Multiple sequence alignment - TraesCS5B01G191100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G191100 chr5B 100.000 5656 0 0 1 5656 344934104 344939759 0.000000e+00 10445
1 TraesCS5B01G191100 chr5A 94.398 4231 152 24 876 5081 395873210 395869040 0.000000e+00 6421
2 TraesCS5B01G191100 chr5A 88.280 529 45 7 5094 5613 395869059 395868539 8.050000e-173 617
3 TraesCS5B01G191100 chr5A 94.702 151 5 3 780 929 395873378 395873230 1.230000e-56 231
4 TraesCS5B01G191100 chr5D 96.120 3608 94 26 781 4359 301986385 301989975 0.000000e+00 5845
5 TraesCS5B01G191100 chr5D 93.717 748 24 8 4397 5128 301990118 301990858 0.000000e+00 1099
6 TraesCS5B01G191100 chr2D 88.172 651 68 6 135 777 152995402 152994753 0.000000e+00 767
7 TraesCS5B01G191100 chr2D 86.707 662 72 10 135 784 152896777 152896120 0.000000e+00 721
8 TraesCS5B01G191100 chr1A 87.424 660 68 12 135 783 154572592 154573247 0.000000e+00 745
9 TraesCS5B01G191100 chr1A 95.070 142 7 0 1 142 193245323 193245464 2.050000e-54 224
10 TraesCS5B01G191100 chr1D 87.289 653 71 9 135 777 144990453 144989803 0.000000e+00 736
11 TraesCS5B01G191100 chr2A 87.365 649 71 9 135 774 103825566 103826212 0.000000e+00 734
12 TraesCS5B01G191100 chr4D 87.289 653 68 10 135 777 396152674 396152027 0.000000e+00 732
13 TraesCS5B01G191100 chr7A 87.211 649 71 9 135 774 202534074 202533429 0.000000e+00 728
14 TraesCS5B01G191100 chr7A 94.521 146 7 1 1 145 539232799 539232654 2.050000e-54 224
15 TraesCS5B01G191100 chr7D 86.798 659 78 6 135 785 448676655 448675998 0.000000e+00 726
16 TraesCS5B01G191100 chr3D 86.657 667 73 13 121 777 384631929 384632589 0.000000e+00 725
17 TraesCS5B01G191100 chr2B 95.105 143 7 0 1 143 795706599 795706741 5.700000e-55 226
18 TraesCS5B01G191100 chr2B 90.000 170 13 3 1 170 361122379 361122214 3.430000e-52 217
19 TraesCS5B01G191100 chr7B 94.483 145 8 0 1 145 38918805 38918661 2.050000e-54 224
20 TraesCS5B01G191100 chr7B 94.483 145 8 0 1 145 733422004 733421860 2.050000e-54 224
21 TraesCS5B01G191100 chr4B 92.857 154 10 1 1 154 163832856 163833008 7.380000e-54 222
22 TraesCS5B01G191100 chr4B 92.763 152 11 0 1 152 537027018 537027169 2.650000e-53 220
23 TraesCS5B01G191100 chrUn 92.810 153 10 1 1 153 3216233 3216384 2.650000e-53 220


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G191100 chr5B 344934104 344939759 5655 False 10445 10445 100.0000 1 5656 1 chr5B.!!$F1 5655
1 TraesCS5B01G191100 chr5A 395868539 395873378 4839 True 2423 6421 92.4600 780 5613 3 chr5A.!!$R1 4833
2 TraesCS5B01G191100 chr5D 301986385 301990858 4473 False 3472 5845 94.9185 781 5128 2 chr5D.!!$F1 4347
3 TraesCS5B01G191100 chr2D 152994753 152995402 649 True 767 767 88.1720 135 777 1 chr2D.!!$R2 642
4 TraesCS5B01G191100 chr2D 152896120 152896777 657 True 721 721 86.7070 135 784 1 chr2D.!!$R1 649
5 TraesCS5B01G191100 chr1A 154572592 154573247 655 False 745 745 87.4240 135 783 1 chr1A.!!$F1 648
6 TraesCS5B01G191100 chr1D 144989803 144990453 650 True 736 736 87.2890 135 777 1 chr1D.!!$R1 642
7 TraesCS5B01G191100 chr2A 103825566 103826212 646 False 734 734 87.3650 135 774 1 chr2A.!!$F1 639
8 TraesCS5B01G191100 chr4D 396152027 396152674 647 True 732 732 87.2890 135 777 1 chr4D.!!$R1 642
9 TraesCS5B01G191100 chr7A 202533429 202534074 645 True 728 728 87.2110 135 774 1 chr7A.!!$R1 639
10 TraesCS5B01G191100 chr7D 448675998 448676655 657 True 726 726 86.7980 135 785 1 chr7D.!!$R1 650
11 TraesCS5B01G191100 chr3D 384631929 384632589 660 False 725 725 86.6570 121 777 1 chr3D.!!$F1 656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
455 467 0.034863 GTGAAAACTATGCCCCGGGA 60.035 55.000 26.32 1.94 0.00 5.14 F
615 633 0.040781 CCTTTACACGTTGGGTTGCG 60.041 55.000 0.00 0.00 0.00 4.85 F
649 668 1.673400 TGCGTGCATGTGTTGTTTACT 59.327 42.857 7.93 0.00 0.00 2.24 F
778 797 1.738365 CGCAGCTCACAAGTAGCAGAT 60.738 52.381 0.00 0.00 42.62 2.90 F
1312 1425 1.980772 CCCGACCTACTTCACCGGT 60.981 63.158 0.00 0.00 38.61 5.28 F
3032 3156 0.037877 ACTGAAGAGGCTGCTGCAAT 59.962 50.000 17.89 5.04 41.91 3.56 F
3843 3983 0.389025 CCTATTGGGCGGCATTTTCC 59.611 55.000 12.47 0.00 0.00 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1896 2015 0.729116 CAGCTGGCCATTCGTTAGTG 59.271 55.000 5.51 0.0 0.00 2.74 R
2497 2621 4.916983 AACTGAAATTAACAGCAGCACA 57.083 36.364 11.01 0.0 38.74 4.57 R
2588 2712 6.116126 AGGAGTAGCCAATTAATGACTTGAC 58.884 40.000 0.00 0.0 40.02 3.18 R
2916 3040 0.606673 GACAGTGTTCCCTGGCTTCC 60.607 60.000 0.00 0.0 37.51 3.46 R
3335 3475 0.038744 CCTCAGGTTCCACAGGCATT 59.961 55.000 0.00 0.0 0.00 3.56 R
4426 4672 1.225855 CCTTGTAAGCGAGTTGTGCA 58.774 50.000 0.00 0.0 33.85 4.57 R
5497 5799 0.036010 ATCACACTTTGGCCCTCTCG 60.036 55.000 0.00 0.0 0.00 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.296920 AGGAGGATAAGCGGCAACA 58.703 52.632 1.45 0.00 0.00 3.33
19 20 0.839946 AGGAGGATAAGCGGCAACAT 59.160 50.000 1.45 0.00 0.00 2.71
20 21 2.047061 AGGAGGATAAGCGGCAACATA 58.953 47.619 1.45 0.00 0.00 2.29
21 22 2.438021 AGGAGGATAAGCGGCAACATAA 59.562 45.455 1.45 0.00 0.00 1.90
22 23 3.118038 AGGAGGATAAGCGGCAACATAAA 60.118 43.478 1.45 0.00 0.00 1.40
23 24 3.821033 GGAGGATAAGCGGCAACATAAAT 59.179 43.478 1.45 0.00 0.00 1.40
24 25 5.001232 GGAGGATAAGCGGCAACATAAATA 58.999 41.667 1.45 0.00 0.00 1.40
25 26 5.648092 GGAGGATAAGCGGCAACATAAATAT 59.352 40.000 1.45 0.00 0.00 1.28
26 27 6.403636 GGAGGATAAGCGGCAACATAAATATG 60.404 42.308 1.45 0.00 39.55 1.78
27 28 6.237901 AGGATAAGCGGCAACATAAATATGA 58.762 36.000 1.45 0.00 37.15 2.15
28 29 6.886459 AGGATAAGCGGCAACATAAATATGAT 59.114 34.615 1.45 0.00 37.15 2.45
29 30 6.968904 GGATAAGCGGCAACATAAATATGATG 59.031 38.462 1.45 6.84 38.87 3.07
36 37 5.361135 CAACATAAATATGATGCCTCGCA 57.639 39.130 7.40 0.00 38.88 5.10
37 38 5.761003 CAACATAAATATGATGCCTCGCAA 58.239 37.500 7.40 0.00 38.41 4.85
38 39 6.207928 CAACATAAATATGATGCCTCGCAAA 58.792 36.000 7.40 0.00 38.41 3.68
39 40 6.389830 ACATAAATATGATGCCTCGCAAAA 57.610 33.333 7.40 0.00 38.41 2.44
40 41 6.804677 ACATAAATATGATGCCTCGCAAAAA 58.195 32.000 7.40 0.00 38.41 1.94
41 42 7.436118 ACATAAATATGATGCCTCGCAAAAAT 58.564 30.769 7.40 0.00 38.41 1.82
42 43 8.575589 ACATAAATATGATGCCTCGCAAAAATA 58.424 29.630 7.40 0.00 38.41 1.40
43 44 9.409312 CATAAATATGATGCCTCGCAAAAATAA 57.591 29.630 0.00 0.00 43.62 1.40
