Multiple sequence alignment - TraesCS5B01G192900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G192900 chr5B 100.000 3289 0 0 1 3289 347990309 347987021 0.000000e+00 6074.0
1 TraesCS5B01G192900 chr5B 91.818 440 32 4 9 447 322875800 322875364 7.800000e-171 610.0
2 TraesCS5B01G192900 chr5D 90.768 2957 141 36 447 3289 302974248 302971310 0.000000e+00 3827.0
3 TraesCS5B01G192900 chr5A 89.985 2736 114 51 629 3228 394753189 394755900 0.000000e+00 3387.0
4 TraesCS5B01G192900 chr5A 100.000 31 0 0 517 547 680221393 680221363 1.270000e-04 58.4
5 TraesCS5B01G192900 chr2B 97.539 447 9 2 1 446 679069307 679069752 0.000000e+00 763.0
6 TraesCS5B01G192900 chr2B 94.937 395 15 4 58 449 321289300 321288908 6.030000e-172 614.0
7 TraesCS5B01G192900 chr4B 96.452 451 10 3 1 446 581908860 581908411 0.000000e+00 739.0
8 TraesCS5B01G192900 chr4B 93.333 390 19 5 58 446 547276398 547276781 1.320000e-158 569.0
9 TraesCS5B01G192900 chr2A 95.768 449 14 4 1 447 529637431 529636986 0.000000e+00 719.0
10 TraesCS5B01G192900 chr2A 76.571 175 23 13 509 666 12046930 12047103 2.720000e-11 80.5
11 TraesCS5B01G192900 chrUn 92.027 439 32 3 9 446 441948850 441948414 6.030000e-172 614.0
12 TraesCS5B01G192900 chrUn 96.923 65 2 0 1 65 38547805 38547741 3.470000e-20 110.0
13 TraesCS5B01G192900 chrUn 96.923 65 2 0 1 65 360851245 360851309 3.470000e-20 110.0
14 TraesCS5B01G192900 chrUn 96.923 65 2 0 1 65 367518817 367518753 3.470000e-20 110.0
15 TraesCS5B01G192900 chrUn 96.923 65 2 0 1 65 441948829 441948765 3.470000e-20 110.0
16 TraesCS5B01G192900 chr7B 94.087 389 19 4 58 445 105905297 105904912 3.660000e-164 588.0
17 TraesCS5B01G192900 chr7B 93.590 390 21 4 58 446 351005250 351005636 2.200000e-161 579.0
18 TraesCS5B01G192900 chr7B 92.308 39 3 0 509 547 588059974 588059936 4.580000e-04 56.5
19 TraesCS5B01G192900 chr6D 75.285 263 41 18 1860 2101 388322443 388322184 1.610000e-18 104.0
20 TraesCS5B01G192900 chr6B 92.188 64 5 0 1860 1923 580241367 580241304 1.260000e-14 91.6
21 TraesCS5B01G192900 chr6A 92.188 64 5 0 1860 1923 534949312 534949249 1.260000e-14 91.6
22 TraesCS5B01G192900 chr1B 90.476 63 6 0 1 63 657210927 657210989 2.100000e-12 84.2
23 TraesCS5B01G192900 chr7A 100.000 38 0 0 510 547 198199436 198199473 1.640000e-08 71.3
24 TraesCS5B01G192900 chr7D 94.737 38 2 0 510 547 458722648 458722611 3.540000e-05 60.2
25 TraesCS5B01G192900 chr4A 100.000 31 0 0 517 547 55375792 55375762 1.270000e-04 58.4
26 TraesCS5B01G192900 chr1A 92.308 39 3 0 509 547 562138272 562138234 4.580000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G192900 chr5B 347987021 347990309 3288 True 6074 6074 100.000 1 3289 1 chr5B.!!$R2 3288
1 TraesCS5B01G192900 chr5D 302971310 302974248 2938 True 3827 3827 90.768 447 3289 1 chr5D.!!$R1 2842
2 TraesCS5B01G192900 chr5A 394753189 394755900 2711 False 3387 3387 89.985 629 3228 1 chr5A.!!$F1 2599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
310 311 0.037605 CGTGGGCTAACGTCCTCTTT 60.038 55.0 0.0 0.0 38.74 2.52 F
348 349 0.105913 AAAAGTCCCTTTTCGGCCCA 60.106 50.0 0.0 0.0 39.10 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2150 2204 0.107654 GCGAGGCACAAGGAAGGTAT 60.108 55.0 0.00 0.0 0.0 2.73 R
2293 2347 0.249699 TTCATCACCGCGTCACTTGT 60.250 50.0 4.92 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.283544 AGTACTTTTTGGTCTACTCTAGGC 57.716 41.667 0.00 0.00 0.00 3.93
31 32 3.509517 GGTCTACTCTAGGCCGGAA 57.490 57.895 5.05 0.00 41.34 4.30
32 33 1.772836 GGTCTACTCTAGGCCGGAAA 58.227 55.000 5.05 0.00 41.34 3.13
33 34 1.682323 GGTCTACTCTAGGCCGGAAAG 59.318 57.143 5.05 0.00 41.34 2.62
34 35 2.377073 GTCTACTCTAGGCCGGAAAGT 58.623 52.381 5.05 2.53 0.00 2.66
35 36 3.549794 GTCTACTCTAGGCCGGAAAGTA 58.450 50.000 5.05 3.68 0.00 2.24
36 37 3.314913 GTCTACTCTAGGCCGGAAAGTAC 59.685 52.174 5.05 0.00 0.00 2.73
37 38 2.528673 ACTCTAGGCCGGAAAGTACT 57.471 50.000 5.05 0.00 0.00 2.73
38 39 2.817665 ACTCTAGGCCGGAAAGTACTT 58.182 47.619 5.05 1.12 0.00 2.24
39 40 3.171528 ACTCTAGGCCGGAAAGTACTTT 58.828 45.455 20.67 20.67 35.14 2.66
40 41 3.581770 ACTCTAGGCCGGAAAGTACTTTT 59.418 43.478 21.40 7.65 32.11 2.27
41 42 4.041321 ACTCTAGGCCGGAAAGTACTTTTT 59.959 41.667 21.40 0.37 32.11 1.94
42 43 4.320870 TCTAGGCCGGAAAGTACTTTTTG 58.679 43.478 21.40 15.88 32.11 2.44
43 44 2.235891 AGGCCGGAAAGTACTTTTTGG 58.764 47.619 24.71 24.71 32.11 3.28
44 45 1.958579 GGCCGGAAAGTACTTTTTGGT 59.041 47.619 27.19 8.59 32.87 3.67
45 46 2.030540 GGCCGGAAAGTACTTTTTGGTC 60.031 50.000 27.19 24.46 32.87 4.02
46 47 2.882761 GCCGGAAAGTACTTTTTGGTCT 59.117 45.455 27.19 7.36 32.87 3.85
47 48 4.067192 GCCGGAAAGTACTTTTTGGTCTA 58.933 43.478 27.19 0.00 32.87 2.59
48 49 4.083643 GCCGGAAAGTACTTTTTGGTCTAC 60.084 45.833 27.19 15.12 32.87 2.59
49 50 5.058490 CCGGAAAGTACTTTTTGGTCTACA 58.942 41.667 21.40 0.00 32.11 2.74
50 51 5.049886 CCGGAAAGTACTTTTTGGTCTACAC 60.050 44.000 21.40 5.23 32.11 2.90
51 52 5.756833 CGGAAAGTACTTTTTGGTCTACACT 59.243 40.000 21.40 0.00 32.11 3.55
52 53 6.925165 CGGAAAGTACTTTTTGGTCTACACTA 59.075 38.462 21.40 0.00 32.11 2.74
53 54 7.115947 CGGAAAGTACTTTTTGGTCTACACTAG 59.884 40.741 21.40 0.00 32.11 2.57
54 55 7.387122 GGAAAGTACTTTTTGGTCTACACTAGG 59.613 40.741 21.40 0.00 32.11 3.02
55 56 5.791666 AGTACTTTTTGGTCTACACTAGGC 58.208 41.667 0.00 0.00 0.00 3.93
60 61 3.491208 GGTCTACACTAGGCCGAGA 57.509 57.895 20.86 3.23 41.34 4.04
61 62 1.760192 GGTCTACACTAGGCCGAGAA 58.240 55.000 20.86 3.66 41.34 2.87
62 63 1.677052 GGTCTACACTAGGCCGAGAAG 59.323 57.143 20.86 13.48 41.34 2.85
63 64 2.641305 GTCTACACTAGGCCGAGAAGA 58.359 52.381 20.86 15.02 0.00 2.87
64 65 3.015327 GTCTACACTAGGCCGAGAAGAA 58.985 50.000 20.86 1.16 0.00 2.52
65 66 3.442977 GTCTACACTAGGCCGAGAAGAAA 59.557 47.826 20.86 0.00 0.00 2.52
66 67 3.695060 TCTACACTAGGCCGAGAAGAAAG 59.305 47.826 20.86 13.13 0.00 2.62
67 68 2.526432 ACACTAGGCCGAGAAGAAAGA 58.474 47.619 20.86 0.00 0.00 2.52
68 69 2.494073 ACACTAGGCCGAGAAGAAAGAG 59.506 50.000 20.86 1.60 0.00 2.85
69 70 2.755655 CACTAGGCCGAGAAGAAAGAGA 59.244 50.000 20.86 0.00 0.00 3.10
70 71 3.020984 ACTAGGCCGAGAAGAAAGAGAG 58.979 50.000 20.86 0.00 0.00 3.20
71 72 2.223803 AGGCCGAGAAGAAAGAGAGA 57.776 50.000 0.00 0.00 0.00 3.10
