Multiple sequence alignment - TraesCS5B01G191200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G191200 chr5B 100.000 4311 0 0 1 4311 344941839 344946149 0.000000e+00 7962.0
1 TraesCS5B01G191200 chr5B 93.388 121 7 1 1323 1443 690968113 690968232 1.230000e-40 178.0
2 TraesCS5B01G191200 chr5D 94.447 2125 68 27 1440 3537 301994598 301996699 0.000000e+00 3225.0
3 TraesCS5B01G191200 chr5D 81.997 661 83 20 3658 4311 301996821 301997452 2.950000e-146 529.0
4 TraesCS5B01G191200 chr5D 86.245 458 48 9 879 1323 301994141 301994596 2.330000e-132 483.0
5 TraesCS5B01G191200 chr5D 91.718 326 18 7 433 757 301993827 301994144 1.100000e-120 444.0
6 TraesCS5B01G191200 chr5D 90.698 129 10 2 1317 1443 97831849 97831721 2.060000e-38 171.0
7 TraesCS5B01G191200 chr5D 84.466 103 16 0 1082 1184 135706161 135706059 7.630000e-18 102.0
8 TraesCS5B01G191200 chr5A 91.626 2030 89 40 1442 3436 395853392 395851409 0.000000e+00 2732.0
9 TraesCS5B01G191200 chr5A 83.435 658 100 5 3656 4310 395851056 395850405 1.720000e-168 603.0
10 TraesCS5B01G191200 chr5A 89.231 325 32 3 432 756 395854035 395853714 1.870000e-108 403.0
11 TraesCS5B01G191200 chr5A 92.617 149 8 3 738 885 662382612 662382758 1.210000e-50 211.0
12 TraesCS5B01G191200 chr5A 91.262 103 3 2 3437 3537 395851246 395851148 7.520000e-28 135.0
13 TraesCS5B01G191200 chr5A 89.333 75 3 2 3538 3612 395851125 395851056 5.940000e-14 89.8
14 TraesCS5B01G191200 chr3B 96.532 173 4 2 261 432 114139601 114139772 7.060000e-73 285.0
15 TraesCS5B01G191200 chr3B 79.351 339 59 8 2198 2532 787655026 787654695 1.210000e-55 228.0
16 TraesCS5B01G191200 chr3B 97.436 117 3 0 1324 1440 54761493 54761377 2.630000e-47 200.0
17 TraesCS5B01G191200 chr3B 96.774 31 1 0 3618 3648 74767987 74767957 8.000000e-03 52.8
18 TraesCS5B01G191200 chr7B 97.059 170 2 2 268 435 34019854 34019686 2.540000e-72 283.0
19 TraesCS5B01G191200 chr7B 96.512 172 4 2 267 437 732116367 732116537 2.540000e-72 283.0
20 TraesCS5B01G191200 chr7B 95.620 137 6 0 752 888 281384161 281384025 2.020000e-53 220.0
21 TraesCS5B01G191200 chr7B 95.868 121 4 1 1324 1443 426535652 426535772 1.220000e-45 195.0
22 TraesCS5B01G191200 chr7B 92.248 129 9 1 1319 1447 141814435 141814562 9.520000e-42 182.0
23 TraesCS5B01G191200 chr1B 95.480 177 6 1 258 432 625778281 625778105 9.130000e-72 281.0
24 TraesCS5B01G191200 chr1B 97.059 34 1 0 3629 3662 485673050 485673017 1.670000e-04 58.4
25 TraesCS5B01G191200 chr1B 100.000 30 0 0 3626 3655 4494371 4494342 6.020000e-04 56.5
26 TraesCS5B01G191200 chr6A 94.022 184 7 4 266 447 217625818 217625637 4.250000e-70 276.0
27 TraesCS5B01G191200 chr6A 95.000 140 5 2 755 893 563743221 563743359 7.260000e-53 219.0
28 TraesCS5B01G191200 chr4B 93.617 188 6 6 265 449 110315491 110315307 4.250000e-70 276.0
29 TraesCS5B01G191200 chr4B 84.043 94 15 0 1092 1185 59225236 59225329 1.650000e-14 91.6
30 TraesCS5B01G191200 chr2A 94.413 179 8 2 252 430 572434000 572433824 1.530000e-69 274.0
31 TraesCS5B01G191200 chr2A 97.059 34 1 0 3627 3660 84364413 84364380 1.670000e-04 58.4
32 TraesCS5B01G191200 chr6B 95.349 172 4 3 261 429 69560873 69561043 1.980000e-68 270.0
33 TraesCS5B01G191200 chr6B 91.414 198 12 5 254 450 100904713 100904906 2.560000e-67 267.0
34 TraesCS5B01G191200 chrUn 98.438 128 2 0 755 882 17025259 17025386 4.340000e-55 226.0
35 TraesCS5B01G191200 chrUn 98.438 128 2 0 755 882 17027492 17027619 4.340000e-55 226.0
36 TraesCS5B01G191200 chrUn 98.438 128 2 0 755 882 292131187 292131060 4.340000e-55 226.0
37 TraesCS5B01G191200 chrUn 98.438 128 2 0 755 882 302852257 302852130 4.340000e-55 226.0
38 TraesCS5B01G191200 chrUn 94.783 115 6 0 1324 1438 454899357 454899471 3.430000e-41 180.0
39 TraesCS5B01G191200 chrUn 81.188 101 17 2 1088 1187 314337032 314336933 3.570000e-11 80.5
40 TraesCS5B01G191200 chrUn 81.188 101 17 2 1088 1187 314340746 314340647 3.570000e-11 80.5
41 TraesCS5B01G191200 chrUn 81.188 101 17 2 1088 1187 339406702 339406603 3.570000e-11 80.5
42 TraesCS5B01G191200 chr4A 95.652 138 5 1 754 890 200095853 200095990 2.020000e-53 220.0
43 TraesCS5B01G191200 chr4A 84.762 105 15 1 1084 1187 743286712 743286608 2.120000e-18 104.0
44 TraesCS5B01G191200 chr1A 94.964 139 7 0 746 884 486045908 486045770 7.260000e-53 219.0
45 TraesCS5B01G191200 chr3D 78.963 328 59 10 2198 2520 589153985 589154307 9.390000e-52 215.0
46 TraesCS5B01G191200 chr3A 78.659 328 60 10 2198 2520 719195022 719194700 4.370000e-50 209.0
47 TraesCS5B01G191200 chr1D 92.188 128 9 1 1320 1446 1591095 1591222 3.430000e-41 180.0
48 TraesCS5B01G191200 chr1D 84.375 128 20 0 1043 1170 233478288 233478415 4.530000e-25 126.0
49 TraesCS5B01G191200 chr2B 94.017 117 7 0 1324 1440 31065521 31065637 1.230000e-40 178.0
50 TraesCS5B01G191200 chr2B 92.562 121 8 1 1324 1443 713688510 713688390 5.730000e-39 172.0
51 TraesCS5B01G191200 chr7A 79.720 143 27 2 1044 1186 147133806 147133666 7.630000e-18 102.0
52 TraesCS5B01G191200 chr6D 100.000 28 0 0 3635 3662 446478190 446478163 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G191200 chr5B 344941839 344946149 4310 False 7962.00 7962 100.00000 1 4311 1 chr5B.!!$F1 4310
1 TraesCS5B01G191200 chr5D 301993827 301997452 3625 False 1170.25 3225 88.60175 433 4311 4 chr5D.!!$F1 3878
2 TraesCS5B01G191200 chr5A 395850405 395854035 3630 True 792.56 2732 88.97740 432 4310 5 chr5A.!!$R1 3878
3 TraesCS5B01G191200 chrUn 17025259 17027619 2360 False 226.00 226 98.43800 755 882 2 chrUn.!!$F2 127

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
218 219 0.040058 AAGACATGCCCATGCCTTCA 59.960 50.0 8.11 0.00 36.96 3.02 F
401 402 0.102300 GGTTTACAATCATGCGCCCC 59.898 55.0 4.18 0.00 0.00 5.80 F
403 404 0.323816 TTTACAATCATGCGCCCCCA 60.324 50.0 4.18 0.00 0.00 4.96 F
1338 3088 0.324091 AACATACTCCCTCCGTCCGT 60.324 55.0 0.00 0.00 0.00 4.69 F
2748 4555 0.038526 AGAAACACCAGCCGTACGAG 60.039 55.0 18.76 8.15 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2075 3867 0.035630 AGCAGTTGTGATCTGGAGGC 60.036 55.000 0.00 0.00 33.98 4.70 R
2109 3901 0.988832 AGGGATTGGCGGAGTTGTTA 59.011 50.000 0.00 0.00 0.00 2.41 R
2114 3912 2.041265 AGGAGGGATTGGCGGAGT 59.959 61.111 0.00 0.00 0.00 3.85 R
3148 4958 0.031857 CGTTCCAACCTTTGCATGCA 59.968 50.000 18.46 18.46 0.00 3.96 R
3731 5763 0.250858 TCACCGACTCGACTAACCCA 60.251 55.000 0.00 0.00 0.00 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 7.608376 AGTTCCTCTTTATTCTCTAAAACTGGC 59.392 37.037 0.00 0.00 0.00 4.85
71 72 7.259088 TCCTCTTTATTCTCTAAAACTGGCT 57.741 36.000 0.00 0.00 0.00 4.75
72 73 7.331791 TCCTCTTTATTCTCTAAAACTGGCTC 58.668 38.462 0.00 0.00 0.00 4.70
73 74 6.540551 CCTCTTTATTCTCTAAAACTGGCTCC 59.459 42.308 0.00 0.00 0.00 4.70
74 75 7.259088 TCTTTATTCTCTAAAACTGGCTCCT 57.741 36.000 0.00 0.00 0.00 3.69
75 76 8.375493 TCTTTATTCTCTAAAACTGGCTCCTA 57.625 34.615 0.00 0.00 0.00 2.94
76 77 8.822805 TCTTTATTCTCTAAAACTGGCTCCTAA 58.177 33.333 0.00 0.00 0.00 2.69
77 78 9.103861 CTTTATTCTCTAAAACTGGCTCCTAAG 57.896 37.037 0.00 0.00 0.00 2.18
78 79 6.628644 ATTCTCTAAAACTGGCTCCTAAGT 57.371 37.500 0.00 0.00 0.00 2.24
79 80 5.662674 TCTCTAAAACTGGCTCCTAAGTC 57.337 43.478 0.00 0.00 0.00 3.01
80 81 4.466726 TCTCTAAAACTGGCTCCTAAGTCC 59.533 45.833 0.00 0.00 0.00 3.85
81 82 4.426704 TCTAAAACTGGCTCCTAAGTCCT 58.573 43.478 0.00 0.00 0.00 3.85
82 83 5.586877 TCTAAAACTGGCTCCTAAGTCCTA 58.413 41.667 0.00 0.00 0.00 2.94
83 84 6.021030 TCTAAAACTGGCTCCTAAGTCCTAA 58.979 40.000 0.00 0.00 0.00 2.69
84 85 5.780958 AAAACTGGCTCCTAAGTCCTAAT 57.219 39.130 0.00 0.00 0.00 1.73
85 86 4.762289 AACTGGCTCCTAAGTCCTAATG 57.238 45.455 0.00 0.00 0.00 1.90
86 87 2.436173 ACTGGCTCCTAAGTCCTAATGC 59.564 50.000 0.00 0.00 0.00 3.56
87 88 2.435805 CTGGCTCCTAAGTCCTAATGCA 59.564 50.000 0.00 0.00 0.00 3.96
88 89 2.843730 TGGCTCCTAAGTCCTAATGCAA 59.156 45.455 0.00 0.00 0.00 4.08
89 90 3.206964 GGCTCCTAAGTCCTAATGCAAC 58.793 50.000 0.00 0.00 0.00 4.17
90 91 3.370527 GGCTCCTAAGTCCTAATGCAACA 60.371 47.826 0.00 0.00 0.00 3.33
91 92 4.455606 GCTCCTAAGTCCTAATGCAACAT 58.544 43.478 0.00 0.00 0.00 2.71
92 93 4.513318 GCTCCTAAGTCCTAATGCAACATC 59.487 45.833 0.00 0.00 0.00 3.06
93 94 5.674525 CTCCTAAGTCCTAATGCAACATCA 58.325 41.667 0.00 0.00 0.00 3.07
94 95 6.252599 TCCTAAGTCCTAATGCAACATCAT 57.747 37.500 0.00 0.00 0.00 2.45
95 96 6.057533 TCCTAAGTCCTAATGCAACATCATG 58.942 40.000 0.00 0.00 0.00 3.07
96 97 5.824624 CCTAAGTCCTAATGCAACATCATGT 59.175 40.000 0.00 0.00 0.00 3.21
97 98 6.319658 CCTAAGTCCTAATGCAACATCATGTT 59.680 38.462 0.00 0.00 42.08 2.71