44 45 9.979578 ATAAATATGATGCCTCGCAAAAATAAA 57.020 25.926 0.00 0.00 43.62 1.40
45 46 7.935338 AATATGATGCCTCGCAAAAATAAAG 57.065 32.000 0.00 0.00 43.62 1.85
46 47 4.108699 TGATGCCTCGCAAAAATAAAGG 57.891 40.909 0.00 0.00 43.62 3.11
47 48 3.761218 TGATGCCTCGCAAAAATAAAGGA 59.239 39.130 0.00 0.00 43.62 3.36
48 49 3.848272 TGCCTCGCAAAAATAAAGGAG 57.152 42.857 0.00 0.00 34.76 3.69
49 50 3.417101 TGCCTCGCAAAAATAAAGGAGA 58.583 40.909 0.00 0.00 34.76 3.71
50 51 4.016444 TGCCTCGCAAAAATAAAGGAGAT 58.984 39.130 0.00 0.00 34.76 2.75
51 52 4.142403 TGCCTCGCAAAAATAAAGGAGATG 60.142 41.667 0.00 0.00 34.76 2.90
52 53 4.734695 GCCTCGCAAAAATAAAGGAGATGG 60.735 45.833 0.00 0.00 0.00 3.51
53 54 4.640201 CCTCGCAAAAATAAAGGAGATGGA 59.360 41.667 0.00 0.00 0.00 3.41
54 55 5.449177 CCTCGCAAAAATAAAGGAGATGGAC 60.449 44.000 0.00 0.00 0.00 4.02
55 56 4.398044 TCGCAAAAATAAAGGAGATGGACC 59.602 41.667 0.00 0.00 0.00 4.46
56 57 4.399303 CGCAAAAATAAAGGAGATGGACCT 59.601 41.667 0.00 0.00 39.69 3.85
57 58 5.588648 CGCAAAAATAAAGGAGATGGACCTA 59.411 40.000 0.00 0.00 36.67 3.08
58 59 6.458342 CGCAAAAATAAAGGAGATGGACCTAC 60.458 42.308 0.00 0.00 36.67 3.18
59 60 6.603599 GCAAAAATAAAGGAGATGGACCTACT 59.396 38.462 0.00 0.00 36.67 2.57
60 61 7.415653 GCAAAAATAAAGGAGATGGACCTACTG 60.416 40.741 0.00 0.00 36.67 2.74
61 62 6.893020 AAATAAAGGAGATGGACCTACTGT 57.107 37.500 0.00 0.00 36.67 3.55
62 63 5.878406 ATAAAGGAGATGGACCTACTGTG 57.122 43.478 0.00 0.00 36.67 3.66
63 64 2.166907 AGGAGATGGACCTACTGTGG 57.833 55.000 0.00 0.00 35.84 4.17
64 65 1.362932 AGGAGATGGACCTACTGTGGT 59.637 52.381 0.00 2.24 44.10 4.16
73 74 2.958818 ACCTACTGTGGTCTTGAGTGA 58.041 47.619 0.00 0.00 34.86 3.41
74 75 3.511477 ACCTACTGTGGTCTTGAGTGAT 58.489 45.455 0.00 0.00 34.86 3.06
75 76 3.259374 ACCTACTGTGGTCTTGAGTGATG 59.741 47.826 0.00 0.00 34.86 3.07
76 77 3.511540 CCTACTGTGGTCTTGAGTGATGA 59.488 47.826 0.00 0.00 0.00 2.92
77 78 4.161189 CCTACTGTGGTCTTGAGTGATGAT 59.839 45.833 0.00 0.00 0.00 2.45
78 79 4.630644 ACTGTGGTCTTGAGTGATGATT 57.369 40.909 0.00 0.00 0.00 2.57
79 80 4.321718 ACTGTGGTCTTGAGTGATGATTG 58.678 43.478 0.00 0.00 0.00 2.67
80 81 4.202398 ACTGTGGTCTTGAGTGATGATTGT 60.202 41.667 0.00 0.00 0.00 2.71
81 82 4.717877 TGTGGTCTTGAGTGATGATTGTT 58.282 39.130 0.00 0.00 0.00 2.83
82 83 4.516321 TGTGGTCTTGAGTGATGATTGTTG 59.484 41.667 0.00 0.00 0.00 3.33
83 84 4.756642 GTGGTCTTGAGTGATGATTGTTGA 59.243 41.667 0.00 0.00 0.00 3.18
84 85 4.999311 TGGTCTTGAGTGATGATTGTTGAG 59.001 41.667 0.00 0.00 0.00 3.02
85 86 4.999950 GGTCTTGAGTGATGATTGTTGAGT 59.000 41.667 0.00 0.00 0.00 3.41
86 87 5.471456 GGTCTTGAGTGATGATTGTTGAGTT 59.529 40.000 0.00 0.00 0.00 3.01
87 88 6.650807 GGTCTTGAGTGATGATTGTTGAGTTA 59.349 38.462 0.00 0.00 0.00 2.24
88 89 7.173218 GGTCTTGAGTGATGATTGTTGAGTTAA 59.827 37.037 0.00 0.00 0.00 2.01
89 90 8.226448 GTCTTGAGTGATGATTGTTGAGTTAAG 58.774 37.037 0.00 0.00 0.00 1.85
90 91 8.150296 TCTTGAGTGATGATTGTTGAGTTAAGA 58.850 33.333 0.00 0.00 0.00 2.10
91 92 7.895975 TGAGTGATGATTGTTGAGTTAAGAG 57.104 36.000 0.00 0.00 0.00 2.85
92 93 7.445121 TGAGTGATGATTGTTGAGTTAAGAGT 58.555 34.615 0.00 0.00 0.00 3.24
93 94 7.386025 TGAGTGATGATTGTTGAGTTAAGAGTG 59.614 37.037 0.00 0.00 0.00 3.51
94 95 7.220030 AGTGATGATTGTTGAGTTAAGAGTGT 58.780 34.615 0.00 0.00 0.00 3.55
95 96 7.172190 AGTGATGATTGTTGAGTTAAGAGTGTG 59.828 37.037 0.00 0.00 0.00 3.82
96 97 6.992123 TGATGATTGTTGAGTTAAGAGTGTGT 59.008 34.615 0.00 0.00 0.00 3.72
97 98 6.603237 TGATTGTTGAGTTAAGAGTGTGTG 57.397 37.500 0.00 0.00 0.00 3.82
98 99 6.112734 TGATTGTTGAGTTAAGAGTGTGTGT 58.887 36.000 0.00 0.00 0.00 3.72
99 100 6.597672 TGATTGTTGAGTTAAGAGTGTGTGTT 59.402 34.615 0.00 0.00 0.00 3.32
100 101 7.766738 TGATTGTTGAGTTAAGAGTGTGTGTTA 59.233 33.333 0.00 0.00 0.00 2.41
101 102 8.677148 ATTGTTGAGTTAAGAGTGTGTGTTAT 57.323 30.769 0.00 0.00 0.00 1.89
102 103 7.477144 TGTTGAGTTAAGAGTGTGTGTTATG 57.523 36.000 0.00 0.00 0.00 1.90
103 104 7.045416 TGTTGAGTTAAGAGTGTGTGTTATGT 58.955 34.615 0.00 0.00 0.00 2.29
104 105 7.551262 TGTTGAGTTAAGAGTGTGTGTTATGTT 59.449 33.333 0.00 0.00 0.00 2.71
105 106 8.395633 GTTGAGTTAAGAGTGTGTGTTATGTTT 58.604 33.333 0.00 0.00 0.00 2.83
106 107 8.500753 TGAGTTAAGAGTGTGTGTTATGTTTT 57.499 30.769 0.00 0.00 0.00 2.43
107 108 8.609176 TGAGTTAAGAGTGTGTGTTATGTTTTC 58.391 33.333 0.00 0.00 0.00 2.29
108 109 7.927048 AGTTAAGAGTGTGTGTTATGTTTTCC 58.073 34.615 0.00 0.00 0.00 3.13
109 110 5.767816 AAGAGTGTGTGTTATGTTTTCCC 57.232 39.130 0.00 0.00 0.00 3.97
110 111 5.048846 AGAGTGTGTGTTATGTTTTCCCT 57.951 39.130 0.00 0.00 0.00 4.20
111 112 5.063880 AGAGTGTGTGTTATGTTTTCCCTC 58.936 41.667 0.00 0.00 0.00 4.30
112 113 4.142038 AGTGTGTGTTATGTTTTCCCTCC 58.858 43.478 0.00 0.00 0.00 4.30
113 114 3.254903 GTGTGTGTTATGTTTTCCCTCCC 59.745 47.826 0.00 0.00 0.00 4.30
114 115 3.117474 TGTGTGTTATGTTTTCCCTCCCA 60.117 43.478 0.00 0.00 0.00 4.37
115 116 4.086457 GTGTGTTATGTTTTCCCTCCCAT 58.914 43.478 0.00 0.00 0.00 4.00
116 117 4.526650 GTGTGTTATGTTTTCCCTCCCATT 59.473 41.667 0.00 0.00 0.00 3.16
117 118 4.526262 TGTGTTATGTTTTCCCTCCCATTG 59.474 41.667 0.00 0.00 0.00 2.82
118 119 3.513515 TGTTATGTTTTCCCTCCCATTGC 59.486 43.478 0.00 0.00 0.00 3.56
119 120 2.323999 ATGTTTTCCCTCCCATTGCA 57.676 45.000 0.00 0.00 0.00 4.08
120 121 2.094100 TGTTTTCCCTCCCATTGCAA 57.906 45.000 0.00 0.00 0.00 4.08
121 122 1.691434 TGTTTTCCCTCCCATTGCAAC 59.309 47.619 0.00 0.00 0.00 4.17
122 123 0.965439 TTTTCCCTCCCATTGCAACG 59.035 50.000 0.00 0.00 0.00 4.10
123 124 1.531739 TTTCCCTCCCATTGCAACGC 61.532 55.000 0.00 0.00 0.00 4.84
124 125 2.676121 CCCTCCCATTGCAACGCA 60.676 61.111 0.00 0.00 36.47 5.24
125 126 2.568090 CCTCCCATTGCAACGCAC 59.432 61.111 0.00 0.00 38.71 5.34
126 127 2.176546 CTCCCATTGCAACGCACG 59.823 61.111 0.00 0.00 38.71 5.34
127 128 2.281139 TCCCATTGCAACGCACGA 60.281 55.556 0.00 0.00 38.71 4.35
128 129 1.851021 CTCCCATTGCAACGCACGAA 61.851 55.000 0.00 0.00 38.71 3.85
129 130 1.729131 CCCATTGCAACGCACGAAC 60.729 57.895 0.00 0.00 38.71 3.95
130 131 1.282570 CCATTGCAACGCACGAACT 59.717 52.632 0.00 0.00 38.71 3.01
131 132 0.725784 CCATTGCAACGCACGAACTC 60.726 55.000 0.00 0.00 38.71 3.01
132 133 0.235665 CATTGCAACGCACGAACTCT 59.764 50.000 0.00 0.00 38.71 3.24
133 134 0.944386 ATTGCAACGCACGAACTCTT 59.056 45.000 0.00 0.00 38.71 2.85
134 135 0.730265 TTGCAACGCACGAACTCTTT 59.270 45.000 0.00 0.00 38.71 2.52
