Multiple sequence alignment - TraesCS5B01G190000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G190000 chr5B 100.000 5966 0 0 1 5966 344285036 344291001 0.000000e+00 11018.0
1 TraesCS5B01G190000 chr5B 84.818 303 46 0 3560 3862 337189754 337189452 7.510000e-79 305.0
2 TraesCS5B01G190000 chr5B 95.455 66 1 2 363 427 635366987 635366923 2.940000e-18 104.0
3 TraesCS5B01G190000 chr5B 86.170 94 12 1 335 427 340156978 340156885 3.800000e-17 100.0
4 TraesCS5B01G190000 chr5B 85.106 94 13 1 335 427 340347068 340346975 1.770000e-15 95.3
5 TraesCS5B01G190000 chr5B 96.875 32 1 0 334 365 566131112 566131081 3.000000e-03 54.7
6 TraesCS5B01G190000 chr5D 96.759 5647 132 20 1 5623 300950114 300944495 0.000000e+00 9367.0
7 TraesCS5B01G190000 chr5D 84.818 303 46 0 3560 3862 297151519 297151217 7.510000e-79 305.0
8 TraesCS5B01G190000 chr5D 94.891 137 6 1 5619 5755 16892170 16892305 4.680000e-51 213.0
9 TraesCS5B01G190000 chr5D 94.891 137 6 1 5619 5755 126456249 126456384 4.680000e-51 213.0
10 TraesCS5B01G190000 chr5D 78.698 169 32 4 2498 2664 297152446 297152280 6.320000e-20 110.0
11 TraesCS5B01G190000 chr5A 96.022 4198 144 17 1438 5623 398189754 398193940 0.000000e+00 6806.0
12 TraesCS5B01G190000 chr5A 94.828 1102 50 5 423 1518 398188842 398189942 0.000000e+00 1712.0
13 TraesCS5B01G190000 chr5A 92.000 325 21 5 6 327 691791887 691791565 9.120000e-123 451.0
14 TraesCS5B01G190000 chr5A 84.539 304 45 2 3560 3862 401954335 401954637 3.490000e-77 300.0
15 TraesCS5B01G190000 chr5A 93.431 137 8 1 5824 5960 307354489 307354354 1.010000e-47 202.0
16 TraesCS5B01G190000 chr5A 83.178 214 13 2 5748 5960 40613582 40613773 2.210000e-39 174.0
17 TraesCS5B01G190000 chr5A 81.193 218 17 5 5743 5960 538315381 538315188 2.880000e-33 154.0
18 TraesCS5B01G190000 chr2A 92.705 329 21 3 1 327 62473351 62473024 7.000000e-129 472.0
19 TraesCS5B01G190000 chr2D 92.097 329 24 2 1 327 634076720 634077048 4.210000e-126 462.0
20 TraesCS5B01G190000 chr2D 92.308 325 22 3 6 327 634076345 634076669 5.450000e-125 459.0
21 TraesCS5B01G190000 chr2D 95.385 65 3 0 363 427 201388193 201388257 2.940000e-18 104.0
22 TraesCS5B01G190000 chr1D 92.073 328 25 1 1 327 320637755 320638082 1.510000e-125 460.0
23 TraesCS5B01G190000 chr1D 91.489 329 24 4 1 327 107544235 107543909 3.280000e-122 449.0
24 TraesCS5B01G190000 chr6D 92.097 329 20 5 1 327 256315491 256315815 5.450000e-125 459.0
25 TraesCS5B01G190000 chr6D 94.891 137 6 1 5619 5755 302468520 302468655 4.680000e-51 213.0
26 TraesCS5B01G190000 chr6B 91.489 329 24 4 1 327 570142552 570142226 3.280000e-122 449.0
27 TraesCS5B01G190000 chr6B 93.431 137 9 0 5824 5960 57240112 57239976 2.820000e-48 204.0
28 TraesCS5B01G190000 chr4B 87.440 207 20 3 5755 5960 604057051 604056850 3.600000e-57 233.0
29 TraesCS5B01G190000 chr7B 95.000 140 6 1 5619 5758 9914459 9914321 1.010000e-52 219.0
30 TraesCS5B01G190000 chr7B 94.161 137 8 0 5824 5960 435675907 435675771 6.060000e-50 209.0
31 TraesCS5B01G190000 chr7B 93.431 137 9 0 5824 5960 15508425 15508561 2.820000e-48 204.0
32 TraesCS5B01G190000 chr7B 93.431 137 9 0 5824 5960 572960233 572960097 2.820000e-48 204.0
33 TraesCS5B01G190000 chr7B 81.068 206 16 7 5755 5960 506564859 506564677 6.230000e-30 143.0
34 TraesCS5B01G190000 chr7B 93.939 66 4 0 363 428 638738947 638738882 3.800000e-17 100.0
35 TraesCS5B01G190000 chr4D 95.620 137 5 1 5619 5755 351223060 351223195 1.010000e-52 219.0
36 TraesCS5B01G190000 chr4D 94.928 138 6 1 5621 5758 156390285 156390149 1.300000e-51 215.0
37 TraesCS5B01G190000 chr4D 93.662 142 7 2 5614 5755 82797388 82797527 1.680000e-50 211.0
38 TraesCS5B01G190000 chr4D 93.939 66 4 0 363 428 465203216 465203281 3.800000e-17 100.0
39 TraesCS5B01G190000 chr3D 94.891 137 6 1 5619 5755 324642217 324642352 4.680000e-51 213.0
40 TraesCS5B01G190000 chr3D 84.466 206 10 4 5755 5960 454500249 454500066 3.670000e-42 183.0
41 TraesCS5B01G190000 chr1A 91.026 156 13 1 5603 5758 333927866 333927712 6.060000e-50 209.0
42 TraesCS5B01G190000 chr7A 94.161 137 7 1 5824 5960 398933962 398934097 2.180000e-49 207.0
43 TraesCS5B01G190000 chr7A 93.431 137 9 0 5824 5960 688305925 688305789 2.820000e-48 204.0
44 TraesCS5B01G190000 chr7A 79.452 219 19 12 5743 5960 680263250 680263057 1.350000e-26 132.0
45 TraesCS5B01G190000 chr2B 93.478 138 9 0 5823 5960 194389667 194389530 7.840000e-49 206.0
46 TraesCS5B01G190000 chr6A 80.498 241 21 5 5723 5960 584952379 584952162 1.720000e-35 161.0
47 TraesCS5B01G190000 chr6A 93.258 89 6 0 5747 5835 115506359 115506447 1.350000e-26 132.0
48 TraesCS5B01G190000 chr6A 93.258 89 6 0 5747 5835 115538542 115538630 1.350000e-26 132.0
49 TraesCS5B01G190000 chr1B 95.385 65 3 0 363 427 484293282 484293218 2.940000e-18 104.0
50 TraesCS5B01G190000 chr4A 92.857 70 4 1 360 428 624832713 624832644 3.800000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G190000 chr5B 344285036 344291001 5965 False 11018.0 11018 100.0000 1 5966 1 chr5B.!!$F1 5965
1 TraesCS5B01G190000 chr5D 300944495 300950114 5619 True 9367.0 9367 96.7590 1 5623 1 chr5D.!!$R1 5622
2 TraesCS5B01G190000 chr5D 297151217 297152446 1229 True 207.5 305 81.7580 2498 3862 2 chr5D.!!$R2 1364
3 TraesCS5B01G190000 chr5A 398188842 398193940 5098 False 4259.0 6806 95.4250 423 5623 2 chr5A.!!$F3 5200
4 TraesCS5B01G190000 chr2D 634076345 634077048 703 False 460.5 462 92.2025 1 327 2 chr2D.!!$F2 326

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
432 450 0.881600 ACAGGTTGGTTCGCGGTTAC 60.882 55.000 6.13 1.97 0.00 2.50 F
1263 1296 0.539986 GGCCTCAACCGGATACTGAA 59.460 55.000 9.46 0.00 0.00 3.02 F
1730 1763 0.529119 AGTTTTGCTGTTGCTGCTGC 60.529 50.000 8.89 8.89 40.48 5.25 F
2146 2179 0.904865 AGGTCATGGTGCTTCCTCGA 60.905 55.000 0.00 0.00 37.07 4.04 F
2320 2356 1.407258 CAAAGGGCAAACGACCAAAGA 59.593 47.619 0.00 0.00 31.68 2.52 F
3857 3983 0.034089 GGCCCATCTTGCAGGTAAGT 60.034 55.000 0.00 0.00 0.00 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1601 1634 0.104672 TCCACCTTCCTTCCTCACCA 60.105 55.000 0.00 0.0 0.00 4.17 R
2143 2176 0.382158 GCATCTCTCACGACCATCGA 59.618 55.000 5.04 0.0 43.74 3.59 R
3036 3095 1.134128 ACATTGCCCACGATAGCATCA 60.134 47.619 0.00 0.0 39.11 3.07 R
3442 3568 3.094572 CTCCTTCTTGCCAACAATCCAT 58.905 45.455 0.00 0.0 34.61 3.41 R
4059 4191 5.123979 GGTTTATGAGCCAACTTCAGGTAAG 59.876 44.000 0.00 0.0 41.33 2.34 R
5791 5924 0.035317 TCCGATCCTACATGGCATGC 59.965 55.000 26.70 9.9 35.26 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.964354 AGAGATAATAATAAATGGCATAGCACA 57.036 29.630 0.00 0.00 0.00 4.57
30 31 3.988379 AATAAATGGCATAGCACACCG 57.012 42.857 0.00 0.00 0.00 4.94
66 67 8.684386 TTGTTATGCGGGAATATCTGATTTTA 57.316 30.769 0.00 0.00 0.00 1.52
120 121 8.380742 TGTCTATCTTTTAGGAAGGTGATCTT 57.619 34.615 0.00 0.00 38.65 2.40
148 149 9.704098 CATATATGATGCGATTTCTGAATTCTG 57.296 33.333 6.92 6.50 0.00 3.02