98 99 7.498900 CCTAAGTCCTAATGCAACATCATGTTA 59.501 37.037 1.72 0.00 38.77 2.41
99 100 7.701539 AAGTCCTAATGCAACATCATGTTAA 57.298 32.000 1.72 0.00 38.77 2.01
100 101 7.325660 AGTCCTAATGCAACATCATGTTAAG 57.674 36.000 1.72 0.00 38.77 1.85
101 102 5.973565 GTCCTAATGCAACATCATGTTAAGC 59.026 40.000 1.72 4.25 38.77 3.09
102 103 5.067674 TCCTAATGCAACATCATGTTAAGCC 59.932 40.000 1.72 0.00 38.77 4.35
103 104 4.804868 AATGCAACATCATGTTAAGCCA 57.195 36.364 1.72 0.00 38.77 4.75
104 105 3.574284 TGCAACATCATGTTAAGCCAC 57.426 42.857 1.72 0.00 38.77 5.01
105 106 2.889678 TGCAACATCATGTTAAGCCACA 59.110 40.909 1.72 0.00 38.77 4.17
106 107 3.510753 TGCAACATCATGTTAAGCCACAT 59.489 39.130 1.72 0.00 38.77 3.21
107 108 4.107622 GCAACATCATGTTAAGCCACATC 58.892 43.478 1.72 0.00 38.77 3.06
108 109 4.345288 CAACATCATGTTAAGCCACATCG 58.655 43.478 1.72 0.00 38.77 3.84
109 110 3.609853 ACATCATGTTAAGCCACATCGT 58.390 40.909 0.00 0.00 35.03 3.73
110 111 4.009675 ACATCATGTTAAGCCACATCGTT 58.990 39.130 0.00 0.00 35.03 3.85
111 112 4.094887 ACATCATGTTAAGCCACATCGTTC 59.905 41.667 0.00 0.00 35.03 3.95
112 113 3.937814 TCATGTTAAGCCACATCGTTCT 58.062 40.909 0.00 0.00 35.03 3.01
113 114 5.079689 TCATGTTAAGCCACATCGTTCTA 57.920 39.130 0.00 0.00 35.03 2.10
114 115 4.868171 TCATGTTAAGCCACATCGTTCTAC 59.132 41.667 0.00 0.00 35.03 2.59
115 116 4.260139 TGTTAAGCCACATCGTTCTACA 57.740 40.909 0.00 0.00 0.00 2.74
116 117 4.633175 TGTTAAGCCACATCGTTCTACAA 58.367 39.130 0.00 0.00 0.00 2.41
117 118 4.688879 TGTTAAGCCACATCGTTCTACAAG 59.311 41.667 0.00 0.00 0.00 3.16
118 119 3.678056 AAGCCACATCGTTCTACAAGA 57.322 42.857 0.00 0.00 0.00 3.02
119 120 3.678056 AGCCACATCGTTCTACAAGAA 57.322 42.857 0.00 0.00 0.00 2.52
120 121 3.589988 AGCCACATCGTTCTACAAGAAG 58.410 45.455 0.00 0.00 34.42 2.85
121 122 3.006967 AGCCACATCGTTCTACAAGAAGT 59.993 43.478 0.00 0.00 34.42 3.01
122 123 3.746492 GCCACATCGTTCTACAAGAAGTT 59.254 43.478 0.00 0.00 34.42 2.66
123 124 4.377431 GCCACATCGTTCTACAAGAAGTTG 60.377 45.833 0.00 0.00 34.42 3.16
125 126 5.924254 CCACATCGTTCTACAAGAAGTTGTA 59.076 40.000 0.00 0.00 45.48 2.41
151 152 8.887717 AGAATTATATTAAGCATCGATCAAGGC 58.112 33.333 0.00 0.00 0.00 4.35
152 153 6.985188 TTATATTAAGCATCGATCAAGGCC 57.015 37.500 0.00 0.00 0.00 5.19
153 154 2.708216 TTAAGCATCGATCAAGGCCA 57.292 45.000 5.01 0.00 0.00 5.36
154 155 2.708216 TAAGCATCGATCAAGGCCAA 57.292 45.000 5.01 0.00 0.00 4.52
155 156 1.386533 AAGCATCGATCAAGGCCAAG 58.613 50.000 5.01 0.00 0.00 3.61
156 157 0.254178 AGCATCGATCAAGGCCAAGT 59.746 50.000 5.01 0.00 0.00 3.16
157 158 1.098050 GCATCGATCAAGGCCAAGTT 58.902 50.000 5.01 0.00 0.00 2.66
158 159 1.064654 GCATCGATCAAGGCCAAGTTC 59.935 52.381 5.01 0.12 0.00 3.01
159 160 2.636830 CATCGATCAAGGCCAAGTTCT 58.363 47.619 5.01 0.00 0.00 3.01
160 161 2.859165 TCGATCAAGGCCAAGTTCTT 57.141 45.000 5.01 0.00 0.00 2.52
161 162 2.426522 TCGATCAAGGCCAAGTTCTTG 58.573 47.619 5.01 0.00 41.06 3.02
162 163 1.470098 CGATCAAGGCCAAGTTCTTGG 59.530 52.381 22.75 22.75 44.82 3.61
171 172 3.030668 CCAAGTTCTTGGCAATTGGAC 57.969 47.619 20.56 7.08 42.46 4.02
172 173 2.289010 CCAAGTTCTTGGCAATTGGACC 60.289 50.000 20.56 1.11 42.46 4.46
173 174 1.632589 AGTTCTTGGCAATTGGACCC 58.367 50.000 7.72 0.33 0.00 4.46
174 175 1.133199 AGTTCTTGGCAATTGGACCCA 60.133 47.619 7.72 3.27 0.00 4.51
175 176 1.901833 GTTCTTGGCAATTGGACCCAT 59.098 47.619 7.72 0.00 0.00 4.00
176 177 1.559368 TCTTGGCAATTGGACCCATG 58.441 50.000 7.72 8.55 0.00 3.66
177 178 1.076841 TCTTGGCAATTGGACCCATGA 59.923 47.619 7.72 10.61 32.41 3.07
178 179 1.901159 CTTGGCAATTGGACCCATGAA 59.099 47.619 7.72 0.00 0.00 2.57
179 180 1.265236 TGGCAATTGGACCCATGAAC 58.735 50.000 7.72 0.00 0.00 3.18
180 181 1.265236 GGCAATTGGACCCATGAACA 58.735 50.000 7.72 0.00 0.00 3.18
181 182 1.066929 GGCAATTGGACCCATGAACAC 60.067 52.381 7.72 0.00 0.00 3.32
182 183 1.066929 GCAATTGGACCCATGAACACC 60.067 52.381 7.72 0.00 0.00 4.16
183 184 1.550072 CAATTGGACCCATGAACACCC 59.450 52.381 0.00 0.00 0.00 4.61
184 185 0.783206 ATTGGACCCATGAACACCCA 59.217 50.000 0.00 0.00 0.00 4.51
185 186 0.783206 TTGGACCCATGAACACCCAT 59.217 50.000 0.00 0.00 0.00 4.00
186 187 1.675007 TGGACCCATGAACACCCATA 58.325 50.000 0.00 0.00 0.00 2.74
187 188 2.213310 TGGACCCATGAACACCCATAT 58.787 47.619 0.00 0.00 0.00 1.78
188 189 2.174639 TGGACCCATGAACACCCATATC 59.825 50.000 0.00 0.00 0.00 1.63
189 190 2.489073 GGACCCATGAACACCCATATCC 60.489 54.545 0.00 0.00 0.00 2.59
190 191 2.443255 GACCCATGAACACCCATATCCT 59.557 50.000 0.00 0.00 0.00 3.24
191 192 2.858768 ACCCATGAACACCCATATCCTT 59.141 45.455 0.00 0.00 0.00 3.36
192 193 3.117512 ACCCATGAACACCCATATCCTTC 60.118 47.826 0.00 0.00 0.00 3.46
193 194 3.141398 CCATGAACACCCATATCCTTCG 58.859 50.000 0.00 0.00 0.00 3.79
194 195 3.433598 CCATGAACACCCATATCCTTCGT 60.434 47.826 0.00 0.00 0.00 3.85
195 196 3.992943 TGAACACCCATATCCTTCGTT 57.007 42.857 0.00 0.00 0.00 3.85
196 197 3.605634 TGAACACCCATATCCTTCGTTG 58.394 45.455 0.00 0.00 0.00 4.10
197 198 3.262151 TGAACACCCATATCCTTCGTTGA 59.738 43.478 0.00 0.00 0.00 3.18
198 199 3.992943 ACACCCATATCCTTCGTTGAA 57.007 42.857 0.00 0.00 0.00 2.69
199 200 4.295141 ACACCCATATCCTTCGTTGAAA 57.705 40.909 0.00 0.00 0.00 2.69
200 201 4.658063 ACACCCATATCCTTCGTTGAAAA 58.342 39.130 0.00 0.00 0.00 2.29
201 202 4.700213 ACACCCATATCCTTCGTTGAAAAG 59.300 41.667 0.00 0.00 0.00 2.27
202 203 4.941263 CACCCATATCCTTCGTTGAAAAGA 59.059 41.667 0.00 0.00 0.00 2.52
203 204 4.941873 ACCCATATCCTTCGTTGAAAAGAC 59.058 41.667 0.00 0.00 0.00 3.01
204 205 4.941263 CCCATATCCTTCGTTGAAAAGACA 59.059 41.667 0.00 0.00 0.00 3.41
205 206 5.590259 CCCATATCCTTCGTTGAAAAGACAT 59.410 40.000 0.00 0.00 0.00 3.06
206 207 6.458751 CCCATATCCTTCGTTGAAAAGACATG 60.459 42.308 0.00 0.00 0.00 3.21
207 208 3.896648 TCCTTCGTTGAAAAGACATGC 57.103 42.857 0.00 0.00 0.00 4.06
208 209 2.552315 TCCTTCGTTGAAAAGACATGCC 59.448 45.455 0.00 0.00 0.00 4.40
209 210 2.351738 CCTTCGTTGAAAAGACATGCCC 60.352 50.000 0.00 0.00 0.00 5.36
210 211 1.974265 TCGTTGAAAAGACATGCCCA 58.026 45.000 0.00 0.00 0.00 5.36
211 212 2.513753 TCGTTGAAAAGACATGCCCAT 58.486 42.857 0.00 0.00 0.00 4.00
212 213 2.228582 TCGTTGAAAAGACATGCCCATG 59.771 45.455 6.71 6.71 44.15 3.66
213 214 2.340337 GTTGAAAAGACATGCCCATGC 58.660 47.619 8.11 2.14 42.39 4.06
214 215 0.896923 TGAAAAGACATGCCCATGCC 59.103 50.000 8.11 0.00 42.39 4.40
215 216 1.188863 GAAAAGACATGCCCATGCCT 58.811 50.000 8.11 0.00 42.39 4.75
216 217 1.551883 GAAAAGACATGCCCATGCCTT 59.448 47.619 8.11 6.13 42.12 4.35
217 218 1.188863 AAAGACATGCCCATGCCTTC 58.811 50.000 9.70 0.89 39.97 3.46
218 219 0.040058 AAGACATGCCCATGCCTTCA 59.960 50.000 8.11 0.00 36.96 3.02
219 220 0.040058 AGACATGCCCATGCCTTCAA 59.960 50.000 8.11 0.00 42.39 2.69
220 221 0.458669 GACATGCCCATGCCTTCAAG 59.541 55.000 8.11 0.00 42.39 3.02
221 222 0.974010 ACATGCCCATGCCTTCAAGG 60.974 55.000 0.00 0.00 42.39 3.61
243 244 2.613691 CAAGATCTTGGCAATTGCACC 58.386 47.619 30.32 15.47 44.36 5.01
244 245 1.188863 AGATCTTGGCAATTGCACCC 58.811 50.000 30.32 14.75 44.36 4.61
245 246 0.896923 GATCTTGGCAATTGCACCCA 59.103 50.000 30.32 17.19 44.36 4.51
246 247 1.483415 GATCTTGGCAATTGCACCCAT 59.517 47.619 30.32 16.63 44.36 4.00
247 248 0.609151 TCTTGGCAATTGCACCCATG 59.391 50.000 30.32 19.86 44.36 3.66
248 249 0.609151 CTTGGCAATTGCACCCATGA 59.391 50.000 30.32 6.14 44.36 3.07
249 250 1.002201 CTTGGCAATTGCACCCATGAA 59.998 47.619 30.32 10.51 44.36 2.57
250 251 0.321021 TGGCAATTGCACCCATGAAC 59.679 50.000 30.32 11.20 44.36 3.18
251 252 0.321021 GGCAATTGCACCCATGAACA 59.679 50.000 30.32 0.00 44.36 3.18
252 253 1.431496 GCAATTGCACCCATGAACAC 58.569 50.000 25.36 0.00 41.59 3.32
253 254 1.001181 GCAATTGCACCCATGAACACT 59.999 47.619 25.36 0.00 41.59 3.55
254 255 2.927871 GCAATTGCACCCATGAACACTC 60.928 50.000 25.36 0.00 41.59 3.51
255 256 2.291209 ATTGCACCCATGAACACTCA 57.709 45.000 0.00 0.00 35.56 3.41
256 257 2.291209 TTGCACCCATGAACACTCAT 57.709 45.000 0.00 0.00 43.40 2.90
257 258 3.431673 TTGCACCCATGAACACTCATA 57.568 42.857 0.00 0.00 40.49 2.15
258 259 3.650281 TGCACCCATGAACACTCATAT 57.350 42.857 0.00 0.00 40.49 1.78
259 260 3.544684 TGCACCCATGAACACTCATATC 58.455 45.455 0.00 0.00 40.49 1.63
260 261 2.880890 GCACCCATGAACACTCATATCC 59.119 50.000 0.00 0.00 40.49 2.59
261 262 3.434167 GCACCCATGAACACTCATATCCT 60.434 47.826 0.00 0.00 40.49 3.24
262 263 4.785301 CACCCATGAACACTCATATCCTT 58.215 43.478 0.00 0.00 40.49 3.36
263 264 4.818546 CACCCATGAACACTCATATCCTTC 59.181 45.833 0.00 0.00 40.49 3.46
264 265 4.474651 ACCCATGAACACTCATATCCTTCA 59.525 41.667 0.00 0.00 40.49 3.02
265 266 5.133322 ACCCATGAACACTCATATCCTTCAT 59.867 40.000 0.00 0.00 40.49 2.57
266 267 6.066690 CCCATGAACACTCATATCCTTCATT 58.933 40.000 0.00 0.00 40.49 2.57
267 268 7.147320 ACCCATGAACACTCATATCCTTCATTA 60.147 37.037 0.00 0.00 40.49 1.90
268 269 7.720957 CCCATGAACACTCATATCCTTCATTAA 59.279 37.037 0.00 0.00 40.49 1.40
269 270 9.123902 CCATGAACACTCATATCCTTCATTAAA 57.876 33.333 0.00 0.00 40.49 1.52
295 296 1.839424 AAAACTCCATGGGCACTAGC 58.161 50.000 13.02 0.00 41.10 3.42
296 297 0.392998 AAACTCCATGGGCACTAGCG 60.393 55.000 13.02 0.00 43.41 4.26
305 306 4.530857 GCACTAGCGCCCACGGAT 62.531 66.667 2.29 0.00 40.57 4.18
306 307 2.186903 CACTAGCGCCCACGGATT 59.813 61.111 2.29 0.00 40.57 3.01
307 308 1.449601 CACTAGCGCCCACGGATTT 60.450 57.895 2.29 0.00 40.57 2.17
308 309 0.179094 CACTAGCGCCCACGGATTTA 60.179 55.000 2.29 0.00 40.57 1.40
309 310 0.756903 ACTAGCGCCCACGGATTTAT 59.243 50.000 2.29 0.00 40.57 1.40
310 311 1.140252 ACTAGCGCCCACGGATTTATT 59.860 47.619 2.29 0.00 40.57 1.40
311 312 1.531149 CTAGCGCCCACGGATTTATTG 59.469 52.381 2.29 0.00 40.57 1.90
312 313 0.107410 AGCGCCCACGGATTTATTGA 60.107 50.000 2.29 0.00 40.57 2.57
313 314 0.951558 GCGCCCACGGATTTATTGAT 59.048 50.000 0.00 0.00 40.57 2.57
314 315 2.147958 GCGCCCACGGATTTATTGATA 58.852 47.619 0.00 0.00 40.57 2.15
315 316 2.747446 GCGCCCACGGATTTATTGATAT 59.253 45.455 0.00 0.00 40.57 1.63
316 317 3.936453 GCGCCCACGGATTTATTGATATA 59.064 43.478 0.00 0.00 40.57 0.86
317 318 4.034048 GCGCCCACGGATTTATTGATATAG 59.966 45.833 0.00 0.00 40.57 1.31
318 319 5.416083 CGCCCACGGATTTATTGATATAGA 58.584 41.667 0.00 0.00 34.97 1.98
319 320 5.872617 CGCCCACGGATTTATTGATATAGAA 59.127 40.000 0.00 0.00 34.97 2.10
320 321 6.036083 CGCCCACGGATTTATTGATATAGAAG 59.964 42.308 0.00 0.00 34.97 2.85
321 322 7.103641 GCCCACGGATTTATTGATATAGAAGA 58.896 38.462 0.00 0.00 0.00 2.87
322 323 7.606456 GCCCACGGATTTATTGATATAGAAGAA 59.394 37.037 0.00 0.00 0.00 2.52
323 324 9.155975 CCCACGGATTTATTGATATAGAAGAAG 57.844 37.037 0.00 0.00 0.00 2.85
324 325 8.660373 CCACGGATTTATTGATATAGAAGAAGC 58.340 37.037 0.00 0.00 0.00 3.86
325 326 9.208022 CACGGATTTATTGATATAGAAGAAGCA 57.792 33.333 0.00 0.00 0.00 3.91
326 327 9.950496 ACGGATTTATTGATATAGAAGAAGCAT 57.050 29.630 0.00 0.00 0.00 3.79
331 332 9.950496 TTTATTGATATAGAAGAAGCATCCCTC 57.050 33.333 0.00 0.00 0.00 4.30
332 333 7.565190 ATTGATATAGAAGAAGCATCCCTCA 57.435 36.000 0.00 0.00 0.00 3.86
333 334 7.565190 TTGATATAGAAGAAGCATCCCTCAT 57.435 36.000 0.00 0.00 0.00 2.90
334 335 6.944096 TGATATAGAAGAAGCATCCCTCATG 58.056 40.000 0.00 0.00 35.29 3.07
335 336 6.727697 TGATATAGAAGAAGCATCCCTCATGA 59.272 38.462 0.00 0.00 33.80 3.07
336 337 3.842007 AGAAGAAGCATCCCTCATGAG 57.158 47.619 16.24 16.24 33.80 2.90
337 338 3.382278 AGAAGAAGCATCCCTCATGAGA 58.618 45.455 24.62 5.64 33.80 3.27
338 339 3.779183 AGAAGAAGCATCCCTCATGAGAA 59.221 43.478 24.62 11.97 33.80 2.87
339 340 4.412858 AGAAGAAGCATCCCTCATGAGAAT 59.587 41.667 24.62 13.73 33.80 2.40
340 341 4.792513 AGAAGCATCCCTCATGAGAATT 57.207 40.909 24.62 8.69 33.80 2.17
341 342 4.716794 AGAAGCATCCCTCATGAGAATTC 58.283 43.478 24.62 15.91 33.80 2.17
342 343 3.505480 AGCATCCCTCATGAGAATTCC 57.495 47.619 24.62 9.10 33.80 3.01
343 344 2.781757 AGCATCCCTCATGAGAATTCCA 59.218 45.455 24.62 0.28 33.80 3.53
344 345 3.147629 GCATCCCTCATGAGAATTCCAG 58.852 50.000 24.62 5.13 33.80 3.86
345 346 3.181447 GCATCCCTCATGAGAATTCCAGA 60.181 47.826 24.62 8.82 33.80 3.86
346 347 4.688045 GCATCCCTCATGAGAATTCCAGAA 60.688 45.833 24.62 0.00 33.80 3.02
347 348 5.443283 CATCCCTCATGAGAATTCCAGAAA 58.557 41.667 24.62 0.00 33.80 2.52
348 349 5.722172 TCCCTCATGAGAATTCCAGAAAT 57.278 39.130 24.62 0.00 0.00 2.17
349 350 6.083487 TCCCTCATGAGAATTCCAGAAATT 57.917 37.500 24.62 0.00 40.34 1.82
357 358 2.038387 ATTCCAGAAATTCGTCCCCG 57.962 50.000 0.00 0.00 0.00 5.73
358 359 0.978151 TTCCAGAAATTCGTCCCCGA 59.022 50.000 0.00 0.00 42.41 5.14
359 360 0.248289 TCCAGAAATTCGTCCCCGAC 59.752 55.000 0.00 0.00 44.13 4.79
368 369 2.879907 GTCCCCGACGTGAATCGA 59.120 61.111 0.00 0.00 45.13 3.59
369 370 1.213537 GTCCCCGACGTGAATCGAA 59.786 57.895 0.00 0.00 45.13 3.71
370 371 1.074872 GTCCCCGACGTGAATCGAAC 61.075 60.000 0.00 0.00 45.13 3.95
371 372 1.214589 CCCCGACGTGAATCGAACT 59.785 57.895 0.00 0.00 45.13 3.01
372 373 0.801067 CCCCGACGTGAATCGAACTC 60.801 60.000 0.00 0.00 45.13 3.01
373 374 0.170561 CCCGACGTGAATCGAACTCT 59.829 55.000 0.00 0.00 45.13 3.24
374 375 1.260206 CCGACGTGAATCGAACTCTG 58.740 55.000 0.00 0.00 45.13 3.35
375 376 1.260206 CGACGTGAATCGAACTCTGG 58.740 55.000 0.00 0.00 45.13 3.86
376 377 1.401148 CGACGTGAATCGAACTCTGGT 60.401 52.381 0.00 0.00 45.13 4.00
377 378 2.251893 GACGTGAATCGAACTCTGGTC 58.748 52.381 0.00 0.00 42.86 4.02
378 379 1.260206 CGTGAATCGAACTCTGGTCG 58.740 55.000 0.00 0.00 42.86 4.79
379 380 1.401148 CGTGAATCGAACTCTGGTCGT 60.401 52.381 4.93 0.00 42.86 4.34
380 381 2.673833 GTGAATCGAACTCTGGTCGTT 58.326 47.619 4.93 0.00 0.00 3.85
381 382 3.668757 CGTGAATCGAACTCTGGTCGTTA 60.669 47.826 4.93 0.00 42.86 3.18
382 383 3.852536 GTGAATCGAACTCTGGTCGTTAG 59.147 47.826 4.93 0.00 0.00 2.34
383 384 3.119602 TGAATCGAACTCTGGTCGTTAGG 60.120 47.826 4.93 0.00 0.00 2.69
384 385 1.901591 TCGAACTCTGGTCGTTAGGT 58.098 50.000 4.93 0.00 0.00 3.08
385 386 2.233271 TCGAACTCTGGTCGTTAGGTT 58.767 47.619 4.93 0.00 0.00 3.50
386 387 2.624838 TCGAACTCTGGTCGTTAGGTTT 59.375 45.455 4.93 0.00 0.00 3.27
387 388 3.820467 TCGAACTCTGGTCGTTAGGTTTA 59.180 43.478 4.93 0.00 0.00 2.01
388 389 3.916776 CGAACTCTGGTCGTTAGGTTTAC 59.083 47.826 0.00 0.00 0.00 2.01
389 390 4.557296 CGAACTCTGGTCGTTAGGTTTACA 60.557 45.833 0.00 0.00 0.00 2.41
390 391 4.942761 ACTCTGGTCGTTAGGTTTACAA 57.057 40.909 0.00 0.00 0.00 2.41
391 392 5.479124 ACTCTGGTCGTTAGGTTTACAAT 57.521 39.130 0.00 0.00 0.00 2.71
392 393 5.476614 ACTCTGGTCGTTAGGTTTACAATC 58.523 41.667 0.00 0.00 0.00 2.67
393 394 5.011329 ACTCTGGTCGTTAGGTTTACAATCA 59.989 40.000 0.00 0.00 0.00 2.57
394 395 6.045072 TCTGGTCGTTAGGTTTACAATCAT 57.955 37.500 0.00 0.00 0.00 2.45
395 396 5.872617 TCTGGTCGTTAGGTTTACAATCATG 59.127 40.000 0.00 0.00 0.00 3.07
396 397 4.393680 TGGTCGTTAGGTTTACAATCATGC 59.606 41.667 0.00 0.00 0.00 4.06
397 398 4.493545 GGTCGTTAGGTTTACAATCATGCG 60.494 45.833 0.00 0.00 0.00 4.73
398 399 3.062909 TCGTTAGGTTTACAATCATGCGC 59.937 43.478 0.00 0.00 0.00 6.09
399 400 3.691498 GTTAGGTTTACAATCATGCGCC 58.309 45.455 4.18 0.00 0.00 6.53
400 401 1.102978 AGGTTTACAATCATGCGCCC 58.897 50.000 4.18 0.00 0.00 6.13
401 402 0.102300 GGTTTACAATCATGCGCCCC 59.898 55.000 4.18 0.00 0.00 5.80
402 403 0.102300 GTTTACAATCATGCGCCCCC 59.898 55.000 4.18 0.00 0.00 5.40
403 404 0.323816 TTTACAATCATGCGCCCCCA 60.324 50.000 4.18 0.00 0.00 4.96
404 405 0.323816 TTACAATCATGCGCCCCCAA 60.324 50.000 4.18 0.00 0.00 4.12
405 406 1.034838 TACAATCATGCGCCCCCAAC 61.035 55.000 4.18 0.00 0.00 3.77
406 407 2.759560 AATCATGCGCCCCCAACC 60.760 61.111 4.18 0.00 0.00 3.77
407 408 3.598747 AATCATGCGCCCCCAACCA 62.599 57.895 4.18 0.00 0.00 3.67
418 419 3.924507 CCAACCACTGGGCTATGC 58.075 61.111 0.00 0.00 42.17 3.14
428 429 2.109181 GGCTATGCCCACGTCCTC 59.891 66.667 0.00 0.00 44.06 3.71
429 430 2.731571 GGCTATGCCCACGTCCTCA 61.732 63.158 0.00 0.00 44.06 3.86
430 431 1.521681 GCTATGCCCACGTCCTCAC 60.522 63.158 0.00 0.00 0.00 3.51
458 459 4.410099 TCCTTCATTGAAAAGACATGCCT 58.590 39.130 0.01 0.00 0.00 4.75
487 488 5.682943 TTTGGTGAAAAGATGTACCTTCG 57.317 39.130 0.00 0.00 34.32 3.79
491 492 4.935808 GGTGAAAAGATGTACCTTCGTGAT 59.064 41.667 0.00 0.00 0.00 3.06
501 502 4.868171 TGTACCTTCGTGATAAGACATTGC 59.132 41.667 0.00 0.00 0.00 3.56
589 590 6.010294 ACATTGCAGAAAAGATGTCTCTTG 57.990 37.500 0.00 0.00 40.93 3.02
763 764 7.894364 TGAGTTAGAAAACTATGTACTCCCTCT 59.106 37.037 0.00 0.00 46.09 3.69
882 883 1.856539 TTCCGGACGGAGGGAGTACT 61.857 60.000 13.64 0.00 46.06 2.73
938 2527 6.469410 TGACGATATTTAAACTCAACCCTGT 58.531 36.000 0.00 0.00 0.00 4.00
1031 2772 8.794335 AAGTGTGGGCTTTAAAAATAACAAAA 57.206 26.923 0.00 0.00 0.00 2.44
1032 2773 8.203937 AGTGTGGGCTTTAAAAATAACAAAAC 57.796 30.769 0.00 0.00 0.00 2.43
1039 2780 7.642194 GGCTTTAAAAATAACAAAACAGTTGCC 59.358 33.333 0.00 0.00 33.07 4.52
1077 2818 3.595190 AGGGTTAGGTTTCTTGTGCTT 57.405 42.857 0.00 0.00 0.00 3.91
1078 2819 3.222603 AGGGTTAGGTTTCTTGTGCTTG 58.777 45.455 0.00 0.00 0.00 4.01
1086 2827 1.032014 TTCTTGTGCTTGAACCAGCC 58.968 50.000 0.00 0.00 39.25 4.85
1091 2832 2.203480 GCTTGAACCAGCCCACCA 60.203 61.111 0.00 0.00 33.21 4.17
1102 2843 2.489073 CCAGCCCACCAGAGTTTAAGTT 60.489 50.000 0.00 0.00 0.00 2.66
1118 2859 8.281212 AGTTTAAGTTCTATACTTGGCATTGG 57.719 34.615 0.00 0.00 46.46 3.16
1124 2865 4.188462 TCTATACTTGGCATTGGTGTTCG 58.812 43.478 0.00 0.00 0.00 3.95
1167 2908 4.386049 CAGACTTTCTAGCGATGTTCGTTT 59.614 41.667 0.00 0.00 42.81 3.60
1202 2951 3.432252 CGTTCCAGTTATGTGGTGACTTC 59.568 47.826 0.00 0.00 38.88 3.01
1223 2972 7.023575 ACTTCGTCAATTTCAAGATATTGTGC 58.976 34.615 11.28 6.74 33.43 4.57
1226 2975 6.371271 TCGTCAATTTCAAGATATTGTGCTGA 59.629 34.615 11.28 0.00 33.43 4.26
1252 3001 5.356190 ACGGTGTTTCGAAGATACTCATAGA 59.644 40.000 0.00 0.00 39.22 1.98
1254 3003 6.238402 CGGTGTTTCGAAGATACTCATAGAGA 60.238 42.308 0.00 0.00 39.22 3.10
1272 3021 4.287552 AGAGAAAGGATATACGTGTGGGT 58.712 43.478 0.00 0.00 0.00 4.51
1279 3028 5.391256 AGGATATACGTGTGGGTTCATAGA 58.609 41.667 0.00 0.00 0.00 1.98
1280 3029 5.477291 AGGATATACGTGTGGGTTCATAGAG 59.523 44.000 0.00 0.00 0.00 2.43
1287 3036 4.504858 GTGTGGGTTCATAGAGGTAAGTG 58.495 47.826 0.00 0.00 0.00 3.16
1338 3088 0.324091 AACATACTCCCTCCGTCCGT 60.324 55.000 0.00 0.00 0.00 4.69
1350 3100 3.103738 CTCCGTCCGTAAATACTTGTCG 58.896 50.000 0.00 0.00 0.00 4.35
1352 3102 3.687212 TCCGTCCGTAAATACTTGTCGTA 59.313 43.478 0.00 0.00 0.00 3.43
1353 3103 4.031028 CCGTCCGTAAATACTTGTCGTAG 58.969 47.826 0.00 0.00 0.00 3.51
1358 3108 7.008628 CGTCCGTAAATACTTGTCGTAGAAATT 59.991 37.037 0.00 0.00 39.69 1.82
1444 3204 2.301346 TCGGACGGAGGGAGTAATAAC 58.699 52.381 0.00 0.00 0.00 1.89
1450 3210 5.884232 GGACGGAGGGAGTAATAACAAAAAT 59.116 40.000 0.00 0.00 0.00 1.82
1451 3211 6.037940 GGACGGAGGGAGTAATAACAAAAATC 59.962 42.308 0.00 0.00 0.00 2.17
1655 3420 5.464965 AACGGCATTACGAATTCAAGTAG 57.535 39.130 6.22 0.00 37.61 2.57
1675 3440 5.657302 AGTAGTACTTCTGGATCGAAATGGT 59.343 40.000 0.00 0.00 0.00 3.55
1690 3455 3.594603 AATGGTCGGTTGACTGTAGAG 57.405 47.619 0.00 0.00 44.83 2.43
1759 3533 1.697432 AGGAACGACCAATTCCACTCA 59.303 47.619 6.55 0.00 46.98 3.41
1760 3534 2.305927 AGGAACGACCAATTCCACTCAT 59.694 45.455 6.55 0.00 46.98 2.90
1764 3538 2.303022 ACGACCAATTCCACTCATCAGT 59.697 45.455 0.00 0.00 0.00 3.41
1767 3541 2.303022 ACCAATTCCACTCATCAGTCGT 59.697 45.455 0.00 0.00 0.00 4.34
1827 3613 4.156922 CGTACTCTTCTCTTCTGTGTCCAT 59.843 45.833 0.00 0.00 0.00 3.41
1844 3630 7.056635 TGTGTCCATCTTTTCTTCTTCTTCTT 58.943 34.615 0.00 0.00 0.00 2.52
1845 3631 7.227512 TGTGTCCATCTTTTCTTCTTCTTCTTC 59.772 37.037 0.00 0.00 0.00 2.87
1846 3632 7.443879 GTGTCCATCTTTTCTTCTTCTTCTTCT 59.556 37.037 0.00 0.00 0.00 2.85
1887 3673 2.166829 TGGCGTTTGCATGGATAAGTT 58.833 42.857 0.00 0.00 45.35 2.66
2114 3912 1.599518 CCACCACCGCTGCTAACAA 60.600 57.895 0.00 0.00 0.00 2.83
2700 4501 4.618912 CACCACGATCACGATCATTATCTC 59.381 45.833 7.75 0.00 42.66 2.75
2709 4510 0.598562 ATCATTATCTCGTCGGCGCT 59.401 50.000 3.52 0.00 38.14 5.92
2748 4555 0.038526 AGAAACACCAGCCGTACGAG 60.039 55.000 18.76 8.15 0.00 4.18
2790 4597 3.735029 GCCGTCGACGAGACCAGT 61.735 66.667 37.65 0.00 46.92 4.00
2803 4610 2.436646 CCAGTAGCCACGCTTGGG 60.437 66.667 11.75 0.00 44.15 4.12
2841 4648 0.972983 AGCAGCAGTACGGAGATGGT 60.973 55.000 0.00 0.00 0.00 3.55
2868 4675 2.125106 GAATCTCCGGTGGCGCTT 60.125 61.111 7.64 0.00 0.00 4.68
2932 4742 1.345089 AGCCAGAGATAGCAGCATCAG 59.655 52.381 0.00 0.00 0.00 2.90
2954 4764 2.100631 CAGTCGCCGTCATGGAACC 61.101 63.158 0.00 0.00 42.00 3.62
3075 4885 1.673337 GCACATGGCAGCAGAGTCA 60.673 57.895 0.00 0.00 43.97 3.41
3145 4955 6.458630 TGGTAGATTTCATCCATCCATGAT 57.541 37.500 0.00 0.00 32.69 2.45
3146 4956 6.479006 TGGTAGATTTCATCCATCCATGATC 58.521 40.000 0.00 0.00 32.69 2.92
3147 4957 6.044637 TGGTAGATTTCATCCATCCATGATCA 59.955 38.462 0.00 0.00 32.69 2.92
3148 4958 7.117397 GGTAGATTTCATCCATCCATGATCAT 58.883 38.462 1.18 1.18 32.69 2.45
3149 4959 7.067129 GGTAGATTTCATCCATCCATGATCATG 59.933 40.741 25.97 25.97 38.51 3.07
3238 5051 4.218417 CACTCCATTTCAACAGGGTTAAGG 59.782 45.833 0.00 0.00 0.00 2.69
3265 5078 4.455190 GCTTCTTCTCTGTTGCATTTCTCT 59.545 41.667 0.00 0.00 0.00 3.10
3266 5079 5.390779 GCTTCTTCTCTGTTGCATTTCTCTC 60.391 44.000 0.00 0.00 0.00 3.20
3271 5084 6.492007 TCTCTGTTGCATTTCTCTCAATTC 57.508 37.500 0.00 0.00 0.00 2.17
3522 5500 6.127479 TGAGATGGGGTAATATTTTGCAACAC 60.127 38.462 0.00 0.00 0.00 3.32
3569 5601 2.476821 TCGTAGATGAGCATGCATGTG 58.523 47.619 26.79 5.68 0.00 3.21
3570 5602 1.070108 CGTAGATGAGCATGCATGTGC 60.070 52.381 26.79 16.21 45.38 4.57
3583 5615 7.317842 GCATGCATGTGCTATTCTATCTAAT 57.682 36.000 26.79 0.00 41.82 1.73
3605 5637 4.725556 TGACACACTTTCGAATACTTGC 57.274 40.909 0.00 0.00 0.00 4.01
3612 5644 6.955963 CACACTTTCGAATACTTGCAATCTAC 59.044 38.462 0.00 0.00 0.00 2.59
3613 5645 6.874134 ACACTTTCGAATACTTGCAATCTACT 59.126 34.615 0.00 0.00 0.00 2.57
3614 5646 7.063544 ACACTTTCGAATACTTGCAATCTACTC 59.936 37.037 0.00 0.00 0.00 2.59
3615 5647 6.535508 ACTTTCGAATACTTGCAATCTACTCC 59.464 38.462 0.00 0.00 0.00 3.85
3616 5648 4.945246 TCGAATACTTGCAATCTACTCCC 58.055 43.478 0.00 0.00 0.00 4.30
3617 5649 4.649674 TCGAATACTTGCAATCTACTCCCT 59.350 41.667 0.00 0.00 0.00 4.20
3618 5650 5.128827 TCGAATACTTGCAATCTACTCCCTT 59.871 40.000 0.00 0.00 0.00 3.95
3619 5651 5.235186 CGAATACTTGCAATCTACTCCCTTG 59.765 44.000 0.00 0.00 0.00 3.61
3620 5652 5.957771 ATACTTGCAATCTACTCCCTTGA 57.042 39.130 0.00 0.00 0.00 3.02
3621 5653 4.640771 ACTTGCAATCTACTCCCTTGAA 57.359 40.909 0.00 0.00 0.00 2.69
3622 5654 4.327680 ACTTGCAATCTACTCCCTTGAAC 58.672 43.478 0.00 0.00 0.00 3.18
3623 5655 3.350219 TGCAATCTACTCCCTTGAACC 57.650 47.619 0.00 0.00 0.00 3.62
3624 5656 2.280628 GCAATCTACTCCCTTGAACCG 58.719 52.381 0.00 0.00 0.00 4.44
3625 5657 2.280628 CAATCTACTCCCTTGAACCGC 58.719 52.381 0.00 0.00 0.00 5.68
3626 5658 1.568504 ATCTACTCCCTTGAACCGCA 58.431 50.000 0.00 0.00 0.00 5.69
3627 5659 1.344065 TCTACTCCCTTGAACCGCAA 58.656 50.000 0.00 0.00 34.73 4.85
3628 5660 1.695242 TCTACTCCCTTGAACCGCAAA 59.305 47.619 0.00 0.00 35.74 3.68
3629 5661 2.105134 TCTACTCCCTTGAACCGCAAAA 59.895 45.455 0.00 0.00 35.74 2.44
3630 5662 1.770294 ACTCCCTTGAACCGCAAAAA 58.230 45.000 0.00 0.00 35.74 1.94
3631 5663 1.407618 ACTCCCTTGAACCGCAAAAAC 59.592 47.619 0.00 0.00 35.74 2.43
3632 5664 1.407258 CTCCCTTGAACCGCAAAAACA 59.593 47.619 0.00 0.00 35.74 2.83
3633 5665 2.035632 TCCCTTGAACCGCAAAAACAT 58.964 42.857 0.00 0.00 35.74 2.71
3634 5666 2.035321 TCCCTTGAACCGCAAAAACATC 59.965 45.455 0.00 0.00 35.74 3.06
3635 5667 2.035832 CCCTTGAACCGCAAAAACATCT 59.964 45.455 0.00 0.00 35.74 2.90
3636 5668 3.492482 CCCTTGAACCGCAAAAACATCTT 60.492 43.478 0.00 0.00 35.74 2.40
3637 5669 4.261825 CCCTTGAACCGCAAAAACATCTTA 60.262 41.667 0.00 0.00 35.74 2.10
3638 5670 5.469479 CCTTGAACCGCAAAAACATCTTAT 58.531 37.500 0.00 0.00 35.74 1.73
3639 5671 6.349777 CCCTTGAACCGCAAAAACATCTTATA 60.350 38.462 0.00 0.00 35.74 0.98
3640 5672 7.257722 CCTTGAACCGCAAAAACATCTTATAT 58.742 34.615 0.00 0.00 35.74 0.86
3641 5673 7.759433 CCTTGAACCGCAAAAACATCTTATATT 59.241 33.333 0.00 0.00 35.74 1.28
3642 5674 9.139174 CTTGAACCGCAAAAACATCTTATATTT 57.861 29.630 0.00 0.00 35.74 1.40
3644 5676 9.781834 TGAACCGCAAAAACATCTTATATTTAG 57.218 29.630 0.00 0.00 0.00 1.85
3645 5677 9.233232 GAACCGCAAAAACATCTTATATTTAGG 57.767 33.333 0.00 0.00 0.00 2.69
3646 5678 8.288689 ACCGCAAAAACATCTTATATTTAGGT 57.711 30.769 0.00 0.00 0.00 3.08
3647 5679 9.398538 ACCGCAAAAACATCTTATATTTAGGTA 57.601 29.630 0.00 0.00 0.00 3.08
3648 5680 9.659830 CCGCAAAAACATCTTATATTTAGGTAC 57.340 33.333 0.00 0.00 0.00 3.34
3649 5681 9.365311 CGCAAAAACATCTTATATTTAGGTACG 57.635 33.333 0.00 0.00 0.00 3.67
3650 5682 9.659830 GCAAAAACATCTTATATTTAGGTACGG 57.340 33.333 0.00 0.00 0.00 4.02
3653 5685 9.774413 AAAACATCTTATATTTAGGTACGGAGG 57.226 33.333 0.00 0.00 0.00 4.30
3654 5686 7.477945 ACATCTTATATTTAGGTACGGAGGG 57.522 40.000 0.00 0.00 0.00 4.30
3655 5687 7.243824 ACATCTTATATTTAGGTACGGAGGGA 58.756 38.462 0.00 0.00 0.00 4.20
3690 5722 3.733443 ATTTTCATGCCGGCCTTAATC 57.267 42.857 26.77 0.00 0.00 1.75
3731 5763 6.981722 ACTAAGTTGCCTGAATTTCGAATTT 58.018 32.000 0.00 1.00 0.00 1.82
3736 5768 3.323403 TGCCTGAATTTCGAATTTGGGTT 59.677 39.130 9.85 0.00 0.00 4.11
3743 5775 5.796350 ATTTCGAATTTGGGTTAGTCGAG 57.204 39.130 0.00 0.00 41.30 4.04
3750 5782 0.250858 TGGGTTAGTCGAGTCGGTGA 60.251 55.000 13.54 0.00 0.00 4.02
3822 5855 4.129737 TGCTGAGGCGAGCGGTAC 62.130 66.667 7.00 0.00 42.32 3.34