72 73 2.099405 AGGCCGAGAAGAAAGAGAGAG 58.901 52.381 0.00 0.00 0.00 3.20
73 74 2.096248 GGCCGAGAAGAAAGAGAGAGA 58.904 52.381 0.00 0.00 0.00 3.10
74 75 2.099098 GGCCGAGAAGAAAGAGAGAGAG 59.901 54.545 0.00 0.00 0.00 3.20
75 76 3.013921 GCCGAGAAGAAAGAGAGAGAGA 58.986 50.000 0.00 0.00 0.00 3.10
76 77 3.065371 GCCGAGAAGAAAGAGAGAGAGAG 59.935 52.174 0.00 0.00 0.00 3.20
77 78 4.513442 CCGAGAAGAAAGAGAGAGAGAGA 58.487 47.826 0.00 0.00 0.00 3.10
78 79 4.941263 CCGAGAAGAAAGAGAGAGAGAGAA 59.059 45.833 0.00 0.00 0.00 2.87
79 80 5.414454 CCGAGAAGAAAGAGAGAGAGAGAAA 59.586 44.000 0.00 0.00 0.00 2.52
80 81 6.403636 CCGAGAAGAAAGAGAGAGAGAGAAAG 60.404 46.154 0.00 0.00 0.00 2.62
81 82 6.403636 CGAGAAGAAAGAGAGAGAGAGAAAGG 60.404 46.154 0.00 0.00 0.00 3.11
82 83 6.552008 AGAAGAAAGAGAGAGAGAGAAAGGA 58.448 40.000 0.00 0.00 0.00 3.36
83 84 6.660949 AGAAGAAAGAGAGAGAGAGAAAGGAG 59.339 42.308 0.00 0.00 0.00 3.69
84 85 6.139679 AGAAAGAGAGAGAGAGAAAGGAGA 57.860 41.667 0.00 0.00 0.00 3.71
85 86 6.183347 AGAAAGAGAGAGAGAGAAAGGAGAG 58.817 44.000 0.00 0.00 0.00 3.20
86 87 5.779241 AAGAGAGAGAGAGAAAGGAGAGA 57.221 43.478 0.00 0.00 0.00 3.10
87 88 5.779241 AGAGAGAGAGAGAAAGGAGAGAA 57.221 43.478 0.00 0.00 0.00 2.87
88 89 6.139679 AGAGAGAGAGAGAAAGGAGAGAAA 57.860 41.667 0.00 0.00 0.00 2.52
89 90 6.183347 AGAGAGAGAGAGAAAGGAGAGAAAG 58.817 44.000 0.00 0.00 0.00 2.62
90 91 6.012508 AGAGAGAGAGAGAAAGGAGAGAAAGA 60.013 42.308 0.00 0.00 0.00 2.52
91 92 6.552008 AGAGAGAGAGAAAGGAGAGAAAGAA 58.448 40.000 0.00 0.00 0.00 2.52
92 93 6.660949 AGAGAGAGAGAAAGGAGAGAAAGAAG 59.339 42.308 0.00 0.00 0.00 2.85
93 94 6.552008 AGAGAGAGAAAGGAGAGAAAGAAGA 58.448 40.000 0.00 0.00 0.00 2.87
94 95 7.010160 AGAGAGAGAAAGGAGAGAAAGAAGAA 58.990 38.462 0.00 0.00 0.00 2.52
95 96 6.993079 AGAGAGAAAGGAGAGAAAGAAGAAC 58.007 40.000 0.00 0.00 0.00 3.01
96 97 6.553100 AGAGAGAAAGGAGAGAAAGAAGAACA 59.447 38.462 0.00 0.00 0.00 3.18
97 98 6.758254 AGAGAAAGGAGAGAAAGAAGAACAG 58.242 40.000 0.00 0.00 0.00 3.16
98 99 5.304778 AGAAAGGAGAGAAAGAAGAACAGC 58.695 41.667 0.00 0.00 0.00 4.40
99 100 4.696479 AAGGAGAGAAAGAAGAACAGCA 57.304 40.909 0.00 0.00 0.00 4.41
100 101 4.270245 AGGAGAGAAAGAAGAACAGCAG 57.730 45.455 0.00 0.00 0.00 4.24
101 102 2.741517 GGAGAGAAAGAAGAACAGCAGC 59.258 50.000 0.00 0.00 0.00 5.25
102 103 2.411409 GAGAGAAAGAAGAACAGCAGCG 59.589 50.000 0.00 0.00 0.00 5.18
103 104 2.036475 AGAGAAAGAAGAACAGCAGCGA 59.964 45.455 0.00 0.00 0.00 4.93
104 105 2.139118 AGAAAGAAGAACAGCAGCGAC 58.861 47.619 0.00 0.00 0.00 5.19
105 106 1.867233 GAAAGAAGAACAGCAGCGACA 59.133 47.619 0.00 0.00 0.00 4.35
106 107 1.221414 AAGAAGAACAGCAGCGACAC 58.779 50.000 0.00 0.00 0.00 3.67
107 108 0.104855 AGAAGAACAGCAGCGACACA 59.895 50.000 0.00 0.00 0.00 3.72
108 109 0.510359 GAAGAACAGCAGCGACACAG 59.490 55.000 0.00 0.00 0.00 3.66
109 110 0.882042 AAGAACAGCAGCGACACAGG 60.882 55.000 0.00 0.00 0.00 4.00
110 111 1.300931 GAACAGCAGCGACACAGGA 60.301 57.895 0.00 0.00 0.00 3.86
111 112 1.287730 GAACAGCAGCGACACAGGAG 61.288 60.000 0.00 0.00 0.00 3.69
112 113 2.433838 CAGCAGCGACACAGGAGG 60.434 66.667 0.00 0.00 0.00 4.30
113 114 2.601666 AGCAGCGACACAGGAGGA 60.602 61.111 0.00 0.00 0.00 3.71
114 115 2.210013 AGCAGCGACACAGGAGGAA 61.210 57.895 0.00 0.00 0.00 3.36
115 116 1.739562 GCAGCGACACAGGAGGAAG 60.740 63.158 0.00 0.00 0.00 3.46
116 117 1.967535 CAGCGACACAGGAGGAAGA 59.032 57.895 0.00 0.00 0.00 2.87
117 118 0.318441 CAGCGACACAGGAGGAAGAA 59.682 55.000 0.00 0.00 0.00 2.52
118 119 0.605589 AGCGACACAGGAGGAAGAAG 59.394 55.000 0.00 0.00 0.00 2.85
119 120 1.016653 GCGACACAGGAGGAAGAAGC 61.017 60.000 0.00 0.00 0.00 3.86
120 121 0.390472 CGACACAGGAGGAAGAAGCC 60.390 60.000 0.00 0.00 0.00 4.35
121 122 0.687354 GACACAGGAGGAAGAAGCCA 59.313 55.000 0.00 0.00 0.00 4.75
122 123 0.398318 ACACAGGAGGAAGAAGCCAC 59.602 55.000 0.00 0.00 0.00 5.01
123 124 0.322008 CACAGGAGGAAGAAGCCACC 60.322 60.000 0.00 0.00 38.78 4.61
124 125 1.078848 CAGGAGGAAGAAGCCACCG 60.079 63.158 0.00 0.00 42.74 4.94
125 126 2.436824 GGAGGAAGAAGCCACCGC 60.437 66.667 0.00 0.00 0.00 5.68
135 136 4.547367 GCCACCGCTCGGGCTTAT 62.547 66.667 5.36 0.00 46.74 1.73
136 137 2.280186 CCACCGCTCGGGCTTATC 60.280 66.667 5.36 0.00 40.62 1.75
137 138 2.280186 CACCGCTCGGGCTTATCC 60.280 66.667 5.36 0.00 40.62 2.59
138 139 2.762459 ACCGCTCGGGCTTATCCA 60.762 61.111 5.36 0.00 40.62 3.41
139 140 2.029666 CCGCTCGGGCTTATCCAG 59.970 66.667 5.36 0.00 36.21 3.86
158 159 2.854522 CCTTTTCAGGCTACGGGTG 58.145 57.895 0.00 0.00 31.53 4.61
159 160 0.676782 CCTTTTCAGGCTACGGGTGG 60.677 60.000 0.00 0.00 31.53 4.61
160 161 1.302993 TTTTCAGGCTACGGGTGGC 60.303 57.895 0.00 0.00 36.25 5.01
166 167 4.078516 GCTACGGGTGGCCGAAGT 62.079 66.667 0.00 0.00 36.94 3.01
167 168 2.713967 GCTACGGGTGGCCGAAGTA 61.714 63.158 0.00 0.00 36.94 2.24
168 169 1.140375 CTACGGGTGGCCGAAGTAC 59.860 63.158 0.00 0.00 36.94 2.73
169 170 1.597797 CTACGGGTGGCCGAAGTACA 61.598 60.000 0.00 0.00 36.94 2.90
170 171 1.876497 TACGGGTGGCCGAAGTACAC 61.876 60.000 0.00 0.00 36.94 2.90
171 172 2.939261 CGGGTGGCCGAAGTACACT 61.939 63.158 0.00 0.00 35.53 3.55
172 173 1.373812 GGGTGGCCGAAGTACACTT 59.626 57.895 0.00 0.00 39.23 3.16
173 174 0.672711 GGGTGGCCGAAGTACACTTC 60.673 60.000 11.35 11.35 46.63 3.01
180 181 3.139029 GAAGTACACTTCGGCCTGG 57.861 57.895 0.00 0.00 42.33 4.45
181 182 1.003718 AAGTACACTTCGGCCTGGC 60.004 57.895 11.05 11.05 0.00 4.85
182 183 1.481056 AAGTACACTTCGGCCTGGCT 61.481 55.000 19.68 0.00 0.00 4.75
183 184 1.741770 GTACACTTCGGCCTGGCTG 60.742 63.158 21.69 21.69 36.06 4.85
184 185 2.954684 TACACTTCGGCCTGGCTGG 61.955 63.158 26.46 14.31 35.34 4.85
205 206 1.510844 CGAAAAGGGCCCATTTCGG 59.489 57.895 45.04 33.13 46.49 4.30
206 207 2.557059 CGAAAAGGGCCCATTTCGGC 62.557 60.000 45.04 26.01 46.49 5.54
212 213 3.451894 GCCCATTTCGGCCACCAG 61.452 66.667 2.24 0.00 43.66 4.00
213 214 3.451894 CCCATTTCGGCCACCAGC 61.452 66.667 2.24 0.00 42.60 4.85
214 215 2.361610 CCATTTCGGCCACCAGCT 60.362 61.111 2.24 0.00 43.05 4.24
230 231 3.688553 GCTGGCCGAAGCTACTATT 57.311 52.632 7.81 0.00 40.20 1.73
231 232 1.954927 GCTGGCCGAAGCTACTATTT 58.045 50.000 7.81 0.00 40.20 1.40
232 233 2.289565 GCTGGCCGAAGCTACTATTTT 58.710 47.619 7.81 0.00 40.20 1.82
233 234 2.288186 GCTGGCCGAAGCTACTATTTTC 59.712 50.000 7.81 0.00 40.20 2.29
