Multiple sequence alignment - TraesCS5B01G191800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G191800 chr5B 100.000 2375 0 0 1 2375 345189424 345187050 0.000000e+00 4386
1 TraesCS5B01G191800 chr5B 93.152 2322 119 19 1 2287 638199712 638197396 0.000000e+00 3371
2 TraesCS5B01G191800 chr5B 91.554 1622 76 38 1 1596 209176274 209174688 0.000000e+00 2180
3 TraesCS5B01G191800 chr5B 91.262 1625 83 28 1 1603 265537630 265536043 0.000000e+00 2159
4 TraesCS5B01G191800 chr5B 93.570 762 42 6 1533 2290 209174710 209173952 0.000000e+00 1129
5 TraesCS5B01G191800 chr5B 98.864 88 1 0 2288 2375 58747067 58746980 8.790000e-35 158
6 TraesCS5B01G191800 chr6B 94.610 2319 88 16 1 2287 208208917 208211230 0.000000e+00 3555
7 TraesCS5B01G191800 chr6B 95.876 97 4 0 2279 2375 555996792 555996888 8.790000e-35 158
8 TraesCS5B01G191800 chr6B 95.876 97 4 0 2279 2375 556004878 556004974 8.790000e-35 158
9 TraesCS5B01G191800 chr6B 98.864 88 1 0 2288 2375 688975484 688975397 8.790000e-35 158
10 TraesCS5B01G191800 chr2B 92.097 2341 97 26 2 2287 739863629 739861322 0.000000e+00 3217
11 TraesCS5B01G191800 chr2B 91.115 2206 136 34 1 2168 51008872 51011055 0.000000e+00 2933
12 TraesCS5B01G191800 chr2B 94.257 1480 71 5 1 1470 103758490 103757015 0.000000e+00 2250
13 TraesCS5B01G191800 chr2B 90.189 1162 65 22 1146 2287 731071249 731072381 0.000000e+00 1469
14 TraesCS5B01G191800 chr2B 92.814 835 30 9 1475 2287 676206982 676206156 0.000000e+00 1182
15 TraesCS5B01G191800 chr2B 91.481 810 45 12 753 1556 700678545 700679336 0.000000e+00 1092
16 TraesCS5B01G191800 chr3B 92.337 1592 68 24 1 1562 228481163 228479596 0.000000e+00 2215
17 TraesCS5B01G191800 chr3B 90.855 1356 86 16 958 2292 765161417 765160079 0.000000e+00 1783
18 TraesCS5B01G191800 chr3B 94.682 771 31 8 1525 2287 228479607 228478839 0.000000e+00 1188
19 TraesCS5B01G191800 chr3A 91.713 1629 71 35 1 1603 153244958 153243368 0.000000e+00 2202
20 TraesCS5B01G191800 chr3A 92.049 566 20 12 1 549 710880114 710879557 0.000000e+00 773
21 TraesCS5B01G191800 chr5A 91.283 1629 78 28 1 1603 596914385 596915975 0.000000e+00 2163
22 TraesCS5B01G191800 chr1A 91.099 1629 78 32 1 1603 54871256 54869669 0.000000e+00 2143
23 TraesCS5B01G191800 chr1A 94.344 778 32 9 1517 2287 54869695 54868923 0.000000e+00 1182
24 TraesCS5B01G191800 chr7B 92.248 1419 80 6 1 1404 719311823 719310420 0.000000e+00 1984