3899 5933 0.658829 CGATAGAGGCGAGCGTGAAG 60.659 60.000 0.00 0.00 39.76 3.02
3928 5962 3.511610 AAGGCTGGGGGTGCAAGT 61.512 61.111 0.00 0.00 0.00 3.16
3942 5976 2.289547 GTGCAAGTTCGCCAGTTTAGAA 59.710 45.455 0.00 0.00 0.00 2.10
3943 5977 2.946329 TGCAAGTTCGCCAGTTTAGAAA 59.054 40.909 0.00 0.00 0.00 2.52
3954 5988 2.678336 CAGTTTAGAAAGGGATGGACGC 59.322 50.000 0.00 0.00 0.00 5.19
3961 5995 3.861797 GGGATGGACGCGGGTGAT 61.862 66.667 10.96 1.04 0.00 3.06
3973 6007 4.722700 GGTGATGCCAGCACGGGT 62.723 66.667 7.04 0.00 40.34 5.28
3974 6008 3.434319 GTGATGCCAGCACGGGTG 61.434 66.667 0.00 0.00 34.06 4.61
3990 6024 4.228567 TGTGTGCGGCGGTGAAGA 62.229 61.111 9.78 0.00 0.00 2.87
3997 6031 2.815647 GGCGGTGAAGAGAAGGCG 60.816 66.667 0.00 0.00 0.00 5.52
4023 6057 2.610859 AGGATGGTGGGGAAGCGT 60.611 61.111 0.00 0.00 0.00 5.07
4067 6101 3.411351 CGGTTCGGCCAGTGTTCG 61.411 66.667 2.24 0.00 36.97 3.95
4132 6167 5.595952 GGTTGAAGAAGGCCATCTATTGAAT 59.404 40.000 11.64 0.00 0.00 2.57
4137 6172 5.136105 AGAAGGCCATCTATTGAATGGTTC 58.864 41.667 9.20 0.00 37.75 3.62
4153 6188 4.300189 TGGTTCAAAACAAATCGACTGG 57.700 40.909 0.00 0.00 0.00 4.00
4163 6199 6.496338 AACAAATCGACTGGTCTAATTTCC 57.504 37.500 0.00 0.00 0.00 3.13
4167 6203 7.230712 ACAAATCGACTGGTCTAATTTCCTTTT 59.769 33.333 0.00 0.00 0.00 2.27
4173 6209 6.171213 ACTGGTCTAATTTCCTTTTAGTCGG 58.829 40.000 0.00 0.00 0.00 4.79
4174 6210 6.117975 TGGTCTAATTTCCTTTTAGTCGGT 57.882 37.500 0.00 0.00 0.00 4.69
4195 6231 1.281867 TGACCCCTAGCCAGTCATTTG 59.718 52.381 4.21 0.00 35.67 2.32
4209 6245 6.263344 CCAGTCATTTGTCATAGCTTCATTG 58.737 40.000 0.00 0.00 0.00 2.82
4212 6248 6.435277 AGTCATTTGTCATAGCTTCATTGGTT 59.565 34.615 0.00 0.00 0.00 3.67
4244 6281 6.525578 TTGTTAACCAGACGAGATGATACT 57.474 37.500 2.48 0.00 0.00 2.12
4266 6303 5.408604 ACTGTGGCACTCTTTAAGTTTATCG 59.591 40.000 19.83 0.00 35.45 2.92
4267 6304 4.153475 TGTGGCACTCTTTAAGTTTATCGC 59.847 41.667 19.83 0.00 35.45 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 7.608376 AGCCAGTTTTAGAGAATAAAGAGGAAC 59.392 37.037 0.00 0.00 0.00 3.62
46 47 7.690256 AGCCAGTTTTAGAGAATAAAGAGGAA 58.310 34.615 0.00 0.00 0.00 3.36
47 48 7.259088 AGCCAGTTTTAGAGAATAAAGAGGA 57.741 36.000 0.00 0.00 0.00 3.71
48 49 6.540551 GGAGCCAGTTTTAGAGAATAAAGAGG 59.459 42.308 0.00 0.00 0.00 3.69
49 50 7.334858 AGGAGCCAGTTTTAGAGAATAAAGAG 58.665 38.462 0.00 0.00 0.00 2.85
50 51 7.259088 AGGAGCCAGTTTTAGAGAATAAAGA 57.741 36.000 0.00 0.00 0.00 2.52
51 52 9.103861 CTTAGGAGCCAGTTTTAGAGAATAAAG 57.896 37.037 0.00 0.00 0.00 1.85
52 53 8.603304 ACTTAGGAGCCAGTTTTAGAGAATAAA 58.397 33.333 0.00 0.00 0.00 1.40
53 54 8.147244 ACTTAGGAGCCAGTTTTAGAGAATAA 57.853 34.615 0.00 0.00 0.00 1.40
54 55 7.147707 GGACTTAGGAGCCAGTTTTAGAGAATA 60.148 40.741 0.00 0.00 0.00 1.75
55 56 6.352308 GGACTTAGGAGCCAGTTTTAGAGAAT 60.352 42.308 0.00 0.00 0.00 2.40
56 57 5.046520 GGACTTAGGAGCCAGTTTTAGAGAA 60.047 44.000 0.00 0.00 0.00 2.87
57 58 4.466726 GGACTTAGGAGCCAGTTTTAGAGA 59.533 45.833 0.00 0.00 0.00 3.10
58 59 4.468153 AGGACTTAGGAGCCAGTTTTAGAG 59.532 45.833 0.00 0.00 0.00 2.43
59 60 4.426704 AGGACTTAGGAGCCAGTTTTAGA 58.573 43.478 0.00 0.00 0.00 2.10
60 61 4.828072 AGGACTTAGGAGCCAGTTTTAG 57.172 45.455 0.00 0.00 0.00 1.85
61 62 6.650120 CATTAGGACTTAGGAGCCAGTTTTA 58.350 40.000 0.00 0.00 0.00 1.52
62 63 5.501156 CATTAGGACTTAGGAGCCAGTTTT 58.499 41.667 0.00 0.00 0.00 2.43
63 64 4.626529 GCATTAGGACTTAGGAGCCAGTTT 60.627 45.833 0.00 0.00 0.00 2.66
64 65 3.118223 GCATTAGGACTTAGGAGCCAGTT 60.118 47.826 0.00 0.00 0.00 3.16
65 66 2.436173 GCATTAGGACTTAGGAGCCAGT 59.564 50.000 0.00 0.00 0.00 4.00
66 67 2.435805 TGCATTAGGACTTAGGAGCCAG 59.564 50.000 0.00 0.00 0.00 4.85
67 68 2.477245 TGCATTAGGACTTAGGAGCCA 58.523 47.619 0.00 0.00 0.00 4.75
68 69 3.206964 GTTGCATTAGGACTTAGGAGCC 58.793 50.000 0.00 0.00 0.00 4.70
69 70 3.873910 TGTTGCATTAGGACTTAGGAGC 58.126 45.455 0.00 0.00 0.00 4.70
70 71 5.674525 TGATGTTGCATTAGGACTTAGGAG 58.325 41.667 0.00 0.00 0.00 3.69
71 72 5.692115 TGATGTTGCATTAGGACTTAGGA 57.308 39.130 0.00 0.00 0.00 2.94
72 73 5.824624 ACATGATGTTGCATTAGGACTTAGG 59.175 40.000 0.00 0.00 0.00 2.69
73 74 6.932356 ACATGATGTTGCATTAGGACTTAG 57.068 37.500 0.00 0.00 0.00 2.18
74 75 8.800370 TTAACATGATGTTGCATTAGGACTTA 57.200 30.769 20.29 0.00 41.30 2.24
75 76 7.629222 GCTTAACATGATGTTGCATTAGGACTT 60.629 37.037 20.29 0.00 41.30 3.01
76 77 6.183360 GCTTAACATGATGTTGCATTAGGACT 60.183 38.462 20.29 0.00 41.30 3.85
77 78 5.973565 GCTTAACATGATGTTGCATTAGGAC 59.026 40.000 20.29 0.00 41.30 3.85
78 79 5.067674 GGCTTAACATGATGTTGCATTAGGA 59.932 40.000 20.29 0.00 41.30 2.94
79 80 5.163530 TGGCTTAACATGATGTTGCATTAGG 60.164 40.000 20.29 2.22 41.30 2.69
80 81 5.745294 GTGGCTTAACATGATGTTGCATTAG 59.255 40.000 20.29 10.34 41.30 1.73
81 82 5.184671 TGTGGCTTAACATGATGTTGCATTA 59.815 36.000 20.29 4.65 41.30 1.90
82 83 4.021280 TGTGGCTTAACATGATGTTGCATT 60.021 37.500 20.29 0.00 41.30 3.56
83 84 3.510753 TGTGGCTTAACATGATGTTGCAT 59.489 39.130 20.29 0.00 41.30 3.96
84 85 2.889678 TGTGGCTTAACATGATGTTGCA 59.110 40.909 20.29 6.47 41.30 4.08
85 86 3.574284 TGTGGCTTAACATGATGTTGC 57.426 42.857 20.29 15.26 41.30 4.17
86 87 4.142622 ACGATGTGGCTTAACATGATGTTG 60.143 41.667 20.29 6.20 41.30 3.33
87 88 4.009675 ACGATGTGGCTTAACATGATGTT 58.990 39.130 15.80 15.80 43.88 2.71
88 89 3.609853 ACGATGTGGCTTAACATGATGT 58.390 40.909 0.00 0.00 40.87 3.06
89 90 4.333649 AGAACGATGTGGCTTAACATGATG 59.666 41.667 0.00 0.00 40.87 3.07
90 91 4.517285 AGAACGATGTGGCTTAACATGAT 58.483 39.130 0.00 0.00 40.87 2.45
91 92 3.937814 AGAACGATGTGGCTTAACATGA 58.062 40.909 0.00 0.00 40.87 3.07
92 93 4.629634 TGTAGAACGATGTGGCTTAACATG 59.370 41.667 5.19 0.00 40.87 3.21
93 94 4.827692 TGTAGAACGATGTGGCTTAACAT 58.172 39.130 0.00 0.74 43.47 2.71
94 95 4.260139 TGTAGAACGATGTGGCTTAACA 57.740 40.909 0.00 0.00 0.00 2.41
95 96 4.927425 TCTTGTAGAACGATGTGGCTTAAC 59.073 41.667 0.00 0.00 0.00 2.01
96 97 5.142061 TCTTGTAGAACGATGTGGCTTAA 57.858 39.130 0.00 0.00 0.00 1.85
97 98 4.794278 TCTTGTAGAACGATGTGGCTTA 57.206 40.909 0.00 0.00 0.00 3.09
98 99 3.678056 TCTTGTAGAACGATGTGGCTT 57.322 42.857 0.00 0.00 0.00 4.35
99 100 3.006967 ACTTCTTGTAGAACGATGTGGCT 59.993 43.478 0.00 0.00 29.89 4.75
100 101 3.326747 ACTTCTTGTAGAACGATGTGGC 58.673 45.455 0.00 0.00 29.89 5.01
101 102 4.750098 ACAACTTCTTGTAGAACGATGTGG 59.250 41.667 0.00 0.00 38.95 4.17
102 103 5.907197 ACAACTTCTTGTAGAACGATGTG 57.093 39.130 0.00 0.00 38.95 3.21
125 126 8.887717 GCCTTGATCGATGCTTAATATAATTCT 58.112 33.333 0.54 0.00 0.00 2.40
126 127 8.125448 GGCCTTGATCGATGCTTAATATAATTC 58.875 37.037 0.54 0.00 0.00 2.17
127 128 7.611467 TGGCCTTGATCGATGCTTAATATAATT 59.389 33.333 0.54 0.00 0.00 1.40
128 129 7.112122 TGGCCTTGATCGATGCTTAATATAAT 58.888 34.615 0.54 0.00 0.00 1.28
129 130 6.472016 TGGCCTTGATCGATGCTTAATATAA 58.528 36.000 0.54 0.00 0.00 0.98
130 131 6.048732 TGGCCTTGATCGATGCTTAATATA 57.951 37.500 0.54 0.00 0.00 0.86
131 132 4.910195 TGGCCTTGATCGATGCTTAATAT 58.090 39.130 0.54 0.00 0.00 1.28
132 133 4.350368 TGGCCTTGATCGATGCTTAATA 57.650 40.909 0.54 0.00 0.00 0.98
133 134 3.213206 TGGCCTTGATCGATGCTTAAT 57.787 42.857 0.54 0.00 0.00 1.40
134 135 2.708216 TGGCCTTGATCGATGCTTAA 57.292 45.000 0.54 0.00 0.00 1.85
135 136 2.092968 ACTTGGCCTTGATCGATGCTTA 60.093 45.455 0.54 0.00 0.00 3.09
136 137 1.340405 ACTTGGCCTTGATCGATGCTT 60.340 47.619 0.54 0.00 0.00 3.91
137 138 0.254178 ACTTGGCCTTGATCGATGCT 59.746 50.000 0.54 0.00 0.00 3.79
138 139 1.064654 GAACTTGGCCTTGATCGATGC 59.935 52.381 0.54 0.00 0.00 3.91
139 140 2.636830 AGAACTTGGCCTTGATCGATG 58.363 47.619 0.54 0.00 0.00 3.84
140 141 3.012518 CAAGAACTTGGCCTTGATCGAT 58.987 45.455 3.32 0.00 41.56 3.59
141 142 2.426522 CAAGAACTTGGCCTTGATCGA 58.573 47.619 3.32 0.00 41.56 3.59
142 143 2.907910 CAAGAACTTGGCCTTGATCG 57.092 50.000 3.32 0.00 41.56 3.69
152 153 2.289010 GGGTCCAATTGCCAAGAACTTG 60.289 50.000 0.00 7.49 40.13 3.16
153 154 1.970640 GGGTCCAATTGCCAAGAACTT 59.029 47.619 0.00 0.00 0.00 2.66
154 155 1.133199 TGGGTCCAATTGCCAAGAACT 60.133 47.619 0.00 0.00 0.00 3.01
155 156 1.337118 TGGGTCCAATTGCCAAGAAC 58.663 50.000 0.00 0.00 0.00 3.01
156 157 1.901159 CATGGGTCCAATTGCCAAGAA 59.099 47.619 7.28 0.00 0.00 2.52
157 158 1.076841 TCATGGGTCCAATTGCCAAGA 59.923 47.619 7.28 6.01 0.00 3.02
158 159 1.559368 TCATGGGTCCAATTGCCAAG 58.441 50.000 7.28 3.92 0.00 3.61
159 160 1.622811 GTTCATGGGTCCAATTGCCAA 59.377 47.619 7.28 0.00 0.00 4.52
160 161 1.265236 GTTCATGGGTCCAATTGCCA 58.735 50.000 5.83 5.83 0.00 4.92