135 136 0.730265 TGCAACGCACGAACTCTTTT 59.270 45.000 0.00 0.00 31.71 2.27
136 137 1.112459 GCAACGCACGAACTCTTTTG 58.888 50.000 0.00 0.00 0.00 2.44
137 138 1.112459 CAACGCACGAACTCTTTTGC 58.888 50.000 0.00 0.00 0.00 3.68
138 139 1.014352 AACGCACGAACTCTTTTGCT 58.986 45.000 0.00 0.00 32.56 3.91
139 140 1.860676 ACGCACGAACTCTTTTGCTA 58.139 45.000 0.00 0.00 32.56 3.49
140 141 1.792949 ACGCACGAACTCTTTTGCTAG 59.207 47.619 0.00 0.00 32.56 3.42
151 152 7.333672 CGAACTCTTTTGCTAGTTAAGGGTAAT 59.666 37.037 6.58 0.00 36.10 1.89
158 159 7.408756 TTGCTAGTTAAGGGTAATAAGACGA 57.591 36.000 0.00 0.00 0.00 4.20
159 160 7.408756 TGCTAGTTAAGGGTAATAAGACGAA 57.591 36.000 0.00 0.00 0.00 3.85
214 218 7.478322 ACATCATGTCATCTTTCTTAATGCAC 58.522 34.615 0.00 0.00 0.00 4.57
242 246 8.504005 ACTCTGTTTTTCCATGAACTTAATACG 58.496 33.333 0.00 0.00 0.00 3.06
253 257 9.639601 CCATGAACTTAATACGCTAGATGAATA 57.360 33.333 0.00 0.00 0.00 1.75
264 268 5.568685 GCTAGATGAATACTGGATAGCGA 57.431 43.478 0.00 0.00 0.00 4.93
354 358 6.544931 CCTATATACATGATCATTGCCTTGGG 59.455 42.308 5.16 0.85 0.00 4.12
368 372 4.787551 TGCCTTGGGTATCGTCATAATTT 58.212 39.130 0.00 0.00 0.00 1.82
452 463 1.094785 CCAGTGAAAACTATGCCCCG 58.905 55.000 0.00 0.00 0.00 5.73
455 467 0.034863 GTGAAAACTATGCCCCGGGA 60.035 55.000 26.32 1.94 0.00 5.14
505 518 9.178758 ACCAAAAATACCTTGTTGCAATTTTTA 57.821 25.926 13.93 0.34 37.54 1.52
615 633 0.040781 CCTTTACACGTTGGGTTGCG 60.041 55.000 0.00 0.00 0.00 4.85
631 650 3.181575 GGTTGCGAGTATTTGTTGTTTGC 59.818 43.478 0.00 0.00 0.00 3.68
649 668 1.673400 TGCGTGCATGTGTTGTTTACT 59.327 42.857 7.93 0.00 0.00 2.24
651 670 3.112580 GCGTGCATGTGTTGTTTACTTT 58.887 40.909 7.93 0.00 0.00 2.66
662 681 5.631512 GTGTTGTTTACTTTGTGTTGCTTGA 59.368 36.000 0.00 0.00 0.00 3.02
668 687 6.942532 TTACTTTGTGTTGCTTGATTCTCT 57.057 33.333 0.00 0.00 0.00 3.10
688 707 7.496346 TCTCTTACTGGATTGATAACCTTGT 57.504 36.000 0.00 0.00 0.00 3.16
739 758 5.897250 TCTACTGTACTGCATTATCCCTTCA 59.103 40.000 0.00 0.00 0.00 3.02
741 760 6.006275 ACTGTACTGCATTATCCCTTCATT 57.994 37.500 0.00 0.00 0.00 2.57
745 764 5.859205 ACTGCATTATCCCTTCATTTTCC 57.141 39.130 0.00 0.00 0.00 3.13
746 765 5.271598 ACTGCATTATCCCTTCATTTTCCA 58.728 37.500 0.00 0.00 0.00 3.53
753 772 9.895138 CATTATCCCTTCATTTTCCAAGAAATT 57.105 29.630 0.00 0.00 0.00 1.82
778 797 1.738365 CGCAGCTCACAAGTAGCAGAT 60.738 52.381 0.00 0.00 42.62 2.90
958 1071 3.367910 GCCACAGATCGAGAAGTCTCTTT 60.368 47.826 6.75 0.00 40.75 2.52
961 1074 4.157656 CACAGATCGAGAAGTCTCTTTCCT 59.842 45.833 6.75 0.00 40.75 3.36
971 1084 2.040606 TCTTTCCTCCCCCTCCGG 59.959 66.667 0.00 0.00 0.00 5.14
1151 1264 5.562506 TTCGTCTTCTCATTCGTGTATCT 57.437 39.130 0.00 0.00 0.00 1.98
1312 1425 1.980772 CCCGACCTACTTCACCGGT 60.981 63.158 0.00 0.00 38.61 5.28
1381 1494 2.513897 CGAGGATTCAACCCCGGC 60.514 66.667 0.00 0.00 0.00 6.13
1462 1575 2.690026 CGGTCTCTCCCTCCCTCATTTA 60.690 54.545 0.00 0.00 0.00 1.40
1522 1635 6.299805 AGAGTCCTGTTCATTTGCTACATA 57.700 37.500 0.00 0.00 0.00 2.29
1527 1640 6.473455 GTCCTGTTCATTTGCTACATATTTGC 59.527 38.462 0.00 0.00 0.00 3.68
1562 1681 5.124297 CCATTTCATGTGACAATGTGAGCTA 59.876 40.000 0.00 0.00 0.00 3.32
1896 2015 3.995199 TCCCTTGACGATTATGAGATGC 58.005 45.455 0.00 0.00 0.00 3.91
2119 2238 9.464714 GTAAACGTTGATATCATACACTGAGAT 57.535 33.333 6.17 0.00 38.51 2.75
2197 2317 4.819769 AGTGTGCCAAATTCGCAAAATAT 58.180 34.783 1.98 0.00 38.13 1.28
2347 2467 7.361286 GGAAACAAAGAGAAGCAGGTATACTTG 60.361 40.741 10.51 10.51 0.00 3.16
2406 2526 9.845740 TTTATGTGTATACTTCTGTTATGCCAT 57.154 29.630 4.17 0.00 0.00 4.40
2416 2536 6.886459 ACTTCTGTTATGCCATTACATTCTGT 59.114 34.615 0.00 0.00 0.00 3.41
2442 2562 7.013464 TCCTTTATTGCTTTCACGGTTTAAGAA 59.987 33.333 3.81 0.00 0.00 2.52
2454 2574 5.240844 CACGGTTTAAGAATTTTCCTCCTGT 59.759 40.000 0.00 0.00 0.00 4.00
2588 2712 7.252708 TGCTGCATTGATAATCTGTTTAACTG 58.747 34.615 0.00 0.00 0.00 3.16
2916 3040 2.089201 TGCAACTTCAGGCATGATGAG 58.911 47.619 19.58 9.67 34.73 2.90
3032 3156 0.037877 ACTGAAGAGGCTGCTGCAAT 59.962 50.000 17.89 5.04 41.91 3.56
3072 3212 3.008485 GGTGAGAGGAGTTGTCCAAATCT 59.992 47.826 7.33 0.00 46.80 2.40
3073 3213 4.223032 GGTGAGAGGAGTTGTCCAAATCTA 59.777 45.833 7.33 0.00 46.80 1.98
3074 3214 5.104735 GGTGAGAGGAGTTGTCCAAATCTAT 60.105 44.000 7.33 0.00 46.80 1.98
3075 3215 6.045955 GTGAGAGGAGTTGTCCAAATCTATC 58.954 44.000 7.33 6.36 46.80 2.08
3076 3216 5.960811 TGAGAGGAGTTGTCCAAATCTATCT 59.039 40.000 12.25 12.25 46.80 1.98
3077 3217 7.068839 GTGAGAGGAGTTGTCCAAATCTATCTA 59.931 40.741 7.33 0.77 46.80 1.98
3078 3218 7.786943 TGAGAGGAGTTGTCCAAATCTATCTAT 59.213 37.037 7.33 0.00 46.80 1.98
3079 3219 8.189119 AGAGGAGTTGTCCAAATCTATCTATC 57.811 38.462 7.33 0.00 46.80 2.08
3080 3220 8.010105 AGAGGAGTTGTCCAAATCTATCTATCT 58.990 37.037 7.33 0.00 46.80 1.98
3081 3221 8.189119 AGGAGTTGTCCAAATCTATCTATCTC 57.811 38.462 7.33 0.00 46.80 2.75
3082 3222 8.010105 AGGAGTTGTCCAAATCTATCTATCTCT 58.990 37.037 7.33 0.00 46.80 3.10
3083 3223 8.303876 GGAGTTGTCCAAATCTATCTATCTCTC 58.696 40.741 7.33 0.00 43.31 3.20
3084 3224 9.077885 GAGTTGTCCAAATCTATCTATCTCTCT 57.922 37.037 0.54 0.00 33.14 3.10
3085 3225 9.077885 AGTTGTCCAAATCTATCTATCTCTCTC 57.922 37.037 0.00 0.00 0.00 3.20
3086 3226 9.077885 GTTGTCCAAATCTATCTATCTCTCTCT 57.922 37.037 0.00 0.00 0.00 3.10
3087 3227 8.862325 TGTCCAAATCTATCTATCTCTCTCTC 57.138 38.462 0.00 0.00 0.00 3.20
3088 3228 8.668653 TGTCCAAATCTATCTATCTCTCTCTCT 58.331 37.037 0.00 0.00 0.00 3.10
3089 3229 9.167311 GTCCAAATCTATCTATCTCTCTCTCTC 57.833 40.741 0.00 0.00 0.00 3.20
3090 3230 9.116080 TCCAAATCTATCTATCTCTCTCTCTCT 57.884 37.037 0.00 0.00 0.00 3.10
3091 3231 9.388506 CCAAATCTATCTATCTCTCTCTCTCTC 57.611 40.741 0.00 0.00 0.00 3.20
3132 3272 5.587443 TCTCATGCATTCAGTAATCAGTTGG 59.413 40.000 0.00 0.00 0.00 3.77
3245 3385 8.008513 AGTCACATCTTGTTATTAGTATCGGT 57.991 34.615 0.00 0.00 0.00 4.69
3299 3439 1.806542 CTTGTTCCGGACCATGTTCTG 59.193 52.381 1.83 0.00 0.00 3.02
3335 3475 5.482526 TGAACACTTCCCTACTACAATAGCA 59.517 40.000 0.00 0.00 0.00 3.49
3422 3562 3.522553 ACGAGGAAAAGCAGCAGTATAC 58.477 45.455 0.00 0.00 0.00 1.47
3654 3794 1.228094 TTGTGAATCCAGGTGCGCA 60.228 52.632 5.66 5.66 0.00 6.09
3766 3906 4.980573 TGCATTGTTCTGGTTACCTACTT 58.019 39.130 2.07 0.00 0.00 2.24
3843 3983 0.389025 CCTATTGGGCGGCATTTTCC 59.611 55.000 12.47 0.00 0.00 3.13