25 TraesCS5B01G191800 chr7B 90.909 594 21 18 1 577 615589488 615588911 0.000000e+00 767
26 TraesCS5B01G191800 chr7B 91.696 566 22 12 1 549 164824312 164824869 0.000000e+00 761
27 TraesCS5B01G191800 chr7B 90.989 566 26 12 1 549 549109703 549109146 0.000000e+00 739
28 TraesCS5B01G191800 chr7B 95.876 97 4 0 2279 2375 155557507 155557603 8.790000e-35 158
29 TraesCS5B01G191800 chr7B 95.876 97 4 0 2279 2375 247211092 247211188 8.790000e-35 158
30 TraesCS5B01G191800 chr4A 89.525 1136 60 16 1187 2287 691376516 691375405 0.000000e+00 1384
31 TraesCS5B01G191800 chr6A 93.943 776 38 7 1517 2287 11910641 11909870 0.000000e+00 1164
32 TraesCS5B01G191800 chr4B 89.965 857 51 12 1454 2290 15054778 15053937 0.000000e+00 1074
33 TraesCS5B01G191800 chr2A 89.920 625 34 16 1 605 538629437 538628822 0.000000e+00 778
34 TraesCS5B01G191800 chrUn 91.873 566 21 12 1 549 38472742 38473299 0.000000e+00 767
35 TraesCS5B01G191800 chr1B 95.876 97 4 0 2279 2375 212496103 212496199 8.790000e-35 158
36 TraesCS5B01G191800 chr1B 98.864 88 1 0 2288 2375 523050673 523050586 8.790000e-35 158
37 TraesCS5B01G191800 chr1B 95.876 97 4 0 2279 2375 611553008 611553104 8.790000e-35 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G191800 chr5B 345187050 345189424 2374 True 4386.0 4386 100.0000 1 2375 1 chr5B.!!$R3 2374
1 TraesCS5B01G191800 chr5B 638197396 638199712 2316 True 3371.0 3371 93.1520 1 2287 1 chr5B.!!$R4 2286
2 TraesCS5B01G191800 chr5B 265536043 265537630 1587 True 2159.0 2159 91.2620 1 1603 1 chr5B.!!$R2 1602
3 TraesCS5B01G191800 chr5B 209173952 209176274 2322 True 1654.5 2180 92.5620 1 2290 2 chr5B.!!$R5 2289
4 TraesCS5B01G191800 chr6B 208208917 208211230 2313 False 3555.0 3555 94.6100 1 2287 1 chr6B.!!$F1 2286
5 TraesCS5B01G191800 chr2B 739861322 739863629 2307 True 3217.0 3217 92.0970 2 2287 1 chr2B.!!$R3 2285
6 TraesCS5B01G191800 chr2B 51008872 51011055 2183 False 2933.0 2933 91.1150 1 2168 1 chr2B.!!$F1 2167
7 TraesCS5B01G191800 chr2B 103757015 103758490 1475 True 2250.0 2250 94.2570 1 1470 1 chr2B.!!$R1 1469
8 TraesCS5B01G191800 chr2B 731071249 731072381 1132 False 1469.0 1469 90.1890 1146 2287 1 chr2B.!!$F3 1141
9 TraesCS5B01G191800 chr2B 676206156 676206982 826 True 1182.0 1182 92.8140 1475 2287 1 chr2B.!!$R2 812