161 162 1.066929 GTGTTCATGGGTCCAATTGCC 60.067 52.381 0.00 0.00 0.00 4.52
162 163 1.066929 GGTGTTCATGGGTCCAATTGC 60.067 52.381 0.00 0.00 0.00 3.56
163 164 1.550072 GGGTGTTCATGGGTCCAATTG 59.450 52.381 0.00 0.00 0.00 2.32
164 165 1.148867 TGGGTGTTCATGGGTCCAATT 59.851 47.619 0.00 0.00 0.00 2.32
165 166 0.783206 TGGGTGTTCATGGGTCCAAT 59.217 50.000 0.00 0.00 0.00 3.16
166 167 0.783206 ATGGGTGTTCATGGGTCCAA 59.217 50.000 0.00 0.00 0.00 3.53
167 168 1.675007 TATGGGTGTTCATGGGTCCA 58.325 50.000 0.00 0.00 0.00 4.02
168 169 2.489073 GGATATGGGTGTTCATGGGTCC 60.489 54.545 0.00 0.00 0.00 4.46
169 170 2.443255 AGGATATGGGTGTTCATGGGTC 59.557 50.000 0.00 0.00 0.00 4.46
170 171 2.502745 AGGATATGGGTGTTCATGGGT 58.497 47.619 0.00 0.00 0.00 4.51
171 172 3.490348 GAAGGATATGGGTGTTCATGGG 58.510 50.000 0.00 0.00 0.00 4.00
172 173 3.141398 CGAAGGATATGGGTGTTCATGG 58.859 50.000 0.00 0.00 0.00 3.66
173 174 3.808728 ACGAAGGATATGGGTGTTCATG 58.191 45.455 0.00 0.00 0.00 3.07
174 175 4.080582 TCAACGAAGGATATGGGTGTTCAT 60.081 41.667 0.00 0.00 0.00 2.57
175 176 3.262151 TCAACGAAGGATATGGGTGTTCA 59.738 43.478 0.00 0.00 0.00 3.18
176 177 3.869065 TCAACGAAGGATATGGGTGTTC 58.131 45.455 0.00 0.00 0.00 3.18
177 178 3.992943 TCAACGAAGGATATGGGTGTT 57.007 42.857 0.00 0.00 0.00 3.32
178 179 3.992943 TTCAACGAAGGATATGGGTGT 57.007 42.857 0.00 0.00 0.00 4.16
179 180 4.941263 TCTTTTCAACGAAGGATATGGGTG 59.059 41.667 0.00 0.00 0.00 4.61
180 181 4.941873 GTCTTTTCAACGAAGGATATGGGT 59.058 41.667 0.00 0.00 0.00 4.51
181 182 4.941263 TGTCTTTTCAACGAAGGATATGGG 59.059 41.667 0.00 0.00 0.00 4.00
182 183 6.489675 CATGTCTTTTCAACGAAGGATATGG 58.510 40.000 0.00 0.00 30.33 2.74
183 184 5.967674 GCATGTCTTTTCAACGAAGGATATG 59.032 40.000 0.00 0.00 33.27 1.78
184 185 5.066505 GGCATGTCTTTTCAACGAAGGATAT 59.933 40.000 0.00 0.00 0.00 1.63
185 186 4.394920 GGCATGTCTTTTCAACGAAGGATA 59.605 41.667 0.00 0.00 0.00 2.59
186 187 3.191371 GGCATGTCTTTTCAACGAAGGAT 59.809 43.478 0.00 0.00 0.00 3.24
187 188 2.552315 GGCATGTCTTTTCAACGAAGGA 59.448 45.455 0.00 0.00 0.00 3.36
188 189 2.351738 GGGCATGTCTTTTCAACGAAGG 60.352 50.000 0.00 0.00 0.00 3.46
189 190 2.293122 TGGGCATGTCTTTTCAACGAAG 59.707 45.455 0.00 0.00 0.00 3.79
190 191 2.302260 TGGGCATGTCTTTTCAACGAA 58.698 42.857 0.00 0.00 0.00 3.85
191 192 1.974265 TGGGCATGTCTTTTCAACGA 58.026 45.000 0.00 0.00 0.00 3.85
192 193 2.598589 CATGGGCATGTCTTTTCAACG 58.401 47.619 0.00 0.00 34.23 4.10
193 194 2.340337 GCATGGGCATGTCTTTTCAAC 58.660 47.619 0.00 0.00 40.80 3.18
194 195 1.275856 GGCATGGGCATGTCTTTTCAA 59.724 47.619 0.00 0.00 43.71 2.69
195 196 0.896923 GGCATGGGCATGTCTTTTCA 59.103 50.000 0.00 0.00 43.71 2.69
196 197 3.746900 GGCATGGGCATGTCTTTTC 57.253 52.632 0.00 0.00 43.71 2.29
201 202 0.458669 CTTGAAGGCATGGGCATGTC 59.541 55.000 0.00 0.00 43.41 3.06
202 203 0.974010 CCTTGAAGGCATGGGCATGT 60.974 55.000 0.00 0.00 43.71 3.21
203 204 1.820581 CCTTGAAGGCATGGGCATG 59.179 57.895 0.00 0.00 43.71 4.06
204 205 4.368003 CCTTGAAGGCATGGGCAT 57.632 55.556 0.00 0.00 43.71 4.40
223 224 2.613691 GGTGCAATTGCCAAGATCTTG 58.386 47.619 26.94 25.75 41.18 3.02
224 225 1.551883 GGGTGCAATTGCCAAGATCTT 59.448 47.619 26.94 0.88 41.18 2.40
225 226 1.188863 GGGTGCAATTGCCAAGATCT 58.811 50.000 26.94 0.00 41.18 2.75
226 227 0.896923 TGGGTGCAATTGCCAAGATC 59.103 50.000 26.94 9.04 41.18 2.75
227 228 1.208535 CATGGGTGCAATTGCCAAGAT 59.791 47.619 26.94 11.47 41.18 2.40
228 229 0.609151 CATGGGTGCAATTGCCAAGA 59.391 50.000 26.94 6.00 41.18 3.02
229 230 0.609151 TCATGGGTGCAATTGCCAAG 59.391 50.000 26.94 14.69 41.18 3.61
230 231 1.054231 TTCATGGGTGCAATTGCCAA 58.946 45.000 26.94 7.20 41.18 4.52
231 232 0.321021 GTTCATGGGTGCAATTGCCA 59.679 50.000 26.94 17.93 41.18 4.92
232 233 0.321021 TGTTCATGGGTGCAATTGCC 59.679 50.000 26.94 17.54 41.18 4.52
233 234 1.001181 AGTGTTCATGGGTGCAATTGC 59.999 47.619 23.69 23.69 42.50 3.56
234 235 2.296752 TGAGTGTTCATGGGTGCAATTG 59.703 45.455 0.00 0.00 0.00 2.32
235 236 2.596346 TGAGTGTTCATGGGTGCAATT 58.404 42.857 0.00 0.00 0.00 2.32
236 237 2.291209 TGAGTGTTCATGGGTGCAAT 57.709 45.000 0.00 0.00 0.00 3.56
237 238 2.291209 ATGAGTGTTCATGGGTGCAA 57.709 45.000 0.00 0.00 42.41 4.08
238 239 3.544684 GATATGAGTGTTCATGGGTGCA 58.455 45.455 0.00 0.00 43.76 4.57
239 240 2.880890 GGATATGAGTGTTCATGGGTGC 59.119 50.000 0.00 0.00 43.76 5.01
240 241 4.428294 AGGATATGAGTGTTCATGGGTG 57.572 45.455 0.00 0.00 43.76 4.61
241 242 4.474651 TGAAGGATATGAGTGTTCATGGGT 59.525 41.667 0.00 0.00 43.76 4.51
242 243 5.039920 TGAAGGATATGAGTGTTCATGGG 57.960 43.478 0.00 0.00 43.76 4.00
243 244 8.681486 TTAATGAAGGATATGAGTGTTCATGG 57.319 34.615 0.00 0.00 43.76 3.66
275 276 2.171003 GCTAGTGCCCATGGAGTTTTT 58.829 47.619 15.22 0.00 0.00 1.94
276 277 1.839424 GCTAGTGCCCATGGAGTTTT 58.161 50.000 15.22 0.00 0.00 2.43
277 278 0.392998 CGCTAGTGCCCATGGAGTTT 60.393 55.000 15.22 0.00 35.36 2.66
278 279 1.221840 CGCTAGTGCCCATGGAGTT 59.778 57.895 15.22 0.00 35.36 3.01
279 280 2.903357 CGCTAGTGCCCATGGAGT 59.097 61.111 15.22 0.00 35.36 3.85
280 281 2.590007 GCGCTAGTGCCCATGGAG 60.590 66.667 17.70 2.70 35.36 3.86
288 289 4.530857 ATCCGTGGGCGCTAGTGC 62.531 66.667 20.17 20.17 36.67 4.40
289 290 0.179094 TAAATCCGTGGGCGCTAGTG 60.179 55.000 7.64 0.00 36.67 2.74
290 291 0.756903 ATAAATCCGTGGGCGCTAGT 59.243 50.000 7.64 0.00 36.67 2.57
291 292 1.531149 CAATAAATCCGTGGGCGCTAG 59.469 52.381 7.64 0.00 36.67 3.42
292 293 1.139256 TCAATAAATCCGTGGGCGCTA 59.861 47.619 7.64 0.00 36.67 4.26
293 294 0.107410 TCAATAAATCCGTGGGCGCT 60.107 50.000 7.64 0.00 36.67 5.92
294 295 0.951558 ATCAATAAATCCGTGGGCGC 59.048 50.000 0.00 0.00 36.67 6.53
295 296 5.416083 TCTATATCAATAAATCCGTGGGCG 58.584 41.667 0.00 0.00 37.95 6.13
296 297 7.103641 TCTTCTATATCAATAAATCCGTGGGC 58.896 38.462 0.00 0.00 0.00 5.36
297 298 9.155975 CTTCTTCTATATCAATAAATCCGTGGG 57.844 37.037 0.00 0.00 0.00 4.61
298 299 8.660373 GCTTCTTCTATATCAATAAATCCGTGG 58.340 37.037 0.00 0.00 0.00 4.94
299 300 9.208022 TGCTTCTTCTATATCAATAAATCCGTG 57.792 33.333 0.00 0.00 0.00 4.94
300 301 9.950496 ATGCTTCTTCTATATCAATAAATCCGT 57.050 29.630 0.00 0.00 0.00 4.69
305 306 9.950496 GAGGGATGCTTCTTCTATATCAATAAA 57.050 33.333 0.00 0.00 0.00 1.40
306 307 9.104713 TGAGGGATGCTTCTTCTATATCAATAA 57.895 33.333 0.00 0.00 0.00 1.40
307 308 8.670521 TGAGGGATGCTTCTTCTATATCAATA 57.329 34.615 0.00 0.00 0.00 1.90
308 309 7.565190 TGAGGGATGCTTCTTCTATATCAAT 57.435 36.000 0.00 0.00 0.00 2.57
309 310 7.236225 TCATGAGGGATGCTTCTTCTATATCAA 59.764 37.037 0.00 0.00 31.32 2.57
310 311 6.727697 TCATGAGGGATGCTTCTTCTATATCA 59.272 38.462 0.00 0.00 31.32 2.15
311 312 7.123997 TCTCATGAGGGATGCTTCTTCTATATC 59.876 40.741 22.42 0.00 31.32 1.63
312 313 6.958778 TCTCATGAGGGATGCTTCTTCTATAT 59.041 38.462 22.42 0.00 31.32 0.86
313 314 6.318112 TCTCATGAGGGATGCTTCTTCTATA 58.682 40.000 22.42 0.00 31.32 1.31
314 315 5.153675 TCTCATGAGGGATGCTTCTTCTAT 58.846 41.667 22.42 0.00 31.32 1.98
315 316 4.550669 TCTCATGAGGGATGCTTCTTCTA 58.449 43.478 22.42 0.00 31.32 2.10
316 317 3.382278 TCTCATGAGGGATGCTTCTTCT 58.618 45.455 22.42 0.00 31.32 2.85
317 318 3.834489 TCTCATGAGGGATGCTTCTTC 57.166 47.619 22.42 0.00 31.32 2.87
318 319 4.792513 ATTCTCATGAGGGATGCTTCTT 57.207 40.909 22.42 0.00 31.32 2.52
319 320 4.446023 GGAATTCTCATGAGGGATGCTTCT 60.446 45.833 22.42 2.49 31.32 2.85
320 321 3.819902 GGAATTCTCATGAGGGATGCTTC 59.180 47.826 22.42 14.34 31.32 3.86
321 322 3.203710 TGGAATTCTCATGAGGGATGCTT 59.796 43.478 22.42 7.33 31.32 3.91
322 323 2.781757 TGGAATTCTCATGAGGGATGCT 59.218 45.455 22.42 3.80 31.32 3.79
323 324 3.147629 CTGGAATTCTCATGAGGGATGC 58.852 50.000 22.42 14.53 31.32 3.91
324 325 4.701651 TCTGGAATTCTCATGAGGGATG 57.298 45.455 22.42 7.14 0.00 3.51
325 326 5.722172 TTTCTGGAATTCTCATGAGGGAT 57.278 39.130 22.42 13.69 0.00 3.85
326 327 5.722172 ATTTCTGGAATTCTCATGAGGGA 57.278 39.130 22.42 12.00 0.00 4.20
327 328 6.388435 GAATTTCTGGAATTCTCATGAGGG 57.612 41.667 22.42 0.00 46.59 4.30
351 352 1.074872 GTTCGATTCACGTCGGGGAC 61.075 60.000 0.00 0.00 41.74 4.46
352 353 1.213537 GTTCGATTCACGTCGGGGA 59.786 57.895 0.00 0.00 41.74 4.81
353 354 0.801067 GAGTTCGATTCACGTCGGGG 60.801 60.000 0.00 0.00 41.74 5.73
354 355 0.170561 AGAGTTCGATTCACGTCGGG 59.829 55.000 0.00 0.00 41.74 5.14
355 356 1.260206 CAGAGTTCGATTCACGTCGG 58.740 55.000 0.00 0.00 41.74 4.79
356 357 1.260206 CCAGAGTTCGATTCACGTCG 58.740 55.000 0.00 0.00 43.13 5.12
357 358 2.251893 GACCAGAGTTCGATTCACGTC 58.748 52.381 0.00 0.00 43.13 4.34
