCAAAAAGGAGGTCC 58.845 45.455 7.93 0.00 0.00 4.46
3239 3664 4.277423 TCAACGGAATTCAAAAAGGAGGTC 59.723 41.667 7.93 0.00 0.00 3.85
3240 3665 4.211920 TCAACGGAATTCAAAAAGGAGGT 58.788 39.130 7.93 0.00 0.00 3.85
3241 3666 4.846779 TCAACGGAATTCAAAAAGGAGG 57.153 40.909 7.93 0.00 0.00 4.30
3242 3667 6.681777 AGATTCAACGGAATTCAAAAAGGAG 58.318 36.000 7.93 0.00 43.69 3.69
3243 3668 6.648879 AGATTCAACGGAATTCAAAAAGGA 57.351 33.333 7.93 0.00 43.69 3.36
3244 3669 8.810652 TTTAGATTCAACGGAATTCAAAAAGG 57.189 30.769 7.93 0.00 43.69 3.11
3247 3672 9.418045 GGATTTTAGATTCAACGGAATTCAAAA 57.582 29.630 7.93 2.06 43.69 2.44
3248 3673 8.802267 AGGATTTTAGATTCAACGGAATTCAAA 58.198 29.630 7.93 0.00 43.69 2.69
3249 3674 8.348285 AGGATTTTAGATTCAACGGAATTCAA 57.652 30.769 7.93 0.00 43.69 2.69
3250 3675 7.938140 AGGATTTTAGATTCAACGGAATTCA 57.062 32.000 7.93 0.00 43.69 2.57
3251 3676 9.937175 CTAAGGATTTTAGATTCAACGGAATTC 57.063 33.333 0.00 0.00 43.69 2.17
3252 3677 9.462606 ACTAAGGATTTTAGATTCAACGGAATT 57.537 29.630 1.27 0.00 43.69 2.17
3253 3678 8.893727 CACTAAGGATTTTAGATTCAACGGAAT 58.106 33.333 1.27 0.00 46.27 3.01
3254 3679 7.335924 CCACTAAGGATTTTAGATTCAACGGAA 59.664 37.037 1.27 0.00 41.22 4.30
3255 3680 6.821665 CCACTAAGGATTTTAGATTCAACGGA 59.178 38.462 1.27 0.00 41.22 4.69
3256 3681 6.458342 GCCACTAAGGATTTTAGATTCAACGG 60.458 42.308 1.27 0.00 41.22 4.44
3257 3682 6.093495 TGCCACTAAGGATTTTAGATTCAACG 59.907 38.462 1.27 0.00 41.22 4.10
3258 3683 7.391148 TGCCACTAAGGATTTTAGATTCAAC 57.609 36.000 1.27 0.00 41.22 3.18
3259 3684 9.693739 TTATGCCACTAAGGATTTTAGATTCAA 57.306 29.630 1.27 0.00 41.22 2.69
3260 3685 9.866655 ATTATGCCACTAAGGATTTTAGATTCA 57.133 29.630 1.27 0.00 41.22 2.57
3268 3693 9.420118 TGAATGTTATTATGCCACTAAGGATTT 57.580 29.630 0.00 0.00 41.22 2.17
3269 3694 8.995027 TGAATGTTATTATGCCACTAAGGATT 57.005 30.769 0.00 0.00 41.22 3.01
3270 3695 8.995027 TTGAATGTTATTATGCCACTAAGGAT 57.005 30.769 0.00 0.00 41.22 3.24
3271 3696 8.815565 TTTGAATGTTATTATGCCACTAAGGA 57.184 30.769 0.00 0.00 41.22 3.36
3292 3717 9.834628 GAACCACTCGAAAAATGTATAATTTGA 57.165 29.630 0.00 0.00 0.00 2.69
3293 3718 9.619316 TGAACCACTCGAAAAATGTATAATTTG 57.381 29.630 0.00 0.00 0.00 2.32
3295 3720 9.620660 GTTGAACCACTCGAAAAATGTATAATT 57.379 29.630 0.00 0.00 0.00 1.40
3296 3721 9.010029 AGTTGAACCACTCGAAAAATGTATAAT 57.990 29.630 0.00 0.00 0.00 1.28
3297 3722 8.385898 AGTTGAACCACTCGAAAAATGTATAA 57.614 30.769 0.00 0.00 0.00 0.98
3309 3734 2.031683 GTGGTCAAAGTTGAACCACTCG 59.968 50.000 23.44 0.00 44.20 4.18
3310 3735 2.357952 GGTGGTCAAAGTTGAACCACTC 59.642 50.000 26.86 18.38 46.58 3.51
3311 3736 2.375146 GGTGGTCAAAGTTGAACCACT 58.625 47.619 26.86 0.00 46.58 4.00
3312 3737 1.064952 CGGTGGTCAAAGTTGAACCAC 59.935 52.381 22.97 22.97 46.61 4.16
3313 3738 1.384525 CGGTGGTCAAAGTTGAACCA 58.615 50.000 12.97 11.35 44.20 3.67
3315 3740 0.030235 GGCGGTGGTCAAAGTTGAAC 59.970 55.000 1.98 1.98 45.04 3.18
3316 3741 0.394488 TGGCGGTGGTCAAAGTTGAA 60.394 50.000 0.00 0.00 39.21 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.