10 TraesCS5B01G191800 chr2B 700678545 700679336 791 False 1092.0 1092 91.4810 753 1556 1 chr2B.!!$F2 803
11 TraesCS5B01G191800 chr3B 765160079 765161417 1338 True 1783.0 1783 90.8550 958 2292 1 chr3B.!!$R1 1334
12 TraesCS5B01G191800 chr3B 228478839 228481163 2324 True 1701.5 2215 93.5095 1 2287 2 chr3B.!!$R2 2286
13 TraesCS5B01G191800 chr3A 153243368 153244958 1590 True 2202.0 2202 91.7130 1 1603 1 chr3A.!!$R1 1602
14 TraesCS5B01G191800 chr3A 710879557 710880114 557 True 773.0 773 92.0490 1 549 1 chr3A.!!$R2 548
15 TraesCS5B01G191800 chr5A 596914385 596915975 1590 False 2163.0 2163 91.2830 1 1603 1 chr5A.!!$F1 1602
16 TraesCS5B01G191800 chr1A 54868923 54871256 2333 True 1662.5 2143 92.7215 1 2287 2 chr1A.!!$R1 2286
17 TraesCS5B01G191800 chr7B 719310420 719311823 1403 True 1984.0 1984 92.2480 1 1404 1 chr7B.!!$R3 1403
18 TraesCS5B01G191800 chr7B 615588911 615589488 577 True 767.0 767 90.9090 1 577 1 chr7B.!!$R2 576
19 TraesCS5B01G191800 chr7B 164824312 164824869 557 False 761.0 761 91.6960 1 549 1 chr7B.!!$F2 548
20 TraesCS5B01G191800 chr7B 549109146 549109703 557 True 739.0 739 90.9890 1 549 1 chr7B.!!$R1 548
21 TraesCS5B01G191800 chr4A 691375405 691376516 1111 True 1384.0 1384 89.5250 1187 2287 1 chr4A.!!$R1 1100
22 TraesCS5B01G191800 chr6A 11909870 11910641 771 True 1164.0 1164 93.9430 1517 2287 1 chr6A.!!$R1 770
23 TraesCS5B01G191800 chr4B 15053937 15054778 841 True 1074.0 1074 89.9650 1454 2290 1 chr4B.!!$R1 836
24 TraesCS5B01G191800 chr2A 538628822 538629437 615 True 778.0 778 89.9200 1 605 1 chr2A.!!$R1 604
25 TraesCS5B01G191800 chrUn 38472742 38473299 557 False 767.0 767 91.8730 1 549 1 chrUn.!!$F1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
536 567 0.877071 AGTCAGCTTTGATGCGGTTG 59.123 50.0 0.00 0.0 38.13 3.77 F
1217 1279 1.178276 GAGAGGTCCGAGCTTCAAGA 58.822 55.0 0.75 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1364 1426 0.447801 GCACAGCCATCAAACTACCG 59.552 55.0 0.0 0.0 0.00 4.02 R
2319 2642 0.541863 CCACGAAGGCTCACCCTATT 59.458 55.0 0.0 0.0 45.62 1.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
258 287 1.213182 TGGTTCCAGGCACTACACAAA 59.787 47.619 0.00 0.00 36.02 2.83
497 528 5.483685 AGTAAGTCACTCCATGCTTTGTA 57.516 39.130 0.00 0.00 28.33 2.41
532 563 4.271776 TGATTCATAGTCAGCTTTGATGCG 59.728 41.667 0.00 0.00 33.78 4.73
536 567 0.877071 AGTCAGCTTTGATGCGGTTG 59.123 50.000 0.00 0.00 38.13 3.77