3923 4063 8.786826 TCGAATTGTAAACATAGGTTGATCTT 57.213 30.769 0.00 0.00 37.30 2.40
3946 4086 4.040829 TGGTCTCATGTCAAGTCATGTTCT 59.959 41.667 7.07 0.00 43.70 3.01
4014 4154 4.459390 TGGATTGCAAATCATTGTCCTG 57.541 40.909 1.71 0.00 38.85 3.86
4242 4383 3.309954 GCTTGTTTTATGTAGAGCTCCCG 59.690 47.826 10.93 0.00 0.00 5.14
4389 4563 5.470098 TCAGCAACCTAACTTTGTCAATCTC 59.530 40.000 0.00 0.00 0.00 2.75
4438 4684 2.105006 ATCTCAATGCACAACTCGCT 57.895 45.000 0.00 0.00 0.00 4.93
4447 4693 1.225855 CACAACTCGCTTACAAGGCA 58.774 50.000 0.00 0.00 0.00 4.75
4512 4758 2.091852 GCTGCAGCTGAGTCTTTACT 57.908 50.000 31.33 0.00 37.00 2.24
4519 4765 4.387256 GCAGCTGAGTCTTTACTTGTACTG 59.613 45.833 20.43 0.00 35.56 2.74
4696 4942 5.071519 CCTATCTCTTGGAGGTTGATGATGT 59.928 44.000 0.00 0.00 0.00 3.06
4724 4970 5.220548 CCTGATGTTCATGACTTCTTAAGCG 60.221 44.000 0.00 0.00 34.44 4.68
4825 5071 1.198408 TGTAGCTGACCGTTACGAGTG 59.802 52.381 6.24 0.00 32.56 3.51
4889 5135 7.546358 TGACAGTCACAAGAAATTTTCATTGT 58.454 30.769 11.53 13.82 34.01 2.71
5045 5306 1.940883 TACGACGCACCCTCCATCAC 61.941 60.000 0.00 0.00 0.00 3.06
5046 5307 2.662596 GACGCACCCTCCATCACA 59.337 61.111 0.00 0.00 0.00 3.58
5069 5363 6.368516 ACAATCCGGCTTTTGTCATAAATTTG 59.631 34.615 10.35 0.00 30.43 2.32
5070 5364 5.461032 TCCGGCTTTTGTCATAAATTTGT 57.539 34.783 0.00 0.00 0.00 2.83
5071 5365 5.226396 TCCGGCTTTTGTCATAAATTTGTG 58.774 37.500 8.53 8.53 0.00 3.33
5072 5366 5.010112 TCCGGCTTTTGTCATAAATTTGTGA 59.990 36.000 13.03 13.03 0.00 3.58
5073 5367 5.868801 CCGGCTTTTGTCATAAATTTGTGAT 59.131 36.000 18.96 0.00 30.97 3.06
5074 5368 7.032580 CCGGCTTTTGTCATAAATTTGTGATA 58.967 34.615 18.96 14.33 30.97 2.15
5075 5369 7.220683 CCGGCTTTTGTCATAAATTTGTGATAG 59.779 37.037 18.96 14.44 30.97 2.08
5076 5370 7.967854 CGGCTTTTGTCATAAATTTGTGATAGA 59.032 33.333 18.96 10.20 30.97 1.98
5077 5371 9.807649 GGCTTTTGTCATAAATTTGTGATAGAT 57.192 29.630 18.96 0.00 30.97 1.98
5106 5400 8.854614 TTTTTGTGGGGGATAAATTTGTAATG 57.145 30.769 0.00 0.00 0.00 1.90
5149 5443 7.168219 AGAAACTGCTTATACATGTTGAAGGA 58.832 34.615 2.30 8.47 0.00 3.36
5191 5485 6.353255 GGAGTGGGAACTAATACCATTAACCA 60.353 42.308 0.00 0.00 36.54 3.67
5192 5486 7.034967 AGTGGGAACTAATACCATTAACCAA 57.965 36.000 0.00 0.00 36.54 3.67
5196 5490 7.558444 TGGGAACTAATACCATTAACCAATGTC 59.442 37.037 0.00 0.00 40.04 3.06
5254 5548 7.395190 TGGAAATGTTTACATGAGATCCTTG 57.605 36.000 0.00 0.00 36.56 3.61
5262 5556 2.753452 ACATGAGATCCTTGCTTGCTTG 59.247 45.455 0.00 0.00 0.00 4.01
5326 5621 3.387962 AGCCCTTCATAGGAGACATCAA 58.612 45.455 0.00 0.00 45.05 2.57
5333 5628 3.144506 CATAGGAGACATCAATGGCCAC 58.855 50.000 8.16 0.00 36.08 5.01
5338 5633 1.656818 GACATCAATGGCCACGTGGG 61.657 60.000 34.58 18.34 40.85 4.61
5339 5634 1.678635 CATCAATGGCCACGTGGGT 60.679 57.895 34.58 1.42 39.65 4.51
5340 5635 0.393673 CATCAATGGCCACGTGGGTA 60.394 55.000 34.58 10.42 39.65 3.69
5341 5636 0.550914 ATCAATGGCCACGTGGGTAT 59.449 50.000 34.58 12.06 39.65 2.73
5353 5648 4.765339 CCACGTGGGTATGTCTATCATAGA 59.235 45.833 27.57 0.00 39.36 1.98
5361 5656 8.588472 TGGGTATGTCTATCATAGATTGTGAAG 58.412 37.037 0.00 0.00 39.36 3.02
5362 5657 8.037758 GGGTATGTCTATCATAGATTGTGAAGG 58.962 40.741 0.00 0.00 39.36 3.46
5366 5661 6.162777 GTCTATCATAGATTGTGAAGGGAGC 58.837 44.000 0.00 0.00 37.13 4.70
5378 5673 1.556911 GAAGGGAGCAGACCTCAATGA 59.443 52.381 0.00 0.00 42.62 2.57
5389 5691 1.676968 CTCAATGACCACGTGGGGA 59.323 57.895 36.47 23.28 42.91 4.81
5391 5693 0.695924 TCAATGACCACGTGGGGAAT 59.304 50.000 36.47 23.35 42.91 3.01
5403 5705 3.578716 ACGTGGGGAATGTCTATCATAGG 59.421 47.826 0.00 0.00 35.48 2.57
5417 5719 2.802719 TCATAGGTTTTGAAGGGGTGC 58.197 47.619 0.00 0.00 0.00 5.01
5426 5728 1.214305 TGAAGGGGTGCATAGGGCTT 61.214 55.000 0.00 0.00 45.15 4.35
5429 5731 1.214305 AGGGGTGCATAGGGCTTTGA 61.214 55.000 0.00 0.00 45.15 2.69
5433 5735 3.500343 GGGTGCATAGGGCTTTGATTAT 58.500 45.455 0.00 0.00 45.15 1.28
5435 5737 3.305608 GGTGCATAGGGCTTTGATTATGC 60.306 47.826 8.05 8.05 45.28 3.14
5436 5738 2.892852 TGCATAGGGCTTTGATTATGCC 59.107 45.455 11.46 0.00 44.76 4.40
5455 5757 1.280133 CCAGCATGAACCAAGGAGAGA 59.720 52.381 0.00 0.00 39.69 3.10
5461 5763 1.270305 TGAACCAAGGAGAGAACGCTG 60.270 52.381 0.00 0.00 0.00 5.18
5467 5769 3.067106 CAAGGAGAGAACGCTGCTAAAA 58.933 45.455 0.00 0.00 35.36 1.52
5468 5770 2.689646 AGGAGAGAACGCTGCTAAAAC 58.310 47.619 0.00 0.00 34.60 2.43
5469 5771 2.300437 AGGAGAGAACGCTGCTAAAACT 59.700 45.455 0.00 0.00 34.60 2.66
5477 5779 1.126846 CGCTGCTAAAACTTCTCACCG 59.873 52.381 0.00 0.00 0.00 4.94
5490 5792 6.619801 ACTTCTCACCGGCATATTAATTTC 57.380 37.500 0.00 0.00 0.00 2.17
5494 5796 7.667043 TCTCACCGGCATATTAATTTCATAC 57.333 36.000 0.00 0.00 0.00 2.39
5496 5798 7.717436 TCTCACCGGCATATTAATTTCATACAA 59.283 33.333 0.00 0.00 0.00 2.41
5497 5799 7.644490 TCACCGGCATATTAATTTCATACAAC 58.356 34.615 0.00 0.00 0.00 3.32
5502 5804 7.952101 CGGCATATTAATTTCATACAACGAGAG 59.048 37.037 0.00 0.00 0.00 3.20
5517 5819 1.207089 CGAGAGGGCCAAAGTGTGATA 59.793 52.381 6.18 0.00 0.00 2.15
5535 5837 3.118261 TGATAGGATGCTTGGTTGAGACC 60.118 47.826 0.00 0.00 46.71 3.85
5586 5889 0.596082 CGGGTTTTGATGTGGACACC 59.404 55.000 0.00 0.00 0.00 4.16
5591 5894 0.036164 TTTGATGTGGACACCCTCCG 59.964 55.000 0.00 0.00 43.03 4.63
5613 5916 0.741221 GGACGGTTGGAGCAGTCATC 60.741 60.000 0.00 0.00 35.49 2.92
5614 5917 0.037326 GACGGTTGGAGCAGTCATCA 60.037 55.000 0.00 0.00 34.09 3.07
5615 5918 0.615331 ACGGTTGGAGCAGTCATCAT 59.385 50.000 0.00 0.00 0.00 2.45
5616 5919 1.012086 CGGTTGGAGCAGTCATCATG 58.988 55.000 0.00 0.00 0.00 3.07
5617 5920 1.386533 GGTTGGAGCAGTCATCATGG 58.613 55.000 0.00 0.00 0.00 3.66
5618 5921 1.065199 GGTTGGAGCAGTCATCATGGA 60.065 52.381 0.00 0.00 0.00 3.41
5619 5922 2.618816 GGTTGGAGCAGTCATCATGGAA 60.619 50.000 0.00 0.00 0.00 3.53
5620 5923 3.084039 GTTGGAGCAGTCATCATGGAAA 58.916 45.455 0.00 0.00 0.00 3.13
5621 5924 2.995283 TGGAGCAGTCATCATGGAAAG 58.005 47.619 0.00 0.00 0.00 2.62
5622 5925 2.306805 TGGAGCAGTCATCATGGAAAGT 59.693 45.455 0.00 0.00 0.00 2.66
5623 5926 3.245016 TGGAGCAGTCATCATGGAAAGTT 60.245 43.478 0.00 0.00 0.00 2.66
5624 5927 3.376546 GGAGCAGTCATCATGGAAAGTTC 59.623 47.826 0.00 0.00 0.00 3.01
5625 5928 4.005650 GAGCAGTCATCATGGAAAGTTCA 58.994 43.478 0.00 0.00 0.00 3.18