234 235 2.540101 CTGGCCGAAGCTACTATTTTCG 59.460 50.000 0.00 0.00 42.31 3.46
238 239 1.521423 CGAAGCTACTATTTTCGGCCG 59.479 52.381 22.12 22.12 39.82 6.13
239 240 1.865340 GAAGCTACTATTTTCGGCCGG 59.135 52.381 27.83 10.66 0.00 6.13
240 241 0.106149 AGCTACTATTTTCGGCCGGG 59.894 55.000 27.83 11.04 0.00 5.73
241 242 1.504647 GCTACTATTTTCGGCCGGGC 61.505 60.000 27.83 20.04 0.00 6.13
242 243 0.883370 CTACTATTTTCGGCCGGGCC 60.883 60.000 28.61 28.61 46.75 5.80
256 257 4.947147 GGCCACCACCGACAGCAA 62.947 66.667 0.00 0.00 0.00 3.91
257 258 3.660111 GCCACCACCGACAGCAAC 61.660 66.667 0.00 0.00 0.00 4.17
258 259 2.111043 CCACCACCGACAGCAACT 59.889 61.111 0.00 0.00 0.00 3.16
259 260 1.961277 CCACCACCGACAGCAACTC 60.961 63.158 0.00 0.00 0.00 3.01
260 261 1.069765 CACCACCGACAGCAACTCT 59.930 57.895 0.00 0.00 0.00 3.24
261 262 0.532862 CACCACCGACAGCAACTCTT 60.533 55.000 0.00 0.00 0.00 2.85
262 263 0.249911 ACCACCGACAGCAACTCTTC 60.250 55.000 0.00 0.00 0.00 2.87
263 264 1.284982 CCACCGACAGCAACTCTTCG 61.285 60.000 0.00 0.00 0.00 3.79
264 265 3.862124 CCGACAGCAACTCTTCGG 58.138 61.111 0.00 0.00 44.65 4.30
265 266 2.383527 CCGACAGCAACTCTTCGGC 61.384 63.158 0.00 0.00 44.16 5.54
266 267 2.383527 CGACAGCAACTCTTCGGCC 61.384 63.158 0.00 0.00 0.00 6.13
267 268 2.032681 ACAGCAACTCTTCGGCCC 59.967 61.111 0.00 0.00 0.00 5.80
268 269 2.032528 CAGCAACTCTTCGGCCCA 59.967 61.111 0.00 0.00 0.00 5.36
269 270 2.032681 AGCAACTCTTCGGCCCAC 59.967 61.111 0.00 0.00 0.00 4.61
270 271 3.056328 GCAACTCTTCGGCCCACC 61.056 66.667 0.00 0.00 0.00 4.61
271 272 2.429930 CAACTCTTCGGCCCACCA 59.570 61.111 0.00 0.00 34.57 4.17
272 273 1.966451 CAACTCTTCGGCCCACCAC 60.966 63.158 0.00 0.00 34.57 4.16
273 274 2.448582 AACTCTTCGGCCCACCACA 61.449 57.895 0.00 0.00 34.57 4.17
274 275 2.046892 CTCTTCGGCCCACCACAG 60.047 66.667 0.00 0.00 34.57 3.66
275 276 4.329545 TCTTCGGCCCACCACAGC 62.330 66.667 0.00 0.00 34.57 4.40
276 277 4.335647 CTTCGGCCCACCACAGCT 62.336 66.667 0.00 0.00 34.57 4.24
277 278 4.329545 TTCGGCCCACCACAGCTC 62.330 66.667 0.00 0.00 34.57 4.09
280 281 4.643387 GGCCCACCACAGCTCGTT 62.643 66.667 0.00 0.00 35.26 3.85
281 282 2.594592 GCCCACCACAGCTCGTTT 60.595 61.111 0.00 0.00 0.00 3.60
282 283 2.193536 GCCCACCACAGCTCGTTTT 61.194 57.895 0.00 0.00 0.00 2.43
283 284 1.949257 CCCACCACAGCTCGTTTTC 59.051 57.895 0.00 0.00 0.00 2.29
284 285 1.569493 CCACCACAGCTCGTTTTCG 59.431 57.895 0.00 0.00 45.64 3.46
285 286 1.569493 CACCACAGCTCGTTTTCGG 59.431 57.895 0.00 0.00 44.25 4.30
286 287 1.145377 ACCACAGCTCGTTTTCGGT 59.855 52.632 0.00 0.00 44.25 4.69
287 288 0.878961 ACCACAGCTCGTTTTCGGTC 60.879 55.000 0.00 0.00 44.25 4.79
288 289 0.878523 CCACAGCTCGTTTTCGGTCA 60.879 55.000 0.00 0.00 44.25 4.02
289 290 0.934496 CACAGCTCGTTTTCGGTCAA 59.066 50.000 0.00 0.00 44.25 3.18
290 291 0.935196 ACAGCTCGTTTTCGGTCAAC 59.065 50.000 0.00 0.00 44.25 3.18
291 292 0.234884 CAGCTCGTTTTCGGTCAACC 59.765 55.000 0.00 0.00 44.25 3.77
301 302 3.976758 GGTCAACCGTGGGCTAAC 58.023 61.111 0.00 0.00 0.00 2.34
302 303 2.030958 GGTCAACCGTGGGCTAACG 61.031 63.158 6.33 6.33 43.20 3.18
303 304 1.301165 GTCAACCGTGGGCTAACGT 60.301 57.895 11.25 0.00 42.01 3.99
304 305 1.005867 TCAACCGTGGGCTAACGTC 60.006 57.895 11.25 0.00 42.01 4.34
305 306 2.030958 CAACCGTGGGCTAACGTCC 61.031 63.158 11.25 0.00 42.01 4.79
306 307 2.212110 AACCGTGGGCTAACGTCCT 61.212 57.895 11.25 0.00 42.01 3.85
307 308 2.163601 AACCGTGGGCTAACGTCCTC 62.164 60.000 11.25 0.00 42.01 3.71
308 309 2.348888 CCGTGGGCTAACGTCCTCT 61.349 63.158 11.25 0.00 42.01 3.69
309 310 1.590147 CGTGGGCTAACGTCCTCTT 59.410 57.895 0.00 0.00 38.74 2.85
310 311 0.037605 CGTGGGCTAACGTCCTCTTT 60.038 55.000 0.00 0.00 38.74 2.52
311 312 1.607251 CGTGGGCTAACGTCCTCTTTT 60.607 52.381 0.00 0.00 38.74 2.27
312 313 2.074576 GTGGGCTAACGTCCTCTTTTC 58.925 52.381 0.00 0.00 35.36 2.29
313 314 1.337447 TGGGCTAACGTCCTCTTTTCG 60.337 52.381 0.00 0.00 35.36 3.46
314 315 1.356938 GGCTAACGTCCTCTTTTCGG 58.643 55.000 0.00 0.00 0.00 4.30
315 316 0.720027 GCTAACGTCCTCTTTTCGGC 59.280 55.000 0.00 0.00 0.00 5.54
316 317 1.356938 CTAACGTCCTCTTTTCGGCC 58.643 55.000 0.00 0.00 0.00 6.13
317 318 0.388907 TAACGTCCTCTTTTCGGCCG 60.389 55.000 22.12 22.12 0.00 6.13
318 319 2.091102 AACGTCCTCTTTTCGGCCGA 62.091 55.000 27.28 27.28 0.00 5.54
319 320 1.373748 CGTCCTCTTTTCGGCCGAA 60.374 57.895 35.81 35.81 0.00 4.30
320 321 1.352156 CGTCCTCTTTTCGGCCGAAG 61.352 60.000 36.54 27.74 35.38 3.79
332 333 2.671619 CCGAAGGCTGGCCGAAAA 60.672 61.111 5.93 0.00 46.14 2.29
333 334 2.690778 CCGAAGGCTGGCCGAAAAG 61.691 63.158 5.93 0.00 46.14 2.27
334 335 1.966451 CGAAGGCTGGCCGAAAAGT 60.966 57.895 5.93 0.00 41.95 2.66
335 336 1.876664 GAAGGCTGGCCGAAAAGTC 59.123 57.895 5.93 0.00 41.95 3.01
336 337 1.587043 GAAGGCTGGCCGAAAAGTCC 61.587 60.000 5.93 0.00 41.95 3.85
337 338 3.062466 GGCTGGCCGAAAAGTCCC 61.062 66.667 0.00 0.00 0.00 4.46
338 339 2.034221 GCTGGCCGAAAAGTCCCT 59.966 61.111 0.00 0.00 0.00 4.20
339 340 1.603739 GCTGGCCGAAAAGTCCCTT 60.604 57.895 0.00 0.00 0.00 3.95
340 341 1.179174 GCTGGCCGAAAAGTCCCTTT 61.179 55.000 0.00 0.00 34.94 3.11
341 342 1.328279 CTGGCCGAAAAGTCCCTTTT 58.672 50.000 0.00 1.79 44.92 2.27
347 348 0.601558 GAAAAGTCCCTTTTCGGCCC 59.398 55.000 12.22 0.00 45.96 5.80
348 349 0.105913 AAAAGTCCCTTTTCGGCCCA 60.106 50.000 0.00 0.00 39.10 5.36
349 350 0.105913 AAAGTCCCTTTTCGGCCCAA 60.106 50.000 0.00 0.00 28.27 4.12
350 351 0.539669 AAGTCCCTTTTCGGCCCAAG 60.540 55.000 0.00 0.00 0.00 3.61
351 352 2.282887 TCCCTTTTCGGCCCAAGC 60.283 61.111 0.00 0.00 38.76 4.01
352 353 3.747976 CCCTTTTCGGCCCAAGCG 61.748 66.667 0.00 0.00 41.24 4.68
353 354 2.671619 CCTTTTCGGCCCAAGCGA 60.672 61.111 0.00 0.00 41.24 4.93
354 355 2.690778 CCTTTTCGGCCCAAGCGAG 61.691 63.158 0.00 0.00 41.24 5.03
355 356 2.671619 TTTTCGGCCCAAGCGAGG 60.672 61.111 0.00 0.00 41.24 4.63
362 363 4.473520 CCCAAGCGAGGCCGACAT 62.474 66.667 0.00 0.00 38.22 3.06
363 364 3.197790 CCAAGCGAGGCCGACATG 61.198 66.667 0.00 0.00 38.22 3.21
364 365 3.197790 CAAGCGAGGCCGACATGG 61.198 66.667 0.00 0.00 42.50 3.66
365 366 3.706373 AAGCGAGGCCGACATGGT 61.706 61.111 0.00 0.00 41.21 3.55
366 367 3.665675 AAGCGAGGCCGACATGGTC 62.666 63.158 0.00 0.00 45.43 4.02