358 359 1.401148 CGACCAGAGTTCGATTCACGT 60.401 52.381 0.00 0.00 43.13 4.49
359 360 1.260206 CGACCAGAGTTCGATTCACG 58.740 55.000 0.00 0.00 44.09 4.35
360 361 2.349297 ACGACCAGAGTTCGATTCAC 57.651 50.000 0.00 0.00 0.00 3.18
361 362 3.119602 CCTAACGACCAGAGTTCGATTCA 60.120 47.826 0.00 0.00 33.42 2.57
362 363 3.119566 ACCTAACGACCAGAGTTCGATTC 60.120 47.826 0.00 0.00 33.42 2.52
363 364 2.824341 ACCTAACGACCAGAGTTCGATT 59.176 45.455 0.00 0.00 33.42 3.34
364 365 2.444421 ACCTAACGACCAGAGTTCGAT 58.556 47.619 0.00 0.00 33.42 3.59
365 366 1.901591 ACCTAACGACCAGAGTTCGA 58.098 50.000 0.00 0.00 33.42 3.71
366 367 2.719426 AACCTAACGACCAGAGTTCG 57.281 50.000 0.00 0.00 33.42 3.95
367 368 4.874970 TGTAAACCTAACGACCAGAGTTC 58.125 43.478 0.00 0.00 33.42 3.01
368 369 4.942761 TGTAAACCTAACGACCAGAGTT 57.057 40.909 0.00 0.00 35.75 3.01
369 370 4.942761 TTGTAAACCTAACGACCAGAGT 57.057 40.909 0.00 0.00 0.00 3.24
370 371 5.475719 TGATTGTAAACCTAACGACCAGAG 58.524 41.667 0.00 0.00 0.00 3.35
371 372 5.471556 TGATTGTAAACCTAACGACCAGA 57.528 39.130 0.00 0.00 0.00 3.86
372 373 5.447279 GCATGATTGTAAACCTAACGACCAG 60.447 44.000 0.00 0.00 0.00 4.00
373 374 4.393680 GCATGATTGTAAACCTAACGACCA 59.606 41.667 0.00 0.00 0.00 4.02
374 375 4.493545 CGCATGATTGTAAACCTAACGACC 60.494 45.833 0.00 0.00 0.00 4.79
375 376 4.574759 CGCATGATTGTAAACCTAACGAC 58.425 43.478 0.00 0.00 0.00 4.34
376 377 3.062909 GCGCATGATTGTAAACCTAACGA 59.937 43.478 0.30 0.00 0.00 3.85
377 378 3.350912 GCGCATGATTGTAAACCTAACG 58.649 45.455 0.30 0.00 0.00 3.18
378 379 3.488553 GGGCGCATGATTGTAAACCTAAC 60.489 47.826 10.83 0.00 0.00 2.34
379 380 2.685897 GGGCGCATGATTGTAAACCTAA 59.314 45.455 10.83 0.00 0.00 2.69
380 381 2.294074 GGGCGCATGATTGTAAACCTA 58.706 47.619 10.83 0.00 0.00 3.08
381 382 1.102978 GGGCGCATGATTGTAAACCT 58.897 50.000 10.83 0.00 0.00 3.50
382 383 0.102300 GGGGCGCATGATTGTAAACC 59.898 55.000 10.83 0.00 0.00 3.27
383 384 0.102300 GGGGGCGCATGATTGTAAAC 59.898 55.000 10.83 0.00 0.00 2.01
384 385 0.323816 TGGGGGCGCATGATTGTAAA 60.324 50.000 10.83 0.00 0.00 2.01
385 386 0.323816 TTGGGGGCGCATGATTGTAA 60.324 50.000 10.83 0.00 0.00 2.41
386 387 1.034838 GTTGGGGGCGCATGATTGTA 61.035 55.000 10.83 0.00 0.00 2.41
387 388 2.037049 TTGGGGGCGCATGATTGT 59.963 55.556 10.83 0.00 0.00 2.71
388 389 2.495866 GTTGGGGGCGCATGATTG 59.504 61.111 10.83 0.00 0.00 2.67
389 390 2.759560 GGTTGGGGGCGCATGATT 60.760 61.111 10.83 0.00 0.00 2.57
390 391 4.059304 TGGTTGGGGGCGCATGAT 62.059 61.111 10.83 0.00 0.00 2.45
401 402 1.754234 GGCATAGCCCAGTGGTTGG 60.754 63.158 8.74 0.00 44.06 3.77
402 403 3.924507 GGCATAGCCCAGTGGTTG 58.075 61.111 8.74 1.51 44.06 3.77
412 413 1.521681 GTGAGGACGTGGGCATAGC 60.522 63.158 0.00 0.00 0.00 2.97
413 414 0.103208 GAGTGAGGACGTGGGCATAG 59.897 60.000 0.00 0.00 0.00 2.23
414 415 0.613572 TGAGTGAGGACGTGGGCATA 60.614 55.000 0.00 0.00 0.00 3.14
415 416 1.267574 ATGAGTGAGGACGTGGGCAT 61.268 55.000 0.00 0.00 0.00 4.40
416 417 0.613572 TATGAGTGAGGACGTGGGCA 60.614 55.000 0.00 0.00 0.00 5.36
417 418 0.753262 ATATGAGTGAGGACGTGGGC 59.247 55.000 0.00 0.00 0.00 5.36
418 419 1.341531 GGATATGAGTGAGGACGTGGG 59.658 57.143 0.00 0.00 0.00 4.61
419 420 2.311463 AGGATATGAGTGAGGACGTGG 58.689 52.381 0.00 0.00 0.00 4.94
420 421 3.381590 TGAAGGATATGAGTGAGGACGTG 59.618 47.826 0.00 0.00 0.00 4.49
421 422 3.632333 TGAAGGATATGAGTGAGGACGT 58.368 45.455 0.00 0.00 0.00 4.34
422 423 4.862902 ATGAAGGATATGAGTGAGGACG 57.137 45.455 0.00 0.00 0.00 4.79
423 424 6.166984 TCAATGAAGGATATGAGTGAGGAC 57.833 41.667 0.00 0.00 0.00 3.85
424 425 6.813293 TTCAATGAAGGATATGAGTGAGGA 57.187 37.500 0.00 0.00 0.00 3.71
425 426 7.772292 TCTTTTCAATGAAGGATATGAGTGAGG 59.228 37.037 0.00 0.00 0.00 3.86
426 427 8.610896 GTCTTTTCAATGAAGGATATGAGTGAG 58.389 37.037 0.00 0.00 0.00 3.51
427 428 8.102676 TGTCTTTTCAATGAAGGATATGAGTGA 58.897 33.333 0.00 0.00 0.00 3.41
428 429 8.272545 TGTCTTTTCAATGAAGGATATGAGTG 57.727 34.615 0.00 0.00 0.00 3.51
429 430 8.900781 CATGTCTTTTCAATGAAGGATATGAGT 58.099 33.333 20.85 0.57 32.66 3.41
430 431 7.861372 GCATGTCTTTTCAATGAAGGATATGAG 59.139 37.037 25.24 12.04 32.66 2.90
458 459 4.415596 ACATCTTTTCACCAAAGGGCATA 58.584 39.130 0.00 0.00 42.18 3.14
481 482 3.935203 CAGCAATGTCTTATCACGAAGGT 59.065 43.478 0.00 0.00 0.00 3.50
482 483 4.183865 TCAGCAATGTCTTATCACGAAGG 58.816 43.478 0.00 0.00 0.00 3.46
487 488 7.533426 ACATCTTTTCAGCAATGTCTTATCAC 58.467 34.615 0.00 0.00 0.00 3.06
501 502 6.530913 TTCAACGAAGAGACATCTTTTCAG 57.469 37.500 11.47 7.38 45.98 3.02
573 574 7.120432 GTCTTTATGCCAAGAGACATCTTTTCT 59.880 37.037 0.00 0.00 43.45 2.52
589 590 3.071479 TCAAGGAACGTGTCTTTATGCC 58.929 45.455 0.00 0.00 39.30 4.40
763 764 6.869315 TTTGATGACAAGTATTTTCGGACA 57.131 33.333 0.00 0.00 37.32 4.02
882 883 9.544314 CATAAACAAATTCGACGGTAATGTTTA 57.456 29.630 20.87 20.87 42.46 2.01
1031 2772 2.915349 CTATGCTCATCTGGCAACTGT 58.085 47.619 0.00 0.00 43.14 3.55
1032 2773 1.602851 GCTATGCTCATCTGGCAACTG 59.397 52.381 0.00 0.00 43.14 3.16
1058 2799 3.219281 TCAAGCACAAGAAACCTAACCC 58.781 45.455 0.00 0.00 0.00 4.11
1077 2818 1.352622 AACTCTGGTGGGCTGGTTCA 61.353 55.000 0.00 0.00 0.00 3.18
1078 2819 0.178990 AAACTCTGGTGGGCTGGTTC 60.179 55.000 0.00 0.00 0.00 3.62
1102 2843 4.188462 CGAACACCAATGCCAAGTATAGA 58.812 43.478 0.00 0.00 0.00 1.98
1118 2859 3.575965 AATCCAGGAAAATGCGAACAC 57.424 42.857 0.00 0.00 0.00 3.32
1124 2865 7.550712 AGTCTGAAATAAATCCAGGAAAATGC 58.449 34.615 0.00 0.00 0.00 3.56
1167 2908 1.751927 GGAACGTCTCCTCCCGCTA 60.752 63.158 8.87 0.00 41.61 4.26
1202 2951 6.467047 GTCAGCACAATATCTTGAAATTGACG 59.533 38.462 0.00 0.00 36.73 4.35
1223 2972 1.847818 TCTTCGAAACACCGTGTCAG 58.152 50.000 4.23 0.00 0.00 3.51
1226 2975 3.005050 TGAGTATCTTCGAAACACCGTGT 59.995 43.478 0.00 0.00 34.92 4.49
1233 2982 8.407064 TCCTTTCTCTATGAGTATCTTCGAAAC 58.593 37.037 0.00 0.00 34.92 2.78
1252 3001 4.468510 TGAACCCACACGTATATCCTTTCT 59.531 41.667 0.00 0.00 0.00 2.52
1254 3003 4.829872 TGAACCCACACGTATATCCTTT 57.170 40.909 0.00 0.00 0.00 3.11
1263 3012 1.640917 ACCTCTATGAACCCACACGT 58.359 50.000 0.00 0.00 0.00 4.49
1264 3013 3.194968 ACTTACCTCTATGAACCCACACG 59.805 47.826 0.00 0.00 0.00 4.49
1279 3028 8.687292 TCGTAGATGATTACATACACTTACCT 57.313 34.615 0.00 0.00 36.82 3.08
1280 3029 9.909644 AATCGTAGATGATTACATACACTTACC 57.090 33.333 0.00 0.00 45.12 2.85
1287 3036 8.449397 ACGGTAGAATCGTAGATGATTACATAC 58.551 37.037 0.00 2.57 45.12 2.39
1307 3057 5.727434 AGGGAGTATGTTTTAACACGGTAG 58.273 41.667 0.00 0.00 42.51 3.18
1410 3170 2.988493 CCGTCCGAAAATACTTGTCGAA 59.012 45.455 1.13 0.00 36.92 3.71
1411 3171 2.228582 TCCGTCCGAAAATACTTGTCGA 59.771 45.455 1.13 0.00 36.92 4.20
1412 3172 2.597305 CTCCGTCCGAAAATACTTGTCG 59.403 50.000 0.00 0.00 34.58 4.35
1424 3184 2.301346 GTTATTACTCCCTCCGTCCGA 58.699 52.381 0.00 0.00 0.00 4.55
1444 3204 6.524586 GGAAAGCTATCGTGTCAAGATTTTTG 59.475 38.462 6.58 0.00 29.63 2.44
1450 3210 2.093658 GGGGAAAGCTATCGTGTCAAGA 60.094 50.000 0.00 0.00 0.00 3.02
1451 3211 2.280628 GGGGAAAGCTATCGTGTCAAG 58.719 52.381 0.00 0.00 0.00 3.02
1675 3440 0.888619 CAGCCTCTACAGTCAACCGA 59.111 55.000 0.00 0.00 0.00 4.69
1677 3442 2.841442 AACAGCCTCTACAGTCAACC 57.159 50.000 0.00 0.00 0.00 3.77
1742 3514 3.244561 ACTGATGAGTGGAATTGGTCGTT 60.245 43.478 0.00 0.00 0.00 3.85
1759 3533 1.872313 GGCTAGCTACGTACGACTGAT 59.128 52.381 24.41 12.09 0.00 2.90
1760 3534 1.293924 GGCTAGCTACGTACGACTGA 58.706 55.000 24.41 3.02 0.00 3.41
1764 3538 2.037641 TCCTATGGCTAGCTACGTACGA 59.962 50.000 24.41 4.69 0.00 3.43
1767 3541 2.818432 GCTTCCTATGGCTAGCTACGTA 59.182 50.000 15.72 3.78 30.95 3.57
1808 3588 5.404466 AAGATGGACACAGAAGAGAAGAG 57.596 43.478 0.00 0.00 0.00 2.85
1827 3613 6.702282 GTCCGAAGAAGAAGAAGAAGAAAAGA 59.298 38.462 0.00 0.00 0.00 2.52
1844 3630 2.683968 CAGACATTTTCCGTCCGAAGA 58.316 47.619 0.00 0.00 33.70 2.87
1845 3631 1.128692 GCAGACATTTTCCGTCCGAAG 59.871 52.381 0.00 0.00 33.70 3.79
1846 3632 1.153353 GCAGACATTTTCCGTCCGAA 58.847 50.000 0.00 0.00 33.70 4.30
1887 3673 2.452600 AAGGAGGCTTGTTGAACCAA 57.547 45.000 0.00 0.00 0.00 3.67
2070 3862 1.913951 TTGTGATCTGGAGGCGGCAT 61.914 55.000 13.08 0.00 0.00 4.40
2075 3867 0.035630 AGCAGTTGTGATCTGGAGGC 60.036 55.000 0.00 0.00 33.98 4.70
2106 3898 1.448985 GATTGGCGGAGTTGTTAGCA 58.551 50.000 0.00 0.00 0.00 3.49
2109 3901 0.988832 AGGGATTGGCGGAGTTGTTA 59.011 50.000 0.00 0.00 0.00 2.41
2114 3912 2.041265 AGGAGGGATTGGCGGAGT 59.959 61.111 0.00 0.00 0.00 3.85
2709 4510 4.783621 GGCTGCATCTGGTCCGCA 62.784 66.667 0.50 0.00 0.00 5.69