5626 5929 4.597004 AGCAGTCATCATGGAAAGTTCAT 58.403 39.130 0.00 0.00 0.00 2.57
5627 5930 5.014858 AGCAGTCATCATGGAAAGTTCATT 58.985 37.500 0.00 0.00 0.00 2.57
5628 5931 6.182627 AGCAGTCATCATGGAAAGTTCATTA 58.817 36.000 0.00 0.00 0.00 1.90
5629 5932 6.094603 AGCAGTCATCATGGAAAGTTCATTAC 59.905 38.462 0.00 0.00 0.00 1.89
5630 5933 6.127925 GCAGTCATCATGGAAAGTTCATTACA 60.128 38.462 0.00 0.00 0.00 2.41
5631 5934 7.575532 GCAGTCATCATGGAAAGTTCATTACAA 60.576 37.037 0.00 0.00 0.00 2.41
5632 5935 7.752239 CAGTCATCATGGAAAGTTCATTACAAC 59.248 37.037 0.00 0.00 0.00 3.32
5633 5936 7.029563 GTCATCATGGAAAGTTCATTACAACC 58.970 38.462 0.00 0.00 0.00 3.77
5634 5937 5.621197 TCATGGAAAGTTCATTACAACCG 57.379 39.130 0.00 0.00 0.00 4.44
5635 5938 5.067273 TCATGGAAAGTTCATTACAACCGT 58.933 37.500 0.00 0.00 0.00 4.83
5636 5939 5.180492 TCATGGAAAGTTCATTACAACCGTC 59.820 40.000 0.00 0.00 0.00 4.79
5637 5940 4.452825 TGGAAAGTTCATTACAACCGTCA 58.547 39.130 0.00 0.00 0.00 4.35
5638 5941 4.882427 TGGAAAGTTCATTACAACCGTCAA 59.118 37.500 0.00 0.00 0.00 3.18
5639 5942 5.533154 TGGAAAGTTCATTACAACCGTCAAT 59.467 36.000 0.00 0.00 0.00 2.57
5640 5943 5.856455 GGAAAGTTCATTACAACCGTCAATG 59.144 40.000 0.00 0.00 0.00 2.82
5641 5944 6.293735 GGAAAGTTCATTACAACCGTCAATGA 60.294 38.462 0.00 0.00 37.00 2.57
5642 5945 6.627395 AAGTTCATTACAACCGTCAATGAA 57.373 33.333 5.17 5.17 43.07 2.57
5643 5946 6.627395 AGTTCATTACAACCGTCAATGAAA 57.373 33.333 9.76 0.00 45.34 2.69
5644 5947 7.033530 AGTTCATTACAACCGTCAATGAAAA 57.966 32.000 9.76 0.00 45.34 2.29
5645 5948 7.138736 AGTTCATTACAACCGTCAATGAAAAG 58.861 34.615 9.76 0.00 45.34 2.27
5646 5949 6.869315 TCATTACAACCGTCAATGAAAAGA 57.131 33.333 0.00 0.00 36.12 2.52
5647 5950 7.447374 TCATTACAACCGTCAATGAAAAGAT 57.553 32.000 0.00 0.00 36.12 2.40
5648 5951 7.881142 TCATTACAACCGTCAATGAAAAGATT 58.119 30.769 0.00 0.00 36.12 2.40
5649 5952 7.807433 TCATTACAACCGTCAATGAAAAGATTG 59.193 33.333 0.00 0.00 36.12 2.67
5650 5953 4.870363 ACAACCGTCAATGAAAAGATTGG 58.130 39.130 0.00 0.00 34.58 3.16
5651 5954 4.340950 ACAACCGTCAATGAAAAGATTGGT 59.659 37.500 0.00 0.00 34.58 3.67
5652 5955 5.533154 ACAACCGTCAATGAAAAGATTGGTA 59.467 36.000 0.00 0.00 34.58 3.25
5653 5956 5.880054 ACCGTCAATGAAAAGATTGGTAG 57.120 39.130 0.00 0.00 34.58 3.18
5654 5957 5.313712 ACCGTCAATGAAAAGATTGGTAGT 58.686 37.500 0.00 0.00 34.58 2.73
5655 5958 5.768164 ACCGTCAATGAAAAGATTGGTAGTT 59.232 36.000 0.00 0.00 34.58 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.543777 TATGTTGCCGCTTATCCTCC 57.456 50.000 0.00 0.00 0.00 4.30
3 4 6.237901 TCATATTTATGTTGCCGCTTATCCT 58.762 36.000 0.00 0.00 35.26 3.24
4 5 6.494893 TCATATTTATGTTGCCGCTTATCC 57.505 37.500 0.00 0.00 35.26 2.59
5 6 6.470235 GCATCATATTTATGTTGCCGCTTATC 59.530 38.462 17.19 0.00 46.20 1.75
6 7 6.324819 GCATCATATTTATGTTGCCGCTTAT 58.675 36.000 17.19 0.00 46.20 1.73
9 10 4.164822 GCATCATATTTATGTTGCCGCT 57.835 40.909 17.19 0.00 46.20 5.52
14 15 5.361135 TGCGAGGCATCATATTTATGTTG 57.639 39.130 0.00 4.85 36.79 3.33
15 16 6.389830 TTTGCGAGGCATCATATTTATGTT 57.610 33.333 0.00 0.00 38.76 2.71
16 17 6.389830 TTTTGCGAGGCATCATATTTATGT 57.610 33.333 0.00 0.00 38.76 2.29
17 18 7.878477 ATTTTTGCGAGGCATCATATTTATG 57.122 32.000 0.00 0.00 38.76 1.90
18 19 9.979578 TTTATTTTTGCGAGGCATCATATTTAT 57.020 25.926 0.00 0.00 38.76 1.40
19 20 9.462174 CTTTATTTTTGCGAGGCATCATATTTA 57.538 29.630 0.00 0.00 38.76 1.40
20 21 7.439056 CCTTTATTTTTGCGAGGCATCATATTT 59.561 33.333 0.00 0.00 38.76 1.40
21 22 6.925165 CCTTTATTTTTGCGAGGCATCATATT 59.075 34.615 0.00 0.00 38.76 1.28
22 23 6.265196 TCCTTTATTTTTGCGAGGCATCATAT 59.735 34.615 0.00 0.00 38.76 1.78
23 24 5.592282 TCCTTTATTTTTGCGAGGCATCATA 59.408 36.000 0.00 0.00 38.76 2.15
24 25 4.402155 TCCTTTATTTTTGCGAGGCATCAT 59.598 37.500 0.00 0.00 38.76 2.45
25 26 3.761218 TCCTTTATTTTTGCGAGGCATCA 59.239 39.130 0.00 0.00 38.76 3.07
26 27 4.096382 TCTCCTTTATTTTTGCGAGGCATC 59.904 41.667 0.00 0.00 38.76 3.91
27 28 4.016444 TCTCCTTTATTTTTGCGAGGCAT 58.984 39.130 0.00 0.00 38.76 4.40
28 29 3.417101 TCTCCTTTATTTTTGCGAGGCA 58.583 40.909 0.00 0.00 36.47 4.75
29 30 4.354587 CATCTCCTTTATTTTTGCGAGGC 58.645 43.478 0.00 0.00 0.00 4.70
30 31 4.640201 TCCATCTCCTTTATTTTTGCGAGG 59.360 41.667 0.00 0.00 0.00 4.63
31 32 5.449177 GGTCCATCTCCTTTATTTTTGCGAG 60.449 44.000 0.00 0.00 0.00 5.03
32 33 4.398044 GGTCCATCTCCTTTATTTTTGCGA 59.602 41.667 0.00 0.00 0.00 5.10
33 34 4.399303 AGGTCCATCTCCTTTATTTTTGCG 59.601 41.667 0.00 0.00 30.18 4.85
34 35 5.921962 AGGTCCATCTCCTTTATTTTTGC 57.078 39.130 0.00 0.00 30.18 3.68
35 36 7.611855 ACAGTAGGTCCATCTCCTTTATTTTTG 59.388 37.037 0.00 0.00 36.60 2.44
36 37 7.611855 CACAGTAGGTCCATCTCCTTTATTTTT 59.388 37.037 0.00 0.00 36.60 1.94
37 38 7.112779 CACAGTAGGTCCATCTCCTTTATTTT 58.887 38.462 0.00 0.00 36.60 1.82
38 39 6.353082 CCACAGTAGGTCCATCTCCTTTATTT 60.353 42.308 0.00 0.00 36.60 1.40
39 40 5.131142 CCACAGTAGGTCCATCTCCTTTATT 59.869 44.000 0.00 0.00 36.60 1.40
40 41 4.656112 CCACAGTAGGTCCATCTCCTTTAT 59.344 45.833 0.00 0.00 36.60 1.40
41 42 4.030913 CCACAGTAGGTCCATCTCCTTTA 58.969 47.826 0.00 0.00 36.60 1.85
42 43 2.840651 CCACAGTAGGTCCATCTCCTTT 59.159 50.000 0.00 0.00 36.60 3.11
43 44 2.225650 ACCACAGTAGGTCCATCTCCTT 60.226 50.000 0.00 0.00 37.28 3.36
44 45 1.362932 ACCACAGTAGGTCCATCTCCT 59.637 52.381 0.00 0.00 37.28 3.69
45 46 1.867363 ACCACAGTAGGTCCATCTCC 58.133 55.000 0.00 0.00 37.28 3.71
53 54 2.958818 TCACTCAAGACCACAGTAGGT 58.041 47.619 0.00 0.00 46.82 3.08
54 55 3.511540 TCATCACTCAAGACCACAGTAGG 59.488 47.826 0.00 0.00 0.00 3.18
55 56 4.790765 TCATCACTCAAGACCACAGTAG 57.209 45.455 0.00 0.00 0.00 2.57
56 57 5.012046 ACAATCATCACTCAAGACCACAGTA 59.988 40.000 0.00 0.00 0.00 2.74
57 58 4.202398 ACAATCATCACTCAAGACCACAGT 60.202 41.667 0.00 0.00 0.00 3.55
58 59 4.321718 ACAATCATCACTCAAGACCACAG 58.678 43.478 0.00 0.00 0.00 3.66
59 60 4.356405 ACAATCATCACTCAAGACCACA 57.644 40.909 0.00 0.00 0.00 4.17
60 61 4.756642 TCAACAATCATCACTCAAGACCAC 59.243 41.667 0.00 0.00 0.00 4.16
61 62 4.971939 TCAACAATCATCACTCAAGACCA 58.028 39.130 0.00 0.00 0.00 4.02
62 63 4.999950 ACTCAACAATCATCACTCAAGACC 59.000 41.667 0.00 0.00 0.00 3.85
63 64 6.551385 AACTCAACAATCATCACTCAAGAC 57.449 37.500 0.00 0.00 0.00 3.01
64 65 8.150296 TCTTAACTCAACAATCATCACTCAAGA 58.850 33.333 0.00 0.00 0.00 3.02
65 66 8.315391 TCTTAACTCAACAATCATCACTCAAG 57.685 34.615 0.00 0.00 0.00 3.02
66 67 7.933577 ACTCTTAACTCAACAATCATCACTCAA 59.066 33.333 0.00 0.00 0.00 3.02
67 68 7.386025 CACTCTTAACTCAACAATCATCACTCA 59.614 37.037 0.00 0.00 0.00 3.41
68 69 7.386299 ACACTCTTAACTCAACAATCATCACTC 59.614 37.037 0.00 0.00 0.00 3.51
69 70 7.172190 CACACTCTTAACTCAACAATCATCACT 59.828 37.037 0.00 0.00 0.00 3.41
70 71 7.041780 ACACACTCTTAACTCAACAATCATCAC 60.042 37.037 0.00 0.00 0.00 3.06
71 72 6.992123 ACACACTCTTAACTCAACAATCATCA 59.008 34.615 0.00 0.00 0.00 3.07
72 73 7.041780 ACACACACTCTTAACTCAACAATCATC 60.042 37.037 0.00 0.00 0.00 2.92
73 74 6.767902 ACACACACTCTTAACTCAACAATCAT 59.232 34.615 0.00 0.00 0.00 2.45
74 75 6.112734 ACACACACTCTTAACTCAACAATCA 58.887 36.000 0.00 0.00 0.00 2.57
75 76 6.604735 ACACACACTCTTAACTCAACAATC 57.395 37.500 0.00 0.00 0.00 2.67
76 77 8.559536 CATAACACACACTCTTAACTCAACAAT 58.440 33.333 0.00 0.00 0.00 2.71
77 78 7.551262 ACATAACACACACTCTTAACTCAACAA 59.449 33.333 0.00 0.00 0.00 2.83
78 79 7.045416 ACATAACACACACTCTTAACTCAACA 58.955 34.615 0.00 0.00 0.00 3.33
79 80 7.478520 ACATAACACACACTCTTAACTCAAC 57.521 36.000 0.00 0.00 0.00 3.18
80 81 8.500753 AAACATAACACACACTCTTAACTCAA 57.499 30.769 0.00 0.00 0.00 3.02
81 82 8.500753 AAAACATAACACACACTCTTAACTCA 57.499 30.769 0.00 0.00 0.00 3.41
82 83 8.068380 GGAAAACATAACACACACTCTTAACTC 58.932 37.037 0.00 0.00 0.00 3.01
83 84 7.012989 GGGAAAACATAACACACACTCTTAACT 59.987 37.037 0.00 0.00 0.00 2.24
84 85 7.012989 AGGGAAAACATAACACACACTCTTAAC 59.987 37.037 0.00 0.00 0.00 2.01
85 86 7.057894 AGGGAAAACATAACACACACTCTTAA 58.942 34.615 0.00 0.00 0.00 1.85
86 87 6.597562 AGGGAAAACATAACACACACTCTTA 58.402 36.000 0.00 0.00 0.00 2.10
87 88 5.445964 AGGGAAAACATAACACACACTCTT 58.554 37.500 0.00 0.00 0.00 2.85
88 89 5.048846 AGGGAAAACATAACACACACTCT 57.951 39.130 0.00 0.00 0.00 3.24
89 90 4.215613 GGAGGGAAAACATAACACACACTC 59.784 45.833 0.00 0.00 0.00 3.51
90 91 4.142038 GGAGGGAAAACATAACACACACT 58.858 43.478 0.00 0.00 0.00 3.55
91 92 3.254903 GGGAGGGAAAACATAACACACAC 59.745 47.826 0.00 0.00 0.00 3.82
92 93 3.117474 TGGGAGGGAAAACATAACACACA 60.117 43.478 0.00 0.00 0.00 3.72
93 94 3.492337 TGGGAGGGAAAACATAACACAC 58.508 45.455 0.00 0.00 0.00 3.82
94 95 3.885976 TGGGAGGGAAAACATAACACA 57.114 42.857 0.00 0.00 0.00 3.72
95 96 4.620567 GCAATGGGAGGGAAAACATAACAC 60.621 45.833 0.00 0.00 0.00 3.32
96 97 3.513515 GCAATGGGAGGGAAAACATAACA 59.486 43.478 0.00 0.00 0.00 2.41
97 98 3.513515 TGCAATGGGAGGGAAAACATAAC 59.486 43.478 0.00 0.00 0.00 1.89
98 99 3.784178 TGCAATGGGAGGGAAAACATAA 58.216 40.909 0.00 0.00 0.00 1.90
99 100 3.464720 TGCAATGGGAGGGAAAACATA 57.535 42.857 0.00 0.00 0.00 2.29
100 101 2.302733 GTTGCAATGGGAGGGAAAACAT 59.697 45.455 0.59 0.00 0.00 2.71
101 102 1.691434 GTTGCAATGGGAGGGAAAACA 59.309 47.619 0.59 0.00 0.00 2.83
102 103 1.336795 CGTTGCAATGGGAGGGAAAAC 60.337 52.381 11.00 0.00 0.00 2.43
103 104 0.965439 CGTTGCAATGGGAGGGAAAA 59.035 50.000 11.00 0.00 0.00 2.29
104 105 1.531739 GCGTTGCAATGGGAGGGAAA 61.532 55.000 19.93 0.00 0.00 3.13
105 106 1.976474 GCGTTGCAATGGGAGGGAA 60.976 57.895 19.93 0.00 0.00 3.97
106 107 2.361104 GCGTTGCAATGGGAGGGA 60.361 61.111 19.93 0.00 0.00 4.20
107 108 2.676121 TGCGTTGCAATGGGAGGG 60.676 61.111 19.93 0.00 34.76 4.30
108 109 2.568090 GTGCGTTGCAATGGGAGG 59.432 61.111 19.93 0.00 41.47 4.30
109 110 1.851021 TTCGTGCGTTGCAATGGGAG 61.851 55.000 19.93 4.51 41.47 4.30
110 111 1.894282 TTCGTGCGTTGCAATGGGA 60.894 52.632 19.93 5.70 41.47 4.37
111 112 1.729131 GTTCGTGCGTTGCAATGGG 60.729 57.895 19.93 5.82 41.47 4.00
112 113 0.725784 GAGTTCGTGCGTTGCAATGG 60.726 55.000 19.93 8.34 41.47 3.16
113 114 0.235665 AGAGTTCGTGCGTTGCAATG 59.764 50.000 14.54 14.54 41.47 2.82
114 115 0.944386 AAGAGTTCGTGCGTTGCAAT 59.056 45.000 0.59 0.00 41.47 3.56
115 116 0.730265 AAAGAGTTCGTGCGTTGCAA 59.270 45.000 0.00 0.00 41.47 4.08
116 117 0.730265 AAAAGAGTTCGTGCGTTGCA 59.270 45.000 0.00 0.00 35.60 4.08
117 118 1.112459 CAAAAGAGTTCGTGCGTTGC 58.888 50.000 0.00 0.00 0.00 4.17
118 119 1.112459 GCAAAAGAGTTCGTGCGTTG 58.888 50.000 0.00 0.00 0.00 4.10
119 120 1.014352 AGCAAAAGAGTTCGTGCGTT 58.986 45.000 0.00 0.00 41.90 4.84
120 121 1.792949 CTAGCAAAAGAGTTCGTGCGT 59.207 47.619 0.00 0.00 41.90 5.24
121 122 1.792949 ACTAGCAAAAGAGTTCGTGCG 59.207 47.619 0.00 0.00 41.90 5.34
122 123 3.879932 AACTAGCAAAAGAGTTCGTGC 57.120 42.857 0.00 0.00 37.26 5.34
123 124 5.107065 CCCTTAACTAGCAAAAGAGTTCGTG 60.107 44.000 0.00 0.00 37.16 4.35
124 125 4.995487 CCCTTAACTAGCAAAAGAGTTCGT 59.005 41.667 0.00 0.00 37.16 3.85
125 126 4.995487 ACCCTTAACTAGCAAAAGAGTTCG 59.005 41.667 0.00 0.00 37.16 3.95
126 127 7.974482 TTACCCTTAACTAGCAAAAGAGTTC 57.026 36.000 0.00 0.00 37.16 3.01
128 129 9.668497 CTTATTACCCTTAACTAGCAAAAGAGT 57.332 33.333 0.00 0.00 0.00 3.24
129 130 9.886132 TCTTATTACCCTTAACTAGCAAAAGAG 57.114 33.333 0.00 0.00 0.00 2.85
130 131 9.662947 GTCTTATTACCCTTAACTAGCAAAAGA 57.337 33.333 0.00 0.00 0.00 2.52
131 132 8.601476 CGTCTTATTACCCTTAACTAGCAAAAG 58.399 37.037 0.00 0.00 0.00 2.27
132 133 8.313292 TCGTCTTATTACCCTTAACTAGCAAAA 58.687 33.333 0.00 0.00 0.00 2.44
133 134 7.839907 TCGTCTTATTACCCTTAACTAGCAAA 58.160 34.615 0.00 0.00 0.00 3.68
134 135 7.408756 TCGTCTTATTACCCTTAACTAGCAA 57.591 36.000 0.00 0.00 0.00 3.91
135 136 7.123247 ACTTCGTCTTATTACCCTTAACTAGCA 59.877 37.037 0.00 0.00 0.00 3.49
136 137 7.487484 ACTTCGTCTTATTACCCTTAACTAGC 58.513 38.462 0.00 0.00 0.00 3.42
137 138 9.866798 AAACTTCGTCTTATTACCCTTAACTAG 57.133 33.333 0.00 0.00 0.00 2.57
242 246 5.568685 TCGCTATCCAGTATTCATCTAGC 57.431 43.478 0.00 0.00 0.00 3.42
253 257 1.957177 ACACATCGATCGCTATCCAGT 59.043 47.619 11.09 0.00 0.00 4.00
264 268 8.155510 TCTACTACTATTACTCCACACATCGAT 58.844 37.037 0.00 0.00 0.00 3.59
396 406 7.869429 CGAGAAAATAGTATACGGTGGGTAAAT 59.131 37.037 0.00 0.00 34.09 1.40
590 607 2.025898 CCCAACGTGTAAAGGGTTGTT 58.974 47.619 0.00 0.00 39.42 2.83
615 633 3.367607 TGCACGCAAACAACAAATACTC 58.632 40.909 0.00 0.00 0.00 2.59
631 650 4.027783 CACAAAGTAAACAACACATGCACG 60.028 41.667 0.00 0.00 0.00 5.34
649 668 6.238731 CCAGTAAGAGAATCAAGCAACACAAA 60.239 38.462 0.00 0.00 37.82 2.83
651 670 4.756642 CCAGTAAGAGAATCAAGCAACACA 59.243 41.667 0.00 0.00 37.82 3.72
662 681 8.552296 ACAAGGTTATCAATCCAGTAAGAGAAT 58.448 33.333 0.00 0.00 0.00 2.40
739 758 6.705825 AGCTGCGTTAAAATTTCTTGGAAAAT 59.294 30.769 0.00 0.00 0.00 1.82
741 760 5.596845 AGCTGCGTTAAAATTTCTTGGAAA 58.403 33.333 0.00 0.00 0.00 3.13
745 764 4.975502 TGTGAGCTGCGTTAAAATTTCTTG 59.024 37.500 0.00 0.00 0.00 3.02
746 765 5.181690 TGTGAGCTGCGTTAAAATTTCTT 57.818 34.783 0.00 0.00 0.00 2.52
753 772 2.478894 GCTACTTGTGAGCTGCGTTAAA 59.521 45.455 0.00 0.00 36.96 1.52
754 773 2.066262 GCTACTTGTGAGCTGCGTTAA 58.934 47.619 0.00 0.00 36.96 2.01
778 797 6.222389 CAAGGCAAAACATTTACCAAGATCA 58.778 36.000 0.00 0.00 0.00 2.92
846 865 5.706916 CTCCAATTGTGATTTGACTTCTGG 58.293 41.667 4.43 0.00 0.00 3.86
971 1084 1.408702 TGAGCAGGTTTTTCCTTGCAC 59.591 47.619 0.00 0.00 45.67 4.57
1106 1219 2.362397 CCAGCTAGAATGCGAGGTTAGA 59.638 50.000 0.00 0.00 38.13 2.10
1151 1264 4.947147 GTTCACCTGGGGCGCACA 62.947 66.667 13.89 8.09 0.00 4.57
1189 1302 4.994471 CCCACACAGAGCAGCGCA 62.994 66.667 11.47 0.00 0.00 6.09
1312 1425 3.702048 GCAGTGGGGCCGTAGTCA 61.702 66.667 0.00 0.00 0.00 3.41
1462 1575 8.786826 TCTATTGACAGATCGGTTAAACAAAT 57.213 30.769 7.25 1.80 0.00 2.32
1522 1635 6.040209 TGAAATGGTTTATCAGCTGCAAAT 57.960 33.333 9.47 0.00 0.00 2.32
1562 1681 7.994911 TCTCATATGCTCATTGTCAGGTAAATT 59.005 33.333 0.00 0.00 0.00 1.82
1628 1747 3.828921 ACCTACAAACAGAAGGGGAAAC 58.171 45.455 0.00 0.00 34.52 2.78
1709 1828 0.745845 GCAGGGCATCAACGTCATCT 60.746 55.000 0.00 0.00 0.00 2.90
1896 2015 0.729116 CAGCTGGCCATTCGTTAGTG 59.271 55.000 5.51 0.00 0.00 2.74
2119 2238 8.157476 GGAAAAGCTAGGATGGTATCATAGAAA 58.843 37.037 12.98 0.00 44.16 2.52
2197 2317 5.067544 TCTGCAAGAAACAAATCATGTCACA 59.932 36.000 0.00 0.00 42.31 3.58
2347 2467 5.034797 GGACAAGTTGACTTTGTTAAGTGC 58.965 41.667 10.54 0.00 44.51 4.40
2383 2503 9.273016 GTAATGGCATAACAGAAGTATACACAT 57.727 33.333 0.00 0.00 0.00 3.21
2416 2536 6.487331 TCTTAAACCGTGAAAGCAATAAAGGA 59.513 34.615 0.00 0.00 0.00 3.36
2497 2621 4.916983 AACTGAAATTAACAGCAGCACA 57.083 36.364 11.01 0.00 38.74 4.57
2570 2694 9.554395 TGACTTGACAGTTAAACAGATTATCAA 57.446 29.630 0.00 0.00 31.22 2.57
2588 2712 6.116126 AGGAGTAGCCAATTAATGACTTGAC 58.884 40.000 0.00 0.00 40.02 3.18
2916 3040 0.606673 GACAGTGTTCCCTGGCTTCC 60.607 60.000 0.00 0.00 37.51 3.46
2999 3123 4.040217 CCTCTTCAGTAAGGCTATGAGCAT 59.960 45.833 0.21 0.00 44.75 3.79
3032 3156 0.322997 CCTACGGGGTTTTGCATCCA 60.323 55.000 0.00 0.00 0.00 3.41
3072 3212 8.619281 AGAGAGAGAGAGAGAGAGAGATAGATA 58.381 40.741 0.00 0.00 0.00 1.98
3073 3213 7.477864 AGAGAGAGAGAGAGAGAGAGATAGAT 58.522 42.308 0.00 0.00 0.00 1.98
3074 3214 6.857848 AGAGAGAGAGAGAGAGAGAGATAGA 58.142 44.000 0.00 0.00 0.00 1.98
3075 3215 6.947733 AGAGAGAGAGAGAGAGAGAGAGATAG 59.052 46.154 0.00 0.00 0.00 2.08
3076 3216 6.857848 AGAGAGAGAGAGAGAGAGAGAGATA 58.142 44.000 0.00 0.00 0.00 1.98
3077 3217 5.714863 AGAGAGAGAGAGAGAGAGAGAGAT 58.285 45.833 0.00 0.00 0.00 2.75
3078 3218 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3079 3219 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3080 3220 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3081 3221 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3082 3222 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3083 3223 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3084 3224 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3085 3225 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3086 3226 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3087 3227 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3088 3228 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
3089 3229 4.892345 TGAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
3090 3230 4.871822 TGAGAGAGAGAGAGAGAGAGAGA 58.128 47.826 0.00 0.00 0.00 3.10
3091 3231 5.539979 CATGAGAGAGAGAGAGAGAGAGAG 58.460 50.000 0.00 0.00 0.00 3.20
3245 3385 1.548719 AGCGCACAGTAGTAACCATCA 59.451 47.619 11.47 0.00 0.00 3.07
3299 3439 2.467566 AGTGTTCAACCGGTATCACC 57.532 50.000 8.00 0.00 34.05 4.02
3335 3475 0.038744 CCTCAGGTTCCACAGGCATT 59.961 55.000 0.00 0.00 0.00 3.56
3422 3562 2.023673 TGCTGTGAAACCCACTCAAAG 58.976 47.619 0.00 0.00 45.86 2.77
3670 3810 6.938030 CCTTTACATTAAGTCGGGCCATATAA 59.062 38.462 4.39 0.00 0.00 0.98
3946 4086 9.130661 CCCCATATGACTCACAAAATAACATAA 57.869 33.333 3.65 0.00 0.00 1.90
3969 4109 9.025041 CCATTAATTTCAGTTATCTAATCCCCC 57.975 37.037 0.00 0.00 0.00 5.40
4014 4154 3.582714 AGCTGAAAAGGCTATTTGCAC 57.417 42.857 0.00 0.00 45.15 4.57
4110 4251 8.916628 TTAGCAATAGGATACATGCACAAATA 57.083 30.769 0.00 0.00 42.98 1.40
4111 4252 7.522725 GCTTAGCAATAGGATACATGCACAAAT 60.523 37.037 0.00 0.00 42.98 2.32
4125 4266 5.904362 ACAAAAAGGAGCTTAGCAATAGG 57.096 39.130 7.07 0.00 0.00 2.57
4242 4383 1.339055 TGCAAGAGTAGTGTGCCATCC 60.339 52.381 0.00 0.00 37.48 3.51
4389 4563 8.926710 CCAAGTAAGTTACTGAAGTATGTCTTG 58.073 37.037 16.22 6.21 39.39 3.02
4426 4672 1.225855 CCTTGTAAGCGAGTTGTGCA 58.774 50.000 0.00 0.00 33.85 4.57
4447 4693 5.221682 TGGTCAAACATCAATTTCAGGCATT 60.222 36.000 0.00 0.00 0.00 3.56
4510 4756 4.262894 CCAATACCTGTCACCAGTACAAGT 60.263 45.833 0.00 0.00 36.95 3.16
4512 4758 3.558321 GCCAATACCTGTCACCAGTACAA 60.558 47.826 0.00 0.00 36.95 2.41
4519 4765 1.451387 CCCGCCAATACCTGTCACC 60.451 63.158 0.00 0.00 0.00 4.02
4696 4942 5.363562 AGAAGTCATGAACATCAGGCATA 57.636 39.130 0.00 0.00 0.00 3.14
4724 4970 1.346068 AGGACTTGTCTCAGTGGCTTC 59.654 52.381 0.61 0.00 0.00 3.86
4825 5071 3.131755 AGTTATACCTGACCAACCTACGC 59.868 47.826 0.00 0.00 0.00 4.42
4864 5110 7.546358 ACAATGAAAATTTCTTGTGACTGTCA 58.454 30.769 16.71 6.36 33.17 3.58
4996 5254 8.906867 CATCTATGACAACATATTTCTTGGGTT 58.093 33.333 0.00 0.00 38.17 4.11
4998 5256 8.455903 ACATCTATGACAACATATTTCTTGGG 57.544 34.615 0.00 0.00 38.17 4.12
5008 5266 6.427974 CGTCGTACTACATCTATGACAACAT 58.572 40.000 0.00 0.00 40.16 2.71
5025 5283 1.226888 GATGGAGGGTGCGTCGTAC 60.227 63.158 4.73 4.73 0.00 3.67
5045 5306 6.368516 ACAAATTTATGACAAAAGCCGGATTG 59.631 34.615 5.31 9.66 0.00 2.67
5046 5307 6.368516 CACAAATTTATGACAAAAGCCGGATT 59.631 34.615 5.05 0.00 0.00 3.01
5081 5375 7.885399 CCATTACAAATTTATCCCCCACAAAAA 59.115 33.333 0.00 0.00 0.00 1.94
5082 5376 7.237679 TCCATTACAAATTTATCCCCCACAAAA 59.762 33.333 0.00 0.00 0.00 2.44
5083 5377 6.730977 TCCATTACAAATTTATCCCCCACAAA 59.269 34.615 0.00 0.00 0.00 2.83
5084 5378 6.264528 TCCATTACAAATTTATCCCCCACAA 58.735 36.000 0.00 0.00 0.00 3.33
