Multiple sequence alignment - TraesCS5B01G189900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G189900 chr5B 100.000 3260 0 0 1 3260 343953545 343950286 0.000000e+00 6021.0
1 TraesCS5B01G189900 chr5B 95.306 1683 53 9 780 2450 340134545 340136213 0.000000e+00 2647.0
2 TraesCS5B01G189900 chr5B 95.306 1683 53 9 780 2450 340324618 340326286 0.000000e+00 2647.0
3 TraesCS5B01G189900 chr5B 96.601 1530 43 2 924 2450 339977841 339979364 0.000000e+00 2529.0
4 TraesCS5B01G189900 chr5B 94.467 1482 63 9 924 2393 340567696 340569170 0.000000e+00 2265.0
5 TraesCS5B01G189900 chr5B 88.620 1775 126 28 730 2450 344241083 344239331 0.000000e+00 2089.0
6 TraesCS5B01G189900 chr5B 86.531 1767 113 43 715 2410 340609651 340611363 0.000000e+00 1829.0
7 TraesCS5B01G189900 chr5B 97.809 639 14 0 2621 3259 339979353 339979991 0.000000e+00 1103.0
8 TraesCS5B01G189900 chr5B 99.701 335 1 0 2925 3259 340136533 340136867 5.980000e-172 614.0
9 TraesCS5B01G189900 chr5B 99.701 335 1 0 2925 3259 340326606 340326940 5.980000e-172 614.0
10 TraesCS5B01G189900 chr5B 90.347 404 35 3 2621 3022 344239342 344238941 8.010000e-146 527.0
11 TraesCS5B01G189900 chr5B 95.611 319 13 1 2621 2939 340136202 340136519 8.070000e-141 510.0
12 TraesCS5B01G189900 chr5B 95.611 319 13 1 2621 2939 340326275 340326592 8.070000e-141 510.0
13 TraesCS5B01G189900 chr5B 100.000 176 0 0 2445 2620 407048547 407048722 3.140000e-85 326.0
14 TraesCS5B01G189900 chr5B 91.880 234 8 2 3025 3258 344232832 344232610 1.890000e-82 316.0
15 TraesCS5B01G189900 chr5B 97.238 181 3 2 2448 2628 665001865 665001687 4.090000e-79 305.0
16 TraesCS5B01G189900 chr5B 86.207 232 24 6 29 256 340613190 340613417 9.040000e-61 244.0
17 TraesCS5B01G189900 chr5B 83.735 166 21 2 722 882 339977680 339977844 5.630000e-33 152.0
18 TraesCS5B01G189900 chr5B 92.593 108 3 1 780 882 340567592 340567699 2.030000e-32 150.0
19 TraesCS5B01G189900 chr5B 88.034 117 13 1 28 144 340573008 340573123 1.580000e-28 137.0
20 TraesCS5B01G189900 chr5B 85.859 99 2 1 207 293 340609052 340609150 9.630000e-16 95.3
21 TraesCS5B01G189900 chr5D 92.617 1666 85 14 780 2418 299388755 299390409 0.000000e+00 2361.0
22 TraesCS5B01G189900 chr5D 90.068 1752 116 26 682 2394 300323451 300321719 0.000000e+00 2218.0
23 TraesCS5B01G189900 chr5D 90.034 1746 103 21 737 2450 300147497 300145791 0.000000e+00 2194.0
24 TraesCS5B01G189900 chr5D 87.402 1786 144 39 725 2447 300955467 300957234 0.000000e+00 1977.0
25 TraesCS5B01G189900 chr5D 85.984 1748 145 28 726 2410 299068418 299070128 0.000000e+00 1779.0
26 TraesCS5B01G189900 chr5D 97.344 640 16 1 2621 3260 300145802 300145164 0.000000e+00 1086.0
27 TraesCS5B01G189900 chr5D 88.029 685 55 14 686 1354 299004276 299004949 0.000000e+00 785.0
28 TraesCS5B01G189900 chr5D 87.215 657 55 9 2621 3259 300314755 300314110 0.000000e+00 721.0
29 TraesCS5B01G189900 chr5D 93.696 349 8 3 2912 3259 300957630 300957965 8.070000e-141 510.0
30 TraesCS5B01G189900 chr5D 81.544 298 42 8 2157 2451 300155330 300155043 1.960000e-57 233.0
31 TraesCS5B01G189900 chr5D 87.000 200 22 3 27 224 299391831 299392028 4.230000e-54 222.0
32 TraesCS5B01G189900 chr5D 94.783 115 6 0 2336 2450 300314858 300314744 2.580000e-41 180.0
33 TraesCS5B01G189900 chr5D 84.375 128 2 3 335 459 299068094 299068206 3.440000e-20 110.0
34 TraesCS5B01G189900 chr5D 90.244 82 6 1 177 256 300319042 300318961 4.450000e-19 106.0
35 TraesCS5B01G189900 chr5D 94.000 50 1 1 244 293 299068066 299068113 1.250000e-09 75.0
36 TraesCS5B01G189900 chr5A 88.605 1720 128 23 768 2450 396415631 396417319 0.000000e+00 2028.0
37 TraesCS5B01G189900 chr5A 86.533 1745 155 35 725 2429 398051340 398049636 0.000000e+00 1847.0
38 TraesCS5B01G189900 chr5A 87.645 1643 122 25 840 2450 397786961 397785368 0.000000e+00 1834.0
39 TraesCS5B01G189900 chr5A 94.393 642 31 3 2621 3259 397785379 397784740 0.000000e+00 981.0
40 TraesCS5B01G189900 chr5A 93.125 480 28 3 2783 3259 396417410 396417887 0.000000e+00 699.0
41 TraesCS5B01G189900 chr7B 98.864 176 2 0 2446 2621 717040609 717040784 6.790000e-82 315.0
42 TraesCS5B01G189900 chr7B 93.000 200 13 1 2428 2627 18504748 18504550 1.140000e-74 291.0
43 TraesCS5B01G189900 chr1B 98.864 176 2 0 2445 2620 558516263 558516438 6.790000e-82 315.0
44 TraesCS5B01G189900 chr1B 94.330 194 11 0 2436 2629 61612031 61612224 6.840000e-77 298.0
45 TraesCS5B01G189900 chr1B 94.764 191 8 2 2443 2632 25246237 25246048 2.460000e-76 296.0
46 TraesCS5B01G189900 chr3B 99.422 173 0 1 2448 2620 306558978 306558807 2.440000e-81 313.0
47 TraesCS5B01G189900 chr2B 98.857 175 2 0 2446 2620 256082814 256082988 2.440000e-81 313.0
48 TraesCS5B01G189900 chr2B 95.361 194 6 3 2437 2628 785746237 785746429 4.090000e-79 305.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G189900 chr5B 343950286 343953545 3259 True 6021.000000 6021 100.000000 1 3260 1 chr5B.!!$R1 3259
1 TraesCS5B01G189900 chr5B 344238941 344241083 2142 True 1308.000000 2089 89.483500 730 3022 2 chr5B.!!$R4 2292
2 TraesCS5B01G189900 chr5B 339977680 339979991 2311 False 1261.333333 2529 92.715000 722 3259 3 chr5B.!!$F2 2537
3 TraesCS5B01G189900 chr5B 340134545 340136867 2322 False 1257.000000 2647 96.872667 780 3259 3 chr5B.!!$F3 2479
4 TraesCS5B01G189900 chr5B 340324618 340326940 2322 False 1257.000000 2647 96.872667 780 3259 3 chr5B.!!$F4 2479
5 TraesCS5B01G189900 chr5B 340567592 340573123 5531 False 850.666667 2265 91.698000 28 2393 3 chr5B.!!$F5 2365
6 TraesCS5B01G189900 chr5B 340609052 340613417 4365 False 722.766667 1829 86.199000 29 2410 3 chr5B.!!$F6 2381
7 TraesCS5B01G189900 chr5D 300145164 300147497 2333 True 1640.000000 2194 93.689000 737 3260 2 chr5D.!!$R2 2523
8 TraesCS5B01G189900 chr5D 299388755 299392028 3273 False 1291.500000 2361 89.808500 27 2418 2 chr5D.!!$F3 2391
9 TraesCS5B01G189900 chr5D 300955467 300957965 2498 False 1243.500000 1977 90.549000 725 3259 2 chr5D.!!$F4 2534
10 TraesCS5B01G189900 chr5D 300318961 300323451 4490 True 1162.000000 2218 90.156000 177 2394 2 chr5D.!!$R4 2217
11 TraesCS5B01G189900 chr5D 299004276 299004949 673 False 785.000000 785 88.029000 686 1354 1 chr5D.!!$F1 668
12 TraesCS5B01G189900 chr5D 299068066 299070128 2062 False 654.666667 1779 88.119667 244 2410 3 chr5D.!!$F2 2166
13 TraesCS5B01G189900 chr5D 300314110 300314858 748 True 450.500000 721 90.999000 2336 3259 2 chr5D.!!$R3 923
14 TraesCS5B01G189900 chr5A 398049636 398051340 1704 True 1847.000000 1847 86.533000 725 2429 1 chr5A.!!$R1 1704
15 TraesCS5B01G189900 chr5A 397784740 397786961 2221 True 1407.500000 1834 91.019000 840 3259 2 chr5A.!!$R2 2419
16 TraesCS5B01G189900 chr5A 396415631 396417887 2256 False 1363.500000 2028 90.865000 768 3259 2 chr5A.!!$F1 2491

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
166 167 0.033366 GGCTGGCGTCCAAACATTTT 59.967 50.0 0.35 0.0 30.80 1.82 F
551 654 0.035439 TTTTCGGAGGATCTGGTGCC 60.035 55.0 0.00 0.0 43.33 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1264 1622 0.321996 GACGCCTTCCTCTTCTTGGT 59.678 55.0 0.0 0.0 0.0 3.67 R
2528 6166 0.744057 CCCACATCAGCATACACGCA 60.744 55.0 0.0 0.0 0.0 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.747177 TCCGGATGGACAATAGACAGT 58.253 47.619 0.00 0.00 40.17 3.55
23 24 2.693591 TCCGGATGGACAATAGACAGTC 59.306 50.000 0.00 0.00 40.17 3.51
76 77 9.715123 TTTAATATTTTCATACACATCGTGCTG 57.285 29.630 0.00 0.00 36.98 4.41
77 78 7.552458 AATATTTTCATACACATCGTGCTGA 57.448 32.000 0.00 0.00 36.98 4.26
78 79 4.926860 TTTTCATACACATCGTGCTGAG 57.073 40.909 0.00 0.00 36.98 3.35
79 80 2.584492 TCATACACATCGTGCTGAGG 57.416 50.000 0.00 0.00 36.98 3.86
80 81 0.933097 CATACACATCGTGCTGAGGC 59.067 55.000 0.00 0.00 36.98 4.70
81 82 0.528466 ATACACATCGTGCTGAGGCG 60.528 55.000 0.00 0.00 42.25 5.52
82 83 1.591504 TACACATCGTGCTGAGGCGA 61.592 55.000 0.00 0.00 42.25 5.54
83 84 2.163390 CACATCGTGCTGAGGCGAG 61.163 63.158 0.00 0.00 40.56 5.03
84 85 3.260483 CATCGTGCTGAGGCGAGC 61.260 66.667 4.76 4.76 40.56 5.03
85 86 4.521062 ATCGTGCTGAGGCGAGCC 62.521 66.667 5.89 5.89 40.56 4.70
97 98 2.357517 CGAGCCGAGGCAACAGTT 60.358 61.111 17.18 0.00 44.88 3.16
98 99 2.671177 CGAGCCGAGGCAACAGTTG 61.671 63.158 17.18 9.12 44.88 3.16
99 100 1.598130 GAGCCGAGGCAACAGTTGT 60.598 57.895 17.18 0.00 44.88 3.32
100 101 1.152963 AGCCGAGGCAACAGTTGTT 60.153 52.632 17.18 3.79 44.88 2.83
101 102 1.166531 AGCCGAGGCAACAGTTGTTC 61.167 55.000 17.18 11.44 44.88 3.18
102 103 1.569493 CCGAGGCAACAGTTGTTCG 59.431 57.895 24.02 24.02 38.60 3.95
103 104 1.157870 CCGAGGCAACAGTTGTTCGT 61.158 55.000 26.46 11.64 37.82 3.85
104 105 0.232303 CGAGGCAACAGTTGTTCGTC 59.768 55.000 23.26 14.63 35.83 4.20
105 106 0.586802 GAGGCAACAGTTGTTCGTCC 59.413 55.000 14.88 6.93 35.83 4.79
106 107 0.818040 AGGCAACAGTTGTTCGTCCC 60.818 55.000 14.88 6.24 35.83 4.46
107 108 1.278637 GCAACAGTTGTTCGTCCCG 59.721 57.895 14.88 0.00 35.83 5.14
108 109 1.155424 GCAACAGTTGTTCGTCCCGA 61.155 55.000 14.88 0.00 35.83 5.14
109 110 0.859232 CAACAGTTGTTCGTCCCGAG 59.141 55.000 4.99 0.00 37.14 4.63
110 111 0.878961 AACAGTTGTTCGTCCCGAGC 60.879 55.000 0.00 0.00 37.14 5.03
111 112 2.049433 AGTTGTTCGTCCCGAGCG 60.049 61.111 0.00 0.00 39.81 5.03
112 113 3.774702 GTTGTTCGTCCCGAGCGC 61.775 66.667 0.00 0.00 39.81 5.92
113 114 4.287781 TTGTTCGTCCCGAGCGCA 62.288 61.111 11.47 0.00 39.81 6.09
119 120 3.039588 GTCCCGAGCGCACGAAAA 61.040 61.111 28.63 10.23 35.09 2.29
120 121 3.039588 TCCCGAGCGCACGAAAAC 61.040 61.111 28.63 0.10 35.09 2.43
121 122 3.041940 CCCGAGCGCACGAAAACT 61.042 61.111 28.63 0.00 35.09 2.66
122 123 2.604174 CCCGAGCGCACGAAAACTT 61.604 57.895 28.63 0.00 35.09 2.66
123 124 1.286354 CCCGAGCGCACGAAAACTTA 61.286 55.000 28.63 0.00 35.09 2.24
124 125 0.179258 CCGAGCGCACGAAAACTTAC 60.179 55.000 28.63 0.00 35.09 2.34
125 126 0.505231 CGAGCGCACGAAAACTTACA 59.495 50.000 23.01 0.00 35.09 2.41
126 127 1.126113 CGAGCGCACGAAAACTTACAT 59.874 47.619 23.01 0.00 35.09 2.29
127 128 2.495939 GAGCGCACGAAAACTTACATG 58.504 47.619 11.47 0.00 0.00 3.21
128 129 1.196808 AGCGCACGAAAACTTACATGG 59.803 47.619 11.47 0.00 0.00 3.66
129 130 1.727857 GCGCACGAAAACTTACATGGG 60.728 52.381 0.30 0.00 0.00 4.00
130 131 1.727857 CGCACGAAAACTTACATGGGC 60.728 52.381 0.00 0.00 0.00 5.36
131 132 1.402325 GCACGAAAACTTACATGGGCC 60.402 52.381 0.00 0.00 0.00 5.80
132 133 1.201414 CACGAAAACTTACATGGGCCC 59.799 52.381 17.59 17.59 0.00 5.80
133 134 1.202952 ACGAAAACTTACATGGGCCCA 60.203 47.619 30.92 30.92 0.00 5.36
134 135 1.201414 CGAAAACTTACATGGGCCCAC 59.799 52.381 31.51 9.41 0.00 4.61
135 136 2.243810 GAAAACTTACATGGGCCCACA 58.756 47.619 31.51 13.28 0.00 4.17
136 137 1.923356 AAACTTACATGGGCCCACAG 58.077 50.000 31.51 25.54 0.00 3.66
137 138 0.611896 AACTTACATGGGCCCACAGC 60.612 55.000 31.51 0.00 42.60 4.40
163 164 3.055719 CGGCTGGCGTCCAAACAT 61.056 61.111 16.07 0.00 30.80 2.71
164 165 2.625823 CGGCTGGCGTCCAAACATT 61.626 57.895 16.07 0.00 30.80 2.71
165 166 1.665442 GGCTGGCGTCCAAACATTT 59.335 52.632 0.35 0.00 30.80 2.32
166 167 0.033366 GGCTGGCGTCCAAACATTTT 59.967 50.000 0.35 0.00 30.80 1.82
167 168 1.271102 GGCTGGCGTCCAAACATTTTA 59.729 47.619 0.35 0.00 30.80 1.52
168 169 2.595386 GCTGGCGTCCAAACATTTTAG 58.405 47.619 0.35 0.00 30.80 1.85
169 170 2.030274 GCTGGCGTCCAAACATTTTAGT 60.030 45.455 0.35 0.00 30.80 2.24
170 171 3.564511 CTGGCGTCCAAACATTTTAGTG 58.435 45.455 0.35 0.00 30.80 2.74
171 172 2.294791 TGGCGTCCAAACATTTTAGTGG 59.705 45.455 0.00 0.00 0.00 4.00
172 173 2.352323 GGCGTCCAAACATTTTAGTGGG 60.352 50.000 0.00 0.00 0.00 4.61
173 174 2.924880 GCGTCCAAACATTTTAGTGGGC 60.925 50.000 0.00 0.00 32.20 5.36
174 175 2.556622 CGTCCAAACATTTTAGTGGGCT 59.443 45.455 0.00 0.00 33.43 5.19
175 176 3.754323 CGTCCAAACATTTTAGTGGGCTA 59.246 43.478 0.00 0.00 33.43 3.93
176 177 4.216687 CGTCCAAACATTTTAGTGGGCTAA 59.783 41.667 0.00 0.00 33.43 3.09
177 178 5.619086 CGTCCAAACATTTTAGTGGGCTAAG 60.619 44.000 0.00 0.00 38.31 2.18
178 179 4.770010 TCCAAACATTTTAGTGGGCTAAGG 59.230 41.667 0.00 0.00 38.31 2.69
179 180 4.494484 CAAACATTTTAGTGGGCTAAGGC 58.506 43.478 0.00 0.00 38.31 4.35
195 196 6.229561 GCTAAGGCCGATAAAATCTAACAG 57.770 41.667 0.00 0.00 0.00 3.16
196 197 5.989777 GCTAAGGCCGATAAAATCTAACAGA 59.010 40.000 0.00 0.00 0.00 3.41
197 198 6.482308 GCTAAGGCCGATAAAATCTAACAGAA 59.518 38.462 0.00 0.00 0.00 3.02
198 199 7.012044 GCTAAGGCCGATAAAATCTAACAGAAA 59.988 37.037 0.00 0.00 0.00 2.52
199 200 6.927294 AGGCCGATAAAATCTAACAGAAAG 57.073 37.500 0.00 0.00 0.00 2.62
200 201 5.297029 AGGCCGATAAAATCTAACAGAAAGC 59.703 40.000 0.00 0.00 0.00 3.51
201 202 5.065988 GGCCGATAAAATCTAACAGAAAGCA 59.934 40.000 0.00 0.00 0.00 3.91
202 203 6.195165 GCCGATAAAATCTAACAGAAAGCAG 58.805 40.000 0.00 0.00 0.00 4.24
203 204 6.037172 GCCGATAAAATCTAACAGAAAGCAGA 59.963 38.462 0.00 0.00 0.00 4.26
204 205 7.625553 CCGATAAAATCTAACAGAAAGCAGAG 58.374 38.462 0.00 0.00 0.00 3.35
205 206 7.122550 CGATAAAATCTAACAGAAAGCAGAGC 58.877 38.462 0.00 0.00 0.00 4.09
206 207 7.201556 CGATAAAATCTAACAGAAAGCAGAGCA 60.202 37.037 0.00 0.00 0.00 4.26
207 208 5.619625 AAATCTAACAGAAAGCAGAGCAC 57.380 39.130 0.00 0.00 0.00 4.40
208 209 3.045601 TCTAACAGAAAGCAGAGCACC 57.954 47.619 0.00 0.00 0.00 5.01
209 210 2.634940 TCTAACAGAAAGCAGAGCACCT 59.365 45.455 0.00 0.00 0.00 4.00
210 211 1.602311 AACAGAAAGCAGAGCACCTG 58.398 50.000 2.18 2.18 45.67 4.00
211 212 0.761187 ACAGAAAGCAGAGCACCTGA 59.239 50.000 9.90 0.00 45.78 3.86
212 213 1.155042 CAGAAAGCAGAGCACCTGAC 58.845 55.000 9.90 2.44 45.78 3.51
213 214 0.036022 AGAAAGCAGAGCACCTGACC 59.964 55.000 9.90 0.00 45.78 4.02
214 215 0.250467 GAAAGCAGAGCACCTGACCA 60.250 55.000 9.90 0.00 45.78 4.02
215 216 0.403271 AAAGCAGAGCACCTGACCAT 59.597 50.000 9.90 0.00 45.78 3.55
216 217 0.322277 AAGCAGAGCACCTGACCATG 60.322 55.000 9.90 0.00 45.78 3.66
229 230 2.428236 CCATGCGCGCGTGAAAAA 60.428 55.556 45.38 20.96 35.09 1.94
298 311 8.965172 CAGAAATAGCTGATCACATATTTTTGC 58.035 33.333 17.04 7.30 38.14 3.68
299 312 8.139989 AGAAATAGCTGATCACATATTTTTGCC 58.860 33.333 16.18 8.08 30.13 4.52
300 313 7.592885 AATAGCTGATCACATATTTTTGCCT 57.407 32.000 0.00 0.00 0.00 4.75
301 314 8.696043 AATAGCTGATCACATATTTTTGCCTA 57.304 30.769 0.00 0.00 0.00 3.93
302 315 8.696043 ATAGCTGATCACATATTTTTGCCTAA 57.304 30.769 0.00 0.00 0.00 2.69
303 316 7.408756 AGCTGATCACATATTTTTGCCTAAA 57.591 32.000 0.00 0.00 0.00 1.85
304 317 7.839907 AGCTGATCACATATTTTTGCCTAAAA 58.160 30.769 0.00 0.00 39.88 1.52
305 318 8.313292 AGCTGATCACATATTTTTGCCTAAAAA 58.687 29.630 0.00 0.00 46.42 1.94
329 342 7.692460 AAAAGCTGATCACATATTTGTCTCA 57.308 32.000 0.00 0.00 32.34 3.27
330 343 6.674694 AAGCTGATCACATATTTGTCTCAC 57.325 37.500 0.00 0.00 32.34 3.51
331 344 5.737860 AGCTGATCACATATTTGTCTCACA 58.262 37.500 0.00 0.00 32.34 3.58
332 345 6.175471 AGCTGATCACATATTTGTCTCACAA 58.825 36.000 0.00 0.00 36.11 3.33
344 357 5.895636 TTGTCTCACAAAAGAAAAGCTGA 57.104 34.783 0.00 0.00 34.76 4.26
345 358 6.455360 TTGTCTCACAAAAGAAAAGCTGAT 57.545 33.333 0.00 0.00 34.76 2.90
346 359 6.064846 TGTCTCACAAAAGAAAAGCTGATC 57.935 37.500 0.00 0.00 0.00 2.92
347 360 5.589855 TGTCTCACAAAAGAAAAGCTGATCA 59.410 36.000 0.00 0.00 0.00 2.92
348 361 5.911838 GTCTCACAAAAGAAAAGCTGATCAC 59.088 40.000 0.00 0.00 0.00 3.06
349 362 5.589855 TCTCACAAAAGAAAAGCTGATCACA 59.410 36.000 0.00 0.00 0.00 3.58
350 363 6.263842 TCTCACAAAAGAAAAGCTGATCACAT 59.736 34.615 0.00 0.00 0.00 3.21
351 364 7.445096 TCTCACAAAAGAAAAGCTGATCACATA 59.555 33.333 0.00 0.00 0.00 2.29
352 365 8.114331 TCACAAAAGAAAAGCTGATCACATAT 57.886 30.769 0.00 0.00 0.00 1.78
377 390 3.593442 TTGGTCTTTGGAGGACATTGT 57.407 42.857 0.00 0.00 35.61 2.71
396 409 5.818136 TTGTCAACTTTCCTCTTCACTTG 57.182 39.130 0.00 0.00 0.00 3.16
397 410 4.843728 TGTCAACTTTCCTCTTCACTTGT 58.156 39.130 0.00 0.00 0.00 3.16
479 582 6.043411 GCTCATACCGATTTCTTAGAGTGTT 58.957 40.000 0.00 0.00 0.00 3.32
505 608 1.599047 CAGATCCGGCACCTGTTCT 59.401 57.895 0.00 0.00 0.00 3.01
521 624 1.544691 GTTCTCCTTGCTGTCGGTCTA 59.455 52.381 0.00 0.00 0.00 2.59
531 634 0.454600 TGTCGGTCTACAGATTCCGC 59.545 55.000 3.96 1.48 42.28 5.54
547 650 2.682893 CGCTTTTCGGAGGATCTGG 58.317 57.895 0.00 0.00 43.33 3.86
548 651 0.108138 CGCTTTTCGGAGGATCTGGT 60.108 55.000 0.00 0.00 43.33 4.00
549 652 1.373570 GCTTTTCGGAGGATCTGGTG 58.626 55.000 0.00 0.00 43.33 4.17
550 653 1.373570 CTTTTCGGAGGATCTGGTGC 58.626 55.000 0.00 0.00 43.33 5.01
551 654 0.035439 TTTTCGGAGGATCTGGTGCC 60.035 55.000 0.00 0.00 43.33 5.01
552 655 0.909610 TTTCGGAGGATCTGGTGCCT 60.910 55.000 0.00 0.00 43.33 4.75
568 679 1.348696 TGCCTGATCTTGTCTTGCAGA 59.651 47.619 0.00 0.00 32.71 4.26
581 711 4.250116 TCTTGCAGAAGACTCAAGACTC 57.750 45.455 1.26 0.00 40.63 3.36
588 718 5.460646 CAGAAGACTCAAGACTCAAGACTC 58.539 45.833 0.00 0.00 0.00 3.36
591 721 5.195001 AGACTCAAGACTCAAGACTCAAC 57.805 43.478 0.00 0.00 0.00 3.18
592 722 4.892934 AGACTCAAGACTCAAGACTCAACT 59.107 41.667 0.00 0.00 0.00 3.16
594 724 4.646945 ACTCAAGACTCAAGACTCAACTCA 59.353 41.667 0.00 0.00 0.00 3.41
595 725 5.127845 ACTCAAGACTCAAGACTCAACTCAA 59.872 40.000 0.00 0.00 0.00 3.02
596 726 5.352284 TCAAGACTCAAGACTCAACTCAAC 58.648 41.667 0.00 0.00 0.00 3.18
597 727 5.127845 TCAAGACTCAAGACTCAACTCAACT 59.872 40.000 0.00 0.00 0.00 3.16
598 728 5.606348 AGACTCAAGACTCAACTCAACTT 57.394 39.130 0.00 0.00 0.00 2.66
602 732 5.940470 ACTCAAGACTCAACTCAACTTTGTT 59.060 36.000 0.00 0.00 0.00 2.83
603 733 6.431234 ACTCAAGACTCAACTCAACTTTGTTT 59.569 34.615 0.00 0.00 0.00 2.83
607 737 6.410540 AGACTCAACTCAACTTTGTTTCTCT 58.589 36.000 0.00 0.00 0.00 3.10
611 741 7.824779 ACTCAACTCAACTTTGTTTCTCTTACT 59.175 33.333 0.00 0.00 0.00 2.24
613 743 9.832445 TCAACTCAACTTTGTTTCTCTTACTAT 57.168 29.630 0.00 0.00 0.00 2.12
616 746 7.661847 ACTCAACTTTGTTTCTCTTACTATGGG 59.338 37.037 0.00 0.00 0.00 4.00
617 747 7.514721 TCAACTTTGTTTCTCTTACTATGGGT 58.485 34.615 0.00 0.00 0.00 4.51
618 748 7.444183 TCAACTTTGTTTCTCTTACTATGGGTG 59.556 37.037 0.00 0.00 0.00 4.61
619 749 6.238648 ACTTTGTTTCTCTTACTATGGGTGG 58.761 40.000 0.00 0.00 0.00 4.61
621 751 3.054655 TGTTTCTCTTACTATGGGTGGCC 60.055 47.826 0.00 0.00 0.00 5.36
623 753 0.393077 CTCTTACTATGGGTGGCCGG 59.607 60.000 0.00 0.00 0.00 6.13
624 754 1.052124 TCTTACTATGGGTGGCCGGG 61.052 60.000 2.18 0.00 0.00 5.73
625 755 1.307170 TTACTATGGGTGGCCGGGT 60.307 57.895 2.18 0.00 0.00 5.28
626 756 1.628238 TTACTATGGGTGGCCGGGTG 61.628 60.000 2.18 0.00 0.00 4.61
627 757 2.533037 TACTATGGGTGGCCGGGTGA 62.533 60.000 2.18 0.00 0.00 4.02
882 1158 2.299867 CAATAAAAGGCAGCCAACCTGT 59.700 45.455 15.80 0.00 43.71 4.00
929 1214 4.357325 ACCAATCTTCTCTTCTCCAGCTA 58.643 43.478 0.00 0.00 0.00 3.32
1128 1480 0.320050 GGGAGATGGAGATCCTTCGC 59.680 60.000 9.20 9.20 42.94 4.70
1257 1615 0.250727 CAAGGTTCTTGGCCGAGGAA 60.251 55.000 20.46 10.23 0.00 3.36
1296 1654 4.097361 GCGTCCCCTCCAGTTCCC 62.097 72.222 0.00 0.00 0.00 3.97
1377 1735 2.185608 GCGGAAGACCTGGAGCTC 59.814 66.667 4.71 4.71 0.00 4.09
1563 1924 4.028490 TCGCCCCAAGAACGCCAT 62.028 61.111 0.00 0.00 0.00 4.40
1598 1968 1.306141 TGATGGCCGAAGAGGAGGT 60.306 57.895 0.00 0.00 45.00 3.85
1823 2209 3.128188 CTCCAGCAGCAGCAGCAG 61.128 66.667 12.92 3.65 45.49 4.24
1990 2405 2.125229 CATGTGAGCAGCTCGCCT 60.125 61.111 29.14 19.17 44.04 5.52
2139 2554 2.741517 CGGCATTGATGAGTACAACACA 59.258 45.455 0.00 0.00 0.00 3.72
2454 6092 9.347934 TCTTTGTACACATGTTTAACAGTTTTG 57.652 29.630 3.63 0.00 0.00 2.44
2455 6093 7.513190 TTGTACACATGTTTAACAGTTTTGC 57.487 32.000 3.63 0.00 0.00 3.68
2456 6094 6.857956 TGTACACATGTTTAACAGTTTTGCT 58.142 32.000 3.63 0.00 0.00 3.91
2458 6096 8.126074 TGTACACATGTTTAACAGTTTTGCTAG 58.874 33.333 3.63 0.00 0.00 3.42
2461 6099 7.700656 ACACATGTTTAACAGTTTTGCTAGAAC 59.299 33.333 3.63 0.00 0.00 3.01
2462 6100 7.915397 CACATGTTTAACAGTTTTGCTAGAACT 59.085 33.333 3.63 0.00 37.82 3.01
2463 6101 8.129211 ACATGTTTAACAGTTTTGCTAGAACTC 58.871 33.333 3.63 0.00 35.26 3.01
2466 6104 8.342634 TGTTTAACAGTTTTGCTAGAACTCATC 58.657 33.333 0.00 0.00 35.26 2.92
2467 6105 8.560374 GTTTAACAGTTTTGCTAGAACTCATCT 58.440 33.333 0.00 0.00 42.48 2.90
2496 6134 7.500992 TGAGATATAGTTTGGTCTCATTCACC 58.499 38.462 0.16 0.00 41.40 4.02
2497 6135 7.345653 TGAGATATAGTTTGGTCTCATTCACCT 59.654 37.037 0.16 0.00 41.40 4.00
2498 6136 8.095452 AGATATAGTTTGGTCTCATTCACCTT 57.905 34.615 0.00 0.00 34.66 3.50
2499 6137 8.552296 AGATATAGTTTGGTCTCATTCACCTTT 58.448 33.333 0.00 0.00 34.66 3.11
2500 6138 9.178758 GATATAGTTTGGTCTCATTCACCTTTT 57.821 33.333 0.00 0.00 34.66 2.27
2504 6142 8.567285 AGTTTGGTCTCATTCACCTTTTATAG 57.433 34.615 0.00 0.00 34.66 1.31
2505 6143 7.121315 AGTTTGGTCTCATTCACCTTTTATAGC 59.879 37.037 0.00 0.00 34.66 2.97
2506 6144 5.437060 TGGTCTCATTCACCTTTTATAGCC 58.563 41.667 0.00 0.00 34.66 3.93
2507 6145 5.045213 TGGTCTCATTCACCTTTTATAGCCA 60.045 40.000 0.00 0.00 34.66 4.75
2508 6146 6.064717 GGTCTCATTCACCTTTTATAGCCAT 58.935 40.000 0.00 0.00 0.00 4.40
2509 6147 6.547510 GGTCTCATTCACCTTTTATAGCCATT 59.452 38.462 0.00 0.00 0.00 3.16
2510 6148 7.420800 GTCTCATTCACCTTTTATAGCCATTG 58.579 38.462 0.00 0.00 0.00 2.82
2511 6149 6.547141 TCTCATTCACCTTTTATAGCCATTGG 59.453 38.462 0.00 0.00 0.00 3.16
2512 6150 6.430864 TCATTCACCTTTTATAGCCATTGGA 58.569 36.000 6.95 0.00 0.00 3.53
2513 6151 7.068702 TCATTCACCTTTTATAGCCATTGGAT 58.931 34.615 6.95 1.78 0.00 3.41
2514 6152 6.713762 TTCACCTTTTATAGCCATTGGATG 57.286 37.500 6.95 0.00 0.00 3.51
2515 6153 5.765510 TCACCTTTTATAGCCATTGGATGT 58.234 37.500 6.95 0.10 0.00 3.06
2516 6154 5.593909 TCACCTTTTATAGCCATTGGATGTG 59.406 40.000 6.95 2.95 0.00 3.21
2517 6155 5.593909 CACCTTTTATAGCCATTGGATGTGA 59.406 40.000 6.95 0.00 0.00 3.58
2518 6156 6.266103 CACCTTTTATAGCCATTGGATGTGAT 59.734 38.462 6.95 0.00 0.00 3.06
2519 6157 6.266103 ACCTTTTATAGCCATTGGATGTGATG 59.734 38.462 6.95 0.00 0.00 3.07
2520 6158 5.710513 TTTATAGCCATTGGATGTGATGC 57.289 39.130 6.95 0.00 0.00 3.91
2521 6159 3.520691 ATAGCCATTGGATGTGATGCT 57.479 42.857 6.95 0.00 0.00 3.79
2522 6160 4.645863 ATAGCCATTGGATGTGATGCTA 57.354 40.909 6.95 0.00 0.00 3.49
2523 6161 3.520691 AGCCATTGGATGTGATGCTAT 57.479 42.857 6.95 0.00 0.00 2.97
2524 6162 4.645863 AGCCATTGGATGTGATGCTATA 57.354 40.909 6.95 0.00 0.00 1.31
2525 6163 4.989277 AGCCATTGGATGTGATGCTATAA 58.011 39.130 6.95 0.00 0.00 0.98
2526 6164 5.008331 AGCCATTGGATGTGATGCTATAAG 58.992 41.667 6.95 0.00 0.00 1.73
2527 6165 5.005740 GCCATTGGATGTGATGCTATAAGA 58.994 41.667 6.95 0.00 0.00 2.10
2528 6166 5.651139 GCCATTGGATGTGATGCTATAAGAT 59.349 40.000 6.95 0.00 0.00 2.40
2529 6167 6.404403 GCCATTGGATGTGATGCTATAAGATG 60.404 42.308 6.95 0.00 0.00 2.90
2530 6168 6.404403 CCATTGGATGTGATGCTATAAGATGC 60.404 42.308 0.00 0.00 0.00 3.91
2531 6169 4.248058 TGGATGTGATGCTATAAGATGCG 58.752 43.478 0.00 0.00 0.00 4.73
2532 6170 4.248859 GGATGTGATGCTATAAGATGCGT 58.751 43.478 0.00 0.00 0.00 5.24
2533 6171 4.092529 GGATGTGATGCTATAAGATGCGTG 59.907 45.833 0.00 0.00 0.00 5.34
2534 6172 4.058721 TGTGATGCTATAAGATGCGTGT 57.941 40.909 0.00 0.00 0.00 4.49
2535 6173 5.195001 TGTGATGCTATAAGATGCGTGTA 57.805 39.130 0.00 0.00 0.00 2.90
2536 6174 5.783111 TGTGATGCTATAAGATGCGTGTAT 58.217 37.500 0.00 0.00 0.00 2.29
2537 6175 5.634859 TGTGATGCTATAAGATGCGTGTATG 59.365 40.000 0.00 0.00 0.00 2.39
2538 6176 4.627035 TGATGCTATAAGATGCGTGTATGC 59.373 41.667 0.00 0.00 0.00 3.14
2539 6177 4.257267 TGCTATAAGATGCGTGTATGCT 57.743 40.909 0.00 0.00 35.36 3.79
2540 6178 3.989817 TGCTATAAGATGCGTGTATGCTG 59.010 43.478 0.00 0.00 35.36 4.41
2541 6179 4.237724 GCTATAAGATGCGTGTATGCTGA 58.762 43.478 0.00 0.00 35.36 4.26
2542 6180 4.867047 GCTATAAGATGCGTGTATGCTGAT 59.133 41.667 0.00 0.00 35.36 2.90
2543 6181 5.220359 GCTATAAGATGCGTGTATGCTGATG 60.220 44.000 0.00 0.00 35.36 3.07
2544 6182 2.609427 AGATGCGTGTATGCTGATGT 57.391 45.000 0.00 0.00 35.36 3.06
2545 6183 2.207590 AGATGCGTGTATGCTGATGTG 58.792 47.619 0.00 0.00 35.36 3.21
2546 6184 1.262417 GATGCGTGTATGCTGATGTGG 59.738 52.381 0.00 0.00 35.36 4.17
2547 6185 0.744057 TGCGTGTATGCTGATGTGGG 60.744 55.000 0.00 0.00 35.36 4.61
2548 6186 0.744414 GCGTGTATGCTGATGTGGGT 60.744 55.000 0.00 0.00 0.00 4.51
2549 6187 1.737838 CGTGTATGCTGATGTGGGTT 58.262 50.000 0.00 0.00 0.00 4.11
2550 6188 1.398041 CGTGTATGCTGATGTGGGTTG 59.602 52.381 0.00 0.00 0.00 3.77
2551 6189 2.436417 GTGTATGCTGATGTGGGTTGT 58.564 47.619 0.00 0.00 0.00 3.32
2552 6190 3.605634 GTGTATGCTGATGTGGGTTGTA 58.394 45.455 0.00 0.00 0.00 2.41
2553 6191 4.199310 GTGTATGCTGATGTGGGTTGTAT 58.801 43.478 0.00 0.00 0.00 2.29
2554 6192 4.273480 GTGTATGCTGATGTGGGTTGTATC 59.727 45.833 0.00 0.00 0.00 2.24
2555 6193 3.939740 ATGCTGATGTGGGTTGTATCT 57.060 42.857 0.00 0.00 0.00 1.98
2556 6194 2.989909 TGCTGATGTGGGTTGTATCTG 58.010 47.619 0.00 0.00 0.00 2.90
2557 6195 2.305635 TGCTGATGTGGGTTGTATCTGT 59.694 45.455 0.00 0.00 0.00 3.41
2558 6196 3.244875 TGCTGATGTGGGTTGTATCTGTT 60.245 43.478 0.00 0.00 0.00 3.16
2559 6197 3.375299 GCTGATGTGGGTTGTATCTGTTC 59.625 47.826 0.00 0.00 0.00 3.18
2560 6198 4.836825 CTGATGTGGGTTGTATCTGTTCT 58.163 43.478 0.00 0.00 0.00 3.01
2561 6199 5.241403 TGATGTGGGTTGTATCTGTTCTT 57.759 39.130 0.00 0.00 0.00 2.52
2562 6200 5.003160 TGATGTGGGTTGTATCTGTTCTTG 58.997 41.667 0.00 0.00 0.00 3.02
2563 6201 4.431416 TGTGGGTTGTATCTGTTCTTGT 57.569 40.909 0.00 0.00 0.00 3.16
2564 6202 4.787551 TGTGGGTTGTATCTGTTCTTGTT 58.212 39.130 0.00 0.00 0.00 2.83
2565 6203 5.197451 TGTGGGTTGTATCTGTTCTTGTTT 58.803 37.500 0.00 0.00 0.00 2.83
2566 6204 5.654650 TGTGGGTTGTATCTGTTCTTGTTTT 59.345 36.000 0.00 0.00 0.00 2.43
2567 6205 6.183360 TGTGGGTTGTATCTGTTCTTGTTTTC 60.183 38.462 0.00 0.00 0.00 2.29
2568 6206 5.888724 TGGGTTGTATCTGTTCTTGTTTTCA 59.111 36.000 0.00 0.00 0.00 2.69
2569 6207 6.378564 TGGGTTGTATCTGTTCTTGTTTTCAA 59.621 34.615 0.00 0.00 38.21 2.69
2570 6208 7.093727 TGGGTTGTATCTGTTCTTGTTTTCAAA 60.094 33.333 0.00 0.00 39.47 2.69
2571 6209 7.435192 GGGTTGTATCTGTTCTTGTTTTCAAAG 59.565 37.037 0.00 0.00 39.47 2.77
2572 6210 7.973944 GGTTGTATCTGTTCTTGTTTTCAAAGT 59.026 33.333 0.00 0.00 39.47 2.66
2573 6211 8.798153 GTTGTATCTGTTCTTGTTTTCAAAGTG 58.202 33.333 0.00 0.00 39.47 3.16
2574 6212 8.275015 TGTATCTGTTCTTGTTTTCAAAGTGA 57.725 30.769 0.00 0.00 39.47 3.41
2575 6213 8.735315 TGTATCTGTTCTTGTTTTCAAAGTGAA 58.265 29.630 0.00 0.00 39.47 3.18
2576 6214 9.736023 GTATCTGTTCTTGTTTTCAAAGTGAAT 57.264 29.630 0.00 0.00 39.47 2.57
2577 6215 8.638685 ATCTGTTCTTGTTTTCAAAGTGAATG 57.361 30.769 0.00 0.00 39.47 2.67
2578 6216 7.825681 TCTGTTCTTGTTTTCAAAGTGAATGA 58.174 30.769 0.00 0.00 39.47 2.57
2579 6217 7.970061 TCTGTTCTTGTTTTCAAAGTGAATGAG 59.030 33.333 0.00 0.00 39.47 2.90
2580 6218 7.825681 TGTTCTTGTTTTCAAAGTGAATGAGA 58.174 30.769 0.00 0.00 39.47 3.27
2581 6219 7.754924 TGTTCTTGTTTTCAAAGTGAATGAGAC 59.245 33.333 0.00 0.00 39.47 3.36
2582 6220 6.795399 TCTTGTTTTCAAAGTGAATGAGACC 58.205 36.000 0.00 0.00 39.47 3.85
2583 6221 6.376864 TCTTGTTTTCAAAGTGAATGAGACCA 59.623 34.615 0.00 0.00 39.47 4.02
2584 6222 6.522625 TGTTTTCAAAGTGAATGAGACCAA 57.477 33.333 0.00 0.00 36.11 3.67
2585 6223 6.929625 TGTTTTCAAAGTGAATGAGACCAAA 58.070 32.000 0.00 0.00 36.11 3.28
2586 6224 7.555087 TGTTTTCAAAGTGAATGAGACCAAAT 58.445 30.769 0.00 0.00 36.11 2.32
2587 6225 8.040132 TGTTTTCAAAGTGAATGAGACCAAATT 58.960 29.630 0.00 0.00 36.11 1.82
2588 6226 9.528018 GTTTTCAAAGTGAATGAGACCAAATTA 57.472 29.630 0.00 0.00 36.11 1.40
2619 6257 2.393646 AGATGAGTTCTAGGCACTCCC 58.606 52.381 16.20 10.39 40.12 4.30
2620 6258 1.414550 GATGAGTTCTAGGCACTCCCC 59.585 57.143 16.20 7.70 40.12 4.81
2621 6259 0.116342 TGAGTTCTAGGCACTCCCCA 59.884 55.000 16.20 1.46 40.12 4.96
2622 6260 1.273838 TGAGTTCTAGGCACTCCCCAT 60.274 52.381 16.20 0.00 40.12 4.00
2623 6261 1.139853 GAGTTCTAGGCACTCCCCATG 59.860 57.143 10.44 0.00 41.75 3.66
2624 6262 0.912486 GTTCTAGGCACTCCCCATGT 59.088 55.000 0.00 0.00 41.75 3.21
2625 6263 1.282157 GTTCTAGGCACTCCCCATGTT 59.718 52.381 0.00 0.00 41.75 2.71
2626 6264 1.668826 TCTAGGCACTCCCCATGTTT 58.331 50.000 0.00 0.00 41.75 2.83
2627 6265 2.840511 TCTAGGCACTCCCCATGTTTA 58.159 47.619 0.00 0.00 41.75 2.01
2628 6266 3.186283 TCTAGGCACTCCCCATGTTTAA 58.814 45.455 0.00 0.00 41.75 1.52
2629 6267 2.215942 AGGCACTCCCCATGTTTAAC 57.784 50.000 0.00 0.00 0.00 2.01
2630 6268 1.427368 AGGCACTCCCCATGTTTAACA 59.573 47.619 0.00 0.00 0.00 2.41
2631 6269 1.818674 GGCACTCCCCATGTTTAACAG 59.181 52.381 3.63 0.00 0.00 3.16
2685 6326 7.026562 TGAATATTTAACATGAACCGCAAGTG 58.973 34.615 0.00 0.00 0.00 3.16
2756 6405 7.885297 TGAGAATAGGACCACAAAATTTCAAG 58.115 34.615 0.00 0.00 0.00 3.02
2760 6409 5.096443 AGGACCACAAAATTTCAAGCAAA 57.904 34.783 0.00 0.00 0.00 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.070159 ACTGTCTATTGTCCATCCGGATG 59.930 47.826 33.52 33.52 45.33 3.51
1 2 3.309296 ACTGTCTATTGTCCATCCGGAT 58.691 45.455 12.38 12.38 45.33 4.18
50 51 9.715123 CAGCACGATGTGTATGAAAATATTAAA 57.285 29.630 0.00 0.00 35.75 1.52
51 52 9.103861 TCAGCACGATGTGTATGAAAATATTAA 57.896 29.630 0.00 0.00 35.75 1.40
52 53 8.655651 TCAGCACGATGTGTATGAAAATATTA 57.344 30.769 0.00 0.00 35.75 0.98
53 54 7.254898 CCTCAGCACGATGTGTATGAAAATATT 60.255 37.037 0.00 0.00 35.75 1.28
54 55 6.203530 CCTCAGCACGATGTGTATGAAAATAT 59.796 38.462 0.00 0.00 35.75 1.28
55 56 5.523552 CCTCAGCACGATGTGTATGAAAATA 59.476 40.000 0.00 0.00 35.75 1.40
56 57 4.333649 CCTCAGCACGATGTGTATGAAAAT 59.666 41.667 0.00 0.00 35.75 1.82
57 58 3.684305 CCTCAGCACGATGTGTATGAAAA 59.316 43.478 0.00 0.00 35.75 2.29
58 59 3.261580 CCTCAGCACGATGTGTATGAAA 58.738 45.455 0.00 0.00 35.75 2.69
59 60 2.892374 CCTCAGCACGATGTGTATGAA 58.108 47.619 0.00 0.00 35.75 2.57
60 61 1.471501 GCCTCAGCACGATGTGTATGA 60.472 52.381 0.00 3.42 39.53 2.15
61 62 0.933097 GCCTCAGCACGATGTGTATG 59.067 55.000 0.00 0.00 39.53 2.39
62 63 0.528466 CGCCTCAGCACGATGTGTAT 60.528 55.000 0.00 0.00 39.83 2.29
63 64 1.153842 CGCCTCAGCACGATGTGTA 60.154 57.895 0.00 0.00 39.83 2.90
64 65 2.433145 CGCCTCAGCACGATGTGT 60.433 61.111 0.00 0.00 39.83 3.72
65 66 2.125952 TCGCCTCAGCACGATGTG 60.126 61.111 0.00 0.00 39.83 3.21
66 67 2.182791 CTCGCCTCAGCACGATGT 59.817 61.111 0.00 0.00 39.83 3.06
67 68 3.260483 GCTCGCCTCAGCACGATG 61.260 66.667 0.00 0.00 39.43 3.84
68 69 4.521062 GGCTCGCCTCAGCACGAT 62.521 66.667 0.00 0.00 41.65 3.73
80 81 2.357517 AACTGTTGCCTCGGCTCG 60.358 61.111 9.65 0.00 42.51 5.03
81 82 1.166531 AACAACTGTTGCCTCGGCTC 61.167 55.000 19.82 3.43 42.51 4.70
82 83 1.152963 AACAACTGTTGCCTCGGCT 60.153 52.632 19.82 0.00 42.51 5.52
83 84 1.282875 GAACAACTGTTGCCTCGGC 59.717 57.895 19.82 0.00 38.56 5.54
84 85 1.157870 ACGAACAACTGTTGCCTCGG 61.158 55.000 31.50 20.95 41.14 4.63
85 86 0.232303 GACGAACAACTGTTGCCTCG 59.768 55.000 29.03 29.03 42.00 4.63
86 87 0.586802 GGACGAACAACTGTTGCCTC 59.413 55.000 19.82 14.97 38.56 4.70
87 88 0.818040 GGGACGAACAACTGTTGCCT 60.818 55.000 19.82 7.88 38.56 4.75
88 89 1.652563 GGGACGAACAACTGTTGCC 59.347 57.895 19.82 12.15 38.56 4.52
102 103 3.039588 TTTTCGTGCGCTCGGGAC 61.040 61.111 28.87 8.40 0.00 4.46
103 104 2.981977 AAGTTTTCGTGCGCTCGGGA 62.982 55.000 28.87 16.61 0.00 5.14
104 105 1.286354 TAAGTTTTCGTGCGCTCGGG 61.286 55.000 28.87 5.05 0.00 5.14
105 106 0.179258 GTAAGTTTTCGTGCGCTCGG 60.179 55.000 28.87 12.60 0.00 4.63
106 107 0.505231 TGTAAGTTTTCGTGCGCTCG 59.495 50.000 24.68 24.68 0.00 5.03
107 108 2.495939 CATGTAAGTTTTCGTGCGCTC 58.504 47.619 9.73 3.51 0.00 5.03
108 109 1.196808 CCATGTAAGTTTTCGTGCGCT 59.803 47.619 9.73 0.00 0.00 5.92
109 110 1.602191 CCATGTAAGTTTTCGTGCGC 58.398 50.000 0.00 0.00 0.00 6.09
110 111 1.727857 GCCCATGTAAGTTTTCGTGCG 60.728 52.381 0.00 0.00 0.00 5.34
111 112 1.402325 GGCCCATGTAAGTTTTCGTGC 60.402 52.381 0.00 0.00 0.00 5.34
112 113 1.201414 GGGCCCATGTAAGTTTTCGTG 59.799 52.381 19.95 0.00 0.00 4.35
113 114 1.202952 TGGGCCCATGTAAGTTTTCGT 60.203 47.619 24.45 0.00 0.00 3.85
114 115 1.201414 GTGGGCCCATGTAAGTTTTCG 59.799 52.381 31.45 0.00 0.00 3.46
115 116 2.231235 CTGTGGGCCCATGTAAGTTTTC 59.769 50.000 31.45 11.59 0.00 2.29
116 117 2.247358 CTGTGGGCCCATGTAAGTTTT 58.753 47.619 31.45 0.00 0.00 2.43
117 118 1.923356 CTGTGGGCCCATGTAAGTTT 58.077 50.000 31.45 0.00 0.00 2.66
118 119 0.611896 GCTGTGGGCCCATGTAAGTT 60.612 55.000 31.45 0.00 34.27 2.66
119 120 1.000896 GCTGTGGGCCCATGTAAGT 60.001 57.895 31.45 0.00 34.27 2.24
120 121 3.924507 GCTGTGGGCCCATGTAAG 58.075 61.111 31.45 23.00 34.27 2.34
146 147 2.141122 AAATGTTTGGACGCCAGCCG 62.141 55.000 0.00 0.00 44.21 5.52
147 148 0.033366 AAAATGTTTGGACGCCAGCC 59.967 50.000 0.00 0.00 33.81 4.85
148 149 2.030274 ACTAAAATGTTTGGACGCCAGC 60.030 45.455 0.00 0.00 33.81 4.85
149 150 3.564511 CACTAAAATGTTTGGACGCCAG 58.435 45.455 0.00 0.00 33.81 4.85
150 151 2.294791 CCACTAAAATGTTTGGACGCCA 59.705 45.455 0.00 0.00 0.00 5.69
151 152 2.352323 CCCACTAAAATGTTTGGACGCC 60.352 50.000 0.00 0.00 0.00 5.68
152 153 2.924880 GCCCACTAAAATGTTTGGACGC 60.925 50.000 0.00 0.00 0.00 5.19
153 154 2.556622 AGCCCACTAAAATGTTTGGACG 59.443 45.455 0.00 0.00 0.00 4.79
154 155 5.336451 CCTTAGCCCACTAAAATGTTTGGAC 60.336 44.000 0.00 0.00 37.91 4.02
155 156 4.770010 CCTTAGCCCACTAAAATGTTTGGA 59.230 41.667 0.00 0.00 37.91 3.53
156 157 4.620567 GCCTTAGCCCACTAAAATGTTTGG 60.621 45.833 0.00 0.00 37.91 3.28
157 158 4.494484 GCCTTAGCCCACTAAAATGTTTG 58.506 43.478 0.00 0.00 37.91 2.93
158 159 4.801330 GCCTTAGCCCACTAAAATGTTT 57.199 40.909 0.00 0.00 37.91 2.83
172 173 5.989777 TCTGTTAGATTTTATCGGCCTTAGC 59.010 40.000 0.00 0.00 38.76 3.09
173 174 8.433421 TTTCTGTTAGATTTTATCGGCCTTAG 57.567 34.615 0.00 0.00 0.00 2.18
174 175 7.012044 GCTTTCTGTTAGATTTTATCGGCCTTA 59.988 37.037 0.00 0.00 0.00 2.69
175 176 6.183360 GCTTTCTGTTAGATTTTATCGGCCTT 60.183 38.462 0.00 0.00 0.00 4.35
176 177 5.297029 GCTTTCTGTTAGATTTTATCGGCCT 59.703 40.000 0.00 0.00 0.00 5.19
177 178 5.065988 TGCTTTCTGTTAGATTTTATCGGCC 59.934 40.000 0.00 0.00 0.00 6.13
178 179 6.037172 TCTGCTTTCTGTTAGATTTTATCGGC 59.963 38.462 0.00 0.00 0.00 5.54
179 180 7.539712 TCTGCTTTCTGTTAGATTTTATCGG 57.460 36.000 0.00 0.00 0.00 4.18
180 181 7.122550 GCTCTGCTTTCTGTTAGATTTTATCG 58.877 38.462 0.00 0.00 0.00 2.92
181 182 7.907563 GTGCTCTGCTTTCTGTTAGATTTTATC 59.092 37.037 0.00 0.00 0.00 1.75
182 183 7.148171 GGTGCTCTGCTTTCTGTTAGATTTTAT 60.148 37.037 0.00 0.00 0.00 1.40
183 184 6.149474 GGTGCTCTGCTTTCTGTTAGATTTTA 59.851 38.462 0.00 0.00 0.00 1.52
184 185 5.048434 GGTGCTCTGCTTTCTGTTAGATTTT 60.048 40.000 0.00 0.00 0.00 1.82
185 186 4.457257 GGTGCTCTGCTTTCTGTTAGATTT 59.543 41.667 0.00 0.00 0.00 2.17
186 187 4.006319 GGTGCTCTGCTTTCTGTTAGATT 58.994 43.478 0.00 0.00 0.00 2.40
187 188 3.262915 AGGTGCTCTGCTTTCTGTTAGAT 59.737 43.478 0.00 0.00 0.00 1.98
188 189 2.634940 AGGTGCTCTGCTTTCTGTTAGA 59.365 45.455 0.00 0.00 0.00 2.10
189 190 2.740981 CAGGTGCTCTGCTTTCTGTTAG 59.259 50.000 0.00 0.00 36.60 2.34
190 191 2.368548 TCAGGTGCTCTGCTTTCTGTTA 59.631 45.455 3.29 0.00 43.06 2.41
191 192 1.141657 TCAGGTGCTCTGCTTTCTGTT 59.858 47.619 3.29 0.00 43.06 3.16
192 193 0.761187 TCAGGTGCTCTGCTTTCTGT 59.239 50.000 3.29 0.00 43.06 3.41
193 194 1.155042 GTCAGGTGCTCTGCTTTCTG 58.845 55.000 3.29 0.00 43.06 3.02
194 195 0.036022 GGTCAGGTGCTCTGCTTTCT 59.964 55.000 3.29 0.00 43.06 2.52
195 196 0.250467 TGGTCAGGTGCTCTGCTTTC 60.250 55.000 3.29 0.00 43.06 2.62
196 197 0.403271 ATGGTCAGGTGCTCTGCTTT 59.597 50.000 3.29 0.00 43.06 3.51
197 198 0.322277 CATGGTCAGGTGCTCTGCTT 60.322 55.000 3.29 0.00 43.06 3.91
198 199 1.298993 CATGGTCAGGTGCTCTGCT 59.701 57.895 3.29 0.00 43.06 4.24
199 200 2.404995 GCATGGTCAGGTGCTCTGC 61.405 63.158 0.00 0.00 43.06 4.26
200 201 2.104859 CGCATGGTCAGGTGCTCTG 61.105 63.158 0.00 1.94 44.68 3.35
201 202 2.267006 CGCATGGTCAGGTGCTCT 59.733 61.111 0.00 0.00 39.16 4.09
202 203 3.503363 GCGCATGGTCAGGTGCTC 61.503 66.667 12.93 0.00 44.17 4.26
210 211 3.587342 TTTTCACGCGCGCATGGTC 62.587 57.895 32.58 0.00 0.00 4.02
211 212 2.470801 ATTTTTCACGCGCGCATGGT 62.471 50.000 32.58 18.50 0.00 3.55
212 213 1.801113 ATTTTTCACGCGCGCATGG 60.801 52.632 32.58 19.27 0.00 3.66
213 214 1.337810 CATTTTTCACGCGCGCATG 59.662 52.632 32.58 28.01 0.00 4.06
214 215 2.435737 GCATTTTTCACGCGCGCAT 61.436 52.632 32.58 14.98 0.00 4.73
215 216 2.997621 AAGCATTTTTCACGCGCGCA 62.998 50.000 32.58 14.87 0.00 6.09
216 217 2.253424 GAAGCATTTTTCACGCGCGC 62.253 55.000 32.58 23.91 0.00 6.86
229 230 5.009010 ACGATCAAAACAGAAACTGAAGCAT 59.991 36.000 5.76 0.00 35.18 3.79
304 317 8.025445 GTGAGACAAATATGTGATCAGCTTTTT 58.975 33.333 0.00 0.00 40.74 1.94
305 318 7.175467 TGTGAGACAAATATGTGATCAGCTTTT 59.825 33.333 0.00 0.00 40.74 2.27
306 319 6.656270 TGTGAGACAAATATGTGATCAGCTTT 59.344 34.615 0.00 0.00 40.74 3.51
307 320 6.175471 TGTGAGACAAATATGTGATCAGCTT 58.825 36.000 0.00 0.00 40.74 3.74
308 321 5.737860 TGTGAGACAAATATGTGATCAGCT 58.262 37.500 0.00 0.00 40.74 4.24
309 322 6.426980 TTGTGAGACAAATATGTGATCAGC 57.573 37.500 0.00 0.00 40.74 4.26
310 323 8.724229 TCTTTTGTGAGACAAATATGTGATCAG 58.276 33.333 0.00 0.00 46.17 2.90
311 324 8.620116 TCTTTTGTGAGACAAATATGTGATCA 57.380 30.769 0.00 0.88 46.17 2.92
312 325 9.897744 TTTCTTTTGTGAGACAAATATGTGATC 57.102 29.630 0.00 0.00 46.17 2.92
314 327 9.734620 CTTTTCTTTTGTGAGACAAATATGTGA 57.265 29.630 0.00 0.00 46.17 3.58
315 328 8.482429 GCTTTTCTTTTGTGAGACAAATATGTG 58.518 33.333 2.87 0.00 46.17 3.21
316 329 8.416329 AGCTTTTCTTTTGTGAGACAAATATGT 58.584 29.630 2.87 0.00 46.17 2.29
317 330 8.697067 CAGCTTTTCTTTTGTGAGACAAATATG 58.303 33.333 2.87 0.00 46.17 1.78
318 331 8.632679 TCAGCTTTTCTTTTGTGAGACAAATAT 58.367 29.630 2.87 0.00 46.17 1.28
319 332 7.995289 TCAGCTTTTCTTTTGTGAGACAAATA 58.005 30.769 2.87 0.00 46.17 1.40
320 333 6.866480 TCAGCTTTTCTTTTGTGAGACAAAT 58.134 32.000 2.87 0.00 46.17 2.32
321 334 6.266168 TCAGCTTTTCTTTTGTGAGACAAA 57.734 33.333 0.00 0.00 45.37 2.83
322 335 5.895636 TCAGCTTTTCTTTTGTGAGACAA 57.104 34.783 0.00 0.00 36.11 3.18
323 336 5.589855 TGATCAGCTTTTCTTTTGTGAGACA 59.410 36.000 0.00 0.00 0.00 3.41
324 337 5.911838 GTGATCAGCTTTTCTTTTGTGAGAC 59.088 40.000 0.00 0.00 0.00 3.36
325 338 5.589855 TGTGATCAGCTTTTCTTTTGTGAGA 59.410 36.000 0.00 0.00 0.00 3.27
326 339 5.824429 TGTGATCAGCTTTTCTTTTGTGAG 58.176 37.500 0.00 0.00 0.00 3.51
327 340 5.833406 TGTGATCAGCTTTTCTTTTGTGA 57.167 34.783 0.00 0.00 0.00 3.58
328 341 9.499585 CTATATGTGATCAGCTTTTCTTTTGTG 57.500 33.333 0.00 0.00 0.00 3.33
329 342 8.186821 GCTATATGTGATCAGCTTTTCTTTTGT 58.813 33.333 0.00 0.00 0.00 2.83
330 343 8.404000 AGCTATATGTGATCAGCTTTTCTTTTG 58.596 33.333 0.00 0.00 41.50 2.44
331 344 8.517062 AGCTATATGTGATCAGCTTTTCTTTT 57.483 30.769 0.00 0.00 41.50 2.27
339 352 5.071519 AGACCAAAGCTATATGTGATCAGCT 59.928 40.000 0.00 0.00 46.05 4.24
340 353 5.303971 AGACCAAAGCTATATGTGATCAGC 58.696 41.667 0.00 0.00 0.00 4.26
341 354 7.255035 CCAAAGACCAAAGCTATATGTGATCAG 60.255 40.741 0.00 0.00 0.00 2.90
342 355 6.543465 CCAAAGACCAAAGCTATATGTGATCA 59.457 38.462 0.00 0.00 0.00 2.92
343 356 6.767902 TCCAAAGACCAAAGCTATATGTGATC 59.232 38.462 0.00 0.00 0.00 2.92
344 357 6.662755 TCCAAAGACCAAAGCTATATGTGAT 58.337 36.000 0.00 0.00 0.00 3.06
345 358 6.061022 TCCAAAGACCAAAGCTATATGTGA 57.939 37.500 0.00 0.00 0.00 3.58
346 359 5.297776 CCTCCAAAGACCAAAGCTATATGTG 59.702 44.000 0.00 0.00 0.00 3.21
347 360 5.191722 TCCTCCAAAGACCAAAGCTATATGT 59.808 40.000 0.00 0.00 0.00 2.29
348 361 5.529060 GTCCTCCAAAGACCAAAGCTATATG 59.471 44.000 0.00 0.00 0.00 1.78
349 362 5.191722 TGTCCTCCAAAGACCAAAGCTATAT 59.808 40.000 0.00 0.00 33.09 0.86
350 363 4.534500 TGTCCTCCAAAGACCAAAGCTATA 59.466 41.667 0.00 0.00 33.09 1.31
351 364 3.330701 TGTCCTCCAAAGACCAAAGCTAT 59.669 43.478 0.00 0.00 33.09 2.97
352 365 2.708861 TGTCCTCCAAAGACCAAAGCTA 59.291 45.455 0.00 0.00 33.09 3.32
377 390 4.843728 ACACAAGTGAAGAGGAAAGTTGA 58.156 39.130 7.28 0.00 0.00 3.18
396 409 4.995124 TCGTGCTATAGGAGAAGAAACAC 58.005 43.478 1.04 0.00 0.00 3.32
397 410 5.185249 AGTTCGTGCTATAGGAGAAGAAACA 59.815 40.000 1.04 0.00 0.00 2.83
479 582 1.979262 TGCCGGATCTGCACACTAA 59.021 52.632 5.05 0.00 32.85 2.24
505 608 0.888619 CTGTAGACCGACAGCAAGGA 59.111 55.000 0.00 0.00 40.42 3.36
531 634 1.373570 GCACCAGATCCTCCGAAAAG 58.626 55.000 0.00 0.00 0.00 2.27
540 643 1.211457 ACAAGATCAGGCACCAGATCC 59.789 52.381 16.05 2.16 40.02 3.36
541 644 2.170187 AGACAAGATCAGGCACCAGATC 59.830 50.000 12.78 12.78 39.63 2.75
542 645 2.194859 AGACAAGATCAGGCACCAGAT 58.805 47.619 0.00 0.00 0.00 2.90
543 646 1.649321 AGACAAGATCAGGCACCAGA 58.351 50.000 0.00 0.00 0.00 3.86
544 647 2.082231 CAAGACAAGATCAGGCACCAG 58.918 52.381 0.00 0.00 0.00 4.00
545 648 1.883638 GCAAGACAAGATCAGGCACCA 60.884 52.381 0.00 0.00 0.00 4.17
546 649 0.807496 GCAAGACAAGATCAGGCACC 59.193 55.000 0.00 0.00 0.00 5.01
547 650 1.467734 CTGCAAGACAAGATCAGGCAC 59.532 52.381 0.00 0.00 34.74 5.01
548 651 1.348696 TCTGCAAGACAAGATCAGGCA 59.651 47.619 0.00 0.00 38.67 4.75
549 652 2.105006 TCTGCAAGACAAGATCAGGC 57.895 50.000 0.00 0.00 38.67 4.85
568 679 5.362430 AGTTGAGTCTTGAGTCTTGAGTCTT 59.638 40.000 16.19 5.50 32.93 3.01
572 702 5.193663 TGAGTTGAGTCTTGAGTCTTGAG 57.806 43.478 6.96 0.00 0.00 3.02
581 711 6.846350 AGAAACAAAGTTGAGTTGAGTCTTG 58.154 36.000 0.00 0.00 0.00 3.02
588 718 9.869844 CATAGTAAGAGAAACAAAGTTGAGTTG 57.130 33.333 0.00 0.00 0.00 3.16
591 721 7.661847 ACCCATAGTAAGAGAAACAAAGTTGAG 59.338 37.037 0.00 0.00 0.00 3.02
592 722 7.444183 CACCCATAGTAAGAGAAACAAAGTTGA 59.556 37.037 0.00 0.00 0.00 3.18
594 724 6.715264 CCACCCATAGTAAGAGAAACAAAGTT 59.285 38.462 0.00 0.00 0.00 2.66
595 725 6.238648 CCACCCATAGTAAGAGAAACAAAGT 58.761 40.000 0.00 0.00 0.00 2.66
596 726 5.123979 GCCACCCATAGTAAGAGAAACAAAG 59.876 44.000 0.00 0.00 0.00 2.77
597 727 5.007682 GCCACCCATAGTAAGAGAAACAAA 58.992 41.667 0.00 0.00 0.00 2.83
598 728 4.566907 GGCCACCCATAGTAAGAGAAACAA 60.567 45.833 0.00 0.00 0.00 2.83
602 732 1.760613 CGGCCACCCATAGTAAGAGAA 59.239 52.381 2.24 0.00 0.00 2.87
603 733 1.410004 CGGCCACCCATAGTAAGAGA 58.590 55.000 2.24 0.00 0.00 3.10
607 737 1.307170 ACCCGGCCACCCATAGTAA 60.307 57.895 2.24 0.00 0.00 2.24
611 741 3.087253 CTCACCCGGCCACCCATA 61.087 66.667 2.24 0.00 0.00 2.74
623 753 4.385405 ACGCAGCAGCTCCTCACC 62.385 66.667 0.00 0.00 39.10 4.02
624 754 2.778309 AAGACGCAGCAGCTCCTCAC 62.778 60.000 0.00 0.00 39.10 3.51
625 755 2.104572 AAAGACGCAGCAGCTCCTCA 62.105 55.000 0.00 0.00 39.10 3.86
626 756 0.952984 AAAAGACGCAGCAGCTCCTC 60.953 55.000 0.00 0.00 39.10 3.71
627 757 0.952984 GAAAAGACGCAGCAGCTCCT 60.953 55.000 0.00 0.00 39.10 3.69
677 889 0.675837 TCCCGCCTCCTATCGTATCG 60.676 60.000 0.00 0.00 0.00 2.92
679 891 1.893801 CTTTCCCGCCTCCTATCGTAT 59.106 52.381 0.00 0.00 0.00 3.06
680 892 1.133699 TCTTTCCCGCCTCCTATCGTA 60.134 52.381 0.00 0.00 0.00 3.43
681 893 0.396695 TCTTTCCCGCCTCCTATCGT 60.397 55.000 0.00 0.00 0.00 3.73
682 894 0.750850 TTCTTTCCCGCCTCCTATCG 59.249 55.000 0.00 0.00 0.00 2.92
683 895 3.142174 CATTTCTTTCCCGCCTCCTATC 58.858 50.000 0.00 0.00 0.00 2.08
684 896 2.777692 TCATTTCTTTCCCGCCTCCTAT 59.222 45.455 0.00 0.00 0.00 2.57
882 1158 1.228552 GAGGTGAGGGCAAAGGCAA 60.229 57.895 0.00 0.00 43.71 4.52
929 1214 3.524095 TGGTGATTGGTGAAGATTGGT 57.476 42.857 0.00 0.00 0.00 3.67
1257 1615 2.657237 CTCTTCTTGGTCGGCGGT 59.343 61.111 7.21 0.00 0.00 5.68
1264 1622 0.321996 GACGCCTTCCTCTTCTTGGT 59.678 55.000 0.00 0.00 0.00 3.67
1296 1654 1.332997 GGCTTCTTGCGATTGATCAGG 59.667 52.381 0.00 0.00 44.05 3.86
1315 1673 2.099263 TCATCTTCTTCTTCGTAGGCGG 59.901 50.000 0.00 0.00 38.89 6.13
1377 1735 1.800681 GGGGATTTCCGCAACGAAG 59.199 57.895 8.66 0.00 46.98 3.79
1563 1924 2.203788 ACCTCAGGGCCGTCTTGA 60.204 61.111 0.00 0.00 35.63 3.02
1598 1968 3.653344 CCACAGATGTCAACTTCTTCGA 58.347 45.455 0.00 0.00 0.00 3.71
1818 2204 2.188849 CTGAACTGCTGCTGCTGCTG 62.189 60.000 27.75 27.75 41.07 4.41
1819 2205 1.966972 CTGAACTGCTGCTGCTGCT 60.967 57.895 27.67 11.62 41.07 4.24
1820 2206 1.306642 ATCTGAACTGCTGCTGCTGC 61.307 55.000 22.51 22.51 41.07 5.25
1821 2207 1.664659 GTATCTGAACTGCTGCTGCTG 59.335 52.381 18.66 18.66 42.70 4.41
1822 2208 1.554160 AGTATCTGAACTGCTGCTGCT 59.446 47.619 17.00 0.00 40.48 4.24
1823 2209 1.664659 CAGTATCTGAACTGCTGCTGC 59.335 52.381 8.89 8.89 40.40 5.25
1824 2210 3.242549 TCAGTATCTGAACTGCTGCTG 57.757 47.619 4.89 4.89 45.34 4.41
1825 2211 4.440880 GAATCAGTATCTGAACTGCTGCT 58.559 43.478 0.00 0.00 44.04 4.24
1990 2405 1.601759 GCTGCCTTTCCAGAGCACA 60.602 57.895 0.00 0.00 34.77 4.57
2139 2554 4.626081 ACGTTGCTGGGCTTCGCT 62.626 61.111 0.00 0.00 0.00 4.93
2155 2576 2.568090 CCCAATCTGCCGCAACAC 59.432 61.111 0.00 0.00 0.00 3.32
2472 6110 7.731054 AGGTGAATGAGACCAAACTATATCTC 58.269 38.462 0.00 0.00 38.46 2.75
2473 6111 7.682787 AGGTGAATGAGACCAAACTATATCT 57.317 36.000 0.00 0.00 35.76 1.98
2474 6112 8.738645 AAAGGTGAATGAGACCAAACTATATC 57.261 34.615 0.00 0.00 35.76 1.63
2478 6116 9.667107 CTATAAAAGGTGAATGAGACCAAACTA 57.333 33.333 0.00 0.00 35.76 2.24
2479 6117 7.121315 GCTATAAAAGGTGAATGAGACCAAACT 59.879 37.037 0.00 0.00 35.76 2.66
2480 6118 7.251281 GCTATAAAAGGTGAATGAGACCAAAC 58.749 38.462 0.00 0.00 35.76 2.93
2481 6119 6.377146 GGCTATAAAAGGTGAATGAGACCAAA 59.623 38.462 0.00 0.00 35.76 3.28
2482 6120 5.885912 GGCTATAAAAGGTGAATGAGACCAA 59.114 40.000 0.00 0.00 35.76 3.67
2483 6121 5.045213 TGGCTATAAAAGGTGAATGAGACCA 60.045 40.000 0.00 0.00 35.76 4.02
2484 6122 5.437060 TGGCTATAAAAGGTGAATGAGACC 58.563 41.667 0.00 0.00 0.00 3.85
2485 6123 7.420800 CAATGGCTATAAAAGGTGAATGAGAC 58.579 38.462 0.00 0.00 0.00 3.36
2486 6124 6.547141 CCAATGGCTATAAAAGGTGAATGAGA 59.453 38.462 0.00 0.00 0.00 3.27
2487 6125 6.547141 TCCAATGGCTATAAAAGGTGAATGAG 59.453 38.462 0.00 0.00 0.00 2.90
2488 6126 6.430864 TCCAATGGCTATAAAAGGTGAATGA 58.569 36.000 0.00 0.00 0.00 2.57
2489 6127 6.713762 TCCAATGGCTATAAAAGGTGAATG 57.286 37.500 0.00 0.00 0.00 2.67
2490 6128 6.840705 ACATCCAATGGCTATAAAAGGTGAAT 59.159 34.615 0.00 0.00 33.60 2.57
2491 6129 6.096705 CACATCCAATGGCTATAAAAGGTGAA 59.903 38.462 0.00 0.00 33.60 3.18
2492 6130 5.593909 CACATCCAATGGCTATAAAAGGTGA 59.406 40.000 0.00 0.00 33.60 4.02
2493 6131 5.593909 TCACATCCAATGGCTATAAAAGGTG 59.406 40.000 0.00 0.00 33.60 4.00
2494 6132 5.765510 TCACATCCAATGGCTATAAAAGGT 58.234 37.500 0.00 0.00 33.60 3.50
2495 6133 6.684686 CATCACATCCAATGGCTATAAAAGG 58.315 40.000 0.00 0.00 33.60 3.11
2496 6134 6.015688 AGCATCACATCCAATGGCTATAAAAG 60.016 38.462 0.00 0.00 33.60 2.27
2497 6135 5.834742 AGCATCACATCCAATGGCTATAAAA 59.165 36.000 0.00 0.00 33.60 1.52
2498 6136 5.387788 AGCATCACATCCAATGGCTATAAA 58.612 37.500 0.00 0.00 33.60 1.40
2499 6137 4.989277 AGCATCACATCCAATGGCTATAA 58.011 39.130 0.00 0.00 33.60 0.98
2500 6138 4.645863 AGCATCACATCCAATGGCTATA 57.354 40.909 0.00 0.00 33.60 1.31
2501 6139 3.520691 AGCATCACATCCAATGGCTAT 57.479 42.857 0.00 0.00 33.60 2.97
2502 6140 4.645863 ATAGCATCACATCCAATGGCTA 57.354 40.909 0.00 0.00 33.60 3.93
2503 6141 3.520691 ATAGCATCACATCCAATGGCT 57.479 42.857 0.00 0.00 33.60 4.75
2504 6142 5.005740 TCTTATAGCATCACATCCAATGGC 58.994 41.667 0.00 0.00 33.60 4.40
2505 6143 6.404403 GCATCTTATAGCATCACATCCAATGG 60.404 42.308 0.00 0.00 33.60 3.16
2506 6144 6.552629 GCATCTTATAGCATCACATCCAATG 58.447 40.000 0.00 0.00 0.00 2.82
2507 6145 5.353400 CGCATCTTATAGCATCACATCCAAT 59.647 40.000 0.00 0.00 0.00 3.16
2508 6146 4.692155 CGCATCTTATAGCATCACATCCAA 59.308 41.667 0.00 0.00 0.00 3.53
2509 6147 4.248058 CGCATCTTATAGCATCACATCCA 58.752 43.478 0.00 0.00 0.00 3.41
2510 6148 4.092529 CACGCATCTTATAGCATCACATCC 59.907 45.833 0.00 0.00 0.00 3.51
2511 6149 4.687948 ACACGCATCTTATAGCATCACATC 59.312 41.667 0.00 0.00 0.00 3.06
2512 6150 4.635223 ACACGCATCTTATAGCATCACAT 58.365 39.130 0.00 0.00 0.00 3.21
2513 6151 4.058721 ACACGCATCTTATAGCATCACA 57.941 40.909 0.00 0.00 0.00 3.58
2514 6152 5.445142 GCATACACGCATCTTATAGCATCAC 60.445 44.000 0.00 0.00 0.00 3.06
2515 6153 4.627035 GCATACACGCATCTTATAGCATCA 59.373 41.667 0.00 0.00 0.00 3.07
2516 6154 4.867047 AGCATACACGCATCTTATAGCATC 59.133 41.667 0.00 0.00 0.00 3.91
2517 6155 4.628766 CAGCATACACGCATCTTATAGCAT 59.371 41.667 0.00 0.00 0.00 3.79
2518 6156 3.989817 CAGCATACACGCATCTTATAGCA 59.010 43.478 0.00 0.00 0.00 3.49
2519 6157 4.237724 TCAGCATACACGCATCTTATAGC 58.762 43.478 0.00 0.00 0.00 2.97
2520 6158 5.866092 ACATCAGCATACACGCATCTTATAG 59.134 40.000 0.00 0.00 0.00 1.31
2521 6159 5.634859 CACATCAGCATACACGCATCTTATA 59.365 40.000 0.00 0.00 0.00 0.98
2522 6160 4.450080 CACATCAGCATACACGCATCTTAT 59.550 41.667 0.00 0.00 0.00 1.73
2523 6161 3.803778 CACATCAGCATACACGCATCTTA 59.196 43.478 0.00 0.00 0.00 2.10
2524 6162 2.610833 CACATCAGCATACACGCATCTT 59.389 45.455 0.00 0.00 0.00 2.40
2525 6163 2.207590 CACATCAGCATACACGCATCT 58.792 47.619 0.00 0.00 0.00 2.90
2526 6164 1.262417 CCACATCAGCATACACGCATC 59.738 52.381 0.00 0.00 0.00 3.91
2527 6165 1.302366 CCACATCAGCATACACGCAT 58.698 50.000 0.00 0.00 0.00 4.73
2528 6166 0.744057 CCCACATCAGCATACACGCA 60.744 55.000 0.00 0.00 0.00 5.24
2529 6167 0.744414 ACCCACATCAGCATACACGC 60.744 55.000 0.00 0.00 0.00 5.34
2530 6168 1.398041 CAACCCACATCAGCATACACG 59.602 52.381 0.00 0.00 0.00 4.49
2531 6169 2.436417 ACAACCCACATCAGCATACAC 58.564 47.619 0.00 0.00 0.00 2.90
2532 6170 2.877097 ACAACCCACATCAGCATACA 57.123 45.000 0.00 0.00 0.00 2.29
2533 6171 4.512944 CAGATACAACCCACATCAGCATAC 59.487 45.833 0.00 0.00 0.00 2.39
2534 6172 4.164030 ACAGATACAACCCACATCAGCATA 59.836 41.667 0.00 0.00 0.00 3.14
2535 6173 3.054139 ACAGATACAACCCACATCAGCAT 60.054 43.478 0.00 0.00 0.00 3.79
2536 6174 2.305635 ACAGATACAACCCACATCAGCA 59.694 45.455 0.00 0.00 0.00 4.41
2537 6175 2.991250 ACAGATACAACCCACATCAGC 58.009 47.619 0.00 0.00 0.00 4.26
2538 6176 4.836825 AGAACAGATACAACCCACATCAG 58.163 43.478 0.00 0.00 0.00 2.90
2539 6177 4.908601 AGAACAGATACAACCCACATCA 57.091 40.909 0.00 0.00 0.00 3.07
2540 6178 5.003804 ACAAGAACAGATACAACCCACATC 58.996 41.667 0.00 0.00 0.00 3.06
2541 6179 4.985538 ACAAGAACAGATACAACCCACAT 58.014 39.130 0.00 0.00 0.00 3.21
2542 6180 4.431416 ACAAGAACAGATACAACCCACA 57.569 40.909 0.00 0.00 0.00 4.17
2543 6181 5.767816 AAACAAGAACAGATACAACCCAC 57.232 39.130 0.00 0.00 0.00 4.61
2544 6182 5.888724 TGAAAACAAGAACAGATACAACCCA 59.111 36.000 0.00 0.00 0.00 4.51
2545 6183 6.385649 TGAAAACAAGAACAGATACAACCC 57.614 37.500 0.00 0.00 0.00 4.11
2546 6184 7.973944 ACTTTGAAAACAAGAACAGATACAACC 59.026 33.333 0.00 0.00 0.00 3.77
2547 6185 8.798153 CACTTTGAAAACAAGAACAGATACAAC 58.202 33.333 0.00 0.00 0.00 3.32
2548 6186 8.735315 TCACTTTGAAAACAAGAACAGATACAA 58.265 29.630 0.00 0.00 0.00 2.41
2549 6187 8.275015 TCACTTTGAAAACAAGAACAGATACA 57.725 30.769 0.00 0.00 0.00 2.29
2550 6188 9.736023 ATTCACTTTGAAAACAAGAACAGATAC 57.264 29.630 0.00 0.00 40.12 2.24
2551 6189 9.734620 CATTCACTTTGAAAACAAGAACAGATA 57.265 29.630 0.00 0.00 40.12 1.98
2552 6190 8.469200 TCATTCACTTTGAAAACAAGAACAGAT 58.531 29.630 0.00 0.00 40.12 2.90
2553 6191 7.825681 TCATTCACTTTGAAAACAAGAACAGA 58.174 30.769 0.00 0.00 40.12 3.41
2554 6192 7.970061 TCTCATTCACTTTGAAAACAAGAACAG 59.030 33.333 0.00 0.00 40.12 3.16
2555 6193 7.754924 GTCTCATTCACTTTGAAAACAAGAACA 59.245 33.333 0.00 0.00 40.12 3.18
2556 6194 7.220875 GGTCTCATTCACTTTGAAAACAAGAAC 59.779 37.037 0.00 0.00 40.12 3.01
2557 6195 7.093988 TGGTCTCATTCACTTTGAAAACAAGAA 60.094 33.333 0.00 0.00 40.12 2.52
2558 6196 6.376864 TGGTCTCATTCACTTTGAAAACAAGA 59.623 34.615 0.00 0.00 40.12 3.02
2559 6197 6.563422 TGGTCTCATTCACTTTGAAAACAAG 58.437 36.000 0.00 0.00 40.12 3.16
2560 6198 6.522625 TGGTCTCATTCACTTTGAAAACAA 57.477 33.333 0.00 0.00 40.12 2.83
2561 6199 6.522625 TTGGTCTCATTCACTTTGAAAACA 57.477 33.333 0.00 0.00 40.12 2.83
2562 6200 8.424274 AATTTGGTCTCATTCACTTTGAAAAC 57.576 30.769 0.00 0.00 40.12 2.43
2598 6236 3.567397 GGGAGTGCCTAGAACTCATCTA 58.433 50.000 20.54 0.00 44.86 1.98
2599 6237 2.393646 GGGAGTGCCTAGAACTCATCT 58.606 52.381 20.54 0.00 44.86 2.90
2600 6238 1.414550 GGGGAGTGCCTAGAACTCATC 59.585 57.143 20.54 14.11 44.86 2.92
2601 6239 1.273838 TGGGGAGTGCCTAGAACTCAT 60.274 52.381 20.54 0.00 44.86 2.90
2602 6240 0.116342 TGGGGAGTGCCTAGAACTCA 59.884 55.000 20.54 5.17 44.86 3.41
2603 6241 1.139853 CATGGGGAGTGCCTAGAACTC 59.860 57.143 14.10 14.10 42.79 3.01
2604 6242 1.207791 CATGGGGAGTGCCTAGAACT 58.792 55.000 0.00 0.00 0.00 3.01
2605 6243 0.912486 ACATGGGGAGTGCCTAGAAC 59.088 55.000 0.00 0.00 0.00 3.01
2606 6244 1.668826 AACATGGGGAGTGCCTAGAA 58.331 50.000 0.00 0.00 0.00 2.10
2607 6245 1.668826 AAACATGGGGAGTGCCTAGA 58.331 50.000 0.00 0.00 0.00 2.43
2608 6246 3.279434 GTTAAACATGGGGAGTGCCTAG 58.721 50.000 0.00 0.00 0.00 3.02
2609 6247 2.645297 TGTTAAACATGGGGAGTGCCTA 59.355 45.455 0.00 0.00 0.00 3.93
2610 6248 1.427368 TGTTAAACATGGGGAGTGCCT 59.573 47.619 0.00 0.00 0.00 4.75
2611 6249 1.818674 CTGTTAAACATGGGGAGTGCC 59.181 52.381 0.00 0.00 0.00 5.01
2612 6250 2.790433 TCTGTTAAACATGGGGAGTGC 58.210 47.619 0.00 0.00 0.00 4.40
2613 6251 6.122277 ACATATCTGTTAAACATGGGGAGTG 58.878 40.000 0.00 0.00 28.70 3.51
2614 6252 6.327386 ACATATCTGTTAAACATGGGGAGT 57.673 37.500 0.00 0.00 28.70 3.85
2615 6253 5.765182 GGACATATCTGTTAAACATGGGGAG 59.235 44.000 0.00 0.00 35.14 4.30
2616 6254 5.192722 TGGACATATCTGTTAAACATGGGGA 59.807 40.000 0.00 0.00 35.14 4.81
2617 6255 5.445069 TGGACATATCTGTTAAACATGGGG 58.555 41.667 0.00 0.00 35.14 4.96
2618 6256 7.587037 AATGGACATATCTGTTAAACATGGG 57.413 36.000 0.00 0.00 35.14 4.00
2619 6257 8.137437 GGAAATGGACATATCTGTTAAACATGG 58.863 37.037 0.00 0.00 35.14 3.66
2620 6258 8.685427 TGGAAATGGACATATCTGTTAAACATG 58.315 33.333 0.00 0.00 35.14 3.21
2621 6259 8.821686 TGGAAATGGACATATCTGTTAAACAT 57.178 30.769 0.00 0.00 35.14 2.71
2622 6260 8.642935 TTGGAAATGGACATATCTGTTAAACA 57.357 30.769 0.00 0.00 35.14 2.83
2627 6265 9.645128 TTGATATTGGAAATGGACATATCTGTT 57.355 29.630 0.00 0.00 35.14 3.16
2628 6266 9.818270 ATTGATATTGGAAATGGACATATCTGT 57.182 29.630 0.00 0.00 38.67 3.41
2779 6946 5.990668 ACTGAGCCTCCGAGTTATAAAAAT 58.009 37.500 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.