372 373 3.780624 GGCCGACATGGTCATAGTT 57.219 52.632 0.00 0.00 44.04 2.24
373 374 2.038387 GGCCGACATGGTCATAGTTT 57.962 50.000 0.00 0.00 44.04 2.66
374 375 2.365582 GGCCGACATGGTCATAGTTTT 58.634 47.619 0.00 0.00 44.04 2.43
375 376 2.097466 GGCCGACATGGTCATAGTTTTG 59.903 50.000 0.00 0.00 44.04 2.44
376 377 2.477863 GCCGACATGGTCATAGTTTTGC 60.478 50.000 0.00 0.00 41.21 3.68
377 378 2.746904 CCGACATGGTCATAGTTTTGCA 59.253 45.455 0.00 0.00 32.09 4.08
378 379 3.378112 CCGACATGGTCATAGTTTTGCAT 59.622 43.478 0.00 0.00 32.09 3.96
379 380 4.142403 CCGACATGGTCATAGTTTTGCATT 60.142 41.667 0.00 0.00 32.09 3.56
380 381 5.401550 CGACATGGTCATAGTTTTGCATTT 58.598 37.500 0.00 0.00 32.09 2.32
381 382 5.863397 CGACATGGTCATAGTTTTGCATTTT 59.137 36.000 0.00 0.00 32.09 1.82
382 383 6.365789 CGACATGGTCATAGTTTTGCATTTTT 59.634 34.615 0.00 0.00 32.09 1.94
407 408 9.443323 TTTTTCATTCTGTGATATAGTTTCCGA 57.557 29.630 0.00 0.00 36.54 4.55
408 409 9.443323 TTTTCATTCTGTGATATAGTTTCCGAA 57.557 29.630 0.00 0.00 36.54 4.30
409 410 9.613428 TTTCATTCTGTGATATAGTTTCCGAAT 57.387 29.630 0.00 0.00 36.54 3.34
410 411 9.613428 TTCATTCTGTGATATAGTTTCCGAATT 57.387 29.630 0.00 0.00 36.54 2.17
411 412 9.613428 TCATTCTGTGATATAGTTTCCGAATTT 57.387 29.630 0.00 0.00 0.00 1.82
412 413 9.655769 CATTCTGTGATATAGTTTCCGAATTTG 57.344 33.333 0.00 0.00 0.00 2.32
413 414 7.246674 TCTGTGATATAGTTTCCGAATTTGC 57.753 36.000 0.00 0.00 0.00 3.68
414 415 7.047891 TCTGTGATATAGTTTCCGAATTTGCT 58.952 34.615 0.00 0.00 0.00 3.91
415 416 7.552687 TCTGTGATATAGTTTCCGAATTTGCTT 59.447 33.333 0.00 0.00 0.00 3.91
416 417 7.693952 TGTGATATAGTTTCCGAATTTGCTTC 58.306 34.615 0.00 0.00 0.00 3.86
417 418 7.335673 TGTGATATAGTTTCCGAATTTGCTTCA 59.664 33.333 0.00 0.00 33.10 3.02
418 419 8.181573 GTGATATAGTTTCCGAATTTGCTTCAA 58.818 33.333 0.00 0.00 33.10 2.69
419 420 8.735315 TGATATAGTTTCCGAATTTGCTTCAAA 58.265 29.630 0.00 0.00 37.75 2.69
420 421 9.567848 GATATAGTTTCCGAATTTGCTTCAAAA 57.432 29.630 0.00 0.00 36.90 2.44
421 422 9.921637 ATATAGTTTCCGAATTTGCTTCAAAAA 57.078 25.926 0.00 0.00 36.90 1.94
466 467 1.896660 GCTCACCGGGCTGTTTTCA 60.897 57.895 6.32 0.00 0.00 2.69
479 480 4.381505 GGCTGTTTTCAAGTGGTTTCAAGA 60.382 41.667 0.00 0.00 0.00 3.02
501 502 1.935933 AAACTTGAGCGTCAACGTCT 58.064 45.000 4.29 2.10 42.22 4.18
504 505 1.215014 CTTGAGCGTCAACGTCTGCA 61.215 55.000 4.29 0.00 42.22 4.41
515 527 1.069765 CGTCTGCAGAAGGTGTGGT 59.930 57.895 20.19 0.00 0.00 4.16
521 533 1.071699 TGCAGAAGGTGTGGTTAGGTC 59.928 52.381 0.00 0.00 0.00 3.85
534 546 4.008330 TGGTTAGGTCTTAGTCGACTGAG 58.992 47.826 26.80 26.80 34.38 3.35
548 560 9.784680 TTAGTCGACTGAGATTTAATCAAGTAC 57.215 33.333 28.12 6.65 31.25 2.73
608 624 8.982685 ACACTTATCTTAATGCATAATCTCACG 58.017 33.333 0.00 0.00 0.00 4.35
641 657 6.080648 TCGACTGAGCTAACAAAGTCTTAA 57.919 37.500 0.00 0.00 37.49 1.85
643 659 7.152645 TCGACTGAGCTAACAAAGTCTTAATT 58.847 34.615 0.00 0.00 37.49 1.40
647 663 7.173390 ACTGAGCTAACAAAGTCTTAATTGACC 59.827 37.037 0.00 0.00 37.66 4.02
701 717 3.635268 GACAGGGGCAGGGCAAGAG 62.635 68.421 0.00 0.00 0.00 2.85
746 762 2.547430 CGAGACAGATACTGCATGGCAT 60.547 50.000 0.00 0.00 38.13 4.40
747 763 2.806818 GAGACAGATACTGCATGGCATG 59.193 50.000 22.99 22.99 38.13 4.06
767 783 0.839946 AATATTCTCTGCCGGGCTGT 59.160 50.000 21.46 6.29 0.00 4.40
828 845 4.225042 TGCTAGATTAAGGAGCAGGAACAA 59.775 41.667 0.00 0.00 41.18 2.83
887 904 6.293407 GGAAACTGAAAACGAGACATCAATGA 60.293 38.462 0.00 0.00 0.00 2.57
888 905 5.852738 ACTGAAAACGAGACATCAATGAG 57.147 39.130 0.00 0.00 0.00 2.90
996 1017 1.530183 GCTGCCTTCCCATCCATCC 60.530 63.158 0.00 0.00 0.00 3.51
997 1018 1.925120 CTGCCTTCCCATCCATCCA 59.075 57.895 0.00 0.00 0.00 3.41
998 1019 0.481567 CTGCCTTCCCATCCATCCAT 59.518 55.000 0.00 0.00 0.00 3.41
999 1020 0.479815 TGCCTTCCCATCCATCCATC 59.520 55.000 0.00 0.00 0.00 3.51
1068 1092 0.701147 CCTTCCCTTTCCCTGAAGCT 59.299 55.000 0.00 0.00 35.32 3.74
1177 1210 4.821589 CTCGTCTGCTTCCCCGGC 62.822 72.222 0.00 0.00 0.00 6.13
1246 1279 3.953775 ACCCTGGACAAGGCGGTG 61.954 66.667 0.00 0.00 45.89 4.94
1355 1388 3.795638 GCGGTTCTAAGGCGAAGG 58.204 61.111 0.00 0.00 0.00 3.46
1441 1474 2.751837 CCAAAGAAGCCGAGGCCC 60.752 66.667 10.95 3.24 43.17 5.80
1442 1475 2.034066 CAAAGAAGCCGAGGCCCA 59.966 61.111 10.95 0.00 43.17 5.36
1458 1491 1.003355 CCATGGTGGAGAAGCACGT 60.003 57.895 2.57 0.00 40.96 4.49
1686 1722 0.386352 GACGACGACAATGACGTGGA 60.386 55.000 23.14 0.00 43.97 4.02
1858 1912 4.295119 AAAGCGACGTCCGTGCCT 62.295 61.111 10.58 0.00 41.15 4.75
2014 2068 2.032634 GTTCATGAGAACGGCGCCA 61.033 57.895 28.98 5.63 44.11 5.69
2150 2204 1.127397 CGTTGTACAGAGCTCGACGTA 59.873 52.381 8.37 8.71 35.21 3.57
2216 2270 2.097954 TGCAAAGCATAAATCCGAGCTG 59.902 45.455 0.00 0.00 37.41 4.24
2326 2380 2.165030 GTGATGAAAGGGACATGGCTTG 59.835 50.000 0.00 0.00 0.00 4.01
2466 2550 1.133598 ACCTGAATGTTGCATGCATCG 59.866 47.619 23.37 11.63 0.00 3.84
2473 2557 3.419264 TGTTGCATGCATCGGAATTAC 57.581 42.857 23.37 14.36 0.00 1.89
2544 2667 5.641777 TCGCAAGATCACGAAATAATCAG 57.358 39.130 0.00 0.00 45.01 2.90
2577 2700 3.504134 CGGATTGGTCTCTCGATCTACAT 59.496 47.826 0.00 0.00 0.00 2.29
2611 2756 6.373779 CAGGCATCAGTTTACACTTAACTTG 58.626 40.000 0.00 0.00 33.73 3.16
2612 2757 6.017109 CAGGCATCAGTTTACACTTAACTTGT 60.017 38.462 0.00 0.00 33.73 3.16
2613 2758 6.017109 AGGCATCAGTTTACACTTAACTTGTG 60.017 38.462 0.00 0.00 40.87 3.33
2615 2760 6.724263 CATCAGTTTACACTTAACTTGTGCA 58.276 36.000 0.00 0.00 38.86 4.57
2775 2921 3.695830 TCGAGTACTGCAAAAGGGAAT 57.304 42.857 0.00 0.00 0.00 3.01
2782 2928 0.539438 TGCAAAAGGGAATCGGCAGT 60.539 50.000 0.00 0.00 0.00 4.40
2792 2947 1.663135 GAATCGGCAGTGAAAGCTCTC 59.337 52.381 0.00 0.00 0.00 3.20
2829 2998 6.016276 CACTTACACACCCTTGAAAAGCTAAT 60.016 38.462 0.00 0.00 44.44 1.73
2846 3015 3.623060 GCTAATTTGCTCACAGATCGGAA 59.377 43.478 4.53 0.00 0.00 4.30
2877 3046 7.066887 TGTGCTAAACATTTGTTTCTCTGAAGA 59.933 33.333 11.70 0.00 44.15 2.87
2919 3088 3.295973 TGGGCTGTAAAGCTTCTTGTTT 58.704 40.909 4.54 0.00 34.73 2.83
2923 3092 4.519350 GGCTGTAAAGCTTCTTGTTTACCT 59.481 41.667 4.54 0.00 38.04 3.08
2924 3093 5.452777 GCTGTAAAGCTTCTTGTTTACCTG 58.547 41.667 0.00 0.00 38.04 4.00
2925 3094 5.008712 GCTGTAAAGCTTCTTGTTTACCTGT 59.991 40.000 0.00 0.00 38.04 4.00
2981 3153 4.270084 CGTGCTACGGAACATGATTACATT 59.730 41.667 0.00 0.00 38.08 2.71
2982 3154 5.460748 CGTGCTACGGAACATGATTACATTA 59.539 40.000 0.00 0.00 38.08 1.90
3058 3231 0.675083 CATTGCCAAACTGCAGGTGA 59.325 50.000 19.93 0.46 43.21 4.02
3060 3233 0.961019 TTGCCAAACTGCAGGTGATC 59.039 50.000 19.93 10.84 43.21 2.92
3066 3239 3.820467 CCAAACTGCAGGTGATCTGTAAA 59.180 43.478 19.93 0.00 45.08 2.01
3084 3257 9.887406 ATCTGTAAATTCGTAAAAACATTCGTT 57.113 25.926 0.00 0.00 36.73 3.85
3111 3287 1.404851 GGCACTCTACACTTCTGCTCC 60.405 57.143 0.00 0.00 0.00 4.70
3145 3321 2.533266 GCAAAGAGCGATGATAGGGA 57.467 50.000 0.00 0.00 0.00 4.20
3146 3322 3.051081 GCAAAGAGCGATGATAGGGAT 57.949 47.619 0.00 0.00 0.00 3.85
3187 3363 1.895131 GAAGGCAGGGCAAAATGAAGA 59.105 47.619 0.00 0.00 0.00 2.87
3263 3441 4.809426 CAGACATTGGAAACTACCGATACC 59.191 45.833 0.00 0.00 33.19 2.73
3283 3461 1.401905 CGAAGAATTAGGCCCTGCAAC 59.598 52.381 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.660617 GCCTAGAGTAGACCAAAAAGTACTTTT 59.339 37.037 24.66 24.66 43.88 2.27
1 2 7.160049 GCCTAGAGTAGACCAAAAAGTACTTT 58.840 38.462 15.22 15.22 0.00 2.66
2 3 6.295745 GGCCTAGAGTAGACCAAAAAGTACTT 60.296 42.308 1.12 1.12 0.00 2.24
3 4 5.187381 GGCCTAGAGTAGACCAAAAAGTACT 59.813 44.000 0.00 0.00 0.00 2.73
4 5 5.417811 GGCCTAGAGTAGACCAAAAAGTAC 58.582 45.833 0.00 0.00 0.00 2.73
5 6 4.159135 CGGCCTAGAGTAGACCAAAAAGTA 59.841 45.833 0.00 0.00 0.00 2.24
6 7 3.056035 CGGCCTAGAGTAGACCAAAAAGT 60.056 47.826 0.00 0.00 0.00 2.66
7 8 3.522553 CGGCCTAGAGTAGACCAAAAAG 58.477 50.000 0.00 0.00 0.00 2.27
8 9 2.235402 CCGGCCTAGAGTAGACCAAAAA 59.765 50.000 0.00 0.00 0.00 1.94
9 10 1.829222 CCGGCCTAGAGTAGACCAAAA 59.171 52.381 0.00 0.00 0.00 2.44
10 11 1.006281 TCCGGCCTAGAGTAGACCAAA 59.994 52.381 0.00 0.00 0.00 3.28
11 12 0.627451 TCCGGCCTAGAGTAGACCAA 59.373 55.000 0.00 0.00 0.00 3.67
12 13 0.627451 TTCCGGCCTAGAGTAGACCA 59.373 55.000 0.00 0.00 0.00 4.02
13 14 1.682323 CTTTCCGGCCTAGAGTAGACC 59.318 57.143 0.00 0.00 0.00 3.85
14 15 2.377073 ACTTTCCGGCCTAGAGTAGAC 58.623 52.381 0.00 0.00 0.00 2.59
15 16 2.822707 ACTTTCCGGCCTAGAGTAGA 57.177 50.000 0.00 0.00 0.00 2.59
16 17 3.553904 AGTACTTTCCGGCCTAGAGTAG 58.446 50.000 0.00 2.10 0.00 2.57
17 18 3.659183 AGTACTTTCCGGCCTAGAGTA 57.341 47.619 0.00 1.05 0.00 2.59
18 19 2.528673 AGTACTTTCCGGCCTAGAGT 57.471 50.000 0.00 2.10 0.00 3.24
19 20 3.889520 AAAGTACTTTCCGGCCTAGAG 57.110 47.619 15.22 0.00 0.00 2.43
20 21 4.320870 CAAAAAGTACTTTCCGGCCTAGA 58.679 43.478 20.78 0.00 31.45 2.43
21 22 3.439129 CCAAAAAGTACTTTCCGGCCTAG 59.561 47.826 20.78 5.59 31.45 3.02
22 23 3.181441 ACCAAAAAGTACTTTCCGGCCTA 60.181 43.478 25.27 0.00 30.96 3.93
23 24 2.235891 CCAAAAAGTACTTTCCGGCCT 58.764 47.619 20.78 1.74 31.45 5.19
24 25 1.958579 ACCAAAAAGTACTTTCCGGCC 59.041 47.619 25.27 0.00 30.96 6.13
25 26 2.882761 AGACCAAAAAGTACTTTCCGGC 59.117 45.455 25.27 19.85 30.96 6.13
26 27 5.049886 GTGTAGACCAAAAAGTACTTTCCGG 60.050 44.000 24.35 24.35 32.89 5.14
27 28 5.756833 AGTGTAGACCAAAAAGTACTTTCCG 59.243 40.000 20.78 14.16 31.45 4.30
28 29 7.387122 CCTAGTGTAGACCAAAAAGTACTTTCC 59.613 40.741 20.78 8.47 31.45 3.13
29 30 7.095313 GCCTAGTGTAGACCAAAAAGTACTTTC 60.095 40.741 20.78 8.59 31.45 2.62
30 31 6.709397 GCCTAGTGTAGACCAAAAAGTACTTT 59.291 38.462 15.22 15.22 0.00 2.66
31 32 6.228995 GCCTAGTGTAGACCAAAAAGTACTT 58.771 40.000 1.12 1.12 0.00 2.24
32 33 5.279859 GGCCTAGTGTAGACCAAAAAGTACT 60.280 44.000 0.00 0.00 0.00 2.73
33 34 4.934001 GGCCTAGTGTAGACCAAAAAGTAC 59.066 45.833 0.00 0.00 0.00 2.73
34 35 4.322198 CGGCCTAGTGTAGACCAAAAAGTA 60.322 45.833 0.00 0.00 0.00 2.24
35 36 3.556423 CGGCCTAGTGTAGACCAAAAAGT 60.556 47.826 0.00 0.00 0.00 2.66
36 37 3.000727 CGGCCTAGTGTAGACCAAAAAG 58.999 50.000 0.00 0.00 0.00 2.27
37 38 2.633967 TCGGCCTAGTGTAGACCAAAAA 59.366 45.455 0.00 0.00 0.00 1.94
38 39 2.232941 CTCGGCCTAGTGTAGACCAAAA 59.767 50.000 0.00 0.00 0.00 2.44
39 40 1.822990 CTCGGCCTAGTGTAGACCAAA 59.177 52.381 0.00 0.00 0.00 3.28
40 41 1.005097 TCTCGGCCTAGTGTAGACCAA 59.995 52.381 3.89 0.00 0.00 3.67
41 42 0.622136 TCTCGGCCTAGTGTAGACCA 59.378 55.000 3.89 0.00 0.00 4.02
42 43 1.677052 CTTCTCGGCCTAGTGTAGACC 59.323 57.143 3.89 0.00 0.00 3.85
43 44 2.641305 TCTTCTCGGCCTAGTGTAGAC 58.359 52.381 3.89 0.00 0.00 2.59
44 45 3.361281 TTCTTCTCGGCCTAGTGTAGA 57.639 47.619 3.89 3.71 0.00 2.59
45 46 3.695060 TCTTTCTTCTCGGCCTAGTGTAG 59.305 47.826 3.89 1.45 0.00 2.74
46 47 3.693807 TCTTTCTTCTCGGCCTAGTGTA 58.306 45.455 3.89 0.00 0.00 2.90
47 48 2.494073 CTCTTTCTTCTCGGCCTAGTGT 59.506 50.000 3.89 0.00 0.00 3.55
48 49 2.755655 TCTCTTTCTTCTCGGCCTAGTG 59.244 50.000 3.89 0.00 0.00 2.74
49 50 3.020984 CTCTCTTTCTTCTCGGCCTAGT 58.979 50.000 3.89 0.00 0.00 2.57
50 51 3.283751 TCTCTCTTTCTTCTCGGCCTAG 58.716 50.000 0.00 0.00 0.00 3.02
51 52 3.054287 TCTCTCTCTTTCTTCTCGGCCTA 60.054 47.826 0.00 0.00 0.00 3.93
52 53 2.099405 CTCTCTCTTTCTTCTCGGCCT 58.901 52.381 0.00 0.00 0.00 5.19
53 54 2.096248 TCTCTCTCTTTCTTCTCGGCC 58.904 52.381 0.00 0.00 0.00 6.13
54 55 3.013921 TCTCTCTCTCTTTCTTCTCGGC 58.986 50.000 0.00 0.00 0.00 5.54
55 56 4.513442 TCTCTCTCTCTCTTTCTTCTCGG 58.487 47.826 0.00 0.00 0.00 4.63
56 57 6.403636 CCTTTCTCTCTCTCTCTTTCTTCTCG 60.404 46.154 0.00 0.00 0.00 4.04
57 58 6.659242 TCCTTTCTCTCTCTCTCTTTCTTCTC 59.341 42.308 0.00 0.00 0.00 2.87
58 59 6.552008 TCCTTTCTCTCTCTCTCTTTCTTCT 58.448 40.000 0.00 0.00 0.00 2.85
59 60 6.659242 TCTCCTTTCTCTCTCTCTCTTTCTTC 59.341 42.308 0.00 0.00 0.00 2.87
60 61 6.552008 TCTCCTTTCTCTCTCTCTCTTTCTT 58.448 40.000 0.00 0.00 0.00 2.52
61 62 6.012508 TCTCTCCTTTCTCTCTCTCTCTTTCT 60.013 42.308 0.00 0.00 0.00 2.52
62 63 6.180472 TCTCTCCTTTCTCTCTCTCTCTTTC 58.820 44.000 0.00 0.00 0.00 2.62
63 64 6.139679 TCTCTCCTTTCTCTCTCTCTCTTT 57.860 41.667 0.00 0.00 0.00 2.52
64 65 5.779241 TCTCTCCTTTCTCTCTCTCTCTT 57.221 43.478 0.00 0.00 0.00 2.85
65 66 5.779241 TTCTCTCCTTTCTCTCTCTCTCT 57.221 43.478 0.00 0.00 0.00 3.10
66 67 6.180472 TCTTTCTCTCCTTTCTCTCTCTCTC 58.820 44.000 0.00 0.00 0.00 3.20
67 68 6.139679 TCTTTCTCTCCTTTCTCTCTCTCT 57.860 41.667 0.00 0.00 0.00 3.10
68 69 6.659242 TCTTCTTTCTCTCCTTTCTCTCTCTC 59.341 42.308 0.00 0.00 0.00 3.20
69 70 6.552008 TCTTCTTTCTCTCCTTTCTCTCTCT 58.448 40.000 0.00 0.00 0.00 3.10
70 71 6.834168 TCTTCTTTCTCTCCTTTCTCTCTC 57.166 41.667 0.00 0.00 0.00 3.20
71 72 6.553100 TGTTCTTCTTTCTCTCCTTTCTCTCT 59.447 38.462 0.00 0.00 0.00 3.10
72 73 6.754193 TGTTCTTCTTTCTCTCCTTTCTCTC 58.246 40.000 0.00 0.00 0.00 3.20
73 74 6.739331 TGTTCTTCTTTCTCTCCTTTCTCT 57.261 37.500 0.00 0.00 0.00 3.10
74 75 5.408299 GCTGTTCTTCTTTCTCTCCTTTCTC 59.592 44.000 0.00 0.00 0.00 2.87
75 76 5.163258 TGCTGTTCTTCTTTCTCTCCTTTCT 60.163 40.000 0.00 0.00 0.00 2.52
76 77 5.059833 TGCTGTTCTTCTTTCTCTCCTTTC 58.940 41.667 0.00 0.00 0.00 2.62
77 78 5.041191 TGCTGTTCTTCTTTCTCTCCTTT 57.959 39.130 0.00 0.00 0.00 3.11
78 79 4.640364 CTGCTGTTCTTCTTTCTCTCCTT 58.360 43.478 0.00 0.00 0.00 3.36
79 80 3.556843 GCTGCTGTTCTTCTTTCTCTCCT 60.557 47.826 0.00 0.00 0.00 3.69
80 81 2.741517 GCTGCTGTTCTTCTTTCTCTCC 59.258 50.000 0.00 0.00 0.00 3.71
81 82 2.411409 CGCTGCTGTTCTTCTTTCTCTC 59.589 50.000 0.00 0.00 0.00 3.20
82 83 2.036475 TCGCTGCTGTTCTTCTTTCTCT 59.964 45.455 0.00 0.00 0.00 3.10
83 84 2.156697 GTCGCTGCTGTTCTTCTTTCTC 59.843 50.000 0.00 0.00 0.00 2.87
84 85 2.139118 GTCGCTGCTGTTCTTCTTTCT 58.861 47.619 0.00 0.00 0.00 2.52
85 86 1.867233 TGTCGCTGCTGTTCTTCTTTC 59.133 47.619 0.00 0.00 0.00 2.62
86 87 1.599542 GTGTCGCTGCTGTTCTTCTTT 59.400 47.619 0.00 0.00 0.00 2.52
87 88 1.221414 GTGTCGCTGCTGTTCTTCTT 58.779 50.000 0.00 0.00 0.00 2.52
88 89 0.104855 TGTGTCGCTGCTGTTCTTCT 59.895 50.000 0.00 0.00 0.00 2.85
89 90 0.510359 CTGTGTCGCTGCTGTTCTTC 59.490 55.000 0.00 0.00 0.00 2.87
90 91 0.882042 CCTGTGTCGCTGCTGTTCTT 60.882 55.000 0.00 0.00 0.00 2.52
91 92 1.301244 CCTGTGTCGCTGCTGTTCT 60.301 57.895 0.00 0.00 0.00 3.01
92 93 1.287730 CTCCTGTGTCGCTGCTGTTC 61.288 60.000 0.00 0.00 0.00 3.18
93 94 1.301244 CTCCTGTGTCGCTGCTGTT 60.301 57.895 0.00 0.00 0.00 3.16
94 95 2.341543 CTCCTGTGTCGCTGCTGT 59.658 61.111 0.00 0.00 0.00 4.40
95 96 2.433838 CCTCCTGTGTCGCTGCTG 60.434 66.667 0.00 0.00 0.00 4.41
96 97 2.164865 CTTCCTCCTGTGTCGCTGCT 62.165 60.000 0.00 0.00 0.00 4.24
97 98 1.739562 CTTCCTCCTGTGTCGCTGC 60.740 63.158 0.00 0.00 0.00 5.25
98 99 0.318441 TTCTTCCTCCTGTGTCGCTG 59.682 55.000 0.00 0.00 0.00 5.18
99 100 0.605589 CTTCTTCCTCCTGTGTCGCT 59.394 55.000 0.00 0.00 0.00 4.93
100 101 1.016653 GCTTCTTCCTCCTGTGTCGC 61.017 60.000 0.00 0.00 0.00 5.19
101 102 0.390472 GGCTTCTTCCTCCTGTGTCG 60.390 60.000 0.00 0.00 0.00 4.35
102 103 0.687354 TGGCTTCTTCCTCCTGTGTC 59.313 55.000 0.00 0.00 0.00 3.67
103 104 0.398318 GTGGCTTCTTCCTCCTGTGT 59.602 55.000 0.00 0.00 0.00 3.72
104 105 0.322008 GGTGGCTTCTTCCTCCTGTG 60.322 60.000 0.00 0.00 36.94 3.66
105 106 1.831652 CGGTGGCTTCTTCCTCCTGT 61.832 60.000 0.00 0.00 37.57 4.00
106 107 1.078848 CGGTGGCTTCTTCCTCCTG 60.079 63.158 0.00 0.00 37.57 3.86
107 108 2.960688 GCGGTGGCTTCTTCCTCCT 61.961 63.158 0.00 0.00 37.57 3.69
108 109 2.436824 GCGGTGGCTTCTTCCTCC 60.437 66.667 0.00 0.00 36.63 4.30
119 120 2.280186 GATAAGCCCGAGCGGTGG 60.280 66.667 8.25 0.00 46.67 4.61
120 121 2.280186 GGATAAGCCCGAGCGGTG 60.280 66.667 8.25 0.85 46.67 4.94
121 122 2.762459 TGGATAAGCCCGAGCGGT 60.762 61.111 8.25 0.00 46.67 5.68
122 123 2.029666 CTGGATAAGCCCGAGCGG 59.970 66.667 1.06 1.06 46.67 5.52
140 141 0.676782 CCACCCGTAGCCTGAAAAGG 60.677 60.000 0.00 0.00 0.00 3.11
141 142 1.305930 GCCACCCGTAGCCTGAAAAG 61.306 60.000 0.00 0.00 0.00 2.27
142 143 1.302993 GCCACCCGTAGCCTGAAAA 60.303 57.895 0.00 0.00 0.00 2.29
143 144 2.349755 GCCACCCGTAGCCTGAAA 59.650 61.111 0.00 0.00 0.00 2.69
144 145 3.712907 GGCCACCCGTAGCCTGAA 61.713 66.667 0.00 0.00 46.14 3.02
154 155 0.672711 GAAGTGTACTTCGGCCACCC 60.673 60.000 2.24 0.00 42.33 4.61
155 156 2.836944 GAAGTGTACTTCGGCCACC 58.163 57.895 2.24 0.00 42.33 4.61
162 163 1.019805 GCCAGGCCGAAGTGTACTTC 61.020 60.000 13.43 13.43 46.63 3.01
163 164 1.003718 GCCAGGCCGAAGTGTACTT 60.004 57.895 0.00 0.00 39.23 2.24
164 165 1.913762 AGCCAGGCCGAAGTGTACT 60.914 57.895 8.22 0.00 0.00 2.73
165 166 1.741770 CAGCCAGGCCGAAGTGTAC 60.742 63.158 8.22 0.00 0.00 2.90
166 167 2.662596 CAGCCAGGCCGAAGTGTA 59.337 61.111 8.22 0.00 0.00 2.90
167 168 4.335647 CCAGCCAGGCCGAAGTGT 62.336 66.667 8.22 0.00 0.00 3.55
196 197 3.451894 GCTGGTGGCCGAAATGGG 61.452 66.667 0.00 0.00 38.63 4.00
197 198 2.361610 AGCTGGTGGCCGAAATGG 60.362 61.111 0.00 0.00 43.05 3.16
198 199 2.703798 CCAGCTGGTGGCCGAAATG 61.704 63.158 25.53 0.00 40.39 2.32
199 200 2.361610 CCAGCTGGTGGCCGAAAT 60.362 61.111 25.53 0.00 40.39 2.17
212 213 1.954927 AAATAGTAGCTTCGGCCAGC 58.045 50.000 6.98 6.98 43.01 4.85
213 214 2.540101 CGAAAATAGTAGCTTCGGCCAG 59.460 50.000 2.24 0.00 43.01 4.85
214 215 2.546778 CGAAAATAGTAGCTTCGGCCA 58.453 47.619 2.24 0.00 43.01 5.36
218 219 1.521423 CGGCCGAAAATAGTAGCTTCG 59.479 52.381 24.07 8.68 41.18 3.79
219 220 1.865340 CCGGCCGAAAATAGTAGCTTC 59.135 52.381 30.73 0.00 0.00 3.86
220 221 1.474498 CCCGGCCGAAAATAGTAGCTT 60.474 52.381 30.73 0.00 0.00 3.74
221 222 0.106149 CCCGGCCGAAAATAGTAGCT 59.894 55.000 30.73 0.00 0.00 3.32
222 223 1.504647 GCCCGGCCGAAAATAGTAGC 61.505 60.000 30.73 10.79 0.00 3.58
223 224 0.883370 GGCCCGGCCGAAAATAGTAG 60.883 60.000 30.73 5.91 39.62 2.57
224 225 1.146707 GGCCCGGCCGAAAATAGTA 59.853 57.895 30.73 0.00 39.62 1.82
225 226 2.124445 GGCCCGGCCGAAAATAGT 60.124 61.111 30.73 0.00 39.62 2.12
239 240 4.947147 TTGCTGTCGGTGGTGGCC 62.947 66.667 0.00 0.00 0.00 5.36
240 241 3.660111 GTTGCTGTCGGTGGTGGC 61.660 66.667 0.00 0.00 0.00 5.01
241 242 1.961277 GAGTTGCTGTCGGTGGTGG 60.961 63.158 0.00 0.00 0.00 4.61
242 243 0.532862 AAGAGTTGCTGTCGGTGGTG 60.533 55.000 0.00 0.00 0.00 4.17
243 244 0.249911 GAAGAGTTGCTGTCGGTGGT 60.250 55.000 0.00 0.00 0.00 4.16
244 245 1.284982 CGAAGAGTTGCTGTCGGTGG 61.285 60.000 0.00 0.00 0.00 4.61
245 246 1.284982 CCGAAGAGTTGCTGTCGGTG 61.285 60.000 2.84 0.00 46.26 4.94
246 247 1.006102 CCGAAGAGTTGCTGTCGGT 60.006 57.895 2.84 0.00 46.26 4.69
247 248 3.862124 CCGAAGAGTTGCTGTCGG 58.138 61.111 0.00 0.00 46.23 4.79
248 249 2.383527 GGCCGAAGAGTTGCTGTCG 61.384 63.158 0.00 0.00 0.00 4.35
249 250 2.035442 GGGCCGAAGAGTTGCTGTC 61.035 63.158 0.00 0.00 0.00 3.51
250 251 2.032681 GGGCCGAAGAGTTGCTGT 59.967 61.111 0.00 0.00 0.00 4.40
251 252 2.032528 TGGGCCGAAGAGTTGCTG 59.967 61.111 0.00 0.00 0.00 4.41
252 253 2.032681 GTGGGCCGAAGAGTTGCT 59.967 61.111 0.00 0.00 0.00 3.91
253 254 3.056328 GGTGGGCCGAAGAGTTGC 61.056 66.667 0.00 0.00 0.00 4.17
254 255 1.966451 GTGGTGGGCCGAAGAGTTG 60.966 63.158 0.00 0.00 37.67 3.16
255 256 2.397413 CTGTGGTGGGCCGAAGAGTT 62.397 60.000 0.00 0.00 37.67 3.01
256 257 2.847234 TGTGGTGGGCCGAAGAGT 60.847 61.111 0.00 0.00 37.67 3.24
257 258 2.046892 CTGTGGTGGGCCGAAGAG 60.047 66.667 0.00 0.00 37.67 2.85
258 259 4.329545 GCTGTGGTGGGCCGAAGA 62.330 66.667 0.00 0.00 37.67 2.87
259 260 4.335647 AGCTGTGGTGGGCCGAAG 62.336 66.667 0.00 0.00 37.67 3.79
260 261 4.329545 GAGCTGTGGTGGGCCGAA 62.330 66.667 0.00 0.00 37.67 4.30
263 264 4.643387 AACGAGCTGTGGTGGGCC 62.643 66.667 0.00 0.00 0.00 5.80
264 265 2.130073 GAAAACGAGCTGTGGTGGGC 62.130 60.000 0.00 0.00 0.00 5.36
265 266 1.841663 CGAAAACGAGCTGTGGTGGG 61.842 60.000 0.00 0.00 0.00 4.61
266 267 1.569493 CGAAAACGAGCTGTGGTGG 59.431 57.895 0.00 0.00 0.00 4.61
267 268 1.157870 ACCGAAAACGAGCTGTGGTG 61.158 55.000 0.00 0.00 0.00 4.17
268 269 0.878961 GACCGAAAACGAGCTGTGGT 60.879 55.000 0.00 0.00 0.00 4.16
269 270 0.878523 TGACCGAAAACGAGCTGTGG 60.879 55.000 0.00 0.00 0.00 4.17
270 271 0.934496 TTGACCGAAAACGAGCTGTG 59.066 50.000 0.00 0.00 0.00 3.66
271 272 0.935196 GTTGACCGAAAACGAGCTGT 59.065 50.000 0.00 0.00 0.00 4.40
272 273 0.234884 GGTTGACCGAAAACGAGCTG 59.765 55.000 0.00 0.00 0.00 4.24
273 274 2.613390 GGTTGACCGAAAACGAGCT 58.387 52.632 0.00 0.00 0.00 4.09
284 285 2.030958 CGTTAGCCCACGGTTGACC 61.031 63.158 0.00 0.00 36.47 4.02
285 286 1.287041 GACGTTAGCCCACGGTTGAC 61.287 60.000 9.84 0.00 44.82 3.18
286 287 1.005867 GACGTTAGCCCACGGTTGA 60.006 57.895 9.84 0.00 44.82 3.18
287 288 2.030958 GGACGTTAGCCCACGGTTG 61.031 63.158 9.84 0.00 44.82 3.77
288 289 2.163601 GAGGACGTTAGCCCACGGTT 62.164 60.000 9.84 0.00 44.82 4.44
289 290 2.602568 AGGACGTTAGCCCACGGT 60.603 61.111 9.84 0.00 44.82 4.83
290 291 1.885163 AAGAGGACGTTAGCCCACGG 61.885 60.000 9.84 0.00 44.82 4.94
291 292 0.037605 AAAGAGGACGTTAGCCCACG 60.038 55.000 3.80 3.80 46.04 4.94
292 293 2.074576 GAAAAGAGGACGTTAGCCCAC 58.925 52.381 0.00 0.00 0.00 4.61
293 294 1.337447 CGAAAAGAGGACGTTAGCCCA 60.337 52.381 0.00 0.00 0.00 5.36
294 295 1.356938 CGAAAAGAGGACGTTAGCCC 58.643 55.000 0.00 0.00 0.00 5.19
295 296 1.356938 CCGAAAAGAGGACGTTAGCC 58.643 55.000 0.00 0.00 0.00 3.93
296 297 0.720027 GCCGAAAAGAGGACGTTAGC 59.280 55.000 0.00 0.00 0.00 3.09
297 298 1.356938 GGCCGAAAAGAGGACGTTAG 58.643 55.000 0.00 0.00 0.00 2.34
298 299 3.520187 GGCCGAAAAGAGGACGTTA 57.480 52.632 0.00 0.00 0.00 3.18
299 300 4.373771 GGCCGAAAAGAGGACGTT 57.626 55.556 0.00 0.00 0.00 3.99
302 303 1.019805 CCTTCGGCCGAAAAGAGGAC 61.020 60.000 37.62 0.00 33.34 3.85
303 304 1.295423 CCTTCGGCCGAAAAGAGGA 59.705 57.895 37.62 17.27 33.34 3.71
304 305 2.399356 GCCTTCGGCCGAAAAGAGG 61.399 63.158 37.62 34.02 44.06 3.69
305 306 3.178539 GCCTTCGGCCGAAAAGAG 58.821 61.111 37.62 26.82 44.06 2.85
315 316 2.671619 TTTTCGGCCAGCCTTCGG 60.672 61.111 2.24 0.00 0.00 4.30
316 317 1.912371 GACTTTTCGGCCAGCCTTCG 61.912 60.000 2.24 0.00 0.00 3.79
317 318 1.587043 GGACTTTTCGGCCAGCCTTC 61.587 60.000 2.24 0.00 0.00 3.46
318 319 1.603739 GGACTTTTCGGCCAGCCTT 60.604 57.895 2.24 0.00 0.00 4.35
319 320 2.034221 GGACTTTTCGGCCAGCCT 59.966 61.111 2.24 0.00 0.00 4.58
320 321 3.062466 GGGACTTTTCGGCCAGCC 61.062 66.667 2.24 0.00 0.00 4.85
321 322 2.034221 AGGGACTTTTCGGCCAGC 59.966 61.111 2.24 0.00 27.25 4.85
333 334 2.636412 GCTTGGGCCGAAAAGGGAC 61.636 63.158 0.54 0.00 41.48 4.46
334 335 2.282887 GCTTGGGCCGAAAAGGGA 60.283 61.111 0.54 0.00 41.48 4.20
335 336 3.747976 CGCTTGGGCCGAAAAGGG 61.748 66.667 0.54 7.78 41.48 3.95
336 337 2.671619 TCGCTTGGGCCGAAAAGG 60.672 61.111 0.54 0.00 44.97 3.11
337 338 2.690778 CCTCGCTTGGGCCGAAAAG 61.691 63.158 0.54 4.39 34.44 2.27
338 339 2.671619 CCTCGCTTGGGCCGAAAA 60.672 61.111 0.54 0.00 34.44 2.29
345 346 4.473520 ATGTCGGCCTCGCTTGGG 62.474 66.667 0.00 0.00 36.13 4.12
346 347 3.197790 CATGTCGGCCTCGCTTGG 61.198 66.667 0.00 0.00 36.13 3.61
347 348 3.197790 CCATGTCGGCCTCGCTTG 61.198 66.667 0.00 0.00 36.13 4.01
348 349 3.665675 GACCATGTCGGCCTCGCTT 62.666 63.158 0.00 0.00 39.03 4.68
349 350 4.148825 GACCATGTCGGCCTCGCT 62.149 66.667 0.00 0.00 39.03 4.93
350 351 2.363711 TATGACCATGTCGGCCTCGC 62.364 60.000 0.00 0.00 39.03 5.03
351 352 0.319040 CTATGACCATGTCGGCCTCG 60.319 60.000 0.00 0.00 39.03 4.63
352 353 0.753262 ACTATGACCATGTCGGCCTC 59.247 55.000 0.00 0.00 39.03 4.70
353 354 1.204146 AACTATGACCATGTCGGCCT 58.796 50.000 0.00 0.00 39.03 5.19
354 355 2.038387 AAACTATGACCATGTCGGCC 57.962 50.000 0.00 0.00 39.03 6.13
355 356 2.477863 GCAAAACTATGACCATGTCGGC 60.478 50.000 0.00 0.00 39.03 5.54
356 357 2.746904 TGCAAAACTATGACCATGTCGG 59.253 45.455 0.00 0.00 42.50 4.79
357 358 4.621068 ATGCAAAACTATGACCATGTCG 57.379 40.909 0.00 0.00 34.95 4.35
358 359 7.656707 AAAAATGCAAAACTATGACCATGTC 57.343 32.000 0.00 0.00 0.00 3.06
381 382 9.443323 TCGGAAACTATATCACAGAATGAAAAA 57.557 29.630 0.00 0.00 41.93 1.94
382 383 9.443323 TTCGGAAACTATATCACAGAATGAAAA 57.557 29.630 0.00 0.00 41.93 2.29
383 384 9.613428 ATTCGGAAACTATATCACAGAATGAAA 57.387 29.630 0.00 0.00 41.93 2.69
384 385 9.613428 AATTCGGAAACTATATCACAGAATGAA 57.387 29.630 0.00 0.00 41.93 2.57
385 386 9.613428 AAATTCGGAAACTATATCACAGAATGA 57.387 29.630 0.00 0.00 43.13 2.57
386 387 9.655769 CAAATTCGGAAACTATATCACAGAATG 57.344 33.333 0.00 0.00 46.00 2.67
387 388 8.345565 GCAAATTCGGAAACTATATCACAGAAT 58.654 33.333 0.00 0.00 0.00 2.40
388 389 7.552687 AGCAAATTCGGAAACTATATCACAGAA 59.447 33.333 0.00 0.00 0.00 3.02
389 390 7.047891 AGCAAATTCGGAAACTATATCACAGA 58.952 34.615 0.00 0.00 0.00 3.41
390 391 7.251704 AGCAAATTCGGAAACTATATCACAG 57.748 36.000 0.00 0.00 0.00 3.66
391 392 7.335673 TGAAGCAAATTCGGAAACTATATCACA 59.664 33.333 0.00 0.00 41.14 3.58
392 393 7.693952 TGAAGCAAATTCGGAAACTATATCAC 58.306 34.615 0.00 0.00 41.14 3.06
393 394 7.857734 TGAAGCAAATTCGGAAACTATATCA 57.142 32.000 0.00 0.00 41.14 2.15
394 395 9.567848 TTTTGAAGCAAATTCGGAAACTATATC 57.432 29.630 0.00 0.00 41.14 1.63
395 396 9.921637 TTTTTGAAGCAAATTCGGAAACTATAT 57.078 25.926 0.00 0.00 41.14 0.86
439 440 1.250840 GCCCGGTGAGCTGGATTTTT 61.251 55.000 0.00 0.00 43.97 1.94
440 441 1.678970 GCCCGGTGAGCTGGATTTT 60.679 57.895 0.00 0.00 43.97 1.82
441 442 2.044946 GCCCGGTGAGCTGGATTT 60.045 61.111 0.00 0.00 43.97 2.17
442 443 3.011517 AGCCCGGTGAGCTGGATT 61.012 61.111 2.61 0.00 43.97 3.01
479 480 4.056050 AGACGTTGACGCTCAAGTTTATT 58.944 39.130 3.05 0.00 44.43 1.40
491 492 0.597637 ACCTTCTGCAGACGTTGACG 60.598 55.000 18.03 3.85 46.33 4.35
494 495 0.583438 CACACCTTCTGCAGACGTTG 59.417 55.000 18.03 16.24 0.00 4.10
497 498 0.532862 AACCACACCTTCTGCAGACG 60.533 55.000 18.03 15.28 0.00 4.18
501 502 1.071699 GACCTAACCACACCTTCTGCA 59.928 52.381 0.00 0.00 0.00 4.41
504 505 4.490706 ACTAAGACCTAACCACACCTTCT 58.509 43.478 0.00 0.00 0.00 2.85
515 527 8.571461 TTAAATCTCAGTCGACTAAGACCTAA 57.429 34.615 20.77 16.49 41.83 2.69
521 533 8.918961 ACTTGATTAAATCTCAGTCGACTAAG 57.081 34.615 19.57 14.47 0.00 2.18
582 598 8.982685 CGTGAGATTATGCATTAAGATAAGTGT 58.017 33.333 3.54 0.00 0.00 3.55
592 608 9.822185 ATGCTATATTCGTGAGATTATGCATTA 57.178 29.630 3.54 0.00 41.51 1.90
603 619 5.035784 TCAGTCGATGCTATATTCGTGAG 57.964 43.478 0.00 0.00 36.74 3.51
608 624 6.382608 TGTTAGCTCAGTCGATGCTATATTC 58.617 40.000 11.24 5.94 38.80 1.75
616 632 4.489810 AGACTTTGTTAGCTCAGTCGATG 58.510 43.478 0.00 0.00 0.00 3.84
641 657 6.231211 ACAGTTTTGATAAGTCTCGGTCAAT 58.769 36.000 0.00 0.00 31.39 2.57
643 659 5.209818 ACAGTTTTGATAAGTCTCGGTCA 57.790 39.130 0.00 0.00 0.00 4.02
647 663 5.073478 GCGAAACAGTTTTGATAAGTCTCG 58.927 41.667 16.47 5.09 0.00 4.04
746 762 1.131638 AGCCCGGCAGAGAATATTCA 58.868 50.000 17.56 0.00 0.00 2.57
747 763 1.202698 ACAGCCCGGCAGAGAATATTC 60.203 52.381 13.15 7.41 0.00 1.75
887 904 7.961351 TCTGTCTCATTTCTCTCTCTTTTTCT 58.039 34.615 0.00 0.00 0.00 2.52
888 905 7.872483 ACTCTGTCTCATTTCTCTCTCTTTTTC 59.128 37.037 0.00 0.00 0.00 2.29
996 1017 2.552768 CGCGCGGATTGATGGATG 59.447 61.111 24.84 0.00 0.00 3.51
997 1018 3.349006 GCGCGCGGATTGATGGAT 61.349 61.111 33.06 0.00 0.00 3.41
998 1019 4.529219 AGCGCGCGGATTGATGGA 62.529 61.111 33.06 0.00 0.00 3.41
999 1020 2.971744 GAAAGCGCGCGGATTGATGG 62.972 60.000 33.06 0.00 0.00 3.51
1088 1112 3.197790 CATTGCTCCTGTCCCGCG 61.198 66.667 0.00 0.00 0.00 6.46
1157 1190 2.347490 GGGGAAGCAGACGAGCAA 59.653 61.111 0.00 0.00 36.85 3.91
1229 1262 3.953775 CACCGCCTTGTCCAGGGT 61.954 66.667 0.00 0.00 44.16 4.34
1309 1342 2.743183 CGGGCTACTAGTACTACCACGT 60.743 54.545 0.00 0.00 0.00 4.49
1342 1375 0.815734 CGGTCTCCTTCGCCTTAGAA 59.184 55.000 0.00 0.00 0.00 2.10
1441 1474 0.320683 TGACGTGCTTCTCCACCATG 60.321 55.000 0.00 0.00 32.10 3.66
1442 1475 0.396435 TTGACGTGCTTCTCCACCAT 59.604 50.000 0.00 0.00 32.10 3.55
1676 1712 2.125512 GCGCTCCTCCACGTCATT 60.126 61.111 0.00 0.00 0.00 2.57
1865 1919 2.279502 ATTAGGAGCAGCGCGTTCGA 62.280 55.000 8.43 0.00 38.10 3.71
1912 1966 1.301677 CTGCTCCTTTCCTCGCCAAC 61.302 60.000 0.00 0.00 0.00 3.77
1913 1967 1.003355 CTGCTCCTTTCCTCGCCAA 60.003 57.895 0.00 0.00 0.00 4.52
1916 1970 1.021920 GGTTCTGCTCCTTTCCTCGC 61.022 60.000 0.00 0.00 0.00 5.03
1970 2024 0.631753 TCGTCCCTCTTCTCCTCCAT 59.368 55.000 0.00 0.00 0.00 3.41
2014 2068 1.722034 TGGACAGCTTCAGGAAGTCT 58.278 50.000 10.47 5.72 40.45 3.24
2101 2155 1.935327 GCGCGACTAGAGGTCACCTT 61.935 60.000 12.10 0.00 44.70 3.50
2150 2204 0.107654 GCGAGGCACAAGGAAGGTAT 60.108 55.000 0.00 0.00 0.00 2.73
2216 2270 6.091713 ACATACTACCGTACAACATTTTCTGC 59.908 38.462 0.00 0.00 0.00 4.26
2290 2344 2.987282 ATCACCGCGTCACTTGTGCA 62.987 55.000 4.92 0.00 0.00 4.57
2291 2345 2.317609 ATCACCGCGTCACTTGTGC 61.318 57.895 4.92 0.00 0.00 4.57
2292 2346 0.943835 TCATCACCGCGTCACTTGTG 60.944 55.000 4.92 4.84 0.00 3.33
2293 2347 0.249699 TTCATCACCGCGTCACTTGT 60.250 50.000 4.92 0.00 0.00 3.16
2294 2348 0.865111 TTTCATCACCGCGTCACTTG 59.135 50.000 4.92 0.00 0.00 3.16
2295 2349 1.148310 CTTTCATCACCGCGTCACTT 58.852 50.000 4.92 0.00 0.00 3.16
2466 2550 2.364647 AGGCCGCAGTAGTAGTAATTCC 59.635 50.000 0.00 0.00 0.00 3.01
2473 2557 1.066587 GCTGAGGCCGCAGTAGTAG 59.933 63.158 33.18 12.19 38.17 2.57
2544 2667 5.482908 AGAGACCAATCCGTTATCATATGC 58.517 41.667 0.00 0.00 0.00 3.14
2560 2683 2.174854 TGGGATGTAGATCGAGAGACCA 59.825 50.000 0.00 0.00 46.97 4.02
2577 2700 0.609957 CTGATGCCTGCAGTTTGGGA 60.610 55.000 13.81 0.00 0.00 4.37
2775 2921 1.188219 AGGAGAGCTTTCACTGCCGA 61.188 55.000 6.59 0.00 0.00 5.54
2792 2947 1.207329 GTGTAAGTGACCAGGGCTAGG 59.793 57.143 0.00 0.00 0.00 3.02
2829 2998 1.428448 CGTTCCGATCTGTGAGCAAA 58.572 50.000 0.00 0.00 0.00 3.68
2846 3015 4.040445 AACAAATGTTTAGCACAAGCGT 57.960 36.364 0.00 0.00 39.71 5.07
2860 3029 9.932699 GTGATCATATCTTCAGAGAAACAAATG 57.067 33.333 0.00 0.00 35.07 2.32
2877 3046 6.002082 CCCATGTTCTGTCATGTGATCATAT 58.998 40.000 0.00 0.00 42.29 1.78
2881 3050 2.357009 GCCCATGTTCTGTCATGTGATC 59.643 50.000 11.86 0.00 42.29 2.92
2919 3088 3.517296 TGCCTTTTGGATGAACAGGTA 57.483 42.857 0.00 0.00 44.07 3.08
2923 3092 6.211184 ACTCATTAATGCCTTTTGGATGAACA 59.789 34.615 10.76 0.00 44.07 3.18
2924 3093 6.633856 ACTCATTAATGCCTTTTGGATGAAC 58.366 36.000 10.76 0.00 44.07 3.18
2925 3094 6.855763 ACTCATTAATGCCTTTTGGATGAA 57.144 33.333 10.76 0.00 44.07 2.57
2969 3141 5.353956 TGCGCTGAAACTAATGTAATCATGT 59.646 36.000 9.73 0.00 34.19 3.21
2981 3153 2.363788 AACTCGATGCGCTGAAACTA 57.636 45.000 9.73 0.00 0.00 2.24
2982 3154 2.094700 TCTAACTCGATGCGCTGAAACT 60.095 45.455 9.73 0.00 0.00 2.66
3058 3231 9.887406 AACGAATGTTTTTACGAATTTACAGAT 57.113 25.926 0.00 0.00 33.53 2.90
3060 3233 7.937294 GCAACGAATGTTTTTACGAATTTACAG 59.063 33.333 0.00 0.00 35.72 2.74
3066 3239 4.377445 CACGCAACGAATGTTTTTACGAAT 59.623 37.500 0.00 0.00 35.72 3.34
3111 3287 5.457148 CGCTCTTTGCTGTATAACTAGACTG 59.543 44.000 0.00 0.00 40.11 3.51
3137 3313 8.354486 TGATTCAGGATCCTATTATCCCTATCA 58.646 37.037 15.67 9.65 45.74 2.15
3144 3320 9.434420 CTTCAAGTGATTCAGGATCCTATTATC 57.566 37.037 15.67 16.63 33.60 1.75
3145 3321 8.381636 CCTTCAAGTGATTCAGGATCCTATTAT 58.618 37.037 15.67 8.04 33.60 1.28
3146 3322 7.690301 GCCTTCAAGTGATTCAGGATCCTATTA 60.690 40.741 15.67 2.80 33.60 0.98
3187 3363 2.047274 CCGGTGACATGGCGAACT 60.047 61.111 0.00 0.00 0.00 3.01
3263 3441 1.401905 GTTGCAGGGCCTAATTCTTCG 59.598 52.381 5.28 0.00 0.00 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.