2733 4540 0.607489 AGTACTCGTACGGCTGGTGT 60.607 55.000 16.52 7.63 40.80 4.16
2748 4555 1.332065 GGCCCGTCGTAGTAGAAGTAC 59.668 57.143 0.00 0.00 0.00 2.73
2836 4643 1.017387 GATTCGGCCTTGACACCATC 58.983 55.000 0.00 0.00 0.00 3.51
2841 4648 1.218047 CGGAGATTCGGCCTTGACA 59.782 57.895 0.00 0.00 0.00 3.58
2932 4742 2.528743 CCATGACGGCGACTGATGC 61.529 63.158 16.62 0.00 0.00 3.91
2988 4798 2.922503 TTCTGCTCCAGGTGGCGA 60.923 61.111 0.00 0.00 34.44 5.54
3145 4955 1.630223 TCCAACCTTTGCATGCATGA 58.370 45.000 30.64 12.55 0.00 3.07
3146 4956 2.070783 GTTCCAACCTTTGCATGCATG 58.929 47.619 23.37 22.70 0.00 4.06
3147 4957 1.337074 CGTTCCAACCTTTGCATGCAT 60.337 47.619 23.37 2.82 0.00 3.96
3148 4958 0.031857 CGTTCCAACCTTTGCATGCA 59.968 50.000 18.46 18.46 0.00 3.96
3149 4959 0.667184 CCGTTCCAACCTTTGCATGC 60.667 55.000 11.82 11.82 0.00 4.06
3238 5051 5.056894 AATGCAACAGAGAAGAAGCATTC 57.943 39.130 0.00 0.00 46.21 2.67
3265 5078 4.699637 ACACTACGTGGAAACTGAATTGA 58.300 39.130 5.70 0.00 37.94 2.57
3266 5079 5.418310 AACACTACGTGGAAACTGAATTG 57.582 39.130 5.70 0.00 37.94 2.32
3271 5084 5.045215 TGAACTAACACTACGTGGAAACTG 58.955 41.667 5.70 0.00 37.94 3.16
3356 5169 0.254462 TCCTCGCATAACCAATGGCA 59.746 50.000 0.00 0.00 35.99 4.92
3427 5240 9.771534 GCTATTCCTTTCATAGATGTTCTAACT 57.228 33.333 0.00 0.00 31.96 2.24
3428 5241 9.771534 AGCTATTCCTTTCATAGATGTTCTAAC 57.228 33.333 0.00 0.00 31.96 2.34
3431 5244 8.270744 ACAAGCTATTCCTTTCATAGATGTTCT 58.729 33.333 0.00 0.00 28.83 3.01
3432 5245 8.443953 ACAAGCTATTCCTTTCATAGATGTTC 57.556 34.615 0.00 0.00 28.83 3.18
3433 5246 8.680903 CAACAAGCTATTCCTTTCATAGATGTT 58.319 33.333 0.00 0.00 36.85 2.71
3434 5247 7.284034 CCAACAAGCTATTCCTTTCATAGATGT 59.716 37.037 0.00 0.00 31.93 3.06
3435 5248 7.500227 TCCAACAAGCTATTCCTTTCATAGATG 59.500 37.037 0.00 0.00 0.00 2.90
3455 5431 9.316730 GATACGGTATATTTTTGTAGTCCAACA 57.683 33.333 0.00 0.00 31.20 3.33
3522 5500 6.596888 AGGAGTGAACTGTTCATCAATACATG 59.403 38.462 24.44 0.00 42.47 3.21
3572 5604 9.653287 TTCGAAAGTGTGTCAATTAGATAGAAT 57.347 29.630 0.00 0.00 0.00 2.40
3583 5615 4.572795 TGCAAGTATTCGAAAGTGTGTCAA 59.427 37.500 0.00 0.00 0.00 3.18
3605 5637 2.280628 GCGGTTCAAGGGAGTAGATTG 58.719 52.381 0.00 0.00 0.00 2.67
3612 5644 1.407258 TGTTTTTGCGGTTCAAGGGAG 59.593 47.619 0.00 0.00 35.84 4.30
3613 5645 1.475403 TGTTTTTGCGGTTCAAGGGA 58.525 45.000 0.00 0.00 35.84 4.20
3614 5646 2.035832 AGATGTTTTTGCGGTTCAAGGG 59.964 45.455 0.00 0.00 35.84 3.95
3615 5647 3.369546 AGATGTTTTTGCGGTTCAAGG 57.630 42.857 0.00 0.00 35.84 3.61
3616 5648 8.687824 AATATAAGATGTTTTTGCGGTTCAAG 57.312 30.769 0.00 0.00 35.84 3.02
3618 5650 9.781834 CTAAATATAAGATGTTTTTGCGGTTCA 57.218 29.630 0.00 0.00 0.00 3.18
3619 5651 9.233232 CCTAAATATAAGATGTTTTTGCGGTTC 57.767 33.333 0.00 0.00 0.00 3.62
3620 5652 8.745590 ACCTAAATATAAGATGTTTTTGCGGTT 58.254 29.630 0.00 0.00 0.00 4.44
3621 5653 8.288689 ACCTAAATATAAGATGTTTTTGCGGT 57.711 30.769 0.00 0.00 0.00 5.68
3622 5654 9.659830 GTACCTAAATATAAGATGTTTTTGCGG 57.340 33.333 0.00 0.00 0.00 5.69
3623 5655 9.365311 CGTACCTAAATATAAGATGTTTTTGCG 57.635 33.333 0.00 0.00 0.00 4.85
3624 5656 9.659830 CCGTACCTAAATATAAGATGTTTTTGC 57.340 33.333 0.00 0.00 0.00 3.68
3627 5659 9.774413 CCTCCGTACCTAAATATAAGATGTTTT 57.226 33.333 0.00 0.00 0.00 2.43
3628 5660 8.373220 CCCTCCGTACCTAAATATAAGATGTTT 58.627 37.037 0.00 0.00 0.00 2.83
3629 5661 7.731688 TCCCTCCGTACCTAAATATAAGATGTT 59.268 37.037 0.00 0.00 0.00 2.71
3630 5662 7.243824 TCCCTCCGTACCTAAATATAAGATGT 58.756 38.462 0.00 0.00 0.00 3.06
3631 5663 7.396623 ACTCCCTCCGTACCTAAATATAAGATG 59.603 40.741 0.00 0.00 0.00 2.90
3632 5664 7.477008 ACTCCCTCCGTACCTAAATATAAGAT 58.523 38.462 0.00 0.00 0.00 2.40
3633 5665 6.856757 ACTCCCTCCGTACCTAAATATAAGA 58.143 40.000 0.00 0.00 0.00 2.10
3634 5666 7.887495 ACTACTCCCTCCGTACCTAAATATAAG 59.113 40.741 0.00 0.00 0.00 1.73
3635 5667 7.759607 ACTACTCCCTCCGTACCTAAATATAA 58.240 38.462 0.00 0.00 0.00 0.98
3636 5668 7.335127 ACTACTCCCTCCGTACCTAAATATA 57.665 40.000 0.00 0.00 0.00 0.86
3637 5669 6.211505 ACTACTCCCTCCGTACCTAAATAT 57.788 41.667 0.00 0.00 0.00 1.28
3638 5670 5.653255 ACTACTCCCTCCGTACCTAAATA 57.347 43.478 0.00 0.00 0.00 1.40
3639 5671 4.533001 ACTACTCCCTCCGTACCTAAAT 57.467 45.455 0.00 0.00 0.00 1.40
3640 5672 4.263905 TGAACTACTCCCTCCGTACCTAAA 60.264 45.833 0.00 0.00 0.00 1.85
3641 5673 3.266772 TGAACTACTCCCTCCGTACCTAA 59.733 47.826 0.00 0.00 0.00 2.69
3642 5674 2.846206 TGAACTACTCCCTCCGTACCTA 59.154 50.000 0.00 0.00 0.00 3.08
3643 5675 1.637553 TGAACTACTCCCTCCGTACCT 59.362 52.381 0.00 0.00 0.00 3.08
3644 5676 2.134789 TGAACTACTCCCTCCGTACC 57.865 55.000 0.00 0.00 0.00 3.34
3645 5677 3.509184 ACTTTGAACTACTCCCTCCGTAC 59.491 47.826 0.00 0.00 0.00 3.67
3646 5678 3.771216 ACTTTGAACTACTCCCTCCGTA 58.229 45.455 0.00 0.00 0.00 4.02
3647 5679 2.606378 ACTTTGAACTACTCCCTCCGT 58.394 47.619 0.00 0.00 0.00 4.69
3648 5680 3.679824 AACTTTGAACTACTCCCTCCG 57.320 47.619 0.00 0.00 0.00 4.63
3649 5681 7.997773 AAATAAACTTTGAACTACTCCCTCC 57.002 36.000 0.00 0.00 0.00 4.30
3650 5682 9.063615 TGAAAATAAACTTTGAACTACTCCCTC 57.936 33.333 0.00 0.00 0.00 4.30
3651 5683 8.990163 TGAAAATAAACTTTGAACTACTCCCT 57.010 30.769 0.00 0.00 0.00 4.20
3652 5684 9.626045 CATGAAAATAAACTTTGAACTACTCCC 57.374 33.333 0.00 0.00 0.00 4.30
3653 5685 9.129209 GCATGAAAATAAACTTTGAACTACTCC 57.871 33.333 0.00 0.00 0.00 3.85
3654 5686 9.129209 GGCATGAAAATAAACTTTGAACTACTC 57.871 33.333 0.00 0.00 0.00 2.59
3655 5687 7.807907 CGGCATGAAAATAAACTTTGAACTACT 59.192 33.333 0.00 0.00 0.00 2.57
3690 5722 7.571428 GCAACTTAGTTCCAGCAAAACTACTAG 60.571 40.741 0.00 0.00 38.57 2.57
3731 5763 0.250858 TCACCGACTCGACTAACCCA 60.251 55.000 0.00 0.00 0.00 4.51
3736 5768 1.467734 GCTTCTTCACCGACTCGACTA 59.532 52.381 0.00 0.00 0.00 2.59
3743 5775 0.944386 TTGCTTGCTTCTTCACCGAC 59.056 50.000 0.00 0.00 0.00 4.79
3750 5782 1.571460 CGTCGCTTGCTTGCTTCTT 59.429 52.632 0.00 0.00 0.00 2.52
3822 5855 4.838152 CGTGTCCATGGGCCTCGG 62.838 72.222 15.27 5.12 0.00 4.63
3883 5917 1.667154 ATGCTTCACGCTCGCCTCTA 61.667 55.000 0.00 0.00 40.11 2.43
3885 5919 2.510238 ATGCTTCACGCTCGCCTC 60.510 61.111 0.00 0.00 40.11 4.70
3893 5927 0.447406 TTGAATCGCCATGCTTCACG 59.553 50.000 0.00 0.00 0.00 4.35
3894 5928 1.202222 CCTTGAATCGCCATGCTTCAC 60.202 52.381 0.00 0.00 0.00 3.18
3899 5933 1.065273 CAGCCTTGAATCGCCATGC 59.935 57.895 0.00 0.00 0.00 4.06
3901 5935 1.454479 CCCAGCCTTGAATCGCCAT 60.454 57.895 0.00 0.00 0.00 4.40
3904 5938 2.830370 CCCCCAGCCTTGAATCGC 60.830 66.667 0.00 0.00 0.00 4.58
3928 5962 3.343617 CATCCCTTTCTAAACTGGCGAA 58.656 45.455 0.00 0.00 0.00 4.70
3942 5976 4.096003 CACCCGCGTCCATCCCTT 62.096 66.667 4.92 0.00 0.00 3.95
3972 6006 4.012895 CTTCACCGCCGCACACAC 62.013 66.667 0.00 0.00 0.00 3.82
3973 6007 4.228567 TCTTCACCGCCGCACACA 62.229 61.111 0.00 0.00 0.00 3.72
3974 6008 3.414700 CTCTTCACCGCCGCACAC 61.415 66.667 0.00 0.00 0.00 3.82
3977 6011 2.048222 CTTCTCTTCACCGCCGCA 60.048 61.111 0.00 0.00 0.00 5.69
3997 6031 4.489771 CACCATCCTCGTGGCCCC 62.490 72.222 0.00 0.00 43.27 5.80
4009 6043 4.778143 GCGACGCTTCCCCACCAT 62.778 66.667 13.73 0.00 0.00 3.55
4132 6167 3.697045 ACCAGTCGATTTGTTTTGAACCA 59.303 39.130 0.00 0.00 0.00 3.67
4137 6172 7.326063 GGAAATTAGACCAGTCGATTTGTTTTG 59.674 37.037 15.27 0.00 33.59 2.44
4153 6188 7.360691 GGTCAACCGACTAAAAGGAAATTAGAC 60.361 40.741 0.67 0.00 42.21 2.59
4163 6199 2.853235 AGGGGTCAACCGACTAAAAG 57.147 50.000 0.00 0.00 42.21 2.27
4167 6203 0.685458 GGCTAGGGGTCAACCGACTA 60.685 60.000 0.00 0.00 42.21 2.59
4173 6209 0.912486 ATGACTGGCTAGGGGTCAAC 59.088 55.000 0.85 0.00 42.14 3.18
4174 6210 1.668826 AATGACTGGCTAGGGGTCAA 58.331 50.000 0.85 0.00 42.14 3.18
4195 6231 9.860898 AAAATTCTTAACCAATGAAGCTATGAC 57.139 29.630 0.00 0.00 0.00 3.06
4209 6245 8.130469 TCGTCTGGTTAACAAAAATTCTTAACC 58.870 33.333 8.10 11.03 45.21 2.85
4212 6248 8.665643 TCTCGTCTGGTTAACAAAAATTCTTA 57.334 30.769 8.10 0.00 0.00 2.10
4229 6265 2.099756 TGCCACAGTATCATCTCGTCTG 59.900 50.000 0.00 0.00 0.00 3.51
4230 6266 2.099921 GTGCCACAGTATCATCTCGTCT 59.900 50.000 0.00 0.00 0.00 4.18
4232 6268 2.099921 GAGTGCCACAGTATCATCTCGT 59.900 50.000 0.00 0.00 0.00 4.18
4244 6281 4.153475 GCGATAAACTTAAAGAGTGCCACA 59.847 41.667 0.00 0.00 39.00 4.17
4266 6303 5.760193 TGTACAATGAAATTCATTTGCGC 57.240 34.783 17.65 0.00 44.03 6.09
4267 6304 8.060679 TGTTTTGTACAATGAAATTCATTTGCG 58.939 29.630 17.65 10.08 44.03 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.