Multiple sequence alignment - TraesCS5B01G189200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G189200 chr5B 100.000 7841 0 0 1 7841 341061699 341069539 0.000000e+00 14480.0
1 TraesCS5B01G189200 chr5B 96.898 1999 61 1 3097 5095 624636824 624634827 0.000000e+00 3347.0
2 TraesCS5B01G189200 chr5B 94.749 1695 64 12 1406 3088 212407022 212408703 0.000000e+00 2614.0
3 TraesCS5B01G189200 chr5B 96.610 118 4 0 7218 7335 341068845 341068962 6.210000e-46 196.0
4 TraesCS5B01G189200 chr5B 96.610 118 4 0 7147 7264 341068916 341069033 6.210000e-46 196.0
5 TraesCS5B01G189200 chr5B 89.655 145 12 2 1153 1296 608340808 608340950 1.740000e-41 182.0
6 TraesCS5B01G189200 chr5B 97.872 47 1 0 7289 7335 341068845 341068891 1.810000e-11 82.4
7 TraesCS5B01G189200 chr5B 97.872 47 1 0 7147 7193 341068987 341069033 1.810000e-11 82.4
8 TraesCS5B01G189200 chr5B 95.455 44 2 0 5366 5409 661634315 661634272 3.930000e-08 71.3
9 TraesCS5B01G189200 chr5B 91.837 49 3 1 5358 5406 6222161 6222208 5.080000e-07 67.6
10 TraesCS5B01G189200 chr5B 100.000 30 0 0 7293 7322 74988881 74988852 1.000000e-03 56.5
11 TraesCS5B01G189200 chr5B 100.000 30 0 0 7151 7180 74988881 74988852 1.000000e-03 56.5
12 TraesCS5B01G189200 chr5B 96.875 32 0 1 7221 7251 264874323 264874292 1.400000e-02 52.8
13 TraesCS5B01G189200 chr6B 98.000 2000 38 2 3097 5095 407169970 407167972 0.000000e+00 3470.0
14 TraesCS5B01G189200 chr6B 97.849 1999 42 1 3097 5095 77621623 77619626 0.000000e+00 3452.0
15 TraesCS5B01G189200 chr6B 96.862 1689 42 5 1411 3088 608151823 608150135 0.000000e+00 2815.0
16 TraesCS5B01G189200 chr6B 89.474 76 2 6 276 347 14523406 14523333 3.010000e-14 91.6
17 TraesCS5B01G189200 chr6B 93.478 46 2 1 5364 5409 30282114 30282070 5.080000e-07 67.6
18 TraesCS5B01G189200 chr6B 100.000 32 0 0 7292 7323 14312581 14312550 8.500000e-05 60.2
19 TraesCS5B01G189200 chr6B 100.000 31 0 0 7151 7181 14312580 14312550 3.060000e-04 58.4
20 TraesCS5B01G189200 chr2B 97.651 2001 46 1 3094 5094 91830392 91832391 0.000000e+00 3434.0
21 TraesCS5B01G189200 chr2B 98.315 1958 29 1 3097 5054 195010636 195008683 0.000000e+00 3430.0
22 TraesCS5B01G189200 chr2B 97.222 1692 35 8 1407 3088 653592032 653590343 0.000000e+00 2854.0
23 TraesCS5B01G189200 chr2B 97.317 1677 41 4 1412 3085 232778861 232777186 0.000000e+00 2844.0
24 TraesCS5B01G189200 chr2B 94.970 1690 60 12 1411 3088 764753516 764751840 0.000000e+00 2627.0
25 TraesCS5B01G189200 chr2B 97.619 42 1 0 5368 5409 83567416 83567375 1.090000e-08 73.1
26 TraesCS5B01G189200 chr2B 97.619 42 1 0 5368 5409 257640206 257640165 1.090000e-08 73.1
27 TraesCS5B01G189200 chr1B 97.453 2002 47 2 3094 5095 508563170 508565167 0.000000e+00 3411.0
28 TraesCS5B01G189200 chr1B 96.686 1690 32 7 1412 3088 330060950 330062628 0.000000e+00 2789.0
29 TraesCS5B01G189200 chr1B 89.931 288 28 1 6556 6842 622706922 622706635 3.460000e-98 370.0
30 TraesCS5B01G189200 chr1B 97.917 144 3 0 1153 1296 622708752 622708609 4.700000e-62 250.0
31 TraesCS5B01G189200 chr1B 97.917 48 1 0 5098 5145 622708490 622708443 5.040000e-12 84.2
32 TraesCS5B01G189200 chr1B 90.909 55 5 0 230 284 38906537 38906591 3.030000e-09 75.0
33 TraesCS5B01G189200 chr1B 95.556 45 2 0 5365 5409 1192991 1193035 1.090000e-08 73.1
34 TraesCS5B01G189200 chr1B 89.655 58 4 2 230 287 536755594 536755539 1.090000e-08 73.1
35 TraesCS5B01G189200 chr1B 93.750 48 2 1 5362 5409 61951781 61951735 3.930000e-08 71.3
36 TraesCS5B01G189200 chr1B 95.238 42 2 0 5365 5406 648995160 648995201 5.080000e-07 67.6
37 TraesCS5B01G189200 chr1B 100.000 30 0 0 7293 7322 528380054 528380025 1.000000e-03 56.5
38 TraesCS5B01G189200 chr1B 100.000 30 0 0 7151 7180 528380054 528380025 1.000000e-03 56.5
39 TraesCS5B01G189200 chr1B 100.000 28 0 0 7296 7323 639412552 639412525 1.400000e-02 52.8
40 TraesCS5B01G189200 chr1B 100.000 28 0 0 7154 7181 639412552 639412525 1.400000e-02 52.8
41 TraesCS5B01G189200 chr7B 97.403 2002 51 1 3094 5095 476636944 476638944 0.000000e+00 3408.0
42 TraesCS5B01G189200 chr7B 100.000 42 0 0 5368 5409 743366871 743366830 2.350000e-10 78.7
43 TraesCS5B01G189200 chr7B 100.000 31 0 0 7151 7181 748622764 748622794 3.060000e-04 58.4
44 TraesCS5B01G189200 chr7B 100.000 31 0 0 7293 7323 748622764 748622794 3.060000e-04 58.4
45 TraesCS5B01G189200 chr3A 96.813 2008 63 1 3097 5104 102497302 102495296 0.000000e+00 3352.0
46 TraesCS5B01G189200 chr2A 96.948 1999 60 1 3097 5095 475525412 475523415 0.000000e+00 3352.0
47 TraesCS5B01G189200 chr2A 100.000 31 0 0 7292 7322 679913089 679913059 3.060000e-04 58.4
48 TraesCS5B01G189200 chr2A 94.286 35 2 0 7284 7318 44244745 44244779 4.000000e-03 54.7
49 TraesCS5B01G189200 chr3B 96.616 1655 46 6 1443 3088 30118540 30116887 0.000000e+00 2737.0
50 TraesCS5B01G189200 chr3B 92.063 63 4 1 269 331 52769331 52769392 3.900000e-13 87.9
51 TraesCS5B01G189200 chr1A 94.731 1689 63 13 1412 3088 144566322 144564648 0.000000e+00 2603.0
52 TraesCS5B01G189200 chr1A 90.625 288 26 1 6556 6842 547392118 547391831 1.600000e-101 381.0
53 TraesCS5B01G189200 chr1A 97.917 144 3 0 1153 1296 547395710 547395567 4.700000e-62 250.0
54 TraesCS5B01G189200 chr1A 95.541 157 6 1 1141 1296 547417300 547417144 4.700000e-62 250.0
55 TraesCS5B01G189200 chr1A 95.918 49 2 0 5097 5145 547417044 547416996 6.520000e-11 80.5
56 TraesCS5B01G189200 chr1A 95.556 45 2 0 1001 1045 547417410 547417366 1.090000e-08 73.1
57 TraesCS5B01G189200 chr1A 93.182 44 3 0 1001 1044 547395833 547395790 1.830000e-06 65.8
58 TraesCS5B01G189200 chr1A 100.000 28 0 0 7149 7176 435393170 435393197 1.400000e-02 52.8
59 TraesCS5B01G189200 chr3D 94.550 1688 79 9 1411 3088 496056455 496054771 0.000000e+00 2595.0
60 TraesCS5B01G189200 chr3D 88.000 75 5 4 276 347 504069500 504069573 1.400000e-12 86.1
61 TraesCS5B01G189200 chr3D 95.349 43 2 0 5367 5409 384867488 384867446 1.410000e-07 69.4
62 TraesCS5B01G189200 chr3D 100.000 31 0 0 7292 7322 16516445 16516415 3.060000e-04 58.4
63 TraesCS5B01G189200 chr3D 100.000 30 0 0 7151 7180 16516444 16516415 1.000000e-03 56.5
64 TraesCS5B01G189200 chr5A 89.945 1263 85 24 5438 6658 397250321 397251583 0.000000e+00 1591.0
65 TraesCS5B01G189200 chr5A 90.718 571 44 5 334 895 397248901 397249471 0.000000e+00 752.0
66 TraesCS5B01G189200 chr5A 90.295 577 32 10 7288 7841 397252042 397252617 0.000000e+00 734.0
67 TraesCS5B01G189200 chr5A 84.037 545 46 21 877 1411 397249619 397250132 3.290000e-133 486.0
68 TraesCS5B01G189200 chr5A 90.654 321 23 5 16 335 397248503 397248817 3.380000e-113 420.0
69 TraesCS5B01G189200 chr5A 87.745 204 12 8 5097 5298 397250125 397250317 7.920000e-55 226.0
70 TraesCS5B01G189200 chr5A 81.496 254 22 15 6944 7193 397251860 397252092 1.340000e-42 185.0
71 TraesCS5B01G189200 chr5A 85.714 84 11 1 248 331 597672239 597672321 3.900000e-13 87.9
72 TraesCS5B01G189200 chr5A 96.970 33 0 1 7149 7180 631619246 631619278 4.000000e-03 54.7
73 TraesCS5B01G189200 chr5D 94.072 1029 40 9 396 1411 299832004 299833024 0.000000e+00 1543.0
74 TraesCS5B01G189200 chr5D 90.637 1004 56 21 6020 7012 299834162 299835138 0.000000e+00 1299.0
75 TraesCS5B01G189200 chr5D 91.603 524 32 6 5445 5956 299833181 299833704 0.000000e+00 713.0
76 TraesCS5B01G189200 chr5D 92.023 351 18 8 16 362 299831667 299832011 1.180000e-132 484.0
77 TraesCS5B01G189200 chr5D 89.859 355 18 5 7505 7841 299835560 299835914 2.600000e-119 440.0
78 TraesCS5B01G189200 chr5D 85.329 334 46 1 5451 5784 493121503 493121833 7.530000e-90 342.0
79 TraesCS5B01G189200 chr5D 86.786 280 23 6 6556 6832 493122581 493122849 4.600000e-77 300.0
80 TraesCS5B01G189200 chr5D 81.714 175 9 11 5097 5270 299833017 299833169 2.970000e-24 124.0
81 TraesCS5B01G189200 chr5D 100.000 30 0 0 7293 7322 69096386 69096357 1.000000e-03 56.5
82 TraesCS5B01G189200 chr5D 100.000 30 0 0 7151 7180 69096386 69096357 1.000000e-03 56.5
83 TraesCS5B01G189200 chr4D 82.296 514 74 12 5449 5956 81973252 81972750 5.620000e-116 429.0
84 TraesCS5B01G189200 chr4D 91.319 288 24 1 6556 6842 81972022 81971735 7.380000e-105 392.0
85 TraesCS5B01G189200 chr4D 90.426 282 27 0 6561 6842 81985267 81984986 9.610000e-99 372.0
86 TraesCS5B01G189200 chr4D 97.917 144 3 0 1153 1296 81974160 81974017 4.700000e-62 250.0
87 TraesCS5B01G189200 chr4D 94.643 56 3 0 5098 5153 81973911 81973856 3.900000e-13 87.9
88 TraesCS5B01G189200 chr4D 93.617 47 3 0 1001 1047 81974285 81974239 3.930000e-08 71.3
89 TraesCS5B01G189200 chr4D 95.349 43 2 0 1000 1042 81987449 81987407 1.410000e-07 69.4
90 TraesCS5B01G189200 chr4D 96.875 32 1 0 7150 7181 470119569 470119600 4.000000e-03 54.7
91 TraesCS5B01G189200 chr4A 82.046 518 74 15 5449 5956 491916538 491916030 2.620000e-114 424.0
92 TraesCS5B01G189200 chr4A 91.319 288 24 1 6559 6845 491915395 491915108 7.380000e-105 392.0
93 TraesCS5B01G189200 chr4A 91.071 280 25 0 6561 6840 492030481 492030202 5.740000e-101 379.0
94 TraesCS5B01G189200 chr4A 97.917 144 3 0 1153 1296 491917492 491917349 4.700000e-62 250.0
95 TraesCS5B01G189200 chr4A 94.643 56 3 0 5098 5153 491917231 491917176 3.900000e-13 87.9
96 TraesCS5B01G189200 chr4A 95.455 44 2 0 5367 5410 609923252 609923295 3.930000e-08 71.3
97 TraesCS5B01G189200 chr4A 93.750 48 1 1 5359 5406 726651815 726651860 3.930000e-08 71.3
98 TraesCS5B01G189200 chr4A 95.349 43 2 0 5367 5409 739763277 739763235 1.410000e-07 69.4
99 TraesCS5B01G189200 chr4A 95.122 41 2 0 1001 1041 491917615 491917575 1.830000e-06 65.8
100 TraesCS5B01G189200 chr1D 91.319 288 24 1 6556 6842 452625701 452625414 7.380000e-105 392.0
101 TraesCS5B01G189200 chr1D 95.679 162 6 1 1142 1302 452627442 452627281 7.810000e-65 259.0
102 TraesCS5B01G189200 chr4B 90.278 288 27 1 6556 6842 115845858 115845571 7.430000e-100 375.0
103 TraesCS5B01G189200 chr4B 89.007 282 31 0 6561 6842 115879641 115879360 4.500000e-92 350.0
104 TraesCS5B01G189200 chr4B 96.711 152 3 2 1146 1296 115847889 115847739 1.310000e-62 252.0
105 TraesCS5B01G189200 chr4B 94.643 56 3 0 5098 5153 115847623 115847568 3.900000e-13 87.9
106 TraesCS5B01G189200 chr4B 97.619 42 1 0 5368 5409 105628483 105628442 1.090000e-08 73.1
107 TraesCS5B01G189200 chr4B 95.556 45 2 0 5365 5409 530491073 530491117 1.090000e-08 73.1
108 TraesCS5B01G189200 chr4B 93.478 46 3 0 1001 1046 115848000 115847955 1.410000e-07 69.4
109 TraesCS5B01G189200 chr4B 95.349 43 2 0 5367 5409 655168674 655168632 1.410000e-07 69.4
110 TraesCS5B01G189200 chr4B 95.238 42 2 0 5368 5409 565740398 565740357 5.080000e-07 67.6
111 TraesCS5B01G189200 chr4B 91.111 45 4 0 5365 5409 654437857 654437901 2.360000e-05 62.1
112 TraesCS5B01G189200 chr4B 100.000 30 0 0 7293 7322 410379942 410379913 1.000000e-03 56.5
113 TraesCS5B01G189200 chr4B 100.000 30 0 0 7151 7180 410379942 410379913 1.000000e-03 56.5
114 TraesCS5B01G189200 chr6D 93.651 63 3 1 269 331 62245408 62245347 8.380000e-15 93.5
115 TraesCS5B01G189200 chr6D 100.000 32 0 0 7292 7323 7414518 7414549 8.500000e-05 60.2
116 TraesCS5B01G189200 chr6D 100.000 31 0 0 7151 7181 7414519 7414549 3.060000e-04 58.4
117 TraesCS5B01G189200 chr2D 90.278 72 5 2 247 317 115111431 115111501 8.380000e-15 93.5
118 TraesCS5B01G189200 chr2D 95.238 42 2 0 5368 5409 104275643 104275602 5.080000e-07 67.6
119 TraesCS5B01G189200 chr2D 95.238 42 2 0 5365 5406 305770513 305770554 5.080000e-07 67.6
120 TraesCS5B01G189200 chr6A 88.000 75 5 4 276 347 149957767 149957694 1.400000e-12 86.1
121 TraesCS5B01G189200 chrUn 100.000 29 0 0 7151 7179 96588240 96588268 4.000000e-03 54.7
122 TraesCS5B01G189200 chrUn 100.000 29 0 0 7293 7321 96588240 96588268 4.000000e-03 54.7
123 TraesCS5B01G189200 chr7D 96.875 32 0 1 7292 7322 419036330 419036361 1.400000e-02 52.8
124 TraesCS5B01G189200 chr7D 96.875 32 0 1 7292 7322 616013903 616013872 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G189200 chr5B 341061699 341069539 7840 False 3007.360000 14480 97.792800 1 7841 5 chr5B.!!$F4 7840
1 TraesCS5B01G189200 chr5B 624634827 624636824 1997 True 3347.000000 3347 96.898000 3097 5095 1 chr5B.!!$R2 1998
2 TraesCS5B01G189200 chr5B 212407022 212408703 1681 False 2614.000000 2614 94.749000 1406 3088 1 chr5B.!!$F2 1682
3 TraesCS5B01G189200 chr6B 407167972 407169970 1998 True 3470.000000 3470 98.000000 3097 5095 1 chr6B.!!$R4 1998
4 TraesCS5B01G189200 chr6B 77619626 77621623 1997 True 3452.000000 3452 97.849000 3097 5095 1 chr6B.!!$R3 1998
5 TraesCS5B01G189200 chr6B 608150135 608151823 1688 True 2815.000000 2815 96.862000 1411 3088 1 chr6B.!!$R5 1677
6 TraesCS5B01G189200 chr2B 91830392 91832391 1999 False 3434.000000 3434 97.651000 3094 5094 1 chr2B.!!$F1 2000
7 TraesCS5B01G189200 chr2B 195008683 195010636 1953 True 3430.000000 3430 98.315000 3097 5054 1 chr2B.!!$R2 1957
8 TraesCS5B01G189200 chr2B 653590343 653592032 1689 True 2854.000000 2854 97.222000 1407 3088 1 chr2B.!!$R5 1681
9 TraesCS5B01G189200 chr2B 232777186 232778861 1675 True 2844.000000 2844 97.317000 1412 3085 1 chr2B.!!$R3 1673
10 TraesCS5B01G189200 chr2B 764751840 764753516 1676 True 2627.000000 2627 94.970000 1411 3088 1 chr2B.!!$R6 1677
11 TraesCS5B01G189200 chr1B 508563170 508565167 1997 False 3411.000000 3411 97.453000 3094 5095 1 chr1B.!!$F4 2001
12 TraesCS5B01G189200 chr1B 330060950 330062628 1678 False 2789.000000 2789 96.686000 1412 3088 1 chr1B.!!$F3 1676
13 TraesCS5B01G189200 chr1B 622706635 622708752 2117 True 234.733333 370 95.255000 1153 6842 3 chr1B.!!$R4 5689
14 TraesCS5B01G189200 chr7B 476636944 476638944 2000 False 3408.000000 3408 97.403000 3094 5095 1 chr7B.!!$F1 2001
15 TraesCS5B01G189200 chr3A 102495296 102497302 2006 True 3352.000000 3352 96.813000 3097 5104 1 chr3A.!!$R1 2007
16 TraesCS5B01G189200 chr2A 475523415 475525412 1997 True 3352.000000 3352 96.948000 3097 5095 1 chr2A.!!$R1 1998
17 TraesCS5B01G189200 chr3B 30116887 30118540 1653 True 2737.000000 2737 96.616000 1443 3088 1 chr3B.!!$R1 1645
18 TraesCS5B01G189200 chr1A 144564648 144566322 1674 True 2603.000000 2603 94.731000 1412 3088 1 chr1A.!!$R1 1676
19 TraesCS5B01G189200 chr1A 547391831 547395833 4002 True 232.266667 381 93.908000 1001 6842 3 chr1A.!!$R2 5841
20 TraesCS5B01G189200 chr3D 496054771 496056455 1684 True 2595.000000 2595 94.550000 1411 3088 1 chr3D.!!$R2 1677
21 TraesCS5B01G189200 chr5A 397248503 397252617 4114 False 627.714286 1591 87.841429 16 7841 7 chr5A.!!$F3 7825
22 TraesCS5B01G189200 chr5D 299831667 299835914 4247 False 767.166667 1543 89.984667 16 7841 6 chr5D.!!$F1 7825
23 TraesCS5B01G189200 chr5D 493121503 493122849 1346 False 321.000000 342 86.057500 5451 6832 2 chr5D.!!$F2 1381
24 TraesCS5B01G189200 chr4D 81971735 81974285 2550 True 246.040000 429 91.958400 1001 6842 5 chr4D.!!$R1 5841
25 TraesCS5B01G189200 chr4D 81984986 81987449 2463 True 220.700000 372 92.887500 1000 6842 2 chr4D.!!$R2 5842
26 TraesCS5B01G189200 chr4A 491915108 491917615 2507 True 243.940000 424 92.209400 1001 6845 5 chr4A.!!$R3 5844
27 TraesCS5B01G189200 chr1D 452625414 452627442 2028 True 325.500000 392 93.499000 1142 6842 2 chr1D.!!$R1 5700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
618 708 1.349627 CGCACTTATCGCCTTGCTG 59.650 57.895 0.00 0.0 32.56 4.41 F
1296 1593 0.253327 CTTCTGGGAGGCCAAGGTAC 59.747 60.000 5.01 0.0 0.00 3.34 F
1395 1744 0.393402 TGATGCGCTGCTTGGATCTT 60.393 50.000 9.73 0.0 35.46 2.40 F
2632 3000 1.734465 CACCCTTGAAGCGAGATGAAC 59.266 52.381 0.00 0.0 0.00 3.18 F
2873 3242 2.009774 GATGGTCCCGATGAACAAGTG 58.990 52.381 0.00 0.0 45.75 3.16 F
3261 3631 2.682494 GTGGGGAGCCGTAGTGGA 60.682 66.667 0.00 0.0 42.00 4.02 F
5070 5444 1.996898 TCCGTGAATTGATTTCGTCCG 59.003 47.619 0.00 0.0 37.13 4.79 F
5712 8622 1.224592 GATCCATGTCGGGTGCCTT 59.775 57.895 0.00 0.0 34.36 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1552 1901 1.817941 GTGGACTGGTGTGCAACGT 60.818 57.895 0.00 0.0 45.76 3.99 R
2807 3176 1.005450 CGGGAAAAAGGGATGGAAGGA 59.995 52.381 0.00 0.0 0.00 3.36 R
2873 3242 2.124695 GTGAACCCCTCCGCATCC 60.125 66.667 0.00 0.0 0.00 3.51 R
3961 4331 1.669760 TCGACGCCACCCAACAATC 60.670 57.895 0.00 0.0 0.00 2.67 R
4826 5200 1.080705 GCACGGTGACTTAGACGCT 60.081 57.895 13.29 0.0 0.00 5.07 R
5149 5523 2.334023 AGAGAGAGGCAAAAGGTGAGT 58.666 47.619 0.00 0.0 0.00 3.41 R
6618 10272 0.038166 TGAGGAAGTTCATGGGGTGC 59.962 55.000 5.01 0.0 0.00 5.01 R
6964 10659 0.107945 ATCGAGCAACCCTCTTCTGC 60.108 55.000 0.00 0.0 38.49 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 7.749126 CCCTAACATTCATAAAACGAGAACAAC 59.251 37.037 0.00 0.00 0.00 3.32
134 135 6.038271 GTCGGAAATTAGTTTGTGCCATCTAT 59.962 38.462 0.00 0.00 0.00 1.98
147 148 5.012354 TGTGCCATCTATGATGAGAAGCATA 59.988 40.000 8.91 5.74 39.54 3.14
167 168 5.827797 GCATACTTTCACCTAATGGGATCAA 59.172 40.000 0.00 0.00 38.76 2.57
284 286 2.041891 CGGGGTATCATCTACTCCCTCT 59.958 54.545 0.00 0.00 34.60 3.69
306 309 7.062749 TCTGTCCCATAATATAAGAGCGTTT 57.937 36.000 0.00 0.00 0.00 3.60
436 523 7.041107 TCTGGTTTTATGGCTGCATTTTATTC 58.959 34.615 0.50 0.00 0.00 1.75
481 570 4.429854 AAAGAAGAAGAAGGCAGACAGT 57.570 40.909 0.00 0.00 0.00 3.55
490 579 4.826556 AGAAGGCAGACAGTAGTTTGATC 58.173 43.478 0.00 0.00 31.85 2.92
493 582 5.331876 AGGCAGACAGTAGTTTGATCTAC 57.668 43.478 0.00 0.00 40.14 2.59
508 597 9.314321 AGTTTGATCTACATAAATTCTACACGG 57.686 33.333 0.00 0.00 0.00 4.94
514 603 8.931385 TCTACATAAATTCTACACGGGTAAAC 57.069 34.615 0.00 0.00 0.00 2.01
519 608 2.437200 TCTACACGGGTAAACGTTGG 57.563 50.000 0.00 0.00 46.25 3.77
618 708 1.349627 CGCACTTATCGCCTTGCTG 59.650 57.895 0.00 0.00 32.56 4.41
703 794 2.146342 CCAATCCCACAGATATCGTGC 58.854 52.381 17.06 0.00 33.66 5.34
771 867 5.792962 TGTTGATTGATGCGACGATAAAAAC 59.207 36.000 0.00 0.00 0.00 2.43
830 926 6.299805 TCTACTTCATCAGCATTAACACCT 57.700 37.500 0.00 0.00 0.00 4.00
950 1221 1.497991 CCGTGACTGCGAAGAAGAAA 58.502 50.000 0.00 0.00 0.00 2.52
951 1222 1.864711 CCGTGACTGCGAAGAAGAAAA 59.135 47.619 0.00 0.00 0.00 2.29
952 1223 2.286833 CCGTGACTGCGAAGAAGAAAAA 59.713 45.455 0.00 0.00 0.00 1.94
953 1224 3.535860 CGTGACTGCGAAGAAGAAAAAG 58.464 45.455 0.00 0.00 0.00 2.27
954 1225 3.245284 CGTGACTGCGAAGAAGAAAAAGA 59.755 43.478 0.00 0.00 0.00 2.52
955 1226 4.260212 CGTGACTGCGAAGAAGAAAAAGAA 60.260 41.667 0.00 0.00 0.00 2.52
979 1251 4.338795 AGAAAGAGTGAGGGAGGTATCA 57.661 45.455 0.00 0.00 0.00 2.15
1129 1401 2.224917 TGAAATTAACAAGGGAGGGCGT 60.225 45.455 0.00 0.00 0.00 5.68
1296 1593 0.253327 CTTCTGGGAGGCCAAGGTAC 59.747 60.000 5.01 0.00 0.00 3.34
1329 1652 6.774673 TCCAAAACATCTCATAGTGTACCAA 58.225 36.000 0.00 0.00 0.00 3.67
1352 1675 9.108284 CCAATTTTGTGTTTTCCAGATTACTTT 57.892 29.630 0.00 0.00 0.00 2.66
1381 1726 3.018856 TGAATGGATGAGTTGGTGATGC 58.981 45.455 0.00 0.00 0.00 3.91
1393 1742 1.354506 GTGATGCGCTGCTTGGATC 59.645 57.895 9.73 1.28 35.05 3.36
1395 1744 0.393402 TGATGCGCTGCTTGGATCTT 60.393 50.000 9.73 0.00 35.46 2.40
1403 1752 2.421399 GCTTGGATCTTGGCAGGGC 61.421 63.158 0.00 0.00 0.00 5.19
1435 1784 5.408299 GGCAAATTTGACCATTTTGACCTAC 59.592 40.000 22.31 0.00 33.22 3.18
1908 2262 3.010138 TCTCCGATCCCCTTGTTTTGATT 59.990 43.478 0.00 0.00 0.00 2.57
2005 2361 6.867816 GCATGGAAATGTGAGATGTTTGTTTA 59.132 34.615 0.00 0.00 0.00 2.01
2552 2920 2.861462 TTTGCAACGAAGAAGGTTGG 57.139 45.000 0.00 0.00 43.77 3.77
2632 3000 1.734465 CACCCTTGAAGCGAGATGAAC 59.266 52.381 0.00 0.00 0.00 3.18
2807 3176 4.025040 TCACTTGCAAGAGACAATGGAT 57.975 40.909 32.50 3.08 0.00 3.41
2873 3242 2.009774 GATGGTCCCGATGAACAAGTG 58.990 52.381 0.00 0.00 45.75 3.16
3088 3458 7.133133 AGGTTCTAAGTTTGACACCTTCTTA 57.867 36.000 12.09 0.00 29.99 2.10
3089 3459 7.746703 AGGTTCTAAGTTTGACACCTTCTTAT 58.253 34.615 12.09 0.00 29.99 1.73
3090 3460 7.661847 AGGTTCTAAGTTTGACACCTTCTTATG 59.338 37.037 12.09 0.00 29.99 1.90
3091 3461 7.298854 GTTCTAAGTTTGACACCTTCTTATGC 58.701 38.462 0.00 0.00 0.00 3.14
3092 3462 6.530120 TCTAAGTTTGACACCTTCTTATGCA 58.470 36.000 0.00 0.00 0.00 3.96
3095 3465 6.017400 AGTTTGACACCTTCTTATGCAATG 57.983 37.500 0.00 0.00 0.00 2.82
3261 3631 2.682494 GTGGGGAGCCGTAGTGGA 60.682 66.667 0.00 0.00 42.00 4.02
3433 3803 6.215845 AGAACATGGTTGAATTAACAGCAAC 58.784 36.000 0.00 0.00 41.18 4.17
3461 3831 9.061435 TCGCATTCATAATGTACCAATGAATTA 57.939 29.630 17.88 4.74 44.12 1.40
3752 4122 2.743636 TGCCTTCTACTTCTGGTTCG 57.256 50.000 0.00 0.00 0.00 3.95
3850 4220 4.493618 AGAGGATTCCCATCGATAGGAAA 58.506 43.478 25.80 12.02 45.03 3.13
4003 4373 3.817084 CTGCTGACCAACTGAATGAAAGA 59.183 43.478 0.00 0.00 0.00 2.52
4012 4382 6.183361 ACCAACTGAATGAAAGAGAGAAGTCT 60.183 38.462 0.00 0.00 34.86 3.24
4031 4401 3.028850 TCTTGTCTCCCTAACATACGGG 58.971 50.000 0.00 0.00 42.05 5.28
4176 4548 5.676532 AAACACGAAATTCATAACACCGA 57.323 34.783 0.00 0.00 0.00 4.69
4539 4912 4.996758 GGTTCCCCAAATCAATCAAACAAG 59.003 41.667 0.00 0.00 0.00 3.16
5021 5395 2.809696 GCGCTACACAAAAAGGTTAGGA 59.190 45.455 0.00 0.00 0.00 2.94
5070 5444 1.996898 TCCGTGAATTGATTTCGTCCG 59.003 47.619 0.00 0.00 37.13 4.79
5173 5557 3.006247 CACCTTTTGCCTCTCTCTTAGC 58.994 50.000 0.00 0.00 0.00 3.09
5174 5558 2.026729 ACCTTTTGCCTCTCTCTTAGCC 60.027 50.000 0.00 0.00 0.00 3.93
5175 5559 2.275318 CTTTTGCCTCTCTCTTAGCCG 58.725 52.381 0.00 0.00 0.00 5.52
5242 5702 8.897752 GTTAATCACTTCATGGAATCTAGCTTT 58.102 33.333 0.00 0.00 0.00 3.51
5258 5718 4.104383 AGCTTTGAATCCTCACCTGAAA 57.896 40.909 0.00 0.00 0.00 2.69
5267 5731 6.953520 TGAATCCTCACCTGAAATATGGTTTT 59.046 34.615 0.00 0.00 33.75 2.43
5268 5732 8.112822 TGAATCCTCACCTGAAATATGGTTTTA 58.887 33.333 0.00 0.00 33.75 1.52
5272 5736 7.341769 TCCTCACCTGAAATATGGTTTTATTGG 59.658 37.037 0.00 0.00 33.75 3.16
5274 5738 7.835822 TCACCTGAAATATGGTTTTATTGGTG 58.164 34.615 0.00 0.00 36.14 4.17
5298 5918 8.097038 GTGCAATTATAGTCATCCTGAATCCTA 58.903 37.037 0.00 0.00 0.00 2.94
5310 5930 9.310449 TCATCCTGAATCCTACTAGTATTTACC 57.690 37.037 2.33 0.00 0.00 2.85
5311 5931 8.532819 CATCCTGAATCCTACTAGTATTTACCC 58.467 40.741 2.33 0.00 0.00 3.69
5312 5932 7.015064 TCCTGAATCCTACTAGTATTTACCCC 58.985 42.308 2.33 0.00 0.00 4.95
5313 5933 6.071503 CCTGAATCCTACTAGTATTTACCCCG 60.072 46.154 2.33 0.00 0.00 5.73
5314 5934 6.613699 TGAATCCTACTAGTATTTACCCCGA 58.386 40.000 2.33 0.00 0.00 5.14
5315 5935 7.068702 TGAATCCTACTAGTATTTACCCCGAA 58.931 38.462 2.33 0.00 0.00 4.30
5316 5936 7.564660 TGAATCCTACTAGTATTTACCCCGAAA 59.435 37.037 2.33 0.00 0.00 3.46
5317 5937 7.919385 ATCCTACTAGTATTTACCCCGAAAA 57.081 36.000 2.33 0.00 0.00 2.29
5318 5938 7.919385 TCCTACTAGTATTTACCCCGAAAAT 57.081 36.000 2.33 0.00 0.00 1.82
5319 5939 9.605951 ATCCTACTAGTATTTACCCCGAAAATA 57.394 33.333 2.33 0.00 0.00 1.40
5320 5940 9.432982 TCCTACTAGTATTTACCCCGAAAATAA 57.567 33.333 2.33 0.00 32.21 1.40
5355 5975 9.924010 AGAATCCTACTAGTATTTGTCTGTACT 57.076 33.333 2.33 0.00 35.47 2.73
5382 6002 6.415206 TTTATTAGTACTCCCTCCATTCCG 57.585 41.667 0.00 0.00 0.00 4.30
5383 6003 3.675348 TTAGTACTCCCTCCATTCCGA 57.325 47.619 0.00 0.00 0.00 4.55
5384 6004 2.777459 AGTACTCCCTCCATTCCGAT 57.223 50.000 0.00 0.00 0.00 4.18
5385 6005 3.047695 AGTACTCCCTCCATTCCGATT 57.952 47.619 0.00 0.00 0.00 3.34
5386 6006 3.385115 AGTACTCCCTCCATTCCGATTT 58.615 45.455 0.00 0.00 0.00 2.17
5387 6007 4.553678 AGTACTCCCTCCATTCCGATTTA 58.446 43.478 0.00 0.00 0.00 1.40
5388 6008 3.840124 ACTCCCTCCATTCCGATTTAC 57.160 47.619 0.00 0.00 0.00 2.01
5389 6009 3.385115 ACTCCCTCCATTCCGATTTACT 58.615 45.455 0.00 0.00 0.00 2.24
5390 6010 3.388350 ACTCCCTCCATTCCGATTTACTC 59.612 47.826 0.00 0.00 0.00 2.59
5392 6012 2.102588 CCCTCCATTCCGATTTACTCGT 59.897 50.000 0.00 0.00 46.18 4.18
5393 6013 3.381949 CCTCCATTCCGATTTACTCGTC 58.618 50.000 0.00 0.00 46.18 4.20
5396 6016 2.534349 CCATTCCGATTTACTCGTCGTG 59.466 50.000 0.00 0.00 46.18 4.35
5400 6020 4.100707 TCCGATTTACTCGTCGTGATTT 57.899 40.909 0.56 0.00 46.18 2.17
5410 6064 9.462174 TTTACTCGTCGTGATTTTAGTTTAAGA 57.538 29.630 0.56 0.00 0.00 2.10
5411 6065 7.564044 ACTCGTCGTGATTTTAGTTTAAGAG 57.436 36.000 0.56 0.00 0.00 2.85
5412 6066 6.585322 ACTCGTCGTGATTTTAGTTTAAGAGG 59.415 38.462 0.56 0.00 0.00 3.69
5413 6067 5.346822 TCGTCGTGATTTTAGTTTAAGAGGC 59.653 40.000 0.00 0.00 0.00 4.70
5414 6068 5.119588 CGTCGTGATTTTAGTTTAAGAGGCA 59.880 40.000 0.00 0.00 0.00 4.75
5416 6070 6.147328 GTCGTGATTTTAGTTTAAGAGGCAGT 59.853 38.462 0.00 0.00 0.00 4.40
5417 6071 7.330208 GTCGTGATTTTAGTTTAAGAGGCAGTA 59.670 37.037 0.00 0.00 0.00 2.74
5418 6072 7.330208 TCGTGATTTTAGTTTAAGAGGCAGTAC 59.670 37.037 0.00 0.00 0.00 2.73
5419 6073 7.331193 CGTGATTTTAGTTTAAGAGGCAGTACT 59.669 37.037 0.00 0.00 0.00 2.73
5421 6075 9.569122 TGATTTTAGTTTAAGAGGCAGTACTTT 57.431 29.630 0.00 0.00 0.00 2.66
5423 6077 6.796705 TTAGTTTAAGAGGCAGTACTTTGC 57.203 37.500 0.00 0.00 43.34 3.68
5586 8496 2.091610 CCTCTGTGACCTCCTCAGGATA 60.092 54.545 0.00 0.00 43.65 2.59
5596 8506 3.639094 CCTCCTCAGGATAAATGTCGACT 59.361 47.826 17.92 0.00 43.65 4.18
5712 8622 1.224592 GATCCATGTCGGGTGCCTT 59.775 57.895 0.00 0.00 34.36 4.35
5789 8699 6.939163 GGTATCTCAACCGGTAAGAGTCTATA 59.061 42.308 26.90 18.29 0.00 1.31
5795 8705 7.285566 TCAACCGGTAAGAGTCTATATGTACT 58.714 38.462 8.00 0.00 0.00 2.73
5799 8709 6.128227 CCGGTAAGAGTCTATATGTACTGAGC 60.128 46.154 8.69 0.00 0.00 4.26
5858 8787 5.514204 CGAATTGCTGAGATTTCATGTTTCC 59.486 40.000 0.00 0.00 31.68 3.13
5897 8828 2.556287 CTCAACGTCGCAAAGCCC 59.444 61.111 0.00 0.00 0.00 5.19
5919 8850 3.925630 AAGGGCATGACAGTGGCGG 62.926 63.158 0.00 0.00 44.85 6.13
5965 9039 1.809684 GCTGTAAGTGTTCCTCCACC 58.190 55.000 0.00 0.00 35.93 4.61
5986 9061 5.694006 CACCAGATATTCTTTCAGGTCGATC 59.306 44.000 0.00 0.00 31.29 3.69
5989 9064 6.385843 CAGATATTCTTTCAGGTCGATCGAT 58.614 40.000 22.50 2.68 0.00 3.59
5990 9065 6.307558 CAGATATTCTTTCAGGTCGATCGATG 59.692 42.308 22.50 16.44 0.00 3.84
5992 9067 3.699779 TCTTTCAGGTCGATCGATGAG 57.300 47.619 22.50 13.54 0.00 2.90
5993 9068 3.279434 TCTTTCAGGTCGATCGATGAGA 58.721 45.455 22.50 15.32 0.00 3.27
5994 9069 3.694566 TCTTTCAGGTCGATCGATGAGAA 59.305 43.478 22.50 20.15 0.00 2.87
5995 9070 4.339530 TCTTTCAGGTCGATCGATGAGAAT 59.660 41.667 22.50 1.09 0.00 2.40
6066 9551 1.687494 GCGCATCGAGGATTATCGGC 61.687 60.000 0.30 0.00 42.93 5.54
6091 9576 1.480545 ACTTGAACCCTGCAAAACACC 59.519 47.619 0.00 0.00 0.00 4.16
6176 9688 4.472108 ACAATCCATCCATCTTGGCAAAAT 59.528 37.500 0.00 0.00 37.47 1.82
6177 9689 4.682778 ATCCATCCATCTTGGCAAAATG 57.317 40.909 6.56 6.56 37.47 2.32
6179 9691 4.608269 TCCATCCATCTTGGCAAAATGTA 58.392 39.130 12.25 0.00 37.47 2.29
6184 9699 8.152246 CCATCCATCTTGGCAAAATGTATATTT 58.848 33.333 12.25 0.00 37.47 1.40
6237 9753 1.332144 ACCCCATGCATGTCCATTGC 61.332 55.000 24.58 0.00 0.00 3.56
6289 9805 1.599797 GTGAACCCCAAGGACCACG 60.600 63.158 0.00 0.00 36.73 4.94
6328 9885 3.000078 GGTACTTGTTCATGACATACGCG 60.000 47.826 3.53 3.53 38.26 6.01
6377 9940 1.740585 TGATGGTCCAAAAATACGCCG 59.259 47.619 0.00 0.00 0.00 6.46
6504 10158 4.774660 ATGATGATCACTTGCTCCTTCT 57.225 40.909 0.00 0.00 0.00 2.85
6508 10162 3.935315 TGATCACTTGCTCCTTCTTCTG 58.065 45.455 0.00 0.00 0.00 3.02
6530 10184 3.365767 GCTGCTTGAAACTGAATCCTGAC 60.366 47.826 0.00 0.00 0.00 3.51
6536 10190 6.566753 GCTTGAAACTGAATCCTGACACTAAC 60.567 42.308 0.00 0.00 0.00 2.34
6537 10191 5.924356 TGAAACTGAATCCTGACACTAACA 58.076 37.500 0.00 0.00 0.00 2.41
6553 10207 2.717639 AACACTATGGCCTGATGGAC 57.282 50.000 3.32 0.00 43.36 4.02
6618 10272 2.027625 GGAGGCGGTGTTCAAGACG 61.028 63.158 0.00 0.00 0.00 4.18
6850 10504 1.495574 TGGAGGAGTAGAGGTAGAGCC 59.504 57.143 0.00 0.00 37.58 4.70
6882 10536 0.394192 TCATCCCTCGCTGCTATTGG 59.606 55.000 0.00 0.00 0.00 3.16
6903 10557 5.478407 TGGACTACAACACACATGTATCAG 58.522 41.667 0.00 0.00 38.45 2.90
6905 10559 5.152623 ACTACAACACACATGTATCAGCT 57.847 39.130 0.00 0.00 38.45 4.24
6917 10612 6.093219 CACATGTATCAGCTTCTTTGCTACTT 59.907 38.462 0.00 0.00 41.98 2.24
6993 10688 2.096819 GGGTTGCTCGATTAATTTGCGA 59.903 45.455 0.00 0.00 0.00 5.10
7002 10697 3.237433 CGATTAATTTGCGAAAACTCGGC 59.763 43.478 0.00 0.00 0.00 5.54
7003 10698 2.235238 TAATTTGCGAAAACTCGGCG 57.765 45.000 0.00 0.00 0.00 6.46
7011 10706 1.069500 CGAAAACTCGGCGAAAACCAT 60.069 47.619 12.13 0.00 0.00 3.55
7012 10707 2.581637 GAAAACTCGGCGAAAACCATC 58.418 47.619 12.13 1.18 0.00 3.51
7013 10708 1.600023 AAACTCGGCGAAAACCATCA 58.400 45.000 12.13 0.00 0.00 3.07
7014 10709 0.872388 AACTCGGCGAAAACCATCAC 59.128 50.000 12.13 0.00 0.00 3.06
7015 10710 0.250124 ACTCGGCGAAAACCATCACA 60.250 50.000 12.13 0.00 0.00 3.58
7016 10711 0.871722 CTCGGCGAAAACCATCACAA 59.128 50.000 12.13 0.00 0.00 3.33
7017 10712 0.589223 TCGGCGAAAACCATCACAAC 59.411 50.000 7.35 0.00 0.00 3.32
7018 10713 0.309302 CGGCGAAAACCATCACAACA 59.691 50.000 0.00 0.00 0.00 3.33
7019 10714 1.068610 CGGCGAAAACCATCACAACAT 60.069 47.619 0.00 0.00 0.00 2.71
7020 10715 2.327568 GGCGAAAACCATCACAACATG 58.672 47.619 0.00 0.00 0.00 3.21
7021 10716 1.720852 GCGAAAACCATCACAACATGC 59.279 47.619 0.00 0.00 0.00 4.06
7059 10754 2.104111 CTGTTCAACCTCACTACCCACA 59.896 50.000 0.00 0.00 0.00 4.17
7060 10755 2.506231 TGTTCAACCTCACTACCCACAA 59.494 45.455 0.00 0.00 0.00 3.33
7061 10756 3.139077 GTTCAACCTCACTACCCACAAG 58.861 50.000 0.00 0.00 0.00 3.16
7062 10757 2.684943 TCAACCTCACTACCCACAAGA 58.315 47.619 0.00 0.00 0.00 3.02
7063 10758 2.367567 TCAACCTCACTACCCACAAGAC 59.632 50.000 0.00 0.00 0.00 3.01
7064 10759 1.349067 ACCTCACTACCCACAAGACC 58.651 55.000 0.00 0.00 0.00 3.85
7065 10760 0.613777 CCTCACTACCCACAAGACCC 59.386 60.000 0.00 0.00 0.00 4.46
7066 10761 0.246635 CTCACTACCCACAAGACCCG 59.753 60.000 0.00 0.00 0.00 5.28
7080 10775 3.680786 CCCGCACTGTCGAGGACA 61.681 66.667 0.00 0.00 40.50 4.02
7081 10776 2.430921 CCGCACTGTCGAGGACAC 60.431 66.667 0.00 0.00 37.67 3.67
7082 10777 2.801162 CGCACTGTCGAGGACACG 60.801 66.667 0.00 0.00 37.67 4.49
7083 10778 2.335369 GCACTGTCGAGGACACGT 59.665 61.111 0.00 0.00 37.67 4.49
7084 10779 1.577922 GCACTGTCGAGGACACGTA 59.422 57.895 0.00 0.00 37.67 3.57
7086 10781 0.452287 CACTGTCGAGGACACGTACG 60.452 60.000 15.01 15.01 37.67 3.67
7087 10782 1.511464 CTGTCGAGGACACGTACGC 60.511 63.158 16.72 0.00 37.67 4.42
7088 10783 2.202401 GTCGAGGACACGTACGCC 60.202 66.667 16.72 8.85 32.09 5.68
7092 10787 1.069378 CGAGGACACGTACGCCTTTC 61.069 60.000 16.72 6.33 30.70 2.62
7093 10788 0.243095 GAGGACACGTACGCCTTTCT 59.757 55.000 16.72 3.27 30.70 2.52
7094 10789 0.243095 AGGACACGTACGCCTTTCTC 59.757 55.000 16.72 0.74 0.00 2.87
7096 10791 1.336609 GGACACGTACGCCTTTCTCTT 60.337 52.381 16.72 0.00 0.00 2.85
7097 10792 2.095059 GGACACGTACGCCTTTCTCTTA 60.095 50.000 16.72 0.00 0.00 2.10
7098 10793 2.913590 GACACGTACGCCTTTCTCTTAC 59.086 50.000 16.72 0.00 0.00 2.34
7099 10794 2.257034 CACGTACGCCTTTCTCTTACC 58.743 52.381 16.72 0.00 0.00 2.85
7100 10795 1.135575 ACGTACGCCTTTCTCTTACCG 60.136 52.381 16.72 0.00 0.00 4.02
7102 10797 0.174162 TACGCCTTTCTCTTACCGCC 59.826 55.000 0.00 0.00 0.00 6.13
7103 10798 1.079405 CGCCTTTCTCTTACCGCCA 60.079 57.895 0.00 0.00 0.00 5.69
7104 10799 1.084370 CGCCTTTCTCTTACCGCCAG 61.084 60.000 0.00 0.00 0.00 4.85
7105 10800 0.249398 GCCTTTCTCTTACCGCCAGA 59.751 55.000 0.00 0.00 0.00 3.86
7106 10801 1.338769 GCCTTTCTCTTACCGCCAGAA 60.339 52.381 0.00 0.00 0.00 3.02
7107 10802 2.874457 GCCTTTCTCTTACCGCCAGAAA 60.874 50.000 0.00 0.00 35.38 2.52
7108 10803 3.003480 CCTTTCTCTTACCGCCAGAAAG 58.997 50.000 11.94 11.94 46.91 2.62
7123 10818 3.485877 CCAGAAAGAAACCGCATCGAATC 60.486 47.826 0.00 0.00 0.00 2.52
7136 10831 1.661821 CGAATCGCCATCCTCCGAC 60.662 63.158 0.00 0.00 36.18 4.79
7144 10839 1.610624 GCCATCCTCCGACAACAAGAA 60.611 52.381 0.00 0.00 0.00 2.52
7145 10840 2.076863 CCATCCTCCGACAACAAGAAC 58.923 52.381 0.00 0.00 0.00 3.01
7146 10841 2.289694 CCATCCTCCGACAACAAGAACT 60.290 50.000 0.00 0.00 0.00 3.01
7147 10842 2.526304 TCCTCCGACAACAAGAACTG 57.474 50.000 0.00 0.00 0.00 3.16
7150 10845 2.213499 CTCCGACAACAAGAACTGCTT 58.787 47.619 0.00 0.00 37.29 3.91
7151 10846 3.390135 CTCCGACAACAAGAACTGCTTA 58.610 45.455 0.00 0.00 34.31 3.09
7152 10847 3.128349 TCCGACAACAAGAACTGCTTAC 58.872 45.455 0.00 0.00 34.31 2.34
7153 10848 3.131396 CCGACAACAAGAACTGCTTACT 58.869 45.455 0.00 0.00 34.31 2.24
7154 10849 3.560068 CCGACAACAAGAACTGCTTACTT 59.440 43.478 0.00 0.00 34.31 2.24
7155 10850 4.318831 CCGACAACAAGAACTGCTTACTTC 60.319 45.833 0.00 0.00 34.31 3.01
7159 10854 4.009370 ACAAGAACTGCTTACTTCCTCC 57.991 45.455 0.00 0.00 34.31 4.30
7160 10855 2.996621 CAAGAACTGCTTACTTCCTCCG 59.003 50.000 0.00 0.00 34.31 4.63
7161 10856 2.249139 AGAACTGCTTACTTCCTCCGT 58.751 47.619 0.00 0.00 0.00 4.69
7163 10858 0.896226 ACTGCTTACTTCCTCCGTCC 59.104 55.000 0.00 0.00 0.00 4.79
7164 10859 0.175989 CTGCTTACTTCCTCCGTCCC 59.824 60.000 0.00 0.00 0.00 4.46
7165 10860 0.543410 TGCTTACTTCCTCCGTCCCA 60.543 55.000 0.00 0.00 0.00 4.37
7166 10861 0.831307 GCTTACTTCCTCCGTCCCAT 59.169 55.000 0.00 0.00 0.00 4.00
7167 10862 2.037144 GCTTACTTCCTCCGTCCCATA 58.963 52.381 0.00 0.00 0.00 2.74
7168 10863 2.433239 GCTTACTTCCTCCGTCCCATAA 59.567 50.000 0.00 0.00 0.00 1.90
7169 10864 3.071167 GCTTACTTCCTCCGTCCCATAAT 59.929 47.826 0.00 0.00 0.00 1.28
7170 10865 4.282703 GCTTACTTCCTCCGTCCCATAATA 59.717 45.833 0.00 0.00 0.00 0.98
7171 10866 5.046520 GCTTACTTCCTCCGTCCCATAATAT 60.047 44.000 0.00 0.00 0.00 1.28
7172 10867 6.154021 GCTTACTTCCTCCGTCCCATAATATA 59.846 42.308 0.00 0.00 0.00 0.86
7173 10868 7.310237 GCTTACTTCCTCCGTCCCATAATATAA 60.310 40.741 0.00 0.00 0.00 0.98
7174 10869 6.607004 ACTTCCTCCGTCCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
7175 10870 6.320518 ACTTCCTCCGTCCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
7176 10871 6.960542 ACTTCCTCCGTCCCATAATATAAGAT 59.039 38.462 0.00 0.00 0.00 2.40
7177 10872 6.791867 TCCTCCGTCCCATAATATAAGATG 57.208 41.667 0.00 0.00 0.00 2.90
7178 10873 6.261435 TCCTCCGTCCCATAATATAAGATGT 58.739 40.000 0.00 0.00 0.00 3.06
7179 10874 6.729100 TCCTCCGTCCCATAATATAAGATGTT 59.271 38.462 0.00 0.00 0.00 2.71
7180 10875 7.897030 TCCTCCGTCCCATAATATAAGATGTTA 59.103 37.037 0.00 0.00 0.00 2.41
7181 10876 8.537016 CCTCCGTCCCATAATATAAGATGTTAA 58.463 37.037 0.00 0.00 0.00 2.01
7182 10877 9.587772 CTCCGTCCCATAATATAAGATGTTAAG 57.412 37.037 0.00 0.00 0.00 1.85
7183 10878 9.316594 TCCGTCCCATAATATAAGATGTTAAGA 57.683 33.333 0.00 0.00 0.00 2.10
7184 10879 9.938280 CCGTCCCATAATATAAGATGTTAAGAA 57.062 33.333 0.00 0.00 0.00 2.52
7197 10892 8.538409 AAGATGTTAAGAACAAATTTGCATCC 57.462 30.769 18.12 5.04 45.86 3.51
7198 10893 7.899973 AGATGTTAAGAACAAATTTGCATCCT 58.100 30.769 18.12 9.07 45.86 3.24
7199 10894 9.023962 AGATGTTAAGAACAAATTTGCATCCTA 57.976 29.630 18.12 8.16 45.86 2.94
7200 10895 8.986477 ATGTTAAGAