Multiple sequence alignment - TraesCS5B01G190500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G190500 chr5B 100.000 2345 0 0 1 2345 344537861 344535517 0.000000e+00 4331.0
1 TraesCS5B01G190500 chr5B 98.727 707 3 2 770 1470 345855150 345854444 0.000000e+00 1251.0
2 TraesCS5B01G190500 chr5B 94.915 413 16 5 354 764 36079064 36079473 1.960000e-180 641.0
3 TraesCS5B01G190500 chr5B 82.232 439 45 7 1936 2343 164401714 164402150 4.800000e-92 348.0
4 TraesCS5B01G190500 chr5B 85.630 341 22 10 1 341 345855503 345855190 1.340000e-87 333.0
5 TraesCS5B01G190500 chr5B 81.006 358 46 8 2008 2343 546887678 546888035 4.970000e-67 265.0
6 TraesCS5B01G190500 chr5B 86.290 124 11 3 1553 1670 345819573 345819450 1.890000e-26 130.0
7 TraesCS5B01G190500 chr5D 89.914 1626 86 30 770 2343 301488230 301486631 0.000000e+00 2023.0
8 TraesCS5B01G190500 chr5D 87.395 357 31 8 4 354 301488587 301488239 4.700000e-107 398.0
9 TraesCS5B01G190500 chr5D 82.232 439 45 7 1936 2343 142908040 142908476 4.800000e-92 348.0
10 TraesCS5B01G190500 chr5D 81.050 438 51 8 1938 2343 8628238 8627801 1.050000e-83 320.0
11 TraesCS5B01G190500 chr5D 79.101 445 49 15 1940 2341 32237414 32236971 1.380000e-67 267.0
12 TraesCS5B01G190500 chr5A 88.215 1188 77 31 770 1941 398411037 398412177 0.000000e+00 1360.0
13 TraesCS5B01G190500 chr5A 84.954 432 48 11 945 1360 395886193 395885763 2.790000e-114 422.0
14 TraesCS5B01G190500 chr5A 82.904 427 42 12 1948 2343 180364454 180364880 2.870000e-94 355.0
15 TraesCS5B01G190500 chr5A 86.538 260 28 6 98 354 398410773 398411028 1.770000e-71 279.0
16 TraesCS5B01G190500 chr7B 95.694 418 8 6 352 764 705973080 705973492 0.000000e+00 664.0
17 TraesCS5B01G190500 chr3B 95.663 415 11 7 354 764 5168017 5168428 0.000000e+00 660.0
18 TraesCS5B01G190500 chr3B 94.952 416 14 6 354 764 809182681 809182268 0.000000e+00 645.0
19 TraesCS5B01G190500 chr3B 86.087 115 10 3 2235 2343 242205710 242205596 4.090000e-23 119.0
20 TraesCS5B01G190500 chr4B 95.400 413 15 4 353 764 633150438 633150029 0.000000e+00 654.0
21 TraesCS5B01G190500 chr4B 83.108 296 30 9 2068 2343 37078663 37078958 3.870000e-63 252.0
22 TraesCS5B01G190500 chr4A 94.964 417 15 6 351 764 713367496 713367083 0.000000e+00 649.0
23 TraesCS5B01G190500 chr4A 82.540 126 12 5 2226 2343 514729519 514729396 4.120000e-18 102.0
24 TraesCS5B01G190500 chr2B 94.484 417 15 7 353 764 23687970 23688383 9.140000e-179 636.0
25 TraesCS5B01G190500 chr2B 94.444 414 21 2 353 765 643205050 643205462 9.140000e-179 636.0
26 TraesCS5B01G190500 chr2B 77.586 174 24 6 2106 2265 684756035 684756207 8.920000e-15 91.6
27 TraesCS5B01G190500 chr6B 94.673 413 14 7 354 765 701069121 701069526 3.290000e-178 634.0
28 TraesCS5B01G190500 chr3D 85.955 356 35 8 1998 2343 166516358 166516008 1.320000e-97 366.0
29 TraesCS5B01G190500 chr3A 83.657 361 33 12 2007 2343 641637745 641637387 1.350000e-82 316.0
30 TraesCS5B01G190500 chr7D 80.109 367 56 5 1993 2343 622303930 622303565 8.310000e-65 257.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G190500 chr5B 344535517 344537861 2344 True 4331.0 4331 100.0000 1 2345 1 chr5B.!!$R1 2344
1 TraesCS5B01G190500 chr5B 345854444 345855503 1059 True 792.0 1251 92.1785 1 1470 2 chr5B.!!$R3 1469
2 TraesCS5B01G190500 chr5D 301486631 301488587 1956 True 1210.5 2023 88.6545 4 2343 2 chr5D.!!$R3 2339
3 TraesCS5B01G190500 chr5A 398410773 398412177 1404 False 819.5 1360 87.3765 98 1941 2 chr5A.!!$F2 1843

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
362 387 0.040958 CTCACAACTGCGAAAGTGCC 60.041 55.0 0.0 0.0 39.81 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2268 2358 0.247736 AGTAGCCAAGAAGCAGGTCG 59.752 55.0 0.0 0.0 34.23 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 4.719369 GTTGCTCCGGCGAGACGT 62.719 66.667 9.30 0.00 42.25 4.34
61 62 2.126071 CCGGCGAGACGTGACAAT 60.126 61.111 9.30 0.00 0.00 2.71
63 64 0.457166 CCGGCGAGACGTGACAATAA 60.457 55.000 9.30 0.00 0.00 1.40
143 144 4.840115 AGGAAATGAAAGGGCATCTTTTCA 59.160 37.500 18.29 13.71 45.00 2.69
146 147 6.093082 GGAAATGAAAGGGCATCTTTTCATTG 59.907 38.462 21.32 0.00 45.00 2.82
151 152 1.826720 GGGCATCTTTTCATTGCTGGA 59.173 47.619 0.00 0.00 36.62 3.86
154 155 4.510571 GGCATCTTTTCATTGCTGGAAAT 58.489 39.130 0.00 0.00 34.50 2.17
259 265 1.437625 CAAAATCGCCCGCCAAAAAT 58.562 45.000 0.00 0.00 0.00 1.82
305 312 3.605412 ATACGGACGGGGGACACCA 62.605 63.158 0.00 0.00 42.91 4.17
322 329 1.671054 CATGGGCGAAACAGACGGT 60.671 57.895 0.00 0.00 0.00 4.83
337 344 4.037690 CAGACGGTTTGCAAAAGAAAGAG 58.962 43.478 14.67 3.19 0.00 2.85
354 379 1.263776 GAGATCGACTCACAACTGCG 58.736 55.000 9.30 0.00 44.36 5.18
355 380 0.881796 AGATCGACTCACAACTGCGA 59.118 50.000 0.00 0.00 35.32 5.10
356 381 1.269723 AGATCGACTCACAACTGCGAA 59.730 47.619 0.00 0.00 34.46 4.70
357 382 2.058798 GATCGACTCACAACTGCGAAA 58.941 47.619 0.00 0.00 34.46 3.46
358 383 1.487482 TCGACTCACAACTGCGAAAG 58.513 50.000 0.00 0.00 0.00 2.62
360 385 1.071239 CGACTCACAACTGCGAAAGTG 60.071 52.381 0.00 0.00 39.81 3.16
362 387 0.040958 CTCACAACTGCGAAAGTGCC 60.041 55.000 0.00 0.00 39.81 5.01
363 388 0.463654 TCACAACTGCGAAAGTGCCT 60.464 50.000 0.00 0.00 39.81 4.75
364 389 0.381801 CACAACTGCGAAAGTGCCTT 59.618 50.000 0.00 0.00 39.81 4.35
365 390 1.102978 ACAACTGCGAAAGTGCCTTT 58.897 45.000 0.46 0.46 39.81 3.11
366 391 1.065551 ACAACTGCGAAAGTGCCTTTC 59.934 47.619 14.28 14.28 44.29 2.62
367 392 1.334869 CAACTGCGAAAGTGCCTTTCT 59.665 47.619 19.11 4.59 45.19 2.52
368 393 0.947244 ACTGCGAAAGTGCCTTTCTG 59.053 50.000 19.11 14.97 45.19 3.02
369 394 0.386478 CTGCGAAAGTGCCTTTCTGC 60.386 55.000 22.03 22.03 45.19 4.26
370 395 0.819259 TGCGAAAGTGCCTTTCTGCT 60.819 50.000 25.10 2.83 45.19 4.24
371 396 0.110010 GCGAAAGTGCCTTTCTGCTC 60.110 55.000 21.80 10.50 45.19 4.26
372 397 0.519077 CGAAAGTGCCTTTCTGCTCC 59.481 55.000 19.11 1.19 45.19 4.70
373 398 0.884514 GAAAGTGCCTTTCTGCTCCC 59.115 55.000 16.08 0.00 44.33 4.30
374 399 0.890996 AAAGTGCCTTTCTGCTCCCG 60.891 55.000 0.00 0.00 0.00 5.14
375 400 1.768684 AAGTGCCTTTCTGCTCCCGA 61.769 55.000 0.00 0.00 0.00 5.14
376 401 1.743252 GTGCCTTTCTGCTCCCGAG 60.743 63.158 0.00 0.00 0.00 4.63
397 422 2.416747 CTCATTTGAGCTCGGTGAACA 58.583 47.619 9.64 0.00 35.13 3.18
398 423 2.414481 CTCATTTGAGCTCGGTGAACAG 59.586 50.000 9.64 0.00 35.13 3.16
399 424 2.146342 CATTTGAGCTCGGTGAACAGT 58.854 47.619 9.64 0.00 0.00 3.55
400 425 3.006430 TCATTTGAGCTCGGTGAACAGTA 59.994 43.478 9.64 0.00 0.00 2.74
401 426 3.462483 TTTGAGCTCGGTGAACAGTAA 57.538 42.857 9.64 0.00 0.00 2.24
402 427 3.462483 TTGAGCTCGGTGAACAGTAAA 57.538 42.857 9.64 0.00 0.00 2.01
403 428 3.462483 TGAGCTCGGTGAACAGTAAAA 57.538 42.857 9.64 0.00 0.00 1.52
404 429 4.002906 TGAGCTCGGTGAACAGTAAAAT 57.997 40.909 9.64 0.00 0.00 1.82
405 430 3.994392 TGAGCTCGGTGAACAGTAAAATC 59.006 43.478 9.64 0.00 0.00 2.17
406 431 2.993899 AGCTCGGTGAACAGTAAAATCG 59.006 45.455 0.00 0.00 0.00 3.34
407 432 2.991190 GCTCGGTGAACAGTAAAATCGA 59.009 45.455 0.00 0.00 0.00 3.59
408 433 3.430895 GCTCGGTGAACAGTAAAATCGAA 59.569 43.478 0.00 0.00 0.00 3.71
409 434 4.084223 GCTCGGTGAACAGTAAAATCGAAA 60.084 41.667 0.00 0.00 0.00 3.46
410 435 5.559417 GCTCGGTGAACAGTAAAATCGAAAA 60.559 40.000 0.00 0.00 0.00 2.29
411 436 6.360844 TCGGTGAACAGTAAAATCGAAAAA 57.639 33.333 0.00 0.00 0.00 1.94
464 489 6.729690 AAAAATCCCAGAGAAACATTGACA 57.270 33.333 0.00 0.00 0.00 3.58
465 490 6.729690 AAAATCCCAGAGAAACATTGACAA 57.270 33.333 0.00 0.00 0.00 3.18
466 491 6.729690 AAATCCCAGAGAAACATTGACAAA 57.270 33.333 0.00 0.00 0.00 2.83
467 492 6.729690 AATCCCAGAGAAACATTGACAAAA 57.270 33.333 0.00 0.00 0.00 2.44
468 493 5.772825 TCCCAGAGAAACATTGACAAAAG 57.227 39.130 0.00 0.00 0.00 2.27
469 494 5.200483 TCCCAGAGAAACATTGACAAAAGT 58.800 37.500 0.00 0.00 0.00 2.66
470 495 5.656416 TCCCAGAGAAACATTGACAAAAGTT 59.344 36.000 0.00 0.00 0.00 2.66
471 496 5.979517 CCCAGAGAAACATTGACAAAAGTTC 59.020 40.000 9.09 5.33 0.00 3.01
472 497 6.183360 CCCAGAGAAACATTGACAAAAGTTCT 60.183 38.462 9.09 9.17 0.00 3.01
473 498 7.013274 CCCAGAGAAACATTGACAAAAGTTCTA 59.987 37.037 9.09 0.00 0.00 2.10
474 499 8.405531 CCAGAGAAACATTGACAAAAGTTCTAA 58.594 33.333 9.09 0.00 0.00 2.10
475 500 9.443283 CAGAGAAACATTGACAAAAGTTCTAAG 57.557 33.333 9.09 3.77 0.00 2.18
476 501 9.178758 AGAGAAACATTGACAAAAGTTCTAAGT 57.821 29.630 9.09 0.00 0.00 2.24
477 502 9.226345 GAGAAACATTGACAAAAGTTCTAAGTG 57.774 33.333 9.09 0.00 0.00 3.16
478 503 7.702348 AGAAACATTGACAAAAGTTCTAAGTGC 59.298 33.333 9.09 0.00 0.00 4.40
479 504 6.699575 ACATTGACAAAAGTTCTAAGTGCT 57.300 33.333 0.00 0.00 0.00 4.40
480 505 7.100458 ACATTGACAAAAGTTCTAAGTGCTT 57.900 32.000 0.00 0.00 0.00 3.91
481 506 6.974622 ACATTGACAAAAGTTCTAAGTGCTTG 59.025 34.615 0.00 0.00 0.00 4.01
482 507 4.920376 TGACAAAAGTTCTAAGTGCTTGC 58.080 39.130 0.00 0.00 0.00 4.01
483 508 4.397730 TGACAAAAGTTCTAAGTGCTTGCA 59.602 37.500 0.00 0.00 0.00 4.08
484 509 5.105957 TGACAAAAGTTCTAAGTGCTTGCAA 60.106 36.000 0.00 0.00 0.00 4.08
485 510 5.719173 ACAAAAGTTCTAAGTGCTTGCAAA 58.281 33.333 0.00 0.00 0.00 3.68
486 511 6.162777 ACAAAAGTTCTAAGTGCTTGCAAAA 58.837 32.000 0.00 0.00 0.00 2.44
487 512 6.648725 ACAAAAGTTCTAAGTGCTTGCAAAAA 59.351 30.769 0.00 0.00 0.00 1.94
488 513 7.334171 ACAAAAGTTCTAAGTGCTTGCAAAAAT 59.666 29.630 0.00 0.00 0.00 1.82
489 514 7.848223 AAAGTTCTAAGTGCTTGCAAAAATT 57.152 28.000 0.00 0.00 0.00 1.82
490 515 7.468922 AAGTTCTAAGTGCTTGCAAAAATTC 57.531 32.000 0.00 0.00 0.00 2.17
491 516 6.572519 AGTTCTAAGTGCTTGCAAAAATTCA 58.427 32.000 0.00 0.00 0.00 2.57
492 517 7.212274 AGTTCTAAGTGCTTGCAAAAATTCAT 58.788 30.769 0.00 0.00 0.00 2.57
493 518 7.383300 AGTTCTAAGTGCTTGCAAAAATTCATC 59.617 33.333 0.00 0.00 0.00 2.92
494 519 6.747125 TCTAAGTGCTTGCAAAAATTCATCA 58.253 32.000 0.00 0.00 0.00 3.07
495 520 7.380536 TCTAAGTGCTTGCAAAAATTCATCAT 58.619 30.769 0.00 0.00 0.00 2.45
496 521 5.856126 AGTGCTTGCAAAAATTCATCATG 57.144 34.783 0.00 0.00 0.00 3.07
497 522 5.543714 AGTGCTTGCAAAAATTCATCATGA 58.456 33.333 0.00 0.00 0.00 3.07
498 523 5.992829 AGTGCTTGCAAAAATTCATCATGAA 59.007 32.000 1.59 1.59 41.09 2.57
499 524 6.483974 AGTGCTTGCAAAAATTCATCATGAAA 59.516 30.769 3.63 0.00 40.12 2.69
500 525 7.174253 AGTGCTTGCAAAAATTCATCATGAAAT 59.826 29.630 3.63 0.00 40.12 2.17
501 526 7.480542 GTGCTTGCAAAAATTCATCATGAAATC 59.519 33.333 3.63 0.00 40.12 2.17
502 527 7.173390 TGCTTGCAAAAATTCATCATGAAATCA 59.827 29.630 3.63 0.00 40.12 2.57
503 528 7.480542 GCTTGCAAAAATTCATCATGAAATCAC 59.519 33.333 3.63 0.00 40.12 3.06
504 529 7.964604 TGCAAAAATTCATCATGAAATCACA 57.035 28.000 3.63 0.00 40.12 3.58
505 530 8.554835 TGCAAAAATTCATCATGAAATCACAT 57.445 26.923 3.63 0.00 40.12 3.21
506 531 9.004717 TGCAAAAATTCATCATGAAATCACATT 57.995 25.926 3.63 0.00 40.12 2.71
507 532 9.485591 GCAAAAATTCATCATGAAATCACATTC 57.514 29.630 3.63 0.00 40.12 2.67
508 533 9.982291 CAAAAATTCATCATGAAATCACATTCC 57.018 29.630 3.63 0.00 40.12 3.01
509 534 9.953565 AAAAATTCATCATGAAATCACATTCCT 57.046 25.926 3.63 0.00 40.12 3.36
510 535 8.942338 AAATTCATCATGAAATCACATTCCTG 57.058 30.769 3.63 0.00 40.12 3.86
511 536 7.655521 ATTCATCATGAAATCACATTCCTGT 57.344 32.000 3.63 0.00 40.12 4.00
512 537 8.756486 ATTCATCATGAAATCACATTCCTGTA 57.244 30.769 3.63 0.00 40.12 2.74
513 538 8.578448 TTCATCATGAAATCACATTCCTGTAA 57.422 30.769 0.00 0.00 32.71 2.41
514 539 8.217131 TCATCATGAAATCACATTCCTGTAAG 57.783 34.615 0.00 0.00 33.14 2.34
515 540 6.441093 TCATGAAATCACATTCCTGTAAGC 57.559 37.500 0.00 0.00 33.14 3.09
516 541 4.944962 TGAAATCACATTCCTGTAAGCG 57.055 40.909 0.00 0.00 33.14 4.68
517 542 4.323417 TGAAATCACATTCCTGTAAGCGT 58.677 39.130 0.00 0.00 33.14 5.07
518 543 4.154015 TGAAATCACATTCCTGTAAGCGTG 59.846 41.667 0.00 0.00 33.14 5.34
519 544 3.610040 ATCACATTCCTGTAAGCGTGA 57.390 42.857 0.00 0.00 37.66 4.35
520 545 2.683968 TCACATTCCTGTAAGCGTGAC 58.316 47.619 0.00 0.00 31.74 3.67
521 546 2.036604 TCACATTCCTGTAAGCGTGACA 59.963 45.455 0.00 0.00 31.74 3.58
522 547 2.805671 CACATTCCTGTAAGCGTGACAA 59.194 45.455 0.00 0.00 33.14 3.18
523 548 3.249799 CACATTCCTGTAAGCGTGACAAA 59.750 43.478 0.00 0.00 33.14 2.83
524 549 3.880490 ACATTCCTGTAAGCGTGACAAAA 59.120 39.130 0.00 0.00 32.49 2.44
525 550 4.024048 ACATTCCTGTAAGCGTGACAAAAG 60.024 41.667 0.00 0.00 32.49 2.27
526 551 3.462483 TCCTGTAAGCGTGACAAAAGA 57.538 42.857 0.00 0.00 0.00 2.52
527 552 3.799366 TCCTGTAAGCGTGACAAAAGAA 58.201 40.909 0.00 0.00 0.00 2.52
528 553 4.193090 TCCTGTAAGCGTGACAAAAGAAA 58.807 39.130 0.00 0.00 0.00 2.52
529 554 4.636648 TCCTGTAAGCGTGACAAAAGAAAA 59.363 37.500 0.00 0.00 0.00 2.29
530 555 5.124138 TCCTGTAAGCGTGACAAAAGAAAAA 59.876 36.000 0.00 0.00 0.00 1.94
531 556 5.229260 CCTGTAAGCGTGACAAAAGAAAAAC 59.771 40.000 0.00 0.00 0.00 2.43
532 557 5.700846 TGTAAGCGTGACAAAAGAAAAACA 58.299 33.333 0.00 0.00 0.00 2.83
533 558 6.150318 TGTAAGCGTGACAAAAGAAAAACAA 58.850 32.000 0.00 0.00 0.00 2.83
534 559 6.641314 TGTAAGCGTGACAAAAGAAAAACAAA 59.359 30.769 0.00 0.00 0.00 2.83
535 560 6.720012 AAGCGTGACAAAAGAAAAACAAAT 57.280 29.167 0.00 0.00 0.00 2.32
536 561 6.720012 AGCGTGACAAAAGAAAAACAAATT 57.280 29.167 0.00 0.00 0.00 1.82
537 562 6.761117 AGCGTGACAAAAGAAAAACAAATTC 58.239 32.000 0.00 0.00 0.00 2.17
538 563 6.367422 AGCGTGACAAAAGAAAAACAAATTCA 59.633 30.769 0.00 0.00 0.00 2.57
539 564 6.678245 GCGTGACAAAAGAAAAACAAATTCAG 59.322 34.615 0.00 0.00 0.00 3.02
540 565 6.678245 CGTGACAAAAGAAAAACAAATTCAGC 59.322 34.615 0.00 0.00 0.00 4.26
541 566 6.960992 GTGACAAAAGAAAAACAAATTCAGCC 59.039 34.615 0.00 0.00 0.00 4.85
542 567 6.878389 TGACAAAAGAAAAACAAATTCAGCCT 59.122 30.769 0.00 0.00 0.00 4.58
543 568 7.064490 TGACAAAAGAAAAACAAATTCAGCCTC 59.936 33.333 0.00 0.00 0.00 4.70
544 569 6.316140 ACAAAAGAAAAACAAATTCAGCCTCC 59.684 34.615 0.00 0.00 0.00 4.30
545 570 5.612725 AAGAAAAACAAATTCAGCCTCCA 57.387 34.783 0.00 0.00 0.00 3.86
546 571 5.612725 AGAAAAACAAATTCAGCCTCCAA 57.387 34.783 0.00 0.00 0.00 3.53
547 572 5.988287 AGAAAAACAAATTCAGCCTCCAAA 58.012 33.333 0.00 0.00 0.00 3.28
548 573 6.413892 AGAAAAACAAATTCAGCCTCCAAAA 58.586 32.000 0.00 0.00 0.00 2.44
549 574 7.056006 AGAAAAACAAATTCAGCCTCCAAAAT 58.944 30.769 0.00 0.00 0.00 1.82
550 575 6.622833 AAAACAAATTCAGCCTCCAAAATG 57.377 33.333 0.00 0.00 0.00 2.32
551 576 3.667360 ACAAATTCAGCCTCCAAAATGC 58.333 40.909 0.00 0.00 0.00 3.56
552 577 3.325716 ACAAATTCAGCCTCCAAAATGCT 59.674 39.130 0.00 0.00 35.25 3.79
553 578 4.202388 ACAAATTCAGCCTCCAAAATGCTT 60.202 37.500 0.00 0.00 31.77 3.91
554 579 4.628963 AATTCAGCCTCCAAAATGCTTT 57.371 36.364 0.00 0.00 31.77 3.51
555 580 4.628963 ATTCAGCCTCCAAAATGCTTTT 57.371 36.364 0.00 0.00 31.77 2.27
573 598 6.804677 TGCTTTTGAAAGTAGCATTTTCAGA 58.195 32.000 0.45 4.38 43.22 3.27
574 599 6.919662 TGCTTTTGAAAGTAGCATTTTCAGAG 59.080 34.615 0.45 11.39 43.22 3.35
575 600 6.920210 GCTTTTGAAAGTAGCATTTTCAGAGT 59.080 34.615 5.47 0.00 43.22 3.24
576 601 8.076178 GCTTTTGAAAGTAGCATTTTCAGAGTA 58.924 33.333 5.47 0.00 43.22 2.59
577 602 9.387123 CTTTTGAAAGTAGCATTTTCAGAGTAC 57.613 33.333 9.30 0.00 43.22 2.73
578 603 7.435068 TTGAAAGTAGCATTTTCAGAGTACC 57.565 36.000 9.30 0.00 43.22 3.34
579 604 5.637810 TGAAAGTAGCATTTTCAGAGTACCG 59.362 40.000 6.29 0.00 39.05 4.02
580 605 5.401531 AAGTAGCATTTTCAGAGTACCGA 57.598 39.130 0.00 0.00 0.00 4.69
581 606 5.599999 AGTAGCATTTTCAGAGTACCGAT 57.400 39.130 0.00 0.00 0.00 4.18
582 607 5.978814 AGTAGCATTTTCAGAGTACCGATT 58.021 37.500 0.00 0.00 0.00 3.34
583 608 6.407202 AGTAGCATTTTCAGAGTACCGATTT 58.593 36.000 0.00 0.00 0.00 2.17
584 609 6.879458 AGTAGCATTTTCAGAGTACCGATTTT 59.121 34.615 0.00 0.00 0.00 1.82
585 610 5.942872 AGCATTTTCAGAGTACCGATTTTG 58.057 37.500 0.00 0.00 0.00 2.44
586 611 5.473504 AGCATTTTCAGAGTACCGATTTTGT 59.526 36.000 0.00 0.00 0.00 2.83
587 612 6.016276 AGCATTTTCAGAGTACCGATTTTGTT 60.016 34.615 0.00 0.00 0.00 2.83
588 613 6.640907 GCATTTTCAGAGTACCGATTTTGTTT 59.359 34.615 0.00 0.00 0.00 2.83
589 614 7.169140 GCATTTTCAGAGTACCGATTTTGTTTT 59.831 33.333 0.00 0.00 0.00 2.43
590 615 9.030301 CATTTTCAGAGTACCGATTTTGTTTTT 57.970 29.630 0.00 0.00 0.00 1.94
609 634 2.264005 TTTTTGCCACGCCTTCTAGA 57.736 45.000 0.00 0.00 0.00 2.43
610 635 2.264005 TTTTGCCACGCCTTCTAGAA 57.736 45.000 4.81 4.81 0.00 2.10
611 636 2.264005 TTTGCCACGCCTTCTAGAAA 57.736 45.000 6.63 0.00 0.00 2.52
612 637 2.489938 TTGCCACGCCTTCTAGAAAT 57.510 45.000 6.63 0.00 0.00 2.17
613 638 1.737838 TGCCACGCCTTCTAGAAATG 58.262 50.000 6.63 2.12 0.00 2.32
614 639 1.003118 TGCCACGCCTTCTAGAAATGT 59.997 47.619 6.63 2.59 0.00 2.71
615 640 1.398390 GCCACGCCTTCTAGAAATGTG 59.602 52.381 17.92 17.92 0.00 3.21
616 641 2.935238 GCCACGCCTTCTAGAAATGTGA 60.935 50.000 23.01 0.00 0.00 3.58
617 642 3.535561 CCACGCCTTCTAGAAATGTGAT 58.464 45.455 23.01 7.98 0.00 3.06
618 643 3.941483 CCACGCCTTCTAGAAATGTGATT 59.059 43.478 23.01 3.88 0.00 2.57
619 644 4.396166 CCACGCCTTCTAGAAATGTGATTT 59.604 41.667 23.01 3.35 34.64 2.17
620 645 5.447818 CCACGCCTTCTAGAAATGTGATTTC 60.448 44.000 23.01 0.00 46.90 2.17
634 659 9.519905 GAAATGTGATTTCATGACGAATTTTTG 57.480 29.630 0.00 0.00 46.05 2.44
635 660 6.450845 TGTGATTTCATGACGAATTTTTGC 57.549 33.333 0.00 0.00 32.32 3.68
636 661 5.981915 TGTGATTTCATGACGAATTTTTGCA 59.018 32.000 0.00 0.00 32.32 4.08
637 662 6.478016 TGTGATTTCATGACGAATTTTTGCAA 59.522 30.769 0.00 0.00 32.32 4.08
638 663 7.005380 GTGATTTCATGACGAATTTTTGCAAG 58.995 34.615 0.00 0.00 32.32 4.01
639 664 4.970472 TTCATGACGAATTTTTGCAAGC 57.030 36.364 0.00 0.00 0.00 4.01
640 665 3.974912 TCATGACGAATTTTTGCAAGCA 58.025 36.364 0.00 0.00 0.00 3.91
641 666 3.735240 TCATGACGAATTTTTGCAAGCAC 59.265 39.130 0.00 0.00 0.00 4.40
642 667 3.435105 TGACGAATTTTTGCAAGCACT 57.565 38.095 0.00 0.00 0.00 4.40
643 668 3.779759 TGACGAATTTTTGCAAGCACTT 58.220 36.364 0.00 0.00 0.00 3.16
644 669 4.926244 TGACGAATTTTTGCAAGCACTTA 58.074 34.783 0.00 0.00 0.00 2.24
645 670 5.344066 TGACGAATTTTTGCAAGCACTTAA 58.656 33.333 0.00 0.00 0.00 1.85
646 671 5.807520 TGACGAATTTTTGCAAGCACTTAAA 59.192 32.000 0.00 0.00 0.00 1.52
647 672 6.311445 TGACGAATTTTTGCAAGCACTTAAAA 59.689 30.769 0.00 0.00 0.00 1.52
648 673 6.474364 ACGAATTTTTGCAAGCACTTAAAAC 58.526 32.000 0.00 0.00 0.00 2.43
649 674 6.312672 ACGAATTTTTGCAAGCACTTAAAACT 59.687 30.769 0.00 0.00 0.00 2.66
650 675 7.148490 ACGAATTTTTGCAAGCACTTAAAACTT 60.148 29.630 0.00 0.47 0.00 2.66
651 676 7.691877 CGAATTTTTGCAAGCACTTAAAACTTT 59.308 29.630 0.00 0.00 0.00 2.66
652 677 9.340695 GAATTTTTGCAAGCACTTAAAACTTTT 57.659 25.926 0.00 0.00 0.00 2.27
653 678 8.672214 ATTTTTGCAAGCACTTAAAACTTTTG 57.328 26.923 0.00 0.00 0.00 2.44
654 679 6.793492 TTTGCAAGCACTTAAAACTTTTGT 57.207 29.167 0.00 0.00 0.00 2.83
655 680 6.401955 TTGCAAGCACTTAAAACTTTTGTC 57.598 33.333 0.00 0.00 0.00 3.18
656 681 5.473931 TGCAAGCACTTAAAACTTTTGTCA 58.526 33.333 0.00 0.00 0.00 3.58
657 682 5.928839 TGCAAGCACTTAAAACTTTTGTCAA 59.071 32.000 0.00 0.00 0.00 3.18
658 683 6.593382 TGCAAGCACTTAAAACTTTTGTCAAT 59.407 30.769 0.00 0.00 0.00 2.57
659 684 6.901357 GCAAGCACTTAAAACTTTTGTCAATG 59.099 34.615 0.00 0.00 0.00 2.82
660 685 7.412891 GCAAGCACTTAAAACTTTTGTCAATGT 60.413 33.333 0.00 0.00 0.00 2.71
661 686 8.442384 CAAGCACTTAAAACTTTTGTCAATGTT 58.558 29.630 0.00 0.00 32.90 2.71
662 687 8.546597 AGCACTTAAAACTTTTGTCAATGTTT 57.453 26.923 9.87 9.87 40.32 2.83
663 688 8.655970 AGCACTTAAAACTTTTGTCAATGTTTC 58.344 29.630 13.86 5.09 38.61 2.78
664 689 8.655970 GCACTTAAAACTTTTGTCAATGTTTCT 58.344 29.630 13.86 9.23 38.61 2.52
670 695 9.495572 AAAACTTTTGTCAATGTTTCTACCAAA 57.504 25.926 13.86 0.00 38.61 3.28
671 696 9.495572 AAACTTTTGTCAATGTTTCTACCAAAA 57.504 25.926 9.87 0.00 36.13 2.44
672 697 9.495572 AACTTTTGTCAATGTTTCTACCAAAAA 57.504 25.926 0.00 0.00 28.24 1.94
673 698 9.665719 ACTTTTGTCAATGTTTCTACCAAAAAT 57.334 25.926 0.00 0.00 0.00 1.82
726 751 4.635833 TTTTCGGTTTTACTGTTCACCC 57.364 40.909 0.00 0.00 0.00 4.61
727 752 1.868469 TCGGTTTTACTGTTCACCCG 58.132 50.000 0.00 0.00 35.41 5.28
728 753 1.411977 TCGGTTTTACTGTTCACCCGA 59.588 47.619 0.00 0.00 40.37 5.14
729 754 1.796459 CGGTTTTACTGTTCACCCGAG 59.204 52.381 0.00 0.00 36.12 4.63
730 755 1.534163 GGTTTTACTGTTCACCCGAGC 59.466 52.381 0.00 0.00 0.00 5.03
731 756 2.490991 GTTTTACTGTTCACCCGAGCT 58.509 47.619 0.00 0.00 0.00 4.09
732 757 2.450609 TTTACTGTTCACCCGAGCTC 57.549 50.000 2.73 2.73 0.00 4.09
733 758 1.334160 TTACTGTTCACCCGAGCTCA 58.666 50.000 15.40 0.00 0.00 4.26
734 759 1.557099 TACTGTTCACCCGAGCTCAT 58.443 50.000 15.40 0.00 0.00 2.90
735 760 1.557099 ACTGTTCACCCGAGCTCATA 58.443 50.000 15.40 0.00 0.00 2.15
736 761 2.111384 ACTGTTCACCCGAGCTCATAT 58.889 47.619 15.40 0.00 0.00 1.78
737 762 2.159043 ACTGTTCACCCGAGCTCATATG 60.159 50.000 15.40 8.10 0.00 1.78
738 763 2.101415 CTGTTCACCCGAGCTCATATGA 59.899 50.000 15.40 10.42 0.00 2.15
739 764 2.101415 TGTTCACCCGAGCTCATATGAG 59.899 50.000 25.64 25.64 44.75 2.90
748 773 3.207677 CTCATATGAGCTCGGGTGC 57.792 57.895 19.47 0.00 35.13 5.01
749 774 0.390492 CTCATATGAGCTCGGGTGCA 59.610 55.000 19.47 0.00 35.13 4.57
750 775 0.390492 TCATATGAGCTCGGGTGCAG 59.610 55.000 9.64 0.00 34.99 4.41
751 776 0.390492 CATATGAGCTCGGGTGCAGA 59.610 55.000 9.64 0.00 34.99 4.26
752 777 1.123077 ATATGAGCTCGGGTGCAGAA 58.877 50.000 9.64 0.00 34.99 3.02
753 778 0.901827 TATGAGCTCGGGTGCAGAAA 59.098 50.000 9.64 0.00 34.99 2.52
754 779 0.674895 ATGAGCTCGGGTGCAGAAAC 60.675 55.000 9.64 0.00 34.99 2.78
755 780 1.004440 GAGCTCGGGTGCAGAAACT 60.004 57.895 0.00 0.00 34.99 2.66
756 781 1.004440 AGCTCGGGTGCAGAAACTC 60.004 57.895 0.00 0.00 34.99 3.01
757 782 2.035442 GCTCGGGTGCAGAAACTCC 61.035 63.158 0.00 0.00 0.00 3.85
758 783 1.371183 CTCGGGTGCAGAAACTCCA 59.629 57.895 0.00 0.00 0.00 3.86
759 784 0.951040 CTCGGGTGCAGAAACTCCAC 60.951 60.000 0.00 0.00 0.00 4.02
760 785 2.317609 CGGGTGCAGAAACTCCACG 61.318 63.158 0.00 0.00 0.00 4.94
761 786 1.227853 GGGTGCAGAAACTCCACGT 60.228 57.895 0.00 0.00 0.00 4.49
762 787 1.228657 GGGTGCAGAAACTCCACGTC 61.229 60.000 0.00 0.00 0.00 4.34
763 788 1.228657 GGTGCAGAAACTCCACGTCC 61.229 60.000 0.00 0.00 0.00 4.79
764 789 0.531974 GTGCAGAAACTCCACGTCCA 60.532 55.000 0.00 0.00 0.00 4.02
765 790 0.179234 TGCAGAAACTCCACGTCCAA 59.821 50.000 0.00 0.00 0.00 3.53
766 791 0.586802 GCAGAAACTCCACGTCCAAC 59.413 55.000 0.00 0.00 0.00 3.77
767 792 1.810412 GCAGAAACTCCACGTCCAACT 60.810 52.381 0.00 0.00 0.00 3.16
768 793 1.867233 CAGAAACTCCACGTCCAACTG 59.133 52.381 0.00 0.00 0.00 3.16
1541 1598 9.480053 CCAGTTTACATTGTCTTGATTTCAATT 57.520 29.630 0.00 0.00 35.02 2.32
1620 1678 2.949714 AAAACACGATCGAGCACAAG 57.050 45.000 24.34 4.77 0.00 3.16
1793 1854 0.384353 GCGAGACTTCCAAACAACGC 60.384 55.000 0.00 0.00 38.23 4.84
1795 1856 1.332904 CGAGACTTCCAAACAACGCAC 60.333 52.381 0.00 0.00 0.00 5.34
1808 1870 2.504681 CGCACGGAAAGCATTGCC 60.505 61.111 4.70 0.00 0.00 4.52
1824 1886 4.559300 GCATTGCCTTGAACACAGTGTATT 60.559 41.667 6.63 0.00 0.00 1.89
1900 1964 5.643379 TTTTAAAGGCAATCGAGCAATCT 57.357 34.783 0.00 0.00 35.83 2.40
1953 2017 1.536149 GTGTTAGAGCACGTCTAGCG 58.464 55.000 5.24 5.24 40.90 4.26
1955 2019 0.731417 GTTAGAGCACGTCTAGCGGA 59.269 55.000 10.53 0.00 46.52 5.54
1959 2023 3.450115 GCACGTCTAGCGGACCCT 61.450 66.667 10.53 0.00 46.52 4.34
1964 2028 2.620115 CACGTCTAGCGGACCCTTTATA 59.380 50.000 10.53 0.00 46.52 0.98
1966 2030 3.505293 ACGTCTAGCGGACCCTTTATATC 59.495 47.826 10.53 0.00 46.52 1.63
1967 2031 3.425892 CGTCTAGCGGACCCTTTATATCG 60.426 52.174 7.16 0.00 41.64 2.92
1972 2036 2.353803 GCGGACCCTTTATATCGCAGAT 60.354 50.000 0.00 0.00 45.12 2.90
1981 2045 6.926272 CCCTTTATATCGCAGATCCTTATAGC 59.074 42.308 0.00 0.00 45.12 2.97
1984 2048 3.496898 CGCAGATCCTTATAGCGCA 57.503 52.632 11.47 0.00 41.95 6.09
1995 2059 5.666462 TCCTTATAGCGCATTTACAGTTCA 58.334 37.500 11.47 0.00 0.00 3.18
1997 2061 3.925688 ATAGCGCATTTACAGTTCACG 57.074 42.857 11.47 0.00 0.00 4.35
1999 2063 2.346803 AGCGCATTTACAGTTCACGAT 58.653 42.857 11.47 0.00 0.00 3.73
2000 2064 3.517602 AGCGCATTTACAGTTCACGATA 58.482 40.909 11.47 0.00 0.00 2.92
2001 2065 3.306166 AGCGCATTTACAGTTCACGATAC 59.694 43.478 11.47 0.00 0.00 2.24
2002 2066 3.061563 GCGCATTTACAGTTCACGATACA 59.938 43.478 0.30 0.00 0.00 2.29
2003 2067 4.434989 GCGCATTTACAGTTCACGATACAA 60.435 41.667 0.30 0.00 0.00 2.41
2004 2068 5.248087 CGCATTTACAGTTCACGATACAAG 58.752 41.667 0.00 0.00 0.00 3.16
2017 2092 2.222508 CGATACAAGTCGAAAACAGCCG 60.223 50.000 0.00 0.00 44.06 5.52
2028 2103 1.498865 AAACAGCCGCGACAGAACAG 61.499 55.000 8.23 0.00 0.00 3.16
2031 2106 3.782244 GCCGCGACAGAACAGCAG 61.782 66.667 8.23 0.00 0.00 4.24
2034 2109 3.782244 GCGACAGAACAGCAGCCG 61.782 66.667 0.00 0.00 0.00 5.52
2040 2115 2.541762 GACAGAACAGCAGCCGAATATC 59.458 50.000 0.00 0.00 0.00 1.63
2047 2122 0.814010 GCAGCCGAATATCAACCCGT 60.814 55.000 0.00 0.00 0.00 5.28
2048 2123 0.937304 CAGCCGAATATCAACCCGTG 59.063 55.000 0.00 0.00 0.00 4.94
2055 2130 5.220892 GCCGAATATCAACCCGTGAAATTTA 60.221 40.000 0.00 0.00 40.50 1.40
2056 2131 6.678409 GCCGAATATCAACCCGTGAAATTTAA 60.678 38.462 0.00 0.00 40.50 1.52
2068 2143 9.581099 ACCCGTGAAATTTAAAATCATACATTC 57.419 29.630 9.47 0.00 0.00 2.67
2071 2146 7.985051 CGTGAAATTTAAAATCATACATTCGCG 59.015 33.333 0.00 0.00 0.00 5.87
2075 2150 6.788766 TTTAAAATCATACATTCGCGCAAG 57.211 33.333 8.75 0.00 43.44 4.01
2150 2226 9.394477 GTCATACAAAGTAGAATTTTGACAACC 57.606 33.333 4.87 0.00 38.55 3.77
2171 2247 0.839946 ATATTTGGAGGAGCAGGCGT 59.160 50.000 0.00 0.00 0.00 5.68
2185 2261 0.899717 AGGCGTCACCGTAACCCTAA 60.900 55.000 0.00 0.00 46.52 2.69
2194 2270 6.073331 CGTCACCGTAACCCTAATTACAAAAA 60.073 38.462 0.00 0.00 35.18 1.94
2203 2279 5.963865 ACCCTAATTACAAAAATGGGCTCAT 59.036 36.000 0.00 0.00 36.78 2.90
2222 2298 4.883354 GGAGCCAGGGGGATTGCG 62.883 72.222 0.00 0.00 35.59 4.85
2268 2358 4.176851 GGAGACGAGGTCGACGCC 62.177 72.222 9.92 7.63 44.23 5.68
2287 2383 0.247736 CGACCTGCTTCTTGGCTACT 59.752 55.000 0.00 0.00 0.00 2.57
2310 2406 1.308069 CGCCACTCTTCCATGTTGGG 61.308 60.000 0.00 0.00 38.32 4.12
2312 2408 0.251297 CCACTCTTCCATGTTGGGCA 60.251 55.000 0.00 0.00 38.32 5.36
2324 2420 2.250939 TTGGGCACGAACTCTTGCG 61.251 57.895 2.52 0.00 41.40 4.85
2331 2427 2.733593 GAACTCTTGCGCCGTCGT 60.734 61.111 4.18 0.00 38.14 4.34
2343 2439 2.202797 CGTCGTGATCCCCTGCTG 60.203 66.667 0.00 0.00 0.00 4.41
2344 2440 2.187946 GTCGTGATCCCCTGCTGG 59.812 66.667 1.89 1.89 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.481276 GGAGCAACCTTGTTGAAACCAC 60.481 50.000 10.94 0.00 35.41 4.16
55 56 3.304391 GCCGTGAGCAAAAGTTATTGTCA 60.304 43.478 0.00 0.00 42.97 3.58
61 62 1.572447 GCGCCGTGAGCAAAAGTTA 59.428 52.632 0.00 0.00 44.04 2.24
63 64 4.012895 CGCGCCGTGAGCAAAAGT 62.013 61.111 0.00 0.00 44.04 2.66
87 88 1.347817 CGTCTTCCTTCTGCGTCAGC 61.348 60.000 2.45 0.00 45.41 4.26
92 93 2.383527 GCACCGTCTTCCTTCTGCG 61.384 63.158 0.00 0.00 0.00 5.18
203 209 4.743493 TGAAGAAAAAGTTGCGCTCTTTT 58.257 34.783 25.81 25.81 43.86 2.27
209 215 2.192624 TGCTTGAAGAAAAAGTTGCGC 58.807 42.857 0.00 0.00 0.00 6.09
259 265 0.386605 CTTTAAACGCGCACATGCCA 60.387 50.000 5.73 0.00 37.91 4.92
305 312 0.536460 AAACCGTCTGTTTCGCCCAT 60.536 50.000 0.00 0.00 43.74 4.00
322 329 5.527214 TGAGTCGATCTCTTTCTTTTGCAAA 59.473 36.000 8.05 8.05 43.13 3.68
337 344 1.698165 TTCGCAGTTGTGAGTCGATC 58.302 50.000 0.00 0.00 35.80 3.69
358 383 1.743252 CTCGGGAGCAGAAAGGCAC 60.743 63.158 0.00 0.00 35.83 5.01
377 402 2.414481 CTGTTCACCGAGCTCAAATGAG 59.586 50.000 15.40 6.05 44.75 2.90
378 403 2.224281 ACTGTTCACCGAGCTCAAATGA 60.224 45.455 15.40 10.78 0.00 2.57
379 404 2.146342 ACTGTTCACCGAGCTCAAATG 58.854 47.619 15.40 8.47 0.00 2.32
380 405 2.550830 ACTGTTCACCGAGCTCAAAT 57.449 45.000 15.40 0.00 0.00 2.32
381 406 3.462483 TTACTGTTCACCGAGCTCAAA 57.538 42.857 15.40 0.00 0.00 2.69
382 407 3.462483 TTTACTGTTCACCGAGCTCAA 57.538 42.857 15.40 0.00 0.00 3.02
383 408 3.462483 TTTTACTGTTCACCGAGCTCA 57.538 42.857 15.40 0.00 0.00 4.26
384 409 3.060895 CGATTTTACTGTTCACCGAGCTC 59.939 47.826 2.73 2.73 0.00 4.09
385 410 2.993899 CGATTTTACTGTTCACCGAGCT 59.006 45.455 0.00 0.00 0.00 4.09
386 411 2.991190 TCGATTTTACTGTTCACCGAGC 59.009 45.455 0.00 0.00 0.00 5.03
387 412 5.585500 TTTCGATTTTACTGTTCACCGAG 57.415 39.130 0.00 0.00 0.00 4.63
388 413 5.987777 TTTTCGATTTTACTGTTCACCGA 57.012 34.783 0.00 0.00 0.00 4.69
441 466 6.729690 TGTCAATGTTTCTCTGGGATTTTT 57.270 33.333 0.00 0.00 0.00 1.94
442 467 6.729690 TTGTCAATGTTTCTCTGGGATTTT 57.270 33.333 0.00 0.00 0.00 1.82
443 468 6.729690 TTTGTCAATGTTTCTCTGGGATTT 57.270 33.333 0.00 0.00 0.00 2.17
444 469 6.324770 ACTTTTGTCAATGTTTCTCTGGGATT 59.675 34.615 0.00 0.00 0.00 3.01
445 470 5.835280 ACTTTTGTCAATGTTTCTCTGGGAT 59.165 36.000 0.00 0.00 0.00 3.85
446 471 5.200483 ACTTTTGTCAATGTTTCTCTGGGA 58.800 37.500 0.00 0.00 0.00 4.37
447 472 5.520376 ACTTTTGTCAATGTTTCTCTGGG 57.480 39.130 0.00 0.00 0.00 4.45
448 473 6.799512 AGAACTTTTGTCAATGTTTCTCTGG 58.200 36.000 6.10 0.00 31.96 3.86
449 474 9.443283 CTTAGAACTTTTGTCAATGTTTCTCTG 57.557 33.333 6.42 0.64 31.96 3.35
450 475 9.178758 ACTTAGAACTTTTGTCAATGTTTCTCT 57.821 29.630 6.42 3.36 31.96 3.10
451 476 9.226345 CACTTAGAACTTTTGTCAATGTTTCTC 57.774 33.333 6.42 0.00 31.96 2.87
452 477 7.702348 GCACTTAGAACTTTTGTCAATGTTTCT 59.298 33.333 6.10 6.96 31.96 2.52
453 478 7.702348 AGCACTTAGAACTTTTGTCAATGTTTC 59.298 33.333 6.10 1.04 31.96 2.78
454 479 7.547227 AGCACTTAGAACTTTTGTCAATGTTT 58.453 30.769 6.10 0.00 31.96 2.83
455 480 7.100458 AGCACTTAGAACTTTTGTCAATGTT 57.900 32.000 4.72 4.72 33.94 2.71
456 481 6.699575 AGCACTTAGAACTTTTGTCAATGT 57.300 33.333 0.00 0.00 0.00 2.71
457 482 6.074676 GCAAGCACTTAGAACTTTTGTCAATG 60.075 38.462 0.00 0.00 0.00 2.82
458 483 5.979517 GCAAGCACTTAGAACTTTTGTCAAT 59.020 36.000 0.00 0.00 0.00 2.57
459 484 5.105957 TGCAAGCACTTAGAACTTTTGTCAA 60.106 36.000 0.00 0.00 0.00 3.18
460 485 4.397730 TGCAAGCACTTAGAACTTTTGTCA 59.602 37.500 0.00 0.00 0.00 3.58
461 486 4.920376 TGCAAGCACTTAGAACTTTTGTC 58.080 39.130 0.00 0.00 0.00 3.18
462 487 4.981806 TGCAAGCACTTAGAACTTTTGT 57.018 36.364 0.00 0.00 0.00 2.83
463 488 6.645700 TTTTGCAAGCACTTAGAACTTTTG 57.354 33.333 0.00 0.00 0.00 2.44
464 489 7.848223 ATTTTTGCAAGCACTTAGAACTTTT 57.152 28.000 0.00 0.00 0.00 2.27
465 490 7.548780 TGAATTTTTGCAAGCACTTAGAACTTT 59.451 29.630 0.00 0.00 0.00 2.66
466 491 7.041107 TGAATTTTTGCAAGCACTTAGAACTT 58.959 30.769 0.00 0.00 0.00 2.66
467 492 6.572519 TGAATTTTTGCAAGCACTTAGAACT 58.427 32.000 0.00 0.00 0.00 3.01
468 493 6.826893 TGAATTTTTGCAAGCACTTAGAAC 57.173 33.333 0.00 0.00 0.00 3.01
469 494 7.208777 TGATGAATTTTTGCAAGCACTTAGAA 58.791 30.769 0.00 0.00 0.00 2.10