554 585 4.186159 GGTTGGATGCTTTGATGATTTGG 58.814 43.478 0.00 0.00 0.00 3.28
563 594 5.879223 TGCTTTGATGATTTGGTGTTGTTTT 59.121 32.000 0.00 0.00 0.00 2.43
732 792 8.854979 TGTTGTTTGATAGTTCAACAAAGATG 57.145 30.769 7.04 0.00 44.20 2.90
759 819 7.661437 TCAGAACTTGATGTAGCTATTTGTTGT 59.339 33.333 0.00 0.00 0.00 3.32
805 866 8.868522 ATTTGATCTGAATGTTAGTCAGGAAA 57.131 30.769 6.46 4.69 42.37 3.13
815 876 8.511604 AATGTTAGTCAGGAAACCATCTTATG 57.488 34.615 0.00 0.00 0.00 1.90
1217 1279 1.178276 GAGAGGTCCGAGCTTCAAGA 58.822 55.000 0.75 0.00 0.00 3.02
1405 1481 5.037385 GCAGTTTGTCTTTGAACCTCTTTC 58.963 41.667 0.00 0.00 34.41 2.62
1415 1499 4.422073 TGAACCTCTTTCTCTTTGAGCA 57.578 40.909 0.00 0.00 34.97 4.26
1449 1589 6.150474 GGAGCTAAGGTAGTTGTTGCATTTTA 59.850 38.462 0.00 0.00 0.00 1.52
1484 1648 2.753452 AGGAGCTGAGATGTTGCATTTG 59.247 45.455 0.00 0.00 0.00 2.32
1508 1674 4.662468 TGCATTTTGCTGTTTGAACCTA 57.338 36.364 0.75 0.00 45.31 3.08
1515 1682 2.903784 TGCTGTTTGAACCTAGGAGCTA 59.096 45.455 17.98 0.48 0.00 3.32
1544 1755 6.540189 AGTTATGTGATCCTGTGAAGTTATGC 59.460 38.462 0.00 0.00 0.00 3.14
1572 1846 8.740123 TCTTGTGAACCTGTGTTTATTTTCTA 57.260 30.769 0.00 0.00 33.97 2.10
1610 1915 2.203337 GTGCACCTGGGCTTGTGA 60.203 61.111 5.22 0.00 34.37 3.58
1842 2150 7.416326 GGCCCAAAACAATAGTGGACTATAAAG 60.416 40.741 0.00 0.00 38.15 1.85
1889 2199 5.482163 TTCCCAGAAAATAAAAGGCCAAG 57.518 39.130 5.01 0.00 0.00 3.61
1896 2206 7.877612 CCAGAAAATAAAAGGCCAAGTTATTGT 59.122 33.333 5.01 6.85 34.39 2.71
1932 2245 7.755591 TGCACATAAGCAAAATAAAGAGAGAG 58.244 34.615 0.00 0.00 42.46 3.20
1948 2265 5.204292 AGAGAGAGAAAATTAAATGGGCCC 58.796 41.667 17.59 17.59 0.00 5.80
2041 2358 2.268298 GTCGTAATTCTGCCACGTCAT 58.732 47.619 0.00 0.00 37.02 3.06
2258 2581 9.625646 GTGACCATTCAGTGACCAATAGTGGTA 62.626 44.444 16.13 0.00 45.45 3.25
2291 2614 8.375506 AGTTGACATATTTCTTGTAGTGGAGAA 58.624 33.333 0.00 0.00 0.00 2.87
2292 2615 9.167311 GTTGACATATTTCTTGTAGTGGAGAAT 57.833 33.333 0.00 0.00 32.40 2.40
2293 2616 8.948631 TGACATATTTCTTGTAGTGGAGAATC 57.051 34.615 0.00 0.00 32.40 2.52
2294 2617 7.706607 TGACATATTTCTTGTAGTGGAGAATCG 59.293 37.037 0.00 0.00 34.37 3.34
2295 2618 6.480320 ACATATTTCTTGTAGTGGAGAATCGC 59.520 38.462 0.00 0.00 34.37 4.58
2296 2619 2.961526 TCTTGTAGTGGAGAATCGCC 57.038 50.000 0.00 0.00 34.37 5.54
2297 2620 2.457598 TCTTGTAGTGGAGAATCGCCT 58.542 47.619 4.37 0.00 34.37 5.52
2298 2621 2.832129 TCTTGTAGTGGAGAATCGCCTT 59.168 45.455 4.37 0.00 34.37 4.35
2299 2622 2.961526 TGTAGTGGAGAATCGCCTTC 57.038 50.000 4.37 0.00 34.37 3.46
2300 2623 2.176045 TGTAGTGGAGAATCGCCTTCA 58.824 47.619 4.37 0.00 36.24 3.02
2301 2624 2.766263 TGTAGTGGAGAATCGCCTTCAT 59.234 45.455 4.37 0.00 36.24 2.57
2302 2625 2.322355 AGTGGAGAATCGCCTTCATG 57.678 50.000 4.37 0.00 36.24 3.07
2303 2626 1.134280 AGTGGAGAATCGCCTTCATGG 60.134 52.381 4.37 0.00 36.24 3.66
2304 2627 0.911769 TGGAGAATCGCCTTCATGGT 59.088 50.000 4.37 0.00 36.24 3.55
2316 2639 4.070716 GCCTTCATGGTGATATCTCAAGG 58.929 47.826 13.44 13.44 38.35 3.61
2317 2640 4.202398 GCCTTCATGGTGATATCTCAAGGA 60.202 45.833 18.68 8.55 38.35 3.36
2318 2641 5.549347 CCTTCATGGTGATATCTCAAGGAG 58.451 45.833 12.84 8.54 31.85 3.69
2319 2642 5.306419 CCTTCATGGTGATATCTCAAGGAGA 59.694 44.000 12.84 0.00 43.20 3.71
2320 2643 6.183361 CCTTCATGGTGATATCTCAAGGAGAA 60.183 42.308 12.84 5.56 42.27 2.87
2321 2644 7.384524 TTCATGGTGATATCTCAAGGAGAAT 57.615 36.000 3.98 0.00 42.27 2.40
2322 2645 8.496534 TTCATGGTGATATCTCAAGGAGAATA 57.503 34.615 3.98 0.00 42.27 1.75
2323 2646 8.131847 TCATGGTGATATCTCAAGGAGAATAG 57.868 38.462 3.98 0.00 42.27 1.73
2324 2647 6.924913 TGGTGATATCTCAAGGAGAATAGG 57.075 41.667 3.98 0.00 42.27 2.57
2325 2648 5.782331 TGGTGATATCTCAAGGAGAATAGGG 59.218 44.000 3.98 0.00 42.27 3.53
2326 2649 5.782845 GGTGATATCTCAAGGAGAATAGGGT 59.217 44.000 3.98 0.00 42.27 4.34
2327 2650 6.295575 GGTGATATCTCAAGGAGAATAGGGTG 60.296 46.154 3.98 0.00 42.27 4.61
2328 2651 6.495181 GTGATATCTCAAGGAGAATAGGGTGA 59.505 42.308 3.98 0.00 42.27 4.02
2329 2652 6.723515 TGATATCTCAAGGAGAATAGGGTGAG 59.276 42.308 3.98 0.00 42.27 3.51
2330 2653 3.034635 TCTCAAGGAGAATAGGGTGAGC 58.965 50.000 0.00 0.00 35.59 4.26
2331 2654 2.103941 CTCAAGGAGAATAGGGTGAGCC 59.896 54.545 0.00 0.00 0.00 4.70
2332 2655 2.122768 CAAGGAGAATAGGGTGAGCCT 58.877 52.381 8.78 8.78 34.45 4.58
2333 2656 2.507471 CAAGGAGAATAGGGTGAGCCTT 59.493 50.000 9.14 0.00 34.80 4.35
2334 2657 2.403561 AGGAGAATAGGGTGAGCCTTC 58.596 52.381 9.14 0.56 34.45 3.46
2335 2658 1.069358 GGAGAATAGGGTGAGCCTTCG 59.931 57.143 9.14 0.00 34.45 3.79
2336 2659 1.757699 GAGAATAGGGTGAGCCTTCGT 59.242 52.381 9.14 0.00 34.45 3.85
2337 2660 1.482593 AGAATAGGGTGAGCCTTCGTG 59.517 52.381 9.14 0.00 34.45 4.35
2338 2661 0.541863 AATAGGGTGAGCCTTCGTGG 59.458 55.000 9.14 0.00 39.35 4.94
2347 2670 2.590575 CCTTCGTGGCGTTGGTGT 60.591 61.111 0.00 0.00 0.00 4.16
2348 2671 2.631428 CTTCGTGGCGTTGGTGTG 59.369 61.111 0.00 0.00 0.00 3.82
2349 2672 3.521308 CTTCGTGGCGTTGGTGTGC 62.521 63.158 0.00 0.00 0.00 4.57
2355 2678 3.354678 GCGTTGGTGTGCCTTCAT 58.645 55.556 0.00 0.00 35.27 2.57
2356 2679 1.081242 GCGTTGGTGTGCCTTCATG 60.081 57.895 0.00 0.00 35.27 3.07
2357 2680 1.580942 CGTTGGTGTGCCTTCATGG 59.419 57.895 0.00 0.00 39.35 3.66
2358 2681 1.172180 CGTTGGTGTGCCTTCATGGT 61.172 55.000 0.00 0.00 38.35 3.55
2359 2682 1.880221 CGTTGGTGTGCCTTCATGGTA 60.880 52.381 0.00 0.00 38.35 3.25
2360 2683 2.235016 GTTGGTGTGCCTTCATGGTAA 58.765 47.619 0.00 0.00 38.35 2.85
2361 2684 1.904287 TGGTGTGCCTTCATGGTAAC 58.096 50.000 0.00 0.00 38.35 2.50
2362 2685 1.143889 TGGTGTGCCTTCATGGTAACA 59.856 47.619 0.00 0.00 44.08 2.41
2364 2687 4.122547 TGGTGTGCCTTCATGGTAACATC 61.123 47.826 0.00 0.00 46.24 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
258 287 4.160252 AGTTCTCACAGTGGCAAAAATGTT 59.840 37.500 0.00 0.00 0.00 2.71
497 528 4.603131 ACTATGAATCAAACAGGGCATGT 58.397 39.130 0.00 0.00 46.97 3.21
532 563 4.186159 CCAAATCATCAAAGCATCCAACC 58.814 43.478 0.00 0.00 0.00 3.77
536 567 4.460948 ACACCAAATCATCAAAGCATCC 57.539 40.909 0.00 0.00 0.00 3.51
554 585 3.252458 ACTGGCTCCGAATAAAACAACAC 59.748 43.478 0.00 0.00 0.00 3.32
563 594 1.475034 GCATGGAACTGGCTCCGAATA 60.475 52.381 0.00 0.00 38.44 1.75
732 792 7.602517 ACAAATAGCTACATCAAGTTCTGAC 57.397 36.000 0.00 0.00 36.69 3.51
805 866 5.975988 ATGGTGGTTCTACATAAGATGGT 57.024 39.130 0.00 0.00 33.05 3.55
815 876 4.489306 AAGCCTAGAATGGTGGTTCTAC 57.511 45.455 0.00 0.00 39.15 2.59
1019 1081 1.122632 TTCACCTTCTGGTACCGGCA 61.123 55.000 16.58 4.05 46.60 5.69
1217 1279 4.021719 CCAATTCTTCTTGCACCACTTCAT 60.022 41.667 0.00 0.00 0.00 2.57
1302 1364 3.126831 CTGTTCTTGAGACTTCTTGCGT 58.873 45.455 0.00 0.00 0.00 5.24
1364 1426 0.447801 GCACAGCCATCAAACTACCG 59.552 55.000 0.00 0.00 0.00 4.02
1405 1481 2.149578 CCAGGTTCACTGCTCAAAGAG 58.850 52.381 0.00 0.00 46.14 2.85
1415 1499 2.031495 ACCTTAGCTCCAGGTTCACT 57.969 50.000 11.13 0.00 42.45 3.41
1449 1589 2.039084 CAGCTCCTAGGTTCACAGGTTT 59.961 50.000 9.08 0.00 33.37 3.27
1508 1674 5.843421 AGGATCACATAACTTCATAGCTCCT 59.157 40.000 0.00 0.00 0.00 3.69
1515 1682 6.715280 ACTTCACAGGATCACATAACTTCAT 58.285 36.000 0.00 0.00 0.00 2.57
1544 1755 5.862924 ATAAACACAGGTTCACAAGATCG 57.137 39.130 0.00 0.00 35.82 3.69
1572 1846 5.124457 GCACAAGTGATCCACATAACTTCAT 59.876 40.000 4.04 0.00 31.84 2.57
1610 1915 1.614317 GGCCTAGGTGCACAAGTGATT 60.614 52.381 20.43 0.00 0.00 2.57
1765 2073 6.078664 TGGGCCTTGGACTTTTTATTTTCTA 58.921 36.000 4.53 0.00 0.00 2.10
1779 2087 2.688477 AGTTCAAATTTGGGCCTTGGA 58.312 42.857 17.90 0.00 0.00 3.53
1842 2150 6.458210 TGGAGCCTTTTTCTGATGAATTTTC 58.542 36.000 0.00 0.00 31.56 2.29
1889 2199 4.432601 TGGGCCTGGCACAATAAC 57.567 55.556 23.77 0.00 39.83 1.89
1896 2206 2.511457 TTATGTGCATGGGCCTGGCA 62.511 55.000 22.05 16.86 40.13 4.92
2041 2358 1.191489 TCAGATCCACCGTGGCAAGA 61.191 55.000 13.19 5.34 37.47 3.02
2291 2614 3.580022 TGAGATATCACCATGAAGGCGAT 59.420 43.478 5.32 0.00 41.88 4.58
2292 2615 2.965147 TGAGATATCACCATGAAGGCGA 59.035 45.455 5.32 0.00 43.14 5.54
2293 2616 3.391506 TGAGATATCACCATGAAGGCG 57.608 47.619 5.32 0.00 43.14 5.52
2294 2617 4.070716 CCTTGAGATATCACCATGAAGGC 58.929 47.826 5.32 0.00 43.14 4.35
2295 2618 5.306419 TCTCCTTGAGATATCACCATGAAGG 59.694 44.000 5.32 7.88 37.29 3.46
2296 2619 6.416631 TCTCCTTGAGATATCACCATGAAG 57.583 41.667 5.32 0.00 33.35 3.02
2297 2620 6.813293 TTCTCCTTGAGATATCACCATGAA 57.187 37.500 5.32 0.00 38.56 2.57
2298 2621 7.179872 CCTATTCTCCTTGAGATATCACCATGA 59.820 40.741 5.32 2.58 38.56 3.07
2299 2622 7.329499 CCTATTCTCCTTGAGATATCACCATG 58.671 42.308 5.32 5.04 38.56 3.66
2300 2623 6.443206 CCCTATTCTCCTTGAGATATCACCAT 59.557 42.308 5.32 0.00 38.56 3.55
2301 2624 5.782331 CCCTATTCTCCTTGAGATATCACCA 59.218 44.000 5.32 0.00 38.56 4.17
2302 2625 5.782845 ACCCTATTCTCCTTGAGATATCACC 59.217 44.000 5.32 0.00 38.56 4.02
2303 2626 6.495181 TCACCCTATTCTCCTTGAGATATCAC 59.505 42.308 5.32 0.00 38.56 3.06
2304 2627 6.624297 TCACCCTATTCTCCTTGAGATATCA 58.376 40.000 5.32 0.00 38.56 2.15
2305 2628 6.350949 GCTCACCCTATTCTCCTTGAGATATC 60.351 46.154 0.00 0.00 38.56 1.63
2306 2629 5.483583 GCTCACCCTATTCTCCTTGAGATAT 59.516 44.000 0.00 0.00 38.56 1.63
2307 2630 4.835615 GCTCACCCTATTCTCCTTGAGATA 59.164 45.833 0.00 0.00 38.56 1.98
2308 2631 3.645687 GCTCACCCTATTCTCCTTGAGAT 59.354 47.826 0.00 0.00 38.56 2.75
2309 2632 3.034635 GCTCACCCTATTCTCCTTGAGA 58.965 50.000 0.00 0.00 36.86 3.27
2310 2633 2.103941 GGCTCACCCTATTCTCCTTGAG 59.896 54.545 0.00 0.00 34.77 3.02
2311 2634 2.119495 GGCTCACCCTATTCTCCTTGA 58.881 52.381 0.00 0.00 0.00 3.02
2312 2635 2.122768 AGGCTCACCCTATTCTCCTTG 58.877 52.381 0.00 0.00 44.08 3.61
2313 2636 2.577772 AGGCTCACCCTATTCTCCTT 57.422 50.000 0.00 0.00 44.08 3.36
2314 2637 2.403561 GAAGGCTCACCCTATTCTCCT 58.596 52.381 0.00 0.00 45.62 3.69
2315 2638 1.069358 CGAAGGCTCACCCTATTCTCC 59.931 57.143 0.00 0.00 45.62 3.71
2316 2639 1.757699 ACGAAGGCTCACCCTATTCTC 59.242 52.381 0.00 0.00 45.62 2.87
2317 2640 1.482593 CACGAAGGCTCACCCTATTCT 59.517 52.381 0.00 0.00 45.62 2.40
2318 2641 1.473434 CCACGAAGGCTCACCCTATTC 60.473 57.143 0.00 0.00 45.62 1.75
2319 2642 0.541863 CCACGAAGGCTCACCCTATT 59.458 55.000 0.00 0.00 45.62 1.73
2320 2643 2.212327 CCACGAAGGCTCACCCTAT 58.788 57.895 0.00 0.00 45.62 2.57
2321 2644 3.708210 CCACGAAGGCTCACCCTA 58.292 61.111 0.00 0.00 45.62 3.53
2330 2653 2.590575 ACACCAACGCCACGAAGG 60.591 61.111 0.00 0.00 41.84 3.46
2331 2654 2.631428 CACACCAACGCCACGAAG 59.369 61.111 0.00 0.00 0.00 3.79
2332 2655 3.578272 GCACACCAACGCCACGAA 61.578 61.111 0.00 0.00 0.00 3.85
2338 2661 1.081242 CATGAAGGCACACCAACGC 60.081 57.895 0.00 0.00 39.06 4.84
2339 2662 1.172180 ACCATGAAGGCACACCAACG 61.172 55.000 0.00 0.00 43.14 4.10
2340 2663 1.904287 TACCATGAAGGCACACCAAC 58.096 50.000 0.00 0.00 43.14 3.77
2341 2664 2.235016 GTTACCATGAAGGCACACCAA 58.765 47.619 0.00 0.00 43.14 3.67
2342 2665 1.143889 TGTTACCATGAAGGCACACCA 59.856 47.619 0.00 0.00 43.14 4.17
2343 2666 1.904287 TGTTACCATGAAGGCACACC 58.096 50.000 0.00 0.00 43.14 4.16
2344 2667 2.423538 GGATGTTACCATGAAGGCACAC 59.576 50.000 0.00 0.00 43.14 3.82
2345 2668 2.040947 TGGATGTTACCATGAAGGCACA 59.959 45.455 0.00 0.00 43.14 4.57
2346 2669 2.423538 GTGGATGTTACCATGAAGGCAC 59.576 50.000 0.00 0.00 43.14 5.01
2347 2670 2.620367 GGTGGATGTTACCATGAAGGCA 60.620 50.000 0.00 0.00 43.14 4.75
2348 2671 2.024414 GGTGGATGTTACCATGAAGGC 58.976 52.381 0.00 0.00 43.14 4.35
2349 2672 3.200825 AGAGGTGGATGTTACCATGAAGG 59.799 47.826 0.00 0.00 42.17 3.46
2350 2673 4.163078 AGAGAGGTGGATGTTACCATGAAG 59.837 45.833 0.00 0.00 42.17 3.02
2351 2674 4.104086 AGAGAGGTGGATGTTACCATGAA 58.896 43.478 0.00 0.00 42.17 2.57
2352 2675 3.724478 AGAGAGGTGGATGTTACCATGA 58.276 45.455 0.00 0.00 42.17 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.