271 273 4.722700 CAGCGGAAGGGGTGGTGG 62.723 72.222 0.00 0.00 0.00 4.61
291 293 4.941873 GTGGGAGGTGAGACGAAATAAAAT 59.058 41.667 0.00 0.00 0.00 1.82
331 349 6.319658 CGTACCAGTCTACCAACTCCTATAAA 59.680 42.308 0.00 0.00 0.00 1.40
339 357 5.803237 ACCAACTCCTATAAATACCTCCG 57.197 43.478 0.00 0.00 0.00 4.63
347 365 6.239396 TCCTATAAATACCTCCGAGAGACTG 58.761 44.000 0.00 0.00 0.00 3.51
348 366 6.044054 TCCTATAAATACCTCCGAGAGACTGA 59.956 42.308 0.00 0.00 0.00 3.41
374 392 5.241506 ACGGCATATCATATTTGAACCTTGG 59.758 40.000 0.00 0.00 34.96 3.61
384 402 3.886550 GAACCTTGGTGGGCTGGGG 62.887 68.421 0.00 0.00 41.11 4.96
404 422 2.102084 GGATACCACGGTTCTCCTAACC 59.898 54.545 9.27 0.00 36.96 2.85
415 433 2.626785 TCTCCTAACCATCCAACCACA 58.373 47.619 0.00 0.00 0.00 4.17
432 450 0.881600 ACAGGTTGGTTCGCGGTTAC 60.882 55.000 6.13 1.97 0.00 2.50
570 588 2.505819 ACACCGGGCATATTTCTCTTCT 59.494 45.455 6.32 0.00 0.00 2.85
581 609 7.500559 GGCATATTTCTCTTCTCCAAACATAGT 59.499 37.037 0.00 0.00 0.00 2.12
644 676 2.955022 AAGCAGAGCATCATCGGGGC 62.955 60.000 0.00 0.00 37.82 5.80
791 823 2.267351 CCACATCGCCAACAGCCAA 61.267 57.895 0.00 0.00 38.78 4.52
922 954 2.354821 GCGGCGGAATCTGAATTTTAGT 59.645 45.455 9.78 0.00 0.00 2.24
961 993 4.533919 TTCGTCGGGGTTGATTAAAGTA 57.466 40.909 0.00 0.00 0.00 2.24
1189 1222 3.513225 CCACCAATGGCGTCATCC 58.487 61.111 1.37 0.00 39.82 3.51
1263 1296 0.539986 GGCCTCAACCGGATACTGAA 59.460 55.000 9.46 0.00 0.00 3.02
1276 1309 0.543410 TACTGAAGGGTTGGCGGAGA 60.543 55.000 0.00 0.00 0.00 3.71
1429 1462 4.280019 ACAGGGCCGGTGTTTCCC 62.280 66.667 9.02 4.30 40.36 3.97
1436 1469 4.259131 CGGTGTTTCCCCCGTGGT 62.259 66.667 0.00 0.00 39.38 4.16
1495 1528 3.083349 CCGAGGGGATGGTGCAGA 61.083 66.667 0.00 0.00 34.06 4.26
1573 1606 5.541845 CAAGTAACAGAGATCTTCCACACA 58.458 41.667 0.00 0.00 0.00 3.72
1575 1608 2.732412 ACAGAGATCTTCCACACACG 57.268 50.000 0.00 0.00 0.00 4.49
1580 1613 3.240134 ATCTTCCACACACGCCGCT 62.240 57.895 0.00 0.00 0.00 5.52
1630 1663 1.078143 GAAGGTGGAGAGGCGCAAT 60.078 57.895 10.83 0.00 0.00 3.56
1730 1763 0.529119 AGTTTTGCTGTTGCTGCTGC 60.529 50.000 8.89 8.89 40.48 5.25
2082 2115 1.475280 ACGCCTATCAGTTTCGCTACA 59.525 47.619 0.00 0.00 0.00 2.74
2143 2176 1.067295 TTCAGGTCATGGTGCTTCCT 58.933 50.000 0.00 0.00 37.07 3.36
2146 2179 0.904865 AGGTCATGGTGCTTCCTCGA 60.905 55.000 0.00 0.00 37.07 4.04
2168 2201 1.470632 GGTCGTGAGAGATGCTTCCAG 60.471 57.143 0.00 0.00 43.49 3.86
2310 2346 2.433604 TGATGCAAAGACAAAGGGCAAA 59.566 40.909 0.00 0.00 38.08 3.68
2320 2356 1.407258 CAAAGGGCAAACGACCAAAGA 59.593 47.619 0.00 0.00 31.68 2.52
2425 2461 1.996898 TGCGCTCAAATAGTAACACGG 59.003 47.619 9.73 0.00 0.00 4.94
2481 2517 1.742268 GGCAAGGACTCTTTGATCAGC 59.258 52.381 5.11 0.00 0.00 4.26
2627 2663 5.640158 TGGACAAAAGGAAGGAAGTCTAA 57.360 39.130 0.00 0.00 0.00 2.10
2685 2721 4.753186 AGTCTCTTCCTCCTAAGAAACCA 58.247 43.478 0.00 0.00 35.14 3.67
3384 3510 7.110155 TCAAAGGTCAAAGTAGAAGTGAAGTT 58.890 34.615 0.00 0.00 0.00 2.66
3442 3568 7.147391 ACACTTATGATGGGTTATATGTGGTGA 60.147 37.037 0.00 0.00 38.35 4.02
3857 3983 0.034089 GGCCCATCTTGCAGGTAAGT 60.034 55.000 0.00 0.00 0.00 2.24
4059 4191 3.658757 TGGCTCATAAACCAAACTTGC 57.341 42.857 0.00 0.00 31.46 4.01
4360 4492 1.399791 GCAGGTGAGCTATTGCAAGAC 59.600 52.381 4.94 0.00 42.74 3.01
4496 4628 2.043664 ACCTCTGAGACAATGGAGGAGA 59.956 50.000 13.78 0.00 45.79 3.71
4579 4711 1.037579 GCTCCCCAAACCTGTATGCC 61.038 60.000 0.00 0.00 0.00 4.40
4747 4879 0.179018 AGGAGTGCTTGTGTGGTTCC 60.179 55.000 0.00 0.00 0.00 3.62
4797 4929 0.958822 ATTGGTTTTCGGTGACTGGC 59.041 50.000 0.00 0.00 0.00 4.85
4884 5017 2.356313 ACCTTGCACTCGCTGACG 60.356 61.111 0.00 0.00 39.64 4.35
4964 5097 9.330063 TGAAGAACATATAAACTCCAATAGCTG 57.670 33.333 0.00 0.00 0.00 4.24
5075 5208 7.426606 TGTACTGGCTATAACATGAGGTTTA 57.573 36.000 0.00 0.00 40.96 2.01
5261 5394 0.244994 CTACAAGTGCTCGGAGCTGT 59.755 55.000 28.42 24.80 42.97 4.40
5295 5428 2.187946 GATGCCGGGGACAGACTG 59.812 66.667 2.18 0.00 0.00 3.51
5296 5429 2.284625 ATGCCGGGGACAGACTGA 60.285 61.111 10.08 0.00 0.00 3.41
5395 5528 3.623060 CCGATAGAAGTTGTGGGTTCATG 59.377 47.826 0.00 0.00 39.76 3.07
5452 5585 0.543277 TCCAATAGTGAGCTGCCCTG 59.457 55.000 0.00 0.00 0.00 4.45
5623 5756 9.617975 CTTTCTGCTATTTGTTCTTTTCTAAGG 57.382 33.333 0.00 0.00 32.02 2.69
5624 5757 7.687941 TCTGCTATTTGTTCTTTTCTAAGGG 57.312 36.000 0.00 0.00 32.02 3.95
5625 5758 6.659242 TCTGCTATTTGTTCTTTTCTAAGGGG 59.341 38.462 0.00 0.00 32.02 4.79
5626 5759 5.714806 TGCTATTTGTTCTTTTCTAAGGGGG 59.285 40.000 0.00 0.00 32.02 5.40
5627 5760 5.715279 GCTATTTGTTCTTTTCTAAGGGGGT 59.285 40.000 0.00 0.00 32.02 4.95
5628 5761 6.350194 GCTATTTGTTCTTTTCTAAGGGGGTG 60.350 42.308 0.00 0.00 32.02 4.61
5629 5762 4.529716 TTGTTCTTTTCTAAGGGGGTGT 57.470 40.909 0.00 0.00 32.02 4.16
5630 5763 4.529716 TGTTCTTTTCTAAGGGGGTGTT 57.470 40.909 0.00 0.00 32.02 3.32
5631 5764 4.874199 TGTTCTTTTCTAAGGGGGTGTTT 58.126 39.130 0.00 0.00 32.02 2.83
5632 5765 4.647399 TGTTCTTTTCTAAGGGGGTGTTTG 59.353 41.667 0.00 0.00 32.02 2.93
5633 5766 4.529716 TCTTTTCTAAGGGGGTGTTTGT 57.470 40.909 0.00 0.00 32.02 2.83
5634 5767 4.874199 TCTTTTCTAAGGGGGTGTTTGTT 58.126 39.130 0.00 0.00 32.02 2.83
5635 5768 5.274015 TCTTTTCTAAGGGGGTGTTTGTTT 58.726 37.500 0.00 0.00 32.02 2.83
5636 5769 5.722441 TCTTTTCTAAGGGGGTGTTTGTTTT 59.278 36.000 0.00 0.00 32.02 2.43
5637 5770 6.213802 TCTTTTCTAAGGGGGTGTTTGTTTTT 59.786 34.615 0.00 0.00 32.02 1.94
5638 5771 7.399478 TCTTTTCTAAGGGGGTGTTTGTTTTTA 59.601 33.333 0.00 0.00 32.02 1.52
5639 5772 6.718522 TTCTAAGGGGGTGTTTGTTTTTAG 57.281 37.500 0.00 0.00 0.00 1.85
5640 5773 5.141910 TCTAAGGGGGTGTTTGTTTTTAGG 58.858 41.667 0.00 0.00 0.00 2.69
5641 5774 2.684943 AGGGGGTGTTTGTTTTTAGGG 58.315 47.619 0.00 0.00 0.00 3.53
5642 5775 2.247897 AGGGGGTGTTTGTTTTTAGGGA 59.752 45.455 0.00 0.00 0.00 4.20
5643 5776 3.116512 AGGGGGTGTTTGTTTTTAGGGAT 60.117 43.478 0.00 0.00 0.00 3.85
5644 5777 3.649023 GGGGGTGTTTGTTTTTAGGGATT 59.351 43.478 0.00 0.00 0.00 3.01
5645 5778 4.103469 GGGGGTGTTTGTTTTTAGGGATTT 59.897 41.667 0.00 0.00 0.00 2.17
5646 5779 5.398126 GGGGGTGTTTGTTTTTAGGGATTTT 60.398 40.000 0.00 0.00 0.00 1.82
5647 5780 6.123651 GGGGTGTTTGTTTTTAGGGATTTTT 58.876 36.000 0.00 0.00 0.00 1.94
5668 5801 7.576861 TTTTTGGTGTAGGGACTAGAAAAAG 57.423 36.000 0.00 0.00 44.14 2.27
5669 5802 5.899631 TTGGTGTAGGGACTAGAAAAAGT 57.100 39.130 0.00 0.00 44.14 2.66
5670 5803 5.479124 TGGTGTAGGGACTAGAAAAAGTC 57.521 43.478 0.00 0.00 44.14 3.01
5671 5804 5.152934 TGGTGTAGGGACTAGAAAAAGTCT 58.847 41.667 0.00 0.00 44.14 3.24
5672 5805 5.245526 TGGTGTAGGGACTAGAAAAAGTCTC 59.754 44.000 0.00 0.01 44.14 3.36
5679 5812 7.706100 GGGACTAGAAAAAGTCTCTCTTAGA 57.294 40.000 0.00 0.00 42.68 2.10
5680 5813 7.768240 GGGACTAGAAAAAGTCTCTCTTAGAG 58.232 42.308 2.23 2.23 42.68 2.43
5695 5828 9.543783 TCTCTCTTAGAGACTTTTTAACCAAAC 57.456 33.333 8.00 0.00 45.77 2.93
5696 5829 9.326413 CTCTCTTAGAGACTTTTTAACCAAACA 57.674 33.333 8.00 0.00 45.07 2.83
5697 5830 9.326413 TCTCTTAGAGACTTTTTAACCAAACAG 57.674 33.333 8.00 0.00 33.35 3.16
5698 5831 8.446599 TCTTAGAGACTTTTTAACCAAACAGG 57.553 34.615 0.00 0.00 45.67 4.00
5699 5832 8.269317 TCTTAGAGACTTTTTAACCAAACAGGA 58.731 33.333 0.00 0.00 41.22 3.86
5700 5833 6.944234 AGAGACTTTTTAACCAAACAGGAG 57.056 37.500 0.00 0.00 41.22 3.69
5701 5834 5.828328 AGAGACTTTTTAACCAAACAGGAGG 59.172 40.000 0.00 0.00 41.22 4.30
5702 5835 4.893524 AGACTTTTTAACCAAACAGGAGGG 59.106 41.667 0.00 0.00 41.22 4.30
5703 5836 4.874199 ACTTTTTAACCAAACAGGAGGGA 58.126 39.130 0.00 0.00 41.22 4.20
5704 5837 4.647853 ACTTTTTAACCAAACAGGAGGGAC 59.352 41.667 0.00 0.00 41.22 4.46
5706 5839 5.649970 TTTTAACCAAACAGGAGGGACTA 57.350 39.130 0.00 0.00 41.55 2.59
5707 5840 4.628963 TTAACCAAACAGGAGGGACTAC 57.371 45.455 0.00 0.00 41.55 2.73
5718 5851 4.533001 GGAGGGACTACTAGGGACTAAA 57.467 50.000 0.00 0.00 39.34 1.85
5719 5852 4.876580 GGAGGGACTACTAGGGACTAAAA 58.123 47.826 0.00 0.00 39.34 1.52
5720 5853 4.894705 GGAGGGACTACTAGGGACTAAAAG 59.105 50.000 0.00 0.00 39.34 2.27
5721 5854 5.517924 GAGGGACTACTAGGGACTAAAAGT 58.482 45.833 0.00 0.00 39.34 2.66
5722 5855 5.913277 AGGGACTACTAGGGACTAAAAGTT 58.087 41.667 0.00 0.00 37.45 2.66
5723 5856 5.720520 AGGGACTACTAGGGACTAAAAGTTG 59.279 44.000 0.00 0.00 37.45 3.16
5724 5857 5.417811 GGACTACTAGGGACTAAAAGTTGC 58.582 45.833 0.00 0.00 42.17 4.17
5725 5858 5.187381 GGACTACTAGGGACTAAAAGTTGCT 59.813 44.000 0.00 0.00 42.17 3.91
5726 5859 6.295745 GGACTACTAGGGACTAAAAGTTGCTT 60.296 42.308 0.00 0.00 42.17 3.91
5727 5860 7.075851 ACTACTAGGGACTAAAAGTTGCTTT 57.924 36.000 0.00 0.00 42.17 3.51
5728 5861 7.515586 ACTACTAGGGACTAAAAGTTGCTTTT 58.484 34.615 10.99 10.99 42.17 2.27
5729 5862 6.879276 ACTAGGGACTAAAAGTTGCTTTTC 57.121 37.500 9.73 0.00 42.17 2.29
5730 5863 6.602278 ACTAGGGACTAAAAGTTGCTTTTCT 58.398 36.000 9.73 4.55 42.17 2.52
5731 5864 5.774498 AGGGACTAAAAGTTGCTTTTCTG 57.226 39.130 9.73 7.58 41.88 3.02
5732 5865 4.584743 AGGGACTAAAAGTTGCTTTTCTGG 59.415 41.667 9.73 5.61 41.88 3.86
5733 5866 4.262036 GGGACTAAAAGTTGCTTTTCTGGG 60.262 45.833 9.73 3.68 41.88 4.45
5734 5867 4.583073 GGACTAAAAGTTGCTTTTCTGGGA 59.417 41.667 9.73 0.00 41.88 4.37
5735 5868 5.507482 GGACTAAAAGTTGCTTTTCTGGGAC 60.507 44.000 9.73 2.23 41.88 4.46
5736 5869 5.201243 ACTAAAAGTTGCTTTTCTGGGACT 58.799 37.500 9.73 0.00 41.88 3.85
5737 5870 6.362248 ACTAAAAGTTGCTTTTCTGGGACTA 58.638 36.000 9.73 0.00 41.88 2.59
5738 5871 6.831868 ACTAAAAGTTGCTTTTCTGGGACTAA 59.168 34.615 9.73 0.00 41.88 2.24
5739 5872 6.538945 AAAAGTTGCTTTTCTGGGACTAAA 57.461 33.333 1.46 0.00 39.10 1.85
5740 5873 6.731292 AAAGTTGCTTTTCTGGGACTAAAT 57.269 33.333 0.00 0.00 28.27 1.40
5741 5874 5.712152 AGTTGCTTTTCTGGGACTAAATG 57.288 39.130 0.00 0.00 0.00 2.32
5742 5875 5.385198 AGTTGCTTTTCTGGGACTAAATGA 58.615 37.500 0.00 0.00 0.00 2.57
5743 5876 5.833131 AGTTGCTTTTCTGGGACTAAATGAA 59.167 36.000 0.00 0.00 0.00 2.57
5744 5877 5.964958 TGCTTTTCTGGGACTAAATGAAG 57.035 39.130 0.00 0.00 0.00 3.02
5745 5878 5.630121 TGCTTTTCTGGGACTAAATGAAGA 58.370 37.500 0.00 0.00 0.00 2.87
5746 5879 6.068010 TGCTTTTCTGGGACTAAATGAAGAA 58.932 36.000 0.00 0.00 0.00 2.52
5747 5880 6.207417 TGCTTTTCTGGGACTAAATGAAGAAG 59.793 38.462 0.00 0.00 0.00 2.85
5748 5881 6.431234 GCTTTTCTGGGACTAAATGAAGAAGA 59.569 38.462 0.00 0.00 0.00 2.87
5749 5882 7.574030 GCTTTTCTGGGACTAAATGAAGAAGAC 60.574 40.741 0.00 0.00 0.00 3.01
5750 5883 6.688073 TTCTGGGACTAAATGAAGAAGACT 57.312 37.500 0.00 0.00 0.00 3.24
5751 5884 7.792364 TTCTGGGACTAAATGAAGAAGACTA 57.208 36.000 0.00 0.00 0.00 2.59
5752 5885 7.979786 TCTGGGACTAAATGAAGAAGACTAT 57.020 36.000 0.00 0.00 0.00 2.12
5753 5886 8.012957 TCTGGGACTAAATGAAGAAGACTATC 57.987 38.462 0.00 0.00 0.00 2.08
5754 5887 7.619698 TCTGGGACTAAATGAAGAAGACTATCA 59.380 37.037 0.00 0.00 0.00 2.15
5755 5888 7.786030 TGGGACTAAATGAAGAAGACTATCAG 58.214 38.462 0.00 0.00 0.00 2.90
5756 5889 7.147655 TGGGACTAAATGAAGAAGACTATCAGG 60.148 40.741 0.00 0.00 0.00 3.86
5757 5890 7.213678 GGACTAAATGAAGAAGACTATCAGGG 58.786 42.308 0.00 0.00 0.00 4.45
5758 5891 6.587273 ACTAAATGAAGAAGACTATCAGGGC 58.413 40.000 0.00 0.00 0.00 5.19
5759 5892 5.441718 AAATGAAGAAGACTATCAGGGCA 57.558 39.130 0.00 0.00 0.00 5.36
5760 5893 5.643421 AATGAAGAAGACTATCAGGGCAT 57.357 39.130 0.00 0.00 0.00 4.40
5761 5894 4.412796 TGAAGAAGACTATCAGGGCATG 57.587 45.455 0.00 0.00 0.00 4.06
5762 5895 3.776969 TGAAGAAGACTATCAGGGCATGT 59.223 43.478 0.00 0.00 0.00 3.21
5763 5896 4.962362 TGAAGAAGACTATCAGGGCATGTA 59.038 41.667 0.00 0.00 0.00 2.29
5764 5897 4.946478 AGAAGACTATCAGGGCATGTAC 57.054 45.455 0.00 0.00 0.00 2.90
5765 5898 4.290093 AGAAGACTATCAGGGCATGTACA 58.710 43.478 0.00 0.00 0.00 2.90
5766 5899 4.716784 AGAAGACTATCAGGGCATGTACAA 59.283 41.667 0.00 0.00 0.00 2.41
5767 5900 5.367937 AGAAGACTATCAGGGCATGTACAAT 59.632 40.000 0.00 0.00 0.00 2.71
5768 5901 4.965814 AGACTATCAGGGCATGTACAATG 58.034 43.478 0.00 0.12 0.00 2.82
5769 5902 3.480470 ACTATCAGGGCATGTACAATGC 58.520 45.455 17.01 17.01 43.85 3.56
5770 5903 2.440517 ATCAGGGCATGTACAATGCA 57.559 45.000 22.92 0.00 46.21 3.96
5771 5904 2.440517 TCAGGGCATGTACAATGCAT 57.559 45.000 22.92 13.25 46.21 3.96
5772 5905 3.574354 TCAGGGCATGTACAATGCATA 57.426 42.857 22.92 9.25 46.21 3.14
5773 5906 3.479489 TCAGGGCATGTACAATGCATAG 58.521 45.455 22.92 15.02 46.21 2.23
5774 5907 2.030540 CAGGGCATGTACAATGCATAGC 60.031 50.000 22.92 11.42 46.21 2.97
5775 5908 1.270550 GGGCATGTACAATGCATAGCC 59.729 52.381 22.92 16.30 46.21 3.93
5776 5909 1.270550 GGCATGTACAATGCATAGCCC 59.729 52.381 22.92 8.44 46.21 5.19
5777 5910 1.270550 GCATGTACAATGCATAGCCCC 59.729 52.381 19.12 0.00 44.00 5.80
5778 5911 2.585330 CATGTACAATGCATAGCCCCA 58.415 47.619 0.00 0.00 0.00 4.96
5779 5912 2.346766 TGTACAATGCATAGCCCCAG 57.653 50.000 0.00 0.00 0.00 4.45
5780 5913 1.133823 TGTACAATGCATAGCCCCAGG 60.134 52.381 0.00 0.00 0.00 4.45
5781 5914 0.478072 TACAATGCATAGCCCCAGGG 59.522 55.000 0.00 0.00 38.57 4.45
5782 5915 1.231068 CAATGCATAGCCCCAGGGT 59.769 57.895 4.22 0.00 37.65 4.34
5783 5916 1.111116 CAATGCATAGCCCCAGGGTG 61.111 60.000 4.22 0.00 37.65 4.61
5784 5917 1.288508 AATGCATAGCCCCAGGGTGA 61.289 55.000 4.22 0.00 37.65 4.02
5785 5918 1.070127 ATGCATAGCCCCAGGGTGAT 61.070 55.000 4.22 0.00 37.65 3.06
5786 5919 1.228367 GCATAGCCCCAGGGTGATG 60.228 63.158 4.22 9.26 37.65 3.07
5787 5920 1.228367 CATAGCCCCAGGGTGATGC 60.228 63.158 4.22 0.00 37.65 3.91
5788 5921 2.464403 ATAGCCCCAGGGTGATGCC 61.464 63.158 4.22 0.00 37.65 4.40
5789 5922 2.940421 ATAGCCCCAGGGTGATGCCT 62.940 60.000 4.22 0.00 37.65 4.75
5790 5923 4.512914 GCCCCAGGGTGATGCCTC 62.513 72.222 4.22 0.00 37.65 4.70
5791 5924 4.181010 CCCCAGGGTGATGCCTCG 62.181 72.222 4.22 0.00 37.43 4.63
5792 5925 4.864334 CCCAGGGTGATGCCTCGC 62.864 72.222 0.00 0.00 37.43 5.03
5793 5926 4.100084 CCAGGGTGATGCCTCGCA 62.100 66.667 4.90 0.00 44.86 5.10
5802 5935 2.588989 TGCCTCGCATGCCATGTA 59.411 55.556 13.15 0.00 31.71 2.29
5803 5936 1.524393 TGCCTCGCATGCCATGTAG 60.524 57.895 13.15 4.55 31.71 2.74
5804 5937 2.256591 GCCTCGCATGCCATGTAGG 61.257 63.158 18.53 18.53 38.09 3.18
5805 5938 1.447217 CCTCGCATGCCATGTAGGA 59.553 57.895 18.19 8.22 41.22 2.94
5806 5939 0.035881 CCTCGCATGCCATGTAGGAT 59.964 55.000 18.19 0.00 41.22 3.24
5807 5940 1.436600 CTCGCATGCCATGTAGGATC 58.563 55.000 13.15 0.00 41.22 3.36
5808 5941 0.319813 TCGCATGCCATGTAGGATCG 60.320 55.000 13.15 0.23 41.22 3.69
5809 5942 1.293963 CGCATGCCATGTAGGATCGG 61.294 60.000 13.15 0.00 41.22 4.18
5810 5943 0.035317 GCATGCCATGTAGGATCGGA 59.965 55.000 6.36 0.00 41.22 4.55
5811 5944 1.339438 GCATGCCATGTAGGATCGGAT 60.339 52.381 6.36 0.00 41.22 4.18
5812 5945 2.093500 GCATGCCATGTAGGATCGGATA 60.093 50.000 6.36 0.00 41.22 2.59
5813 5946 3.432749 GCATGCCATGTAGGATCGGATAT 60.433 47.826 6.36 0.00 41.22 1.63
5814 5947 3.893326 TGCCATGTAGGATCGGATATG 57.107 47.619 0.00 0.00 41.22 1.78
5815 5948 3.440127 TGCCATGTAGGATCGGATATGA 58.560 45.455 0.00 0.00 41.22 2.15
5816 5949 3.195610 TGCCATGTAGGATCGGATATGAC 59.804 47.826 0.00 0.00 41.22 3.06
5817 5950 3.735208 GCCATGTAGGATCGGATATGACG 60.735 52.174 0.00 0.00 41.22 4.35
5818 5951 3.444034 CCATGTAGGATCGGATATGACGT 59.556 47.826 0.00 0.00 41.22 4.34
5819 5952 4.638865 CCATGTAGGATCGGATATGACGTA 59.361 45.833 0.00 0.00 41.22 3.57
5820 5953 5.124936 CCATGTAGGATCGGATATGACGTAA 59.875 44.000 0.00 0.00 41.22 3.18
5821 5954 6.349860 CCATGTAGGATCGGATATGACGTAAA 60.350 42.308 0.00 0.00 41.22 2.01
5822 5955 6.829229 TGTAGGATCGGATATGACGTAAAT 57.171 37.500 0.00 0.00 0.00 1.40
5823 5956 7.223260 TGTAGGATCGGATATGACGTAAATT 57.777 36.000 0.00 0.00 0.00 1.82
5824 5957 8.339344 TGTAGGATCGGATATGACGTAAATTA 57.661 34.615 0.00 0.00 0.00 1.40
5825 5958 8.456471 TGTAGGATCGGATATGACGTAAATTAG 58.544 37.037 0.00 0.00 0.00 1.73
5826 5959 6.864342 AGGATCGGATATGACGTAAATTAGG 58.136 40.000 0.00 0.00 0.00 2.69
5827 5960 6.662234 AGGATCGGATATGACGTAAATTAGGA 59.338 38.462 0.00 0.00 0.00 2.94
5828 5961 7.342284 AGGATCGGATATGACGTAAATTAGGAT 59.658 37.037 0.00 0.00 0.00 3.24
5829 5962 7.648510 GGATCGGATATGACGTAAATTAGGATC 59.351 40.741 0.00 0.00 0.00 3.36
5830 5963 6.549061 TCGGATATGACGTAAATTAGGATCG 58.451 40.000 0.00 0.00 0.00 3.69
5831 5964 5.742453 CGGATATGACGTAAATTAGGATCGG 59.258 44.000 0.00 0.00 0.00 4.18
5832 5965 6.403964 CGGATATGACGTAAATTAGGATCGGA 60.404 42.308 0.00 0.00 0.00 4.55
5833 5966 7.490000 GGATATGACGTAAATTAGGATCGGAT 58.510 38.462 0.00 0.00 0.00 4.18
5834 5967 8.627403 GGATATGACGTAAATTAGGATCGGATA 58.373 37.037 0.00 0.00 0.00 2.59
5836 5969 9.967346 ATATGACGTAAATTAGGATCGGATATG 57.033 33.333 0.00 0.00 0.00 1.78
5837 5970 7.457024 TGACGTAAATTAGGATCGGATATGA 57.543 36.000 0.00 0.00 0.00 2.15
5838 5971 7.310664 TGACGTAAATTAGGATCGGATATGAC 58.689 38.462 0.00 0.00 0.00 3.06
5839 5972 6.320171 ACGTAAATTAGGATCGGATATGACG 58.680 40.000 0.00 0.00 0.00 4.35
5840 5973 6.072286 ACGTAAATTAGGATCGGATATGACGT 60.072 38.462 0.00 0.00 32.94 4.34
5841 5974 7.119699 ACGTAAATTAGGATCGGATATGACGTA 59.880 37.037 7.75 0.00 35.73 3.57
5842 5975 7.964559 CGTAAATTAGGATCGGATATGACGTAA 59.035 37.037 0.00 0.00 0.00 3.18
5843 5976 9.630098 GTAAATTAGGATCGGATATGACGTAAA 57.370 33.333 0.00 0.00 0.00 2.01
5845 5978 9.720769 AAATTAGGATCGGATATGACGTAAATT 57.279 29.630 0.00 0.00 0.00 1.82
5848 5981 6.864342 AGGATCGGATATGACGTAAATTAGG 58.136 40.000 0.00 0.00 0.00 2.69
5849 5982 6.436532 AGGATCGGATATGACGTAAATTAGGT 59.563 38.462 0.00 0.00 0.00 3.08
5850 5983 7.039223 AGGATCGGATATGACGTAAATTAGGTT 60.039 37.037 0.00 0.00 0.00 3.50
5851 5984 7.275123 GGATCGGATATGACGTAAATTAGGTTC 59.725 40.741 0.00 0.00 0.00 3.62
5852 5985 6.144854 TCGGATATGACGTAAATTAGGTTCG 58.855 40.000 0.00 0.00 0.00 3.95
5853 5986 5.344128 CGGATATGACGTAAATTAGGTTCGG 59.656 44.000 0.00 0.00 0.00 4.30
5854 5987 6.449698 GGATATGACGTAAATTAGGTTCGGA 58.550 40.000 0.00 0.00 0.00 4.55
5855 5988 7.095270 GGATATGACGTAAATTAGGTTCGGAT 58.905 38.462 0.00 0.00 0.00 4.18
5856 5989 8.246180 GGATATGACGTAAATTAGGTTCGGATA 58.754 37.037 0.00 0.00 0.00 2.59
5857 5990 9.286946 GATATGACGTAAATTAGGTTCGGATAG 57.713 37.037 0.00 0.00 0.00 2.08
5858 5991 5.835257 TGACGTAAATTAGGTTCGGATAGG 58.165 41.667 0.00 0.00 0.00 2.57
5859 5992 5.205759 ACGTAAATTAGGTTCGGATAGGG 57.794 43.478 0.00 0.00 0.00 3.53
5860 5993 4.895297 ACGTAAATTAGGTTCGGATAGGGA 59.105 41.667 0.00 0.00 0.00 4.20
5861 5994 5.363580 ACGTAAATTAGGTTCGGATAGGGAA 59.636 40.000 0.00 0.00 0.00 3.97
5862 5995 5.924825 CGTAAATTAGGTTCGGATAGGGAAG 59.075 44.000 0.00 0.00 0.00 3.46
5863 5996 4.353383 AATTAGGTTCGGATAGGGAAGC 57.647 45.455 0.00 0.00 41.06 3.86
5864 5997 1.325355 TAGGTTCGGATAGGGAAGCG 58.675 55.000 0.00 0.00 44.35 4.68
5865 5998 1.069258 GGTTCGGATAGGGAAGCGG 59.931 63.158 0.00 0.00 32.96 5.52
5866 5999 1.069258 GTTCGGATAGGGAAGCGGG 59.931 63.158 0.00 0.00 0.00 6.13
5867 6000 1.075822 TTCGGATAGGGAAGCGGGA 60.076 57.895 0.00 0.00 0.00 5.14
5868 6001 0.471211 TTCGGATAGGGAAGCGGGAT 60.471 55.000 0.00 0.00 0.00 3.85
5869 6002 0.898789 TCGGATAGGGAAGCGGGATC 60.899 60.000 0.00 0.00 0.00 3.36
5870 6003 1.889530 CGGATAGGGAAGCGGGATCC 61.890 65.000 1.92 1.92 36.16 3.36
5871 6004 0.545548 GGATAGGGAAGCGGGATCCT 60.546 60.000 12.58 0.00 37.14 3.24
5872 6005 0.899019 GATAGGGAAGCGGGATCCTC 59.101 60.000 12.58 4.01 37.14 3.71
5873 6006 0.489567 ATAGGGAAGCGGGATCCTCT 59.510 55.000 12.58 6.48 37.14 3.69
5874 6007 0.178958 TAGGGAAGCGGGATCCTCTC 60.179 60.000 12.58 0.44 37.14 3.20
5875 6008 2.512355 GGGAAGCGGGATCCTCTCC 61.512 68.421 12.58 11.82 44.11 3.71
5876 6009 1.762460 GGAAGCGGGATCCTCTCCA 60.762 63.158 12.58 0.00 46.98 3.86
5877 6010 1.745264 GAAGCGGGATCCTCTCCAG 59.255 63.158 12.58 0.00 46.98 3.86
5878 6011 1.753368 GAAGCGGGATCCTCTCCAGG 61.753 65.000 12.58 0.00 46.98 4.45
5887 6020 3.307445 CTCTCCAGGAGGCAGGTG 58.693 66.667 17.10 0.00 38.35 4.00
5888 6021 3.005539 TCTCCAGGAGGCAGGTGC 61.006 66.667 17.10 0.00 41.14 5.01
5889 6022 3.007920 CTCCAGGAGGCAGGTGCT 61.008 66.667 8.88 0.00 41.70 4.40
5890 6023 2.530151 TCCAGGAGGCAGGTGCTT 60.530 61.111 1.26 0.00 41.70 3.91
5891 6024 2.360852 CCAGGAGGCAGGTGCTTG 60.361 66.667 1.26 0.00 41.70 4.01
5892 6025 2.360852 CAGGAGGCAGGTGCTTGG 60.361 66.667 1.26 0.00 41.70 3.61
5893 6026 2.530151 AGGAGGCAGGTGCTTGGA 60.530 61.111 1.26 0.00 41.70 3.53
5894 6027 2.045536 GGAGGCAGGTGCTTGGAG 60.046 66.667 1.26 0.00 41.70 3.86
5895 6028 2.596851 GGAGGCAGGTGCTTGGAGA 61.597 63.158 1.26 0.00 41.70 3.71
5896 6029 1.078567 GAGGCAGGTGCTTGGAGAG 60.079 63.158 1.26 0.00 41.70 3.20
5897 6030 1.537397 AGGCAGGTGCTTGGAGAGA 60.537 57.895 1.26 0.00 41.70 3.10
5898 6031 1.130054 AGGCAGGTGCTTGGAGAGAA 61.130 55.000 1.26 0.00 41.70 2.87
5899 6032 0.250901 GGCAGGTGCTTGGAGAGAAA 60.251 55.000 1.26 0.00 41.70 2.52
5900 6033 1.609208 GCAGGTGCTTGGAGAGAAAA 58.391 50.000 0.00 0.00 38.21 2.29
5901 6034 1.956477 GCAGGTGCTTGGAGAGAAAAA 59.044 47.619 0.00 0.00 38.21 1.94
5916 6049 3.045518 AAAAATGTGGTCCGGGGTC 57.954 52.632 0.00 0.00 0.00 4.46
5917 6050 0.186386 AAAAATGTGGTCCGGGGTCA 59.814 50.000 0.00 0.00 0.00 4.02
5918 6051 0.186386 AAAATGTGGTCCGGGGTCAA 59.814 50.000 0.00 0.00 0.00 3.18
5919 6052 0.186386 AAATGTGGTCCGGGGTCAAA 59.814 50.000 0.00 0.00 0.00 2.69
5920 6053 0.186386 AATGTGGTCCGGGGTCAAAA 59.814 50.000 0.00 0.00 0.00 2.44
5921 6054 0.251165 ATGTGGTCCGGGGTCAAAAG 60.251 55.000 0.00 0.00 0.00 2.27
5922 6055 2.114411 TGGTCCGGGGTCAAAAGC 59.886 61.111 0.00 0.00 0.00 3.51
5923 6056 2.434774 GGTCCGGGGTCAAAAGCT 59.565 61.111 0.00 0.00 0.00 3.74
5924 6057 1.971695 GGTCCGGGGTCAAAAGCTG 60.972 63.158 0.00 0.00 0.00 4.24
5925 6058 1.971695 GTCCGGGGTCAAAAGCTGG 60.972 63.158 0.00 0.00 0.00 4.85
5926 6059 2.150719 TCCGGGGTCAAAAGCTGGA 61.151 57.895 0.00 0.00 0.00 3.86
5927 6060 1.228429 CCGGGGTCAAAAGCTGGAA 60.228 57.895 0.00 0.00 0.00 3.53
5928 6061 0.825840 CCGGGGTCAAAAGCTGGAAA 60.826 55.000 0.00 0.00 0.00 3.13
5929 6062 0.598065 CGGGGTCAAAAGCTGGAAAG 59.402 55.000 0.00 0.00 0.00 2.62
5930 6063 0.969149 GGGGTCAAAAGCTGGAAAGG 59.031 55.000 0.00 0.00 0.00 3.11
5931 6064 1.704641 GGGTCAAAAGCTGGAAAGGT 58.295 50.000 0.00 0.00 0.00 3.50
5932 6065 2.039418 GGGTCAAAAGCTGGAAAGGTT 58.961 47.619 0.00 0.00 0.00 3.50
5933 6066 2.224042 GGGTCAAAAGCTGGAAAGGTTG 60.224 50.000 0.00 0.00 0.00 3.77
5934 6067 2.224042 GGTCAAAAGCTGGAAAGGTTGG 60.224 50.000 0.00 0.00 0.00 3.77
5935 6068 2.693074 GTCAAAAGCTGGAAAGGTTGGA 59.307 45.455 0.00 0.00 0.00 3.53
5936 6069 2.958355 TCAAAAGCTGGAAAGGTTGGAG 59.042 45.455 0.00 0.00 0.00 3.86
5937 6070 2.695147 CAAAAGCTGGAAAGGTTGGAGT 59.305 45.455 0.00 0.00 0.00 3.85
5938 6071 1.986882 AAGCTGGAAAGGTTGGAGTG 58.013 50.000 0.00 0.00 0.00 3.51
5939 6072 0.111253 AGCTGGAAAGGTTGGAGTGG 59.889 55.000 0.00 0.00 0.00 4.00
5940 6073 0.110486 GCTGGAAAGGTTGGAGTGGA 59.890 55.000 0.00 0.00 0.00 4.02
5941 6074 1.478654 GCTGGAAAGGTTGGAGTGGAA 60.479 52.381 0.00 0.00 0.00 3.53
5942 6075 2.944129 CTGGAAAGGTTGGAGTGGAAA 58.056 47.619 0.00 0.00 0.00 3.13
5943 6076 2.887152 CTGGAAAGGTTGGAGTGGAAAG 59.113 50.000 0.00 0.00 0.00 2.62
5944 6077 2.243736 TGGAAAGGTTGGAGTGGAAAGT 59.756 45.455 0.00 0.00 0.00 2.66
5945 6078 3.460340 TGGAAAGGTTGGAGTGGAAAGTA 59.540 43.478 0.00 0.00 0.00 2.24
5946 6079 4.072839 GGAAAGGTTGGAGTGGAAAGTAG 58.927 47.826 0.00 0.00 0.00 2.57
5947 6080 4.202430 GGAAAGGTTGGAGTGGAAAGTAGA 60.202 45.833 0.00 0.00 0.00 2.59
5948 6081 4.625607 AAGGTTGGAGTGGAAAGTAGAG 57.374 45.455 0.00 0.00 0.00 2.43
5949 6082 3.858135 AGGTTGGAGTGGAAAGTAGAGA 58.142 45.455 0.00 0.00 0.00 3.10
5950 6083 4.430441 AGGTTGGAGTGGAAAGTAGAGAT 58.570 43.478 0.00 0.00 0.00 2.75
5951 6084 4.223923 AGGTTGGAGTGGAAAGTAGAGATG 59.776 45.833 0.00 0.00 0.00 2.90
5952 6085 3.895232 TGGAGTGGAAAGTAGAGATGC 57.105 47.619 0.00 0.00 0.00 3.91
5953 6086 3.173151 TGGAGTGGAAAGTAGAGATGCA 58.827 45.455 0.00 0.00 0.00 3.96
5954 6087 3.776969 TGGAGTGGAAAGTAGAGATGCAT 59.223 43.478 0.00 0.00 0.00 3.96
5955 6088 4.125703 GGAGTGGAAAGTAGAGATGCATG 58.874 47.826 2.46 0.00 0.00 4.06
5956 6089 4.383552 GGAGTGGAAAGTAGAGATGCATGT 60.384 45.833 2.46 0.00 0.00 3.21
5957 6090 4.511527 AGTGGAAAGTAGAGATGCATGTG 58.488 43.478 2.46 0.00 0.00 3.21
5958 6091 4.019860 AGTGGAAAGTAGAGATGCATGTGT 60.020 41.667 2.46 0.00 0.00 3.72
5959 6092 5.187772 AGTGGAAAGTAGAGATGCATGTGTA 59.812 40.000 2.46 0.00 0.00 2.90
5960 6093 5.874810 GTGGAAAGTAGAGATGCATGTGTAA 59.125 40.000 2.46 0.00 0.00 2.41
5961 6094 6.371548 GTGGAAAGTAGAGATGCATGTGTAAA 59.628 38.462 2.46 0.00 0.00 2.01
5962 6095 6.595326 TGGAAAGTAGAGATGCATGTGTAAAG 59.405 38.462 2.46 0.00 0.00 1.85
5963 6096 6.595716 GGAAAGTAGAGATGCATGTGTAAAGT 59.404 38.462 2.46 0.00 0.00 2.66
5964 6097 7.201565 GGAAAGTAGAGATGCATGTGTAAAGTC 60.202 40.741 2.46 0.98 0.00 3.01
5965 6098 6.537453 AGTAGAGATGCATGTGTAAAGTCT 57.463 37.500 2.46 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.764237 AACAAATCACTACTCCGGTGT 57.236 42.857 14.50 14.50 36.25 4.16
27 28 4.189231 GCATAACAAATCACTACTCCGGT 58.811 43.478 0.00 0.00 0.00 5.28
30 31 3.560068 CCCGCATAACAAATCACTACTCC 59.440 47.826 0.00 0.00 0.00 3.85
271 273 4.270325 CCGATTTTATTTCGTCTCACCTCC 59.730 45.833 0.00 0.00 34.85 4.30
291 293 1.335872 GGTACGGTCTTTTTCGTCCGA 60.336 52.381 9.37 0.00 44.86 4.55
331 349 2.484065 CGTCTCAGTCTCTCGGAGGTAT 60.484 54.545 4.96 0.00 38.55 2.73
339 357 2.881513 TGATATGCCGTCTCAGTCTCTC 59.118 50.000 0.00 0.00 0.00 3.20
347 365 5.934625 AGGTTCAAATATGATATGCCGTCTC 59.065 40.000 0.00 0.00 34.96 3.36
348 366 5.869579 AGGTTCAAATATGATATGCCGTCT 58.130 37.500 0.00 0.00 34.96 4.18
374 392 2.595655 GTGGTATCCCCAGCCCAC 59.404 66.667 0.00 0.00 46.45 4.61
384 402 2.762327 TGGTTAGGAGAACCGTGGTATC 59.238 50.000 2.23 0.00 43.15 2.24
415 433 1.665599 CGTAACCGCGAACCAACCT 60.666 57.895 8.23 0.00 0.00 3.50
432 450 7.190920 AGATTTGGTCTTTTAAAGTCTGACG 57.809 36.000 4.53 0.00 31.47 4.35
508 526 7.324935 TCATGCGTAGATACAACTTTCCTAAA 58.675 34.615 0.00 0.00 0.00 1.85
644 676 1.410224 GGTGCTCCTAGAATTTGGGGG 60.410 57.143 0.00 0.00 0.00 5.40
922 954 6.423862 CGACGAAAAAGATAAGAACCAAACA 58.576 36.000 0.00 0.00 0.00 2.83
961 993 6.602009 CCTACAAATCCGGATAAAAGAAAGGT 59.398 38.462 19.48 7.99 0.00 3.50
1189 1222 2.365586 CCTCCTCCACTCTGCCCTG 61.366 68.421 0.00 0.00 0.00 4.45
1244 1277 0.539986 TTCAGTATCCGGTTGAGGCC 59.460 55.000 0.00 0.00 0.00 5.19
1263 1296 3.003763 GTCCTCTCCGCCAACCCT 61.004 66.667 0.00 0.00 0.00 4.34
1276 1309 0.114560 TCTCCAACCTCCTTCGTCCT 59.885 55.000 0.00 0.00 0.00 3.85
1377 1410 1.313129 GCCCTCCTTCCTCTCCTCT 59.687 63.158 0.00 0.00 0.00 3.69
1436 1469 2.110213 GGAGGTCACCGTTGCACA 59.890 61.111 0.00 0.00 0.00 4.57
1495 1528 0.719015 TCTCCACCCTCCTTCCTCAT 59.281 55.000 0.00 0.00 0.00 2.90
1560 1593 1.079819 CGGCGTGTGTGGAAGATCT 60.080 57.895 0.00 0.00 0.00 2.75
1580 1613 1.918293 ACCATGGTCTCCGGCTGAA 60.918 57.895 13.00 0.00 0.00 3.02
1601 1634 0.104672 TCCACCTTCCTTCCTCACCA 60.105 55.000 0.00 0.00 0.00 4.17
1730 1763 1.665679 CATTCTCGACGGAACCATTGG 59.334 52.381 0.00 0.00 0.00 3.16
2082 2115 2.284699 ACTACAGAGGCGCCCCTT 60.285 61.111 26.15 3.93 43.12 3.95
2143 2176 0.382158 GCATCTCTCACGACCATCGA 59.618 55.000 5.04 0.00 43.74 3.59
2146 2179 1.137872 GGAAGCATCTCTCACGACCAT 59.862 52.381 0.00 0.00 0.00 3.55
2168 2201 0.823356 TTTGCCTTGCACCTCCTCAC 60.823 55.000 0.00 0.00 38.71 3.51
2328 2364 7.174426 ACATCATCTCGCAATGTATCATTCATT 59.826 33.333 0.00 0.00 36.16 2.57
2387 2423 3.547613 GCGCACATCATCTCTTGAATTCC 60.548 47.826 0.30 0.00 38.03 3.01
2425 2461 0.593128 AACTTCACAACGCCATGCTC 59.407 50.000 0.00 0.00 0.00 4.26
2481 2517 4.815269 CACACTTGGACTCCTTAGAAGAG 58.185 47.826 0.00 0.00 37.39 2.85
2627 2663 2.836981 AGAGAGTTGGAAGCACTAGCAT 59.163 45.455 0.00 0.00 45.49 3.79
2685 2721 4.081322 TGGAGTAGCGTCCTTTTTCTTT 57.919 40.909 4.68 0.00 37.52 2.52
3036 3095 1.134128 ACATTGCCCACGATAGCATCA 60.134 47.619 0.00 0.00 39.11 3.07
3384 3510 3.098774 TGCTTGGATTTAGAATGCCCA 57.901 42.857 0.00 0.00 0.00 5.36
3442 3568 3.094572 CTCCTTCTTGCCAACAATCCAT 58.905 45.455 0.00 0.00 34.61 3.41
3929 4061 6.029346 ACATTTCCAGGTTCTGCAAATTAG 57.971 37.500 0.00 0.00 30.45 1.73
3974 4106 6.777213 AGACTCGGTACAAGATTTGTCTAT 57.223 37.500 0.00 0.00 44.12 1.98
4059 4191 5.123979 GGTTTATGAGCCAACTTCAGGTAAG 59.876 44.000 0.00 0.00 41.33 2.34
4360 4492 4.880759 TCTCTCTCTTTTCAGCTTCTGTG 58.119 43.478 0.00 0.00 32.61 3.66
4535 4667 4.999950 GCTATGGTTGATGAATCTTCCGAT 59.000 41.667 0.00 0.00 0.00 4.18
4639 4771 1.623311 TGAAGCGGAGGAATGTTCTCA 59.377 47.619 0.00 0.00 33.18 3.27
4884 5017 6.801862 GGCACAGAAAATAAACACTACATGTC 59.198 38.462 0.00 0.00 42.31 3.06
4952 5085 4.082125 CAAAAAGGGTCAGCTATTGGAGT 58.918 43.478 0.00 0.00 0.00 3.85
5075 5208 6.767524 TTGTCATAACAAAGACCAACAGTT 57.232 33.333 0.00 0.00 42.34 3.16
5580 5713 3.642848 AGAAAGCAAACACATGTGGGAAT 59.357 39.130 28.64 10.00 34.19 3.01
5623 5756 4.967084 AATCCCTAAAAACAAACACCCC 57.033 40.909 0.00 0.00 0.00 4.95
5644 5777 7.120716 ACTTTTTCTAGTCCCTACACCAAAAA 58.879 34.615 0.00 0.00 0.00 1.94
5645 5778 6.665695 ACTTTTTCTAGTCCCTACACCAAAA 58.334 36.000 0.00 0.00 0.00 2.44
5646 5779 6.100714 AGACTTTTTCTAGTCCCTACACCAAA 59.899 38.462 0.00 0.00 44.50 3.28
5647 5780 5.605488 AGACTTTTTCTAGTCCCTACACCAA 59.395 40.000 0.00 0.00 44.50 3.67
5648 5781 5.152934 AGACTTTTTCTAGTCCCTACACCA 58.847 41.667 0.00 0.00 44.50 4.17
5649 5782 5.481122 AGAGACTTTTTCTAGTCCCTACACC 59.519 44.000 0.00 0.00 44.50 4.16
5650 5783 6.434965 AGAGAGACTTTTTCTAGTCCCTACAC 59.565 42.308 0.00 0.00 44.50 2.90
5651 5784 6.553857 AGAGAGACTTTTTCTAGTCCCTACA 58.446 40.000 0.00 0.00 44.50 2.74
5652 5785 7.470935 AAGAGAGACTTTTTCTAGTCCCTAC 57.529 40.000 0.00 0.00 44.50 3.18
5653 5786 8.613034 TCTAAGAGAGACTTTTTCTAGTCCCTA 58.387 37.037 0.00 0.00 44.50 3.53
5654 5787 7.471890 TCTAAGAGAGACTTTTTCTAGTCCCT 58.528 38.462 0.00 0.00 44.50 4.20
5655 5788 7.612633 TCTCTAAGAGAGACTTTTTCTAGTCCC 59.387 40.741 3.01 0.00 45.77 4.46
5656 5789 8.570068 TCTCTAAGAGAGACTTTTTCTAGTCC 57.430 38.462 3.01 0.00 45.77 3.85
5670 5803 9.326413 TGTTTGGTTAAAAAGTCTCTAAGAGAG 57.674 33.333 2.66 2.66 43.64 3.20
5671 5804 9.326413 CTGTTTGGTTAAAAAGTCTCTAAGAGA 57.674 33.333 0.00 0.00 36.22 3.10
5672 5805 8.560374 CCTGTTTGGTTAAAAAGTCTCTAAGAG 58.440 37.037 0.00 0.00 30.49 2.85
5673 5806 8.269317 TCCTGTTTGGTTAAAAAGTCTCTAAGA 58.731 33.333 0.00 0.00 37.07 2.10
5674 5807 8.446599 TCCTGTTTGGTTAAAAAGTCTCTAAG 57.553 34.615 0.00 0.00 37.07 2.18
5675 5808 7.501225 CCTCCTGTTTGGTTAAAAAGTCTCTAA 59.499 37.037 0.00 0.00 37.07 2.10
5676 5809 6.996282 CCTCCTGTTTGGTTAAAAAGTCTCTA 59.004 38.462 0.00 0.00 37.07 2.43
5677 5810 5.828328 CCTCCTGTTTGGTTAAAAAGTCTCT 59.172 40.000 0.00 0.00 37.07 3.10
5678 5811 5.009710 CCCTCCTGTTTGGTTAAAAAGTCTC 59.990 44.000 0.00 0.00 37.07 3.36
5679 5812 4.893524 CCCTCCTGTTTGGTTAAAAAGTCT 59.106 41.667 0.00 0.00 37.07 3.24
5680 5813 4.891168 TCCCTCCTGTTTGGTTAAAAAGTC 59.109 41.667 0.00 0.00 37.07 3.01
5681 5814 4.647853 GTCCCTCCTGTTTGGTTAAAAAGT 59.352 41.667 0.00 0.00 37.07 2.66
5682 5815 4.893524 AGTCCCTCCTGTTTGGTTAAAAAG 59.106 41.667 0.00 0.00 37.07 2.27
5683 5816 4.874199 AGTCCCTCCTGTTTGGTTAAAAA 58.126 39.130 0.00 0.00 37.07 1.94
5684 5817 4.529716 AGTCCCTCCTGTTTGGTTAAAA 57.470 40.909 0.00 0.00 37.07 1.52
5685 5818 4.661709 AGTAGTCCCTCCTGTTTGGTTAAA 59.338 41.667 0.00 0.00 37.07 1.52
5686 5819 4.237018 AGTAGTCCCTCCTGTTTGGTTAA 58.763 43.478 0.00 0.00 37.07 2.01
5687 5820 3.865571 AGTAGTCCCTCCTGTTTGGTTA 58.134 45.455 0.00 0.00 37.07 2.85
5688 5821 2.702748 AGTAGTCCCTCCTGTTTGGTT 58.297 47.619 0.00 0.00 37.07 3.67
5689 5822 2.417719 AGTAGTCCCTCCTGTTTGGT 57.582 50.000 0.00 0.00 37.07 3.67
5690 5823 2.766828 CCTAGTAGTCCCTCCTGTTTGG 59.233 54.545 0.00 0.00 37.10 3.28
5691 5824 2.766828 CCCTAGTAGTCCCTCCTGTTTG 59.233 54.545 0.00 0.00 0.00 2.93
5692 5825 2.658489 TCCCTAGTAGTCCCTCCTGTTT 59.342 50.000 0.00 0.00 0.00 2.83
5693 5826 2.024177 GTCCCTAGTAGTCCCTCCTGTT 60.024 54.545 0.00 0.00 0.00 3.16
5694 5827 1.570024 GTCCCTAGTAGTCCCTCCTGT 59.430 57.143 0.00 0.00 0.00 4.00
5695 5828 1.854280 AGTCCCTAGTAGTCCCTCCTG 59.146 57.143 0.00 0.00 0.00 3.86
5696 5829 2.307032 AGTCCCTAGTAGTCCCTCCT 57.693 55.000 0.00 0.00 0.00 3.69
5697 5830 4.533001 TTTAGTCCCTAGTAGTCCCTCC 57.467 50.000 0.00 0.00 0.00 4.30
5698 5831 5.517924 ACTTTTAGTCCCTAGTAGTCCCTC 58.482 45.833 0.00 0.00 0.00 4.30
5699 5832 5.549229 ACTTTTAGTCCCTAGTAGTCCCT 57.451 43.478 0.00 0.00 0.00 4.20
5700 5833 5.626347 GCAACTTTTAGTCCCTAGTAGTCCC 60.626 48.000 0.00 0.00 0.00 4.46
5701 5834 5.187381 AGCAACTTTTAGTCCCTAGTAGTCC 59.813 44.000 0.00 0.00 0.00 3.85
5702 5835 6.283544 AGCAACTTTTAGTCCCTAGTAGTC 57.716 41.667 0.00 0.00 0.00 2.59
5703 5836 6.683312 AAGCAACTTTTAGTCCCTAGTAGT 57.317 37.500 0.00 0.00 0.00 2.73
5704 5837 7.878644 AGAAAAGCAACTTTTAGTCCCTAGTAG 59.121 37.037 5.36 0.00 42.72 2.57
5705 5838 7.660208 CAGAAAAGCAACTTTTAGTCCCTAGTA 59.340 37.037 5.36 0.00 42.72 1.82
5706 5839 6.486993 CAGAAAAGCAACTTTTAGTCCCTAGT 59.513 38.462 5.36 0.00 42.72 2.57
5707 5840 6.072452 CCAGAAAAGCAACTTTTAGTCCCTAG 60.072 42.308 5.36 0.00 42.72 3.02
5708 5841 5.768164 CCAGAAAAGCAACTTTTAGTCCCTA 59.232 40.000 5.36 0.00 42.72 3.53
5709 5842 4.584743 CCAGAAAAGCAACTTTTAGTCCCT 59.415 41.667 5.36 0.00 42.72 4.20
5710 5843 4.262036 CCCAGAAAAGCAACTTTTAGTCCC 60.262 45.833 5.36 0.00 42.72 4.46
5711 5844 4.583073 TCCCAGAAAAGCAACTTTTAGTCC 59.417 41.667 5.36 0.00 42.72 3.85
5712 5845 5.299531 AGTCCCAGAAAAGCAACTTTTAGTC 59.700 40.000 5.36 0.00 42.72 2.59
5713 5846 5.201243 AGTCCCAGAAAAGCAACTTTTAGT 58.799 37.500 5.36 0.00 42.72 2.24
5714 5847 5.774498 AGTCCCAGAAAAGCAACTTTTAG 57.226 39.130 5.36 2.46 42.72 1.85
5715 5848 7.648039 TTTAGTCCCAGAAAAGCAACTTTTA 57.352 32.000 5.36 0.00 42.72 1.52
5716 5849 6.538945 TTTAGTCCCAGAAAAGCAACTTTT 57.461 33.333 5.05 5.05 44.92 2.27
5717 5850 6.323739 TCATTTAGTCCCAGAAAAGCAACTTT 59.676 34.615 0.00 0.00 34.94 2.66
5718 5851 5.833131 TCATTTAGTCCCAGAAAAGCAACTT 59.167 36.000 0.00 0.00 0.00 2.66
5719 5852 5.385198 TCATTTAGTCCCAGAAAAGCAACT 58.615 37.500 0.00 0.00 0.00 3.16
5720 5853 5.705609 TCATTTAGTCCCAGAAAAGCAAC 57.294 39.130 0.00 0.00 0.00 4.17
5721 5854 6.068010 TCTTCATTTAGTCCCAGAAAAGCAA 58.932 36.000 0.00 0.00 0.00 3.91
5722 5855 5.630121 TCTTCATTTAGTCCCAGAAAAGCA 58.370 37.500 0.00 0.00 0.00 3.91
5723 5856 6.431234 TCTTCTTCATTTAGTCCCAGAAAAGC 59.569 38.462 0.00 0.00 0.00 3.51
5724 5857 7.663493 AGTCTTCTTCATTTAGTCCCAGAAAAG 59.337 37.037 0.00 0.00 0.00 2.27
5725 5858 7.518188 AGTCTTCTTCATTTAGTCCCAGAAAA 58.482 34.615 0.00 0.00 0.00 2.29
5726 5859 7.079451 AGTCTTCTTCATTTAGTCCCAGAAA 57.921 36.000 0.00 0.00 0.00 2.52
5727 5860 6.688073 AGTCTTCTTCATTTAGTCCCAGAA 57.312 37.500 0.00 0.00 0.00 3.02
5728 5861 7.619698 TGATAGTCTTCTTCATTTAGTCCCAGA 59.380 37.037 0.00 0.00 0.00 3.86
5729 5862 7.786030 TGATAGTCTTCTTCATTTAGTCCCAG 58.214 38.462 0.00 0.00 0.00 4.45
5730 5863 7.147655 CCTGATAGTCTTCTTCATTTAGTCCCA 60.148 40.741 0.00 0.00 0.00 4.37
5731 5864 7.213678 CCTGATAGTCTTCTTCATTTAGTCCC 58.786 42.308 0.00 0.00 0.00 4.46
5732 5865 7.213678 CCCTGATAGTCTTCTTCATTTAGTCC 58.786 42.308 0.00 0.00 0.00 3.85
5733 5866 6.704050 GCCCTGATAGTCTTCTTCATTTAGTC 59.296 42.308 0.00 0.00 0.00 2.59
5734 5867 6.156949 TGCCCTGATAGTCTTCTTCATTTAGT 59.843 38.462 0.00 0.00 0.00 2.24
5735 5868 6.586344 TGCCCTGATAGTCTTCTTCATTTAG 58.414 40.000 0.00 0.00 0.00 1.85
5736 5869 6.560003 TGCCCTGATAGTCTTCTTCATTTA 57.440 37.500 0.00 0.00 0.00 1.40
5737 5870 5.441718 TGCCCTGATAGTCTTCTTCATTT 57.558 39.130 0.00 0.00 0.00 2.32
5738 5871 5.104193 ACATGCCCTGATAGTCTTCTTCATT 60.104 40.000 0.00 0.00 0.00 2.57
5739 5872 4.411540 ACATGCCCTGATAGTCTTCTTCAT 59.588 41.667 0.00 0.00 0.00 2.57
5740 5873 3.776969 ACATGCCCTGATAGTCTTCTTCA 59.223 43.478 0.00 0.00 0.00 3.02
5741 5874 4.414337 ACATGCCCTGATAGTCTTCTTC 57.586 45.455 0.00 0.00 0.00 2.87
5742 5875 4.716784 TGTACATGCCCTGATAGTCTTCTT 59.283 41.667 0.00 0.00 0.00 2.52
5743 5876 4.290093 TGTACATGCCCTGATAGTCTTCT 58.710 43.478 0.00 0.00 0.00 2.85
5744 5877 4.672587 TGTACATGCCCTGATAGTCTTC 57.327 45.455 0.00 0.00 0.00 2.87
5745 5878 5.371526 CATTGTACATGCCCTGATAGTCTT 58.628 41.667 0.00 0.00 0.00 3.01
5746 5879 4.744867 GCATTGTACATGCCCTGATAGTCT 60.745 45.833 15.31 0.00 39.01 3.24
5747 5880 3.499918 GCATTGTACATGCCCTGATAGTC 59.500 47.826 15.31 0.00 39.01 2.59
5748 5881 3.117926 TGCATTGTACATGCCCTGATAGT 60.118 43.478 20.37 0.00 43.94 2.12
5749 5882 3.479489 TGCATTGTACATGCCCTGATAG 58.521 45.455 20.37 0.00 43.94 2.08
5750 5883 3.574354 TGCATTGTACATGCCCTGATA 57.426 42.857 20.37 5.30 43.94 2.15
5751 5884 2.440517 TGCATTGTACATGCCCTGAT 57.559 45.000 20.37 0.00 43.94 2.90
5752 5885 2.440517 ATGCATTGTACATGCCCTGA 57.559 45.000 20.37 8.34 43.94 3.86
5753 5886 2.030540 GCTATGCATTGTACATGCCCTG 60.031 50.000 20.37 13.67 43.94 4.45
5754 5887 2.233271 GCTATGCATTGTACATGCCCT 58.767 47.619 20.37 13.49 43.94 5.19
5755 5888 1.270550 GGCTATGCATTGTACATGCCC 59.729 52.381 20.37 13.59 43.94 5.36
5756 5889 1.270550 GGGCTATGCATTGTACATGCC 59.729 52.381 20.37 7.71 43.94 4.40
5757 5890 1.270550 GGGGCTATGCATTGTACATGC 59.729 52.381 3.54 17.91 44.76 4.06
5758 5891 2.555325 CTGGGGCTATGCATTGTACATG 59.445 50.000 3.54 0.00 0.00 3.21
5759 5892 2.489619 CCTGGGGCTATGCATTGTACAT 60.490 50.000 3.54 0.00 0.00 2.29
5760 5893 1.133823 CCTGGGGCTATGCATTGTACA 60.134 52.381 3.54 3.12 0.00 2.90
5761 5894 1.609208 CCTGGGGCTATGCATTGTAC 58.391 55.000 3.54 0.22 0.00 2.90
5762 5895 0.478072 CCCTGGGGCTATGCATTGTA 59.522 55.000 3.54 0.00 0.00 2.41
5763 5896 1.231068 CCCTGGGGCTATGCATTGT 59.769 57.895 3.54 0.00 0.00 2.71
5764 5897 1.111116 CACCCTGGGGCTATGCATTG 61.111 60.000 18.88 3.55 39.32 2.82
5765 5898 1.231068 CACCCTGGGGCTATGCATT 59.769 57.895 18.88 0.00 39.32 3.56
5766 5899 1.070127 ATCACCCTGGGGCTATGCAT 61.070 55.000 18.88 3.79 39.32 3.96
5767 5900 1.697394 ATCACCCTGGGGCTATGCA 60.697 57.895 18.88 0.00 39.32 3.96
5768 5901 1.228367 CATCACCCTGGGGCTATGC 60.228 63.158 18.88 0.00 39.32 3.14
5769 5902 1.228367 GCATCACCCTGGGGCTATG 60.228 63.158 18.88 17.03 39.32 2.23
5770 5903 2.464403 GGCATCACCCTGGGGCTAT 61.464 63.158 18.88 4.24 39.32 2.97
5771 5904 3.096495 GGCATCACCCTGGGGCTA 61.096 66.667 18.88 1.65 39.32 3.93
5773 5906 4.512914 GAGGCATCACCCTGGGGC 62.513 72.222 18.88 10.49 40.58 5.80
5774 5907 4.181010 CGAGGCATCACCCTGGGG 62.181 72.222 18.88 7.87 40.58 4.96
5775 5908 4.864334 GCGAGGCATCACCCTGGG 62.864 72.222 12.28 12.28 40.58 4.45
5776 5909 4.100084 TGCGAGGCATCACCCTGG 62.100 66.667 0.00 0.00 40.58 4.45
5786 5919 2.256591 CCTACATGGCATGCGAGGC 61.257 63.158 26.96 0.00 32.09 4.70
5787 5920 0.035881 ATCCTACATGGCATGCGAGG 59.964 55.000 30.04 30.04 37.80 4.63
5788 5921 1.436600 GATCCTACATGGCATGCGAG 58.563 55.000 26.70 22.01 35.26 5.03
5789 5922 0.319813 CGATCCTACATGGCATGCGA 60.320 55.000 26.70 19.03 35.26 5.10
5790 5923 1.293963 CCGATCCTACATGGCATGCG 61.294 60.000 26.70 19.33 35.26 4.73
5791 5924 0.035317 TCCGATCCTACATGGCATGC 59.965 55.000 26.70 9.90 35.26 4.06
5792 5925 2.775911 ATCCGATCCTACATGGCATG 57.224 50.000 25.31 25.31 35.26 4.06
5793 5926 4.033009 TCATATCCGATCCTACATGGCAT 58.967 43.478 0.00 0.00 35.26 4.40
5794 5927 3.195610 GTCATATCCGATCCTACATGGCA 59.804 47.826 0.00 0.00 35.26 4.92
5795 5928 3.735208 CGTCATATCCGATCCTACATGGC 60.735 52.174 0.00 0.00 35.26 4.40
5796 5929 3.444034 ACGTCATATCCGATCCTACATGG 59.556 47.826 0.00 0.00 37.10 3.66
5797 5930 4.703645 ACGTCATATCCGATCCTACATG 57.296 45.455 0.00 0.00 0.00 3.21
5798 5931 6.829229 TTTACGTCATATCCGATCCTACAT 57.171 37.500 0.00 0.00 0.00 2.29
5799 5932 6.829229 ATTTACGTCATATCCGATCCTACA 57.171 37.500 0.00 0.00 0.00 2.74
5800 5933 7.914346 CCTAATTTACGTCATATCCGATCCTAC 59.086 40.741 0.00 0.00 0.00 3.18
5801 5934 7.830697 TCCTAATTTACGTCATATCCGATCCTA 59.169 37.037 0.00 0.00 0.00 2.94
5802 5935 6.662234 TCCTAATTTACGTCATATCCGATCCT 59.338 38.462 0.00 0.00 0.00 3.24
5803 5936 6.860080 TCCTAATTTACGTCATATCCGATCC 58.140 40.000 0.00 0.00 0.00 3.36
5804 5937 7.376336 CGATCCTAATTTACGTCATATCCGATC 59.624 40.741 0.00 0.00 0.00 3.69
5805 5938 7.194278 CGATCCTAATTTACGTCATATCCGAT 58.806 38.462 0.00 0.00 0.00 4.18
5806 5939 6.403964 CCGATCCTAATTTACGTCATATCCGA 60.404 42.308 0.00 0.00 0.00 4.55
5807 5940 5.742453 CCGATCCTAATTTACGTCATATCCG 59.258 44.000 0.00 0.00 0.00 4.18
5808 5941 6.860080 TCCGATCCTAATTTACGTCATATCC 58.140 40.000 0.00 0.00 0.00 2.59
5810 5943 9.967346 CATATCCGATCCTAATTTACGTCATAT 57.033 33.333 0.00 0.00 0.00 1.78
5811 5944 9.181061 TCATATCCGATCCTAATTTACGTCATA 57.819 33.333 0.00 0.00 0.00 2.15
5812 5945 7.974501 GTCATATCCGATCCTAATTTACGTCAT 59.025 37.037 0.00 0.00 0.00 3.06
5813 5946 7.310664 GTCATATCCGATCCTAATTTACGTCA 58.689 38.462 0.00 0.00 0.00 4.35
5814 5947 6.468319 CGTCATATCCGATCCTAATTTACGTC 59.532 42.308 0.00 0.00 0.00 4.34
5815 5948 6.072286 ACGTCATATCCGATCCTAATTTACGT 60.072 38.462 0.00 0.00 33.06 3.57
5816 5949 6.320171 ACGTCATATCCGATCCTAATTTACG 58.680 40.000 0.00 0.00 0.00 3.18
5817 5950 9.630098 TTTACGTCATATCCGATCCTAATTTAC 57.370 33.333 0.00 0.00 0.00 2.01
5819 5952 9.720769 AATTTACGTCATATCCGATCCTAATTT 57.279 29.630 0.00 0.00 0.00 1.82
5822 5955 8.464404 CCTAATTTACGTCATATCCGATCCTAA 58.536 37.037 0.00 0.00 0.00 2.69
5823 5956 7.613022 ACCTAATTTACGTCATATCCGATCCTA 59.387 37.037 0.00 0.00 0.00 2.94
5824 5957 6.436532 ACCTAATTTACGTCATATCCGATCCT 59.563 38.462 0.00 0.00 0.00 3.24
5825 5958 6.628185 ACCTAATTTACGTCATATCCGATCC 58.372 40.000 0.00 0.00 0.00 3.36
5826 5959 7.008086 CGAACCTAATTTACGTCATATCCGATC 59.992 40.741 0.00 0.00 0.00 3.69
5827 5960 6.805271 CGAACCTAATTTACGTCATATCCGAT 59.195 38.462 0.00 0.00 0.00 4.18
5828 5961 6.144854 CGAACCTAATTTACGTCATATCCGA 58.855 40.000 0.00 0.00 0.00 4.55
5829 5962 5.344128 CCGAACCTAATTTACGTCATATCCG 59.656 44.000 0.00 0.00 0.00 4.18
5830 5963 6.449698 TCCGAACCTAATTTACGTCATATCC 58.550 40.000 0.00 0.00 0.00 2.59
5831 5964 9.286946 CTATCCGAACCTAATTTACGTCATATC 57.713 37.037 0.00 0.00 0.00 1.63
5832 5965 8.248945 CCTATCCGAACCTAATTTACGTCATAT 58.751 37.037 0.00 0.00 0.00 1.78
5833 5966 7.309377 CCCTATCCGAACCTAATTTACGTCATA 60.309 40.741 0.00 0.00 0.00 2.15
5834 5967 6.453092 CCTATCCGAACCTAATTTACGTCAT 58.547 40.000 0.00 0.00 0.00 3.06
5835 5968 5.221303 CCCTATCCGAACCTAATTTACGTCA 60.221 44.000 0.00 0.00 0.00 4.35
5836 5969 5.010012 TCCCTATCCGAACCTAATTTACGTC 59.990 44.000 0.00 0.00 0.00 4.34
5837 5970 4.895297 TCCCTATCCGAACCTAATTTACGT 59.105 41.667 0.00 0.00 0.00 3.57
5838 5971 5.458041 TCCCTATCCGAACCTAATTTACG 57.542 43.478 0.00 0.00 0.00 3.18
5839 5972 5.699915 GCTTCCCTATCCGAACCTAATTTAC 59.300 44.000 0.00 0.00 0.00 2.01
5840 5973 5.510179 CGCTTCCCTATCCGAACCTAATTTA 60.510 44.000 0.00 0.00 0.00 1.40
5841 5974 4.715713 GCTTCCCTATCCGAACCTAATTT 58.284 43.478 0.00 0.00 0.00 1.82
5842 5975 3.244112 CGCTTCCCTATCCGAACCTAATT 60.244 47.826 0.00 0.00 0.00 1.40
5843 5976 2.299297 CGCTTCCCTATCCGAACCTAAT 59.701 50.000 0.00 0.00 0.00 1.73
5844 5977 1.684983 CGCTTCCCTATCCGAACCTAA 59.315 52.381 0.00 0.00 0.00 2.69
5845 5978 1.325355 CGCTTCCCTATCCGAACCTA 58.675 55.000 0.00 0.00 0.00 3.08
5846 5979 1.400530 CCGCTTCCCTATCCGAACCT 61.401 60.000 0.00 0.00 0.00 3.50
5847 5980 1.069258 CCGCTTCCCTATCCGAACC 59.931 63.158 0.00 0.00 0.00 3.62
5848 5981 1.069258 CCCGCTTCCCTATCCGAAC 59.931 63.158 0.00 0.00 0.00 3.95
5849 5982 0.471211 ATCCCGCTTCCCTATCCGAA 60.471 55.000 0.00 0.00 0.00 4.30
5850 5983 0.898789 GATCCCGCTTCCCTATCCGA 60.899 60.000 0.00 0.00 0.00 4.55
5851 5984 1.592223 GATCCCGCTTCCCTATCCG 59.408 63.158 0.00 0.00 0.00 4.18
5852 5985 0.545548 AGGATCCCGCTTCCCTATCC 60.546 60.000 8.55 0.00 37.05 2.59
5853 5986 0.899019 GAGGATCCCGCTTCCCTATC 59.101 60.000 8.55 0.00 33.45 2.08
5854 5987 0.489567 AGAGGATCCCGCTTCCCTAT 59.510 55.000 8.55 0.00 33.66 2.57
5855 5988 0.178958 GAGAGGATCCCGCTTCCCTA 60.179 60.000 8.55 0.00 32.83 3.53
5856 5989 1.458588 GAGAGGATCCCGCTTCCCT 60.459 63.158 8.55 0.00 32.83 4.20
5857 5990 2.512355 GGAGAGGATCCCGCTTCCC 61.512 68.421 8.55 1.29 43.01 3.97
5858 5991 3.143338 GGAGAGGATCCCGCTTCC 58.857 66.667 8.55 6.90 43.01 3.46
5870 6003 3.028921 GCACCTGCCTCCTGGAGAG 62.029 68.421 25.18 14.61 42.83 3.20
5871 6004 3.005539 GCACCTGCCTCCTGGAGA 61.006 66.667 25.18 5.07 34.43 3.71
5872 6005 2.600729 AAGCACCTGCCTCCTGGAG 61.601 63.158 17.02 17.02 43.38 3.86
5873 6006 2.530151 AAGCACCTGCCTCCTGGA 60.530 61.111 0.00 0.00 43.38 3.86
5874 6007 2.360852 CAAGCACCTGCCTCCTGG 60.361 66.667 0.00 0.00 43.38 4.45
5875 6008 2.360852 CCAAGCACCTGCCTCCTG 60.361 66.667 0.00 0.00 43.38 3.86
5876 6009 2.530151 TCCAAGCACCTGCCTCCT 60.530 61.111 0.00 0.00 43.38 3.69
5877 6010 2.045536 CTCCAAGCACCTGCCTCC 60.046 66.667 0.00 0.00 43.38 4.30
5878 6011 1.078567 CTCTCCAAGCACCTGCCTC 60.079 63.158 0.00 0.00 43.38 4.70
5879 6012 1.130054 TTCTCTCCAAGCACCTGCCT 61.130 55.000 0.00 0.00 43.38 4.75
5880 6013 0.250901 TTTCTCTCCAAGCACCTGCC 60.251 55.000 0.00 0.00 43.38 4.85
5881 6014 1.609208 TTTTCTCTCCAAGCACCTGC 58.391 50.000 0.00 0.00 42.49 4.85
5898 6031 0.186386 TGACCCCGGACCACATTTTT 59.814 50.000 0.73 0.00 0.00 1.94
5899 6032 0.186386 TTGACCCCGGACCACATTTT 59.814 50.000 0.73 0.00 0.00 1.82
5900 6033 0.186386 TTTGACCCCGGACCACATTT 59.814 50.000 0.73 0.00 0.00 2.32
5901 6034 0.186386 TTTTGACCCCGGACCACATT 59.814 50.000 0.73 0.00 0.00 2.71
5902 6035 0.251165 CTTTTGACCCCGGACCACAT 60.251 55.000 0.73 0.00 0.00 3.21
5903 6036 1.149627 CTTTTGACCCCGGACCACA 59.850 57.895 0.73 0.00 0.00 4.17
5904 6037 2.265904 GCTTTTGACCCCGGACCAC 61.266 63.158 0.73 0.00 0.00 4.16
5905 6038 2.114411 GCTTTTGACCCCGGACCA 59.886 61.111 0.73 0.00 0.00 4.02
5906 6039 1.971695 CAGCTTTTGACCCCGGACC 60.972 63.158 0.73 0.00 0.00 4.46
5907 6040 1.971695 CCAGCTTTTGACCCCGGAC 60.972 63.158 0.73 0.00 0.00 4.79
5908 6041 1.710996 TTCCAGCTTTTGACCCCGGA 61.711 55.000 0.73 0.00 0.00 5.14
5909 6042 0.825840 TTTCCAGCTTTTGACCCCGG 60.826 55.000 0.00 0.00 0.00 5.73
5910 6043 0.598065 CTTTCCAGCTTTTGACCCCG 59.402 55.000 0.00 0.00 0.00 5.73
5911 6044 0.969149 CCTTTCCAGCTTTTGACCCC 59.031 55.000 0.00 0.00 0.00 4.95
5912 6045 1.704641 ACCTTTCCAGCTTTTGACCC 58.295 50.000 0.00 0.00 0.00 4.46
5913 6046 2.224042 CCAACCTTTCCAGCTTTTGACC 60.224 50.000 0.00 0.00 0.00 4.02
5914 6047 2.693074 TCCAACCTTTCCAGCTTTTGAC 59.307 45.455 0.00 0.00 0.00 3.18
5915 6048 2.958355 CTCCAACCTTTCCAGCTTTTGA 59.042 45.455 0.00 0.00 0.00 2.69
5916 6049 2.695147 ACTCCAACCTTTCCAGCTTTTG 59.305 45.455 0.00 0.00 0.00 2.44
5917 6050 2.695147 CACTCCAACCTTTCCAGCTTTT 59.305 45.455 0.00 0.00 0.00 2.27
5918 6051 2.310538 CACTCCAACCTTTCCAGCTTT 58.689 47.619 0.00 0.00 0.00 3.51
5919 6052 1.479389 CCACTCCAACCTTTCCAGCTT 60.479 52.381 0.00 0.00 0.00 3.74
5920 6053 0.111253 CCACTCCAACCTTTCCAGCT 59.889 55.000 0.00 0.00 0.00 4.24
5921 6054 0.110486 TCCACTCCAACCTTTCCAGC 59.890 55.000 0.00 0.00 0.00 4.85
5922 6055 2.656947 TTCCACTCCAACCTTTCCAG 57.343 50.000 0.00 0.00 0.00 3.86
5923 6056 2.243736 ACTTTCCACTCCAACCTTTCCA 59.756 45.455 0.00 0.00 0.00 3.53
5924 6057 2.945456 ACTTTCCACTCCAACCTTTCC 58.055 47.619 0.00 0.00 0.00 3.13
5925 6058 4.969484 TCTACTTTCCACTCCAACCTTTC 58.031 43.478 0.00 0.00 0.00 2.62
5926 6059 4.658901 TCTCTACTTTCCACTCCAACCTTT 59.341 41.667 0.00 0.00 0.00 3.11
5927 6060 4.232091 TCTCTACTTTCCACTCCAACCTT 58.768 43.478 0.00 0.00 0.00 3.50
5928 6061 3.858135 TCTCTACTTTCCACTCCAACCT 58.142 45.455 0.00 0.00 0.00 3.50
5929 6062 4.508662 CATCTCTACTTTCCACTCCAACC 58.491 47.826 0.00 0.00 0.00 3.77
5930 6063 3.935828 GCATCTCTACTTTCCACTCCAAC 59.064 47.826 0.00 0.00 0.00 3.77
5931 6064 3.582647 TGCATCTCTACTTTCCACTCCAA 59.417 43.478 0.00 0.00 0.00 3.53
5932 6065 3.173151 TGCATCTCTACTTTCCACTCCA 58.827 45.455 0.00 0.00 0.00 3.86
5933 6066 3.895232 TGCATCTCTACTTTCCACTCC 57.105 47.619 0.00 0.00 0.00 3.85
5934 6067 4.569966 CACATGCATCTCTACTTTCCACTC 59.430 45.833 0.00 0.00 0.00 3.51
5935 6068 4.019860 ACACATGCATCTCTACTTTCCACT 60.020 41.667 0.00 0.00 0.00 4.00
5936 6069 4.256920 ACACATGCATCTCTACTTTCCAC 58.743 43.478 0.00 0.00 0.00 4.02
5937 6070 4.558226 ACACATGCATCTCTACTTTCCA 57.442 40.909 0.00 0.00 0.00 3.53
5938 6071 6.595716 ACTTTACACATGCATCTCTACTTTCC 59.404 38.462 0.00 0.00 0.00 3.13
5939 6072 7.547370 AGACTTTACACATGCATCTCTACTTTC 59.453 37.037 0.00 0.00 0.00 2.62
5940 6073 7.390027 AGACTTTACACATGCATCTCTACTTT 58.610 34.615 0.00 0.00 0.00 2.66
5941 6074 6.940739 AGACTTTACACATGCATCTCTACTT 58.059 36.000 0.00 0.00 0.00 2.24
5942 6075 6.537453 AGACTTTACACATGCATCTCTACT 57.463 37.500 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.