470 495 6.747125 TGATGAATTTTTGCAAGCACTTAGA 58.253 32.000 0.00 0.00 0.00 2.10
471 496 7.329962 TCATGATGAATTTTTGCAAGCACTTAG 59.670 33.333 0.00 0.00 0.00 2.18
472 497 7.153315 TCATGATGAATTTTTGCAAGCACTTA 58.847 30.769 0.00 0.00 0.00 2.24
473 498 5.992829 TCATGATGAATTTTTGCAAGCACTT 59.007 32.000 0.00 0.00 0.00 3.16
474 499 5.543714 TCATGATGAATTTTTGCAAGCACT 58.456 33.333 0.00 0.00 0.00 4.40
475 500 5.849357 TCATGATGAATTTTTGCAAGCAC 57.151 34.783 0.00 0.00 0.00 4.40
476 501 6.862711 TTTCATGATGAATTTTTGCAAGCA 57.137 29.167 8.90 0.00 36.11 3.91
477 502 7.480542 GTGATTTCATGATGAATTTTTGCAAGC 59.519 33.333 8.90 0.00 36.11 4.01
478 503 8.499967 TGTGATTTCATGATGAATTTTTGCAAG 58.500 29.630 8.90 0.00 36.11 4.01
479 504 8.379457 TGTGATTTCATGATGAATTTTTGCAA 57.621 26.923 8.90 0.00 36.11 4.08
480 505 7.964604 TGTGATTTCATGATGAATTTTTGCA 57.035 28.000 8.90 1.87 36.11 4.08
481 506 9.485591 GAATGTGATTTCATGATGAATTTTTGC 57.514 29.630 8.90 0.00 36.11 3.68
482 507 9.982291 GGAATGTGATTTCATGATGAATTTTTG 57.018 29.630 8.90 0.00 36.11 2.44
483 508 9.953565 AGGAATGTGATTTCATGATGAATTTTT 57.046 25.926 8.90 0.00 36.11 1.94
484 509 9.378551 CAGGAATGTGATTTCATGATGAATTTT 57.621 29.630 8.90 0.00 39.18 1.82
485 510 8.537016 ACAGGAATGTGATTTCATGATGAATTT 58.463 29.630 8.90 0.00 39.18 1.82
486 511 8.074613 ACAGGAATGTGATTTCATGATGAATT 57.925 30.769 8.90 5.47 39.18 2.17
487 512 7.655521 ACAGGAATGTGATTTCATGATGAAT 57.344 32.000 8.90 0.00 39.18 2.57
488 513 8.578448 TTACAGGAATGTGATTTCATGATGAA 57.422 30.769 3.29 3.29 39.18 2.57
489 514 7.201758 GCTTACAGGAATGTGATTTCATGATGA 60.202 37.037 0.00 0.00 39.18 2.92
490 515 6.916387 GCTTACAGGAATGTGATTTCATGATG 59.084 38.462 0.00 0.00 39.18 3.07
491 516 6.238566 CGCTTACAGGAATGTGATTTCATGAT 60.239 38.462 0.00 0.00 39.18 2.45
492 517 5.065090 CGCTTACAGGAATGTGATTTCATGA 59.935 40.000 5.92 0.00 39.18 3.07
493 518 5.163723 ACGCTTACAGGAATGTGATTTCATG 60.164 40.000 0.00 0.00 41.77 3.07
494 519 4.943705 ACGCTTACAGGAATGTGATTTCAT 59.056 37.500 0.00 0.00 0.00 2.57
495 520 4.154015 CACGCTTACAGGAATGTGATTTCA 59.846 41.667 0.00 0.00 0.00 2.69
496 521 4.391830 TCACGCTTACAGGAATGTGATTTC 59.608 41.667 0.00 0.00 31.12 2.17
497 522 4.154195 GTCACGCTTACAGGAATGTGATTT 59.846 41.667 4.37 0.00 35.79 2.17
498 523 3.684788 GTCACGCTTACAGGAATGTGATT 59.315 43.478 4.37 0.00 35.79 2.57
499 524 3.262420 GTCACGCTTACAGGAATGTGAT 58.738 45.455 4.37 0.00 35.79 3.06
500 525 2.036604 TGTCACGCTTACAGGAATGTGA 59.963 45.455 0.00 0.00 32.72 3.58
501 526 2.412870 TGTCACGCTTACAGGAATGTG 58.587 47.619 0.00 0.00 0.00 3.21
502 527 2.831685 TGTCACGCTTACAGGAATGT 57.168 45.000 0.00 0.00 0.00 2.71
503 528 4.213270 TCTTTTGTCACGCTTACAGGAATG 59.787 41.667 0.00 0.00 0.00 2.67
504 529 4.385825 TCTTTTGTCACGCTTACAGGAAT 58.614 39.130 0.00 0.00 0.00 3.01
505 530 3.799366 TCTTTTGTCACGCTTACAGGAA 58.201 40.909 0.00 0.00 0.00 3.36
506 531 3.462483 TCTTTTGTCACGCTTACAGGA 57.538 42.857 0.00 0.00 0.00 3.86
507 532 4.545823 TTTCTTTTGTCACGCTTACAGG 57.454 40.909 0.00 0.00 0.00 4.00
508 533 5.797934 TGTTTTTCTTTTGTCACGCTTACAG 59.202 36.000 0.00 0.00 0.00 2.74
509 534 5.700846 TGTTTTTCTTTTGTCACGCTTACA 58.299 33.333 0.00 0.00 0.00 2.41
510 535 6.620253 TTGTTTTTCTTTTGTCACGCTTAC 57.380 33.333 0.00 0.00 0.00 2.34
511 536 7.820044 ATTTGTTTTTCTTTTGTCACGCTTA 57.180 28.000 0.00 0.00 0.00 3.09
512 537 6.720012 ATTTGTTTTTCTTTTGTCACGCTT 57.280 29.167 0.00 0.00 0.00 4.68
513 538 6.367422 TGAATTTGTTTTTCTTTTGTCACGCT 59.633 30.769 0.00 0.00 0.00 5.07
514 539 6.529696 TGAATTTGTTTTTCTTTTGTCACGC 58.470 32.000 0.00 0.00 0.00 5.34
515 540 6.678245 GCTGAATTTGTTTTTCTTTTGTCACG 59.322 34.615 0.00 0.00 0.00 4.35
516 541 6.960992 GGCTGAATTTGTTTTTCTTTTGTCAC 59.039 34.615 0.00 0.00 0.00 3.67
517 542 6.878389 AGGCTGAATTTGTTTTTCTTTTGTCA 59.122 30.769 0.00 0.00 0.00 3.58
518 543 7.307493 AGGCTGAATTTGTTTTTCTTTTGTC 57.693 32.000 0.00 0.00 0.00 3.18
519 544 6.316140 GGAGGCTGAATTTGTTTTTCTTTTGT 59.684 34.615 0.00 0.00 0.00 2.83
520 545 6.315891 TGGAGGCTGAATTTGTTTTTCTTTTG 59.684 34.615 0.00 0.00 0.00 2.44
521 546 6.413892 TGGAGGCTGAATTTGTTTTTCTTTT 58.586 32.000 0.00 0.00 0.00 2.27
522 547 5.988287 TGGAGGCTGAATTTGTTTTTCTTT 58.012 33.333 0.00 0.00 0.00 2.52
523 548 5.612725 TGGAGGCTGAATTTGTTTTTCTT 57.387 34.783 0.00 0.00 0.00 2.52
524 549 5.612725 TTGGAGGCTGAATTTGTTTTTCT 57.387 34.783 0.00 0.00 0.00 2.52
525 550 6.676237 TTTTGGAGGCTGAATTTGTTTTTC 57.324 33.333 0.00 0.00 0.00 2.29
526 551 6.459985 GCATTTTGGAGGCTGAATTTGTTTTT 60.460 34.615 0.00 0.00 0.00 1.94
527 552 5.008911 GCATTTTGGAGGCTGAATTTGTTTT 59.991 36.000 0.00 0.00 0.00 2.43
528 553 4.516321 GCATTTTGGAGGCTGAATTTGTTT 59.484 37.500 0.00 0.00 0.00 2.83
529 554 4.067192 GCATTTTGGAGGCTGAATTTGTT 58.933 39.130 0.00 0.00 0.00 2.83
530 555 3.325716 AGCATTTTGGAGGCTGAATTTGT 59.674 39.130 0.00 0.00 36.34 2.83
531 556 3.934068 AGCATTTTGGAGGCTGAATTTG 58.066 40.909 0.00 0.00 36.34 2.32
532 557 4.628963 AAGCATTTTGGAGGCTGAATTT 57.371 36.364 0.00 0.00 38.04 1.82
533 558 4.628963 AAAGCATTTTGGAGGCTGAATT 57.371 36.364 0.00 0.00 31.62 2.17
550 575 6.920210 ACTCTGAAAATGCTACTTTCAAAAGC 59.080 34.615 2.43 0.00 41.10 3.51
551 576 9.387123 GTACTCTGAAAATGCTACTTTCAAAAG 57.613 33.333 0.97 0.97 41.10 2.27
552 577 8.349983 GGTACTCTGAAAATGCTACTTTCAAAA 58.650 33.333 8.91 2.31 41.10 2.44
553 578 7.307751 CGGTACTCTGAAAATGCTACTTTCAAA 60.308 37.037 8.91 0.00 41.10 2.69
554 579 6.147164 CGGTACTCTGAAAATGCTACTTTCAA 59.853 38.462 8.91 2.50 41.10 2.69
555 580 5.637810 CGGTACTCTGAAAATGCTACTTTCA 59.362 40.000 7.77 7.77 39.79 2.69
556 581 5.867716 TCGGTACTCTGAAAATGCTACTTTC 59.132 40.000 0.00 0.00 34.09 2.62
557 582 5.790593 TCGGTACTCTGAAAATGCTACTTT 58.209 37.500 0.00 0.00 0.00 2.66
558 583 5.401531 TCGGTACTCTGAAAATGCTACTT 57.598 39.130 0.00 0.00 0.00 2.24
559 584 5.599999 ATCGGTACTCTGAAAATGCTACT 57.400 39.130 0.00 0.00 32.29 2.57
560 585 6.663944 AAATCGGTACTCTGAAAATGCTAC 57.336 37.500 0.00 0.00 32.29 3.58
561 586 6.653320 ACAAAATCGGTACTCTGAAAATGCTA 59.347 34.615 0.00 0.00 32.29 3.49
562 587 5.473504 ACAAAATCGGTACTCTGAAAATGCT 59.526 36.000 0.00 0.00 32.29 3.79
563 588 5.699839 ACAAAATCGGTACTCTGAAAATGC 58.300 37.500 0.00 0.00 32.29 3.56
564 589 8.574196 AAAACAAAATCGGTACTCTGAAAATG 57.426 30.769 0.00 0.00 32.29 2.32
590 615 2.264005 TCTAGAAGGCGTGGCAAAAA 57.736 45.000 0.00 0.00 0.00 1.94
591 616 2.264005 TTCTAGAAGGCGTGGCAAAA 57.736 45.000 0.00 0.00 0.00 2.44
592 617 2.264005 TTTCTAGAAGGCGTGGCAAA 57.736 45.000 5.12 0.00 0.00 3.68
593 618 2.083774 CATTTCTAGAAGGCGTGGCAA 58.916 47.619 5.12 0.00 0.00 4.52
594 619 1.003118 ACATTTCTAGAAGGCGTGGCA 59.997 47.619 5.12 0.00 0.00 4.92
595 620 1.398390 CACATTTCTAGAAGGCGTGGC 59.602 52.381 17.07 0.00 0.00 5.01
596 621 2.972625 TCACATTTCTAGAAGGCGTGG 58.027 47.619 21.32 7.48 0.00 4.94
597 622 5.122239 TGAAATCACATTTCTAGAAGGCGTG 59.878 40.000 18.08 18.08 46.71 5.34
598 623 5.245531 TGAAATCACATTTCTAGAAGGCGT 58.754 37.500 5.12 1.78 46.71 5.68
599 624 5.801350 TGAAATCACATTTCTAGAAGGCG 57.199 39.130 5.12 1.16 46.71 5.52
600 625 7.192232 GTCATGAAATCACATTTCTAGAAGGC 58.808 38.462 5.12 0.00 46.71 4.35
601 626 7.278646 TCGTCATGAAATCACATTTCTAGAAGG 59.721 37.037 5.12 5.08 46.71 3.46
602 627 8.189709 TCGTCATGAAATCACATTTCTAGAAG 57.810 34.615 5.12 0.00 46.71 2.85
603 628 8.546597 TTCGTCATGAAATCACATTTCTAGAA 57.453 30.769 0.00 0.00 46.71 2.10
604 629 8.722480 ATTCGTCATGAAATCACATTTCTAGA 57.278 30.769 0.00 0.00 46.71 2.43
605 630 9.778993 AAATTCGTCATGAAATCACATTTCTAG 57.221 29.630 0.00 3.72 46.71 2.43
607 632 9.480053 AAAAATTCGTCATGAAATCACATTTCT 57.520 25.926 0.00 0.00 46.71 2.52
608 633 9.519905 CAAAAATTCGTCATGAAATCACATTTC 57.480 29.630 0.00 2.55 46.75 2.17
609 634 8.011106 GCAAAAATTCGTCATGAAATCACATTT 58.989 29.630 0.00 0.00 40.71 2.32
610 635 7.171167 TGCAAAAATTCGTCATGAAATCACATT 59.829 29.630 0.00 0.00 40.71 2.71
611 636 6.645827 TGCAAAAATTCGTCATGAAATCACAT 59.354 30.769 0.00 0.00 40.71 3.21
612 637 5.981915 TGCAAAAATTCGTCATGAAATCACA 59.018 32.000 0.00 0.00 40.71 3.58
613 638 6.450845 TGCAAAAATTCGTCATGAAATCAC 57.549 33.333 0.00 0.00 40.71 3.06
614 639 6.346758 GCTTGCAAAAATTCGTCATGAAATCA 60.347 34.615 0.00 0.00 40.71 2.57
615 640 6.011277 GCTTGCAAAAATTCGTCATGAAATC 58.989 36.000 0.00 0.00 40.71 2.17
616 641 5.466058 TGCTTGCAAAAATTCGTCATGAAAT 59.534 32.000 0.00 0.00 40.71 2.17
617 642 4.807834 TGCTTGCAAAAATTCGTCATGAAA 59.192 33.333 0.00 0.00 40.71 2.69
618 643 4.208873 GTGCTTGCAAAAATTCGTCATGAA 59.791 37.500 0.00 0.00 41.81 2.57
619 644 3.735240 GTGCTTGCAAAAATTCGTCATGA 59.265 39.130 0.00 0.00 0.00 3.07
620 645 3.737266 AGTGCTTGCAAAAATTCGTCATG 59.263 39.130 0.00 0.00 0.00 3.07
621 646 3.981211 AGTGCTTGCAAAAATTCGTCAT 58.019 36.364 0.00 0.00 0.00 3.06
622 647 3.435105 AGTGCTTGCAAAAATTCGTCA 57.565 38.095 0.00 0.00 0.00 4.35
623 648 5.881637 TTAAGTGCTTGCAAAAATTCGTC 57.118 34.783 0.00 0.00 0.00 4.20
624 649 6.312672 AGTTTTAAGTGCTTGCAAAAATTCGT 59.687 30.769 0.00 0.00 0.00 3.85
625 650 6.704819 AGTTTTAAGTGCTTGCAAAAATTCG 58.295 32.000 0.00 0.00 0.00 3.34
626 651 8.894409 AAAGTTTTAAGTGCTTGCAAAAATTC 57.106 26.923 0.00 0.00 29.83 2.17
627 652 9.127006 CAAAAGTTTTAAGTGCTTGCAAAAATT 57.873 25.926 0.00 0.00 31.70 1.82
628 653 8.296000 ACAAAAGTTTTAAGTGCTTGCAAAAAT 58.704 25.926 0.00 0.00 0.00 1.82
629 654 7.643579 ACAAAAGTTTTAAGTGCTTGCAAAAA 58.356 26.923 0.00 0.00 0.00 1.94
630 655 7.041780 TGACAAAAGTTTTAAGTGCTTGCAAAA 60.042 29.630 0.00 0.00 0.00 2.44
631 656 6.425114 TGACAAAAGTTTTAAGTGCTTGCAAA 59.575 30.769 0.00 0.00 0.00 3.68
632 657 5.928839 TGACAAAAGTTTTAAGTGCTTGCAA 59.071 32.000 0.00 0.00 0.00 4.08
633 658 5.473931 TGACAAAAGTTTTAAGTGCTTGCA 58.526 33.333 0.00 0.00 0.00 4.08
634 659 6.401955 TTGACAAAAGTTTTAAGTGCTTGC 57.598 33.333 0.00 0.00 0.00 4.01
635 660 7.962917 ACATTGACAAAAGTTTTAAGTGCTTG 58.037 30.769 0.00 0.00 0.00 4.01
636 661 8.546597 AACATTGACAAAAGTTTTAAGTGCTT 57.453 26.923 0.00 0.00 0.00 3.91
637 662 8.546597 AAACATTGACAAAAGTTTTAAGTGCT 57.453 26.923 13.35 0.00 34.43 4.40
638 663 8.655970 AGAAACATTGACAAAAGTTTTAAGTGC 58.344 29.630 17.76 8.51 37.33 4.40
644 669 9.495572 TTTGGTAGAAACATTGACAAAAGTTTT 57.504 25.926 17.76 0.00 37.33 2.43
645 670 9.495572 TTTTGGTAGAAACATTGACAAAAGTTT 57.504 25.926 17.09 17.09 39.28 2.66
646 671 9.495572 TTTTTGGTAGAAACATTGACAAAAGTT 57.504 25.926 0.00 0.00 37.55 2.66
647 672 9.665719 ATTTTTGGTAGAAACATTGACAAAAGT 57.334 25.926 0.00 0.00 37.55 2.66
704 729 4.438472 CGGGTGAACAGTAAAACCGAAAAA 60.438 41.667 6.07 0.00 42.19 1.94
705 730 3.065095 CGGGTGAACAGTAAAACCGAAAA 59.935 43.478 6.07 0.00 42.19 2.29
706 731 2.613133 CGGGTGAACAGTAAAACCGAAA 59.387 45.455 6.07 0.00 42.19 3.46
707 732 2.158986 TCGGGTGAACAGTAAAACCGAA 60.159 45.455 11.31 0.00 44.85 4.30
708 733 1.411977 TCGGGTGAACAGTAAAACCGA 59.588 47.619 9.94 9.94 45.52 4.69
709 734 1.796459 CTCGGGTGAACAGTAAAACCG 59.204 52.381 5.65 5.65 41.06 4.44
710 735 1.534163 GCTCGGGTGAACAGTAAAACC 59.466 52.381 0.00 0.00 0.00 3.27
711 736 2.479275 GAGCTCGGGTGAACAGTAAAAC 59.521 50.000 0.00 0.00 0.00 2.43
712 737 2.103432 TGAGCTCGGGTGAACAGTAAAA 59.897 45.455 9.64 0.00 0.00 1.52
713 738 1.689813 TGAGCTCGGGTGAACAGTAAA 59.310 47.619 9.64 0.00 0.00 2.01
714 739 1.334160 TGAGCTCGGGTGAACAGTAA 58.666 50.000 9.64 0.00 0.00 2.24
715 740 1.557099 ATGAGCTCGGGTGAACAGTA 58.443 50.000 9.64 0.00 0.00 2.74
716 741 1.557099 TATGAGCTCGGGTGAACAGT 58.443 50.000 9.64 0.00 0.00 3.55
717 742 2.101415 TCATATGAGCTCGGGTGAACAG 59.899 50.000 9.64 0.00 0.00 3.16
718 743 2.101415 CTCATATGAGCTCGGGTGAACA 59.899 50.000 19.47 0.00 35.13 3.18
719 744 2.748605 CTCATATGAGCTCGGGTGAAC 58.251 52.381 19.47 0.00 35.13 3.18
730 755 0.390492 TGCACCCGAGCTCATATGAG 59.610 55.000 25.64 25.64 44.75 2.90
731 756 0.390492 CTGCACCCGAGCTCATATGA 59.610 55.000 15.40 5.07 34.99 2.15
732 757 0.390492 TCTGCACCCGAGCTCATATG 59.610 55.000 15.40 9.02 34.99 1.78
733 758 1.123077 TTCTGCACCCGAGCTCATAT 58.877 50.000 15.40 0.00 34.99 1.78
734 759 0.901827 TTTCTGCACCCGAGCTCATA 59.098 50.000 15.40 0.00 34.99 2.15
735 760 0.674895 GTTTCTGCACCCGAGCTCAT 60.675 55.000 15.40 0.00 34.99 2.90
736 761 1.301716 GTTTCTGCACCCGAGCTCA 60.302 57.895 15.40 0.00 34.99 4.26
737 762 1.004440 AGTTTCTGCACCCGAGCTC 60.004 57.895 2.73 2.73 34.99 4.09
738 763 1.004440 GAGTTTCTGCACCCGAGCT 60.004 57.895 0.00 0.00 34.99 4.09
739 764 2.035442 GGAGTTTCTGCACCCGAGC 61.035 63.158 0.00 0.00 0.00 5.03
740 765 0.951040 GTGGAGTTTCTGCACCCGAG 60.951 60.000 9.63 0.00 44.99 4.63
741 766 1.070786 GTGGAGTTTCTGCACCCGA 59.929 57.895 9.63 0.00 44.99 5.14
742 767 3.655481 GTGGAGTTTCTGCACCCG 58.345 61.111 9.63 0.00 44.99 5.28
745 770 0.531974 TGGACGTGGAGTTTCTGCAC 60.532 55.000 10.52 10.52 46.73 4.57
746 771 0.179234 TTGGACGTGGAGTTTCTGCA 59.821 50.000 0.00 0.00 0.00 4.41
747 772 0.586802 GTTGGACGTGGAGTTTCTGC 59.413 55.000 0.00 0.00 0.00 4.26
748 773 1.867233 CAGTTGGACGTGGAGTTTCTG 59.133 52.381 0.00 0.00 0.00 3.02
749 774 1.810412 GCAGTTGGACGTGGAGTTTCT 60.810 52.381 0.00 0.00 0.00 2.52
750 775 0.586802 GCAGTTGGACGTGGAGTTTC 59.413 55.000 0.00 0.00 0.00 2.78
751 776 1.157870 CGCAGTTGGACGTGGAGTTT 61.158 55.000 0.00 0.00 0.00 2.66
752 777 1.594293 CGCAGTTGGACGTGGAGTT 60.594 57.895 0.00 0.00 0.00 3.01
753 778 1.816863 ATCGCAGTTGGACGTGGAGT 61.817 55.000 0.00 0.00 0.00 3.85
754 779 1.078759 GATCGCAGTTGGACGTGGAG 61.079 60.000 0.00 0.00 0.00 3.86
755 780 1.080093 GATCGCAGTTGGACGTGGA 60.080 57.895 0.00 0.00 0.00 4.02
756 781 1.374125 TGATCGCAGTTGGACGTGG 60.374 57.895 0.00 0.00 0.00 4.94
757 782 1.781555 GTGATCGCAGTTGGACGTG 59.218 57.895 0.16 0.00 0.00 4.49
758 783 1.733041 CGTGATCGCAGTTGGACGT 60.733 57.895 7.12 0.00 0.00 4.34
759 784 3.072598 CGTGATCGCAGTTGGACG 58.927 61.111 7.12 0.00 0.00 4.79
1476 1529 8.446273 AGAAAATCAAGACAGTTTACGATGATG 58.554 33.333 0.00 0.00 0.00 3.07
1478 1531 7.872993 AGAGAAAATCAAGACAGTTTACGATGA 59.127 33.333 0.00 0.00 0.00 2.92
1541 1598 2.543848 GCGATAGGATGCGAATCAACAA 59.456 45.455 5.57 0.00 0.00 2.83
1542 1599 2.135139 GCGATAGGATGCGAATCAACA 58.865 47.619 5.57 0.00 0.00 3.33
1549 1606 2.309528 AACAAAGCGATAGGATGCGA 57.690 45.000 0.00 0.00 35.87 5.10
1618 1676 2.289694 CGTCTCCATTGGTCCTGTTCTT 60.290 50.000 1.86 0.00 0.00 2.52
1620 1678 1.275291 TCGTCTCCATTGGTCCTGTTC 59.725 52.381 1.86 0.00 0.00 3.18
1744 1803 4.987912 CGATATGCTGTTTGTTTGGGTTTT 59.012 37.500 0.00 0.00 0.00 2.43
1761 1820 2.734723 CTCGCCGTGGCCGATATG 60.735 66.667 5.08 0.00 37.98 1.78
1762 1821 2.910479 TCTCGCCGTGGCCGATAT 60.910 61.111 5.08 0.00 37.98 1.63
1763 1822 3.896133 GTCTCGCCGTGGCCGATA 61.896 66.667 5.08 0.00 37.98 2.92
1793 1854 0.597568 TCAAGGCAATGCTTTCCGTG 59.402 50.000 4.82 0.00 0.00 4.94
1795 1856 1.000385 TGTTCAAGGCAATGCTTTCCG 60.000 47.619 4.82 0.00 0.00 4.30
1808 1870 6.618287 TTCCTTCAATACACTGTGTTCAAG 57.382 37.500 19.73 14.25 0.00 3.02
1824 1886 6.394809 GGAACTGTTTTTGTTCTTTCCTTCA 58.605 36.000 0.00 0.00 42.27 3.02
1893 1957 2.684881 CCGTAATTCTTGGCAGATTGCT 59.315 45.455 0.67 0.00 44.28 3.91
1894 1958 2.682856 TCCGTAATTCTTGGCAGATTGC 59.317 45.455 0.00 0.00 44.08 3.56
1895 1959 5.527214 TGTATCCGTAATTCTTGGCAGATTG 59.473 40.000 0.00 0.00 0.00 2.67
1896 1960 5.680619 TGTATCCGTAATTCTTGGCAGATT 58.319 37.500 0.00 0.00 0.00 2.40
1897 1961 5.290493 TGTATCCGTAATTCTTGGCAGAT 57.710 39.130 0.00 0.00 0.00 2.90
1898 1962 4.746535 TGTATCCGTAATTCTTGGCAGA 57.253 40.909 0.00 0.00 0.00 4.26
1899 1963 7.307989 CCTTTATGTATCCGTAATTCTTGGCAG 60.308 40.741 0.00 0.00 0.00 4.85
1900 1964 6.485313 CCTTTATGTATCCGTAATTCTTGGCA 59.515 38.462 0.00 0.00 0.00 4.92
1953 2017 3.515901 AGGATCTGCGATATAAAGGGTCC 59.484 47.826 0.00 0.00 0.00 4.46
1955 2019 6.875972 ATAAGGATCTGCGATATAAAGGGT 57.124 37.500 0.00 0.00 0.00 4.34
1967 2031 4.690748 TGTAAATGCGCTATAAGGATCTGC 59.309 41.667 9.73 0.00 0.00 4.26
1972 2036 5.522460 GTGAACTGTAAATGCGCTATAAGGA 59.478 40.000 9.73 0.00 0.00 3.36
1981 2045 4.833469 TGTATCGTGAACTGTAAATGCG 57.167 40.909 0.00 0.00 0.00 4.73
1984 2048 6.384224 TCGACTTGTATCGTGAACTGTAAAT 58.616 36.000 0.00 0.00 42.80 1.40
1995 2059 2.735134 GGCTGTTTTCGACTTGTATCGT 59.265 45.455 0.00 0.00 42.80 3.73
1997 2061 2.474032 GCGGCTGTTTTCGACTTGTATC 60.474 50.000 0.00 0.00 0.00 2.24
1999 2063 0.863144 GCGGCTGTTTTCGACTTGTA 59.137 50.000 0.00 0.00 0.00 2.41
2000 2064 1.647084 GCGGCTGTTTTCGACTTGT 59.353 52.632 0.00 0.00 0.00 3.16
2001 2065 1.438710 CGCGGCTGTTTTCGACTTG 60.439 57.895 0.00 0.00 0.00 3.16
2002 2066 1.593209 TCGCGGCTGTTTTCGACTT 60.593 52.632 6.13 0.00 0.00 3.01
2003 2067 2.028484 TCGCGGCTGTTTTCGACT 59.972 55.556 6.13 0.00 0.00 4.18
2004 2068 2.170273 GTCGCGGCTGTTTTCGAC 59.830 61.111 1.90 7.51 43.23 4.20
2017 2092 3.782244 CGGCTGCTGTTCTGTCGC 61.782 66.667 0.00 0.00 35.12 5.19
2028 2103 0.814010 ACGGGTTGATATTCGGCTGC 60.814 55.000 0.00 0.00 0.00 5.25
2031 2106 1.658994 TTCACGGGTTGATATTCGGC 58.341 50.000 0.00 0.00 32.84 5.54
2040 2115 8.749841 TGTATGATTTTAAATTTCACGGGTTG 57.250 30.769 0.00 0.00 0.00 3.77
2047 2122 7.486232 TGCGCGAATGTATGATTTTAAATTTCA 59.514 29.630 12.10 4.41 0.00 2.69
2048 2123 7.826636 TGCGCGAATGTATGATTTTAAATTTC 58.173 30.769 12.10 0.00 0.00 2.17
2055 2130 4.614555 TCTTGCGCGAATGTATGATTTT 57.385 36.364 12.10 0.00 0.00 1.82
2056 2131 4.614555 TTCTTGCGCGAATGTATGATTT 57.385 36.364 12.10 0.00 0.00 2.17
2062 2137 4.083537 AGTTCAATTTCTTGCGCGAATGTA 60.084 37.500 12.10 0.00 32.11 2.29
2068 2143 3.455619 ACTAGTTCAATTTCTTGCGCG 57.544 42.857 0.00 0.00 32.11 6.86
2100 2175 4.864916 TTTAAGATGATCAAGTGCTCGC 57.135 40.909 0.00 0.00 0.00 5.03
2150 2226 1.605710 CGCCTGCTCCTCCAAATATTG 59.394 52.381 0.00 0.00 0.00 1.90
2171 2247 7.094291 CCATTTTTGTAATTAGGGTTACGGTGA 60.094 37.037 0.00 0.00 37.37 4.02
2185 2261 4.277476 TCCGATGAGCCCATTTTTGTAAT 58.723 39.130 0.00 0.00 32.09 1.89
2203 2279 3.089874 CAATCCCCCTGGCTCCGA 61.090 66.667 0.00 0.00 0.00 4.55
2267 2357 0.741221 GTAGCCAAGAAGCAGGTCGG 60.741 60.000 0.00 0.00 34.23 4.79
2268 2358 0.247736 AGTAGCCAAGAAGCAGGTCG 59.752 55.000 0.00 0.00 34.23 4.79
2274 2370 1.154814 GCGCCTAGTAGCCAAGAAGC 61.155 60.000 0.00 0.00 0.00 3.86
2287 2383 1.264749 ACATGGAAGAGTGGCGCCTA 61.265 55.000 29.70 11.59 0.00 3.93
2310 2406 4.430423 CGGCGCAAGAGTTCGTGC 62.430 66.667 10.83 9.55 45.61 5.34
2312 2408 2.733593 GACGGCGCAAGAGTTCGT 60.734 61.111 10.83 7.66 43.02 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.