5085 5379 5.843469 TCCATTACAAATTTATCCCCCACA 58.157 37.500 0.00 0.00 0.00 4.17
5086 5380 6.326323 ACATCCATTACAAATTTATCCCCCAC 59.674 38.462 0.00 0.00 0.00 4.61
5087 5381 6.448202 ACATCCATTACAAATTTATCCCCCA 58.552 36.000 0.00 0.00 0.00 4.96
5088 5382 6.994421 ACATCCATTACAAATTTATCCCCC 57.006 37.500 0.00 0.00 0.00 5.40
5089 5383 8.017418 TGAACATCCATTACAAATTTATCCCC 57.983 34.615 0.00 0.00 0.00 4.81
5090 5384 9.696917 GATGAACATCCATTACAAATTTATCCC 57.303 33.333 3.69 0.00 31.76 3.85
5094 5388 8.694540 CCCAGATGAACATCCATTACAAATTTA 58.305 33.333 10.63 0.00 38.58 1.40
5095 5389 7.399765 TCCCAGATGAACATCCATTACAAATTT 59.600 33.333 10.63 0.00 38.58 1.82
5096 5390 6.896860 TCCCAGATGAACATCCATTACAAATT 59.103 34.615 10.63 0.00 38.58 1.82
5097 5391 6.322201 GTCCCAGATGAACATCCATTACAAAT 59.678 38.462 10.63 0.00 38.58 2.32
5098 5392 5.652014 GTCCCAGATGAACATCCATTACAAA 59.348 40.000 10.63 0.00 38.58 2.83
5099 5393 5.192927 GTCCCAGATGAACATCCATTACAA 58.807 41.667 10.63 0.00 38.58 2.41
5100 5394 4.683129 CGTCCCAGATGAACATCCATTACA 60.683 45.833 10.63 0.00 38.58 2.41
5106 5400 1.757118 TCTCGTCCCAGATGAACATCC 59.243 52.381 10.63 0.00 38.58 3.51
5239 5533 4.226427 AGCAAGCAAGGATCTCATGTAA 57.774 40.909 0.00 0.00 0.00 2.41
5246 5540 1.920610 AAGCAAGCAAGCAAGGATCT 58.079 45.000 3.19 0.00 36.85 2.75
5251 5545 1.068127 ACTCCAAAGCAAGCAAGCAAG 59.932 47.619 3.19 0.00 36.85 4.01
5252 5546 1.113788 ACTCCAAAGCAAGCAAGCAA 58.886 45.000 3.19 0.00 36.85 3.91
5253 5547 1.113788 AACTCCAAAGCAAGCAAGCA 58.886 45.000 3.19 0.00 36.85 3.91
5254 5548 2.229675 AAACTCCAAAGCAAGCAAGC 57.770 45.000 0.00 0.00 0.00 4.01
5262 5556 2.476241 CGATTTGCCAAAACTCCAAAGC 59.524 45.455 0.00 0.00 32.65 3.51
5310 5604 3.459227 TGGCCATTGATGTCTCCTATGAA 59.541 43.478 0.00 0.00 0.00 2.57
5326 5621 1.223487 GACATACCCACGTGGCCAT 59.777 57.895 29.75 19.89 37.83 4.40
5333 5628 6.808704 CACAATCTATGATAGACATACCCACG 59.191 42.308 3.96 0.00 40.07 4.94
5338 5633 8.807118 TCCCTTCACAATCTATGATAGACATAC 58.193 37.037 3.96 0.00 40.07 2.39
5339 5634 8.956446 TCCCTTCACAATCTATGATAGACATA 57.044 34.615 3.96 0.00 40.07 2.29
5340 5635 7.526860 GCTCCCTTCACAATCTATGATAGACAT 60.527 40.741 3.96 0.00 42.39 3.06
5341 5636 6.239430 GCTCCCTTCACAATCTATGATAGACA 60.239 42.308 3.96 0.00 37.69 3.41
5353 5648 1.280421 GAGGTCTGCTCCCTTCACAAT 59.720 52.381 0.00 0.00 30.60 2.71
5361 5656 0.107459 GGTCATTGAGGTCTGCTCCC 60.107 60.000 0.00 0.00 0.00 4.30
5362 5657 0.615331 TGGTCATTGAGGTCTGCTCC 59.385 55.000 0.00 0.00 0.00 4.70
5366 5661 1.432514 CACGTGGTCATTGAGGTCTG 58.567 55.000 7.95 0.00 0.00 3.51
5378 5673 1.485066 GATAGACATTCCCCACGTGGT 59.515 52.381 31.80 13.54 0.00 4.16
5389 5691 7.062957 CCCCTTCAAAACCTATGATAGACATT 58.937 38.462 0.00 0.00 40.07 2.71
5391 5693 5.491078 ACCCCTTCAAAACCTATGATAGACA 59.509 40.000 0.00 0.00 0.00 3.41
5403 5705 1.824852 CCCTATGCACCCCTTCAAAAC 59.175 52.381 0.00 0.00 0.00 2.43
5426 5728 3.363627 TGGTTCATGCTGGCATAATCAA 58.636 40.909 7.79 0.00 34.91 2.57
5429 5731 2.696707 CCTTGGTTCATGCTGGCATAAT 59.303 45.455 7.79 0.00 34.91 1.28
5433 5735 0.609957 CTCCTTGGTTCATGCTGGCA 60.610 55.000 0.00 0.00 0.00 4.92
5435 5737 1.280133 TCTCTCCTTGGTTCATGCTGG 59.720 52.381 0.00 0.00 0.00 4.85
5436 5738 2.746362 GTTCTCTCCTTGGTTCATGCTG 59.254 50.000 0.00 0.00 0.00 4.41
5455 5757 2.548480 GGTGAGAAGTTTTAGCAGCGTT 59.452 45.455 0.00 0.00 0.00 4.84
5461 5763 1.519408 TGCCGGTGAGAAGTTTTAGC 58.481 50.000 1.90 0.00 0.00 3.09
5467 5769 6.119536 TGAAATTAATATGCCGGTGAGAAGT 58.880 36.000 1.90 0.00 0.00 3.01
5468 5770 6.618287 TGAAATTAATATGCCGGTGAGAAG 57.382 37.500 1.90 0.00 0.00 2.85
5469 5771 7.717436 TGTATGAAATTAATATGCCGGTGAGAA 59.283 33.333 1.90 0.00 0.00 2.87
5477 5779 8.230486 CCTCTCGTTGTATGAAATTAATATGCC 58.770 37.037 0.00 0.00 0.00 4.40
5490 5792 2.009774 CTTTGGCCCTCTCGTTGTATG 58.990 52.381 0.00 0.00 0.00 2.39
5494 5796 0.535102 ACACTTTGGCCCTCTCGTTG 60.535 55.000 0.00 0.00 0.00 4.10
5496 5798 1.071471 CACACTTTGGCCCTCTCGT 59.929 57.895 0.00 0.00 0.00 4.18
5497 5799 0.036010 ATCACACTTTGGCCCTCTCG 60.036 55.000 0.00 0.00 0.00 4.04
5502 5804 2.301346 CATCCTATCACACTTTGGCCC 58.699 52.381 0.00 0.00 0.00 5.80
5517 5819 3.965888 GGTCTCAACCAAGCATCCT 57.034 52.632 0.00 0.00 45.68 3.24
5535 5837 6.757897 TTAATTCAACCTAGCCATGTCTTG 57.242 37.500 0.00 0.00 0.00 3.02
5548 5850 3.428862 CCCGCATCCTGTTTAATTCAACC 60.429 47.826 0.20 0.00 0.00 3.77
5549 5851 3.192633 ACCCGCATCCTGTTTAATTCAAC 59.807 43.478 0.00 0.00 0.00 3.18
5552 5854 4.450082 AAACCCGCATCCTGTTTAATTC 57.550 40.909 0.00 0.00 30.85 2.17
5591 5894 4.410400 CTGCTCCAACCGTCCCCC 62.410 72.222 0.00 0.00 0.00 5.40
5597 5900 1.012086 CATGATGACTGCTCCAACCG 58.988 55.000 0.00 0.00 0.00 4.44
5613 5916 5.049060 TGACGGTTGTAATGAACTTTCCATG 60.049 40.000 0.00 0.00 0.00 3.66
5614 5917 5.067273 TGACGGTTGTAATGAACTTTCCAT 58.933 37.500 0.00 0.00 0.00 3.41
5615 5918 4.452825 TGACGGTTGTAATGAACTTTCCA 58.547 39.130 0.00 0.00 0.00 3.53
5616 5919 5.427036 TTGACGGTTGTAATGAACTTTCC 57.573 39.130 0.00 0.00 0.00 3.13
5617 5920 6.664515 TCATTGACGGTTGTAATGAACTTTC 58.335 36.000 11.46 0.00 37.74 2.62
5618 5921 6.627395 TCATTGACGGTTGTAATGAACTTT 57.373 33.333 11.46 0.00 37.74 2.66
5619 5922 6.627395 TTCATTGACGGTTGTAATGAACTT 57.373 33.333 17.48 0.00 42.57 2.66
5620 5923 6.627395 TTTCATTGACGGTTGTAATGAACT 57.373 33.333 19.49 0.00 45.31 3.01
5621 5924 7.136119 TCTTTTCATTGACGGTTGTAATGAAC 58.864 34.615 19.49 0.00 45.31 3.18
5622 5925 7.265647 TCTTTTCATTGACGGTTGTAATGAA 57.734 32.000 17.48 17.48 44.50 2.57
5623 5926 6.869315 TCTTTTCATTGACGGTTGTAATGA 57.131 33.333 10.40 10.40 38.61 2.57
5624 5927 7.062138 CCAATCTTTTCATTGACGGTTGTAATG 59.938 37.037 7.13 7.13 36.03 1.90
5625 5928 7.090173 CCAATCTTTTCATTGACGGTTGTAAT 58.910 34.615 0.00 0.00 36.03 1.89
5626 5929 6.039941 ACCAATCTTTTCATTGACGGTTGTAA 59.960 34.615 0.00 0.00 36.03 2.41
5627 5930 5.533154 ACCAATCTTTTCATTGACGGTTGTA 59.467 36.000 0.00 0.00 36.03 2.41
5628 5931 4.340950 ACCAATCTTTTCATTGACGGTTGT 59.659 37.500 0.00 0.00 36.03 3.32
5629 5932 4.870363 ACCAATCTTTTCATTGACGGTTG 58.130 39.130 0.00 0.00 36.03 3.77
5630 5933 5.768164 ACTACCAATCTTTTCATTGACGGTT 59.232 36.000 0.00 0.00 36.03 4.44
5631 5934 5.313712 ACTACCAATCTTTTCATTGACGGT 58.686 37.500 0.00 0.00 36.03 4.83
5632 5935 5.880054 ACTACCAATCTTTTCATTGACGG 57.120 39.130 0.00 0.00 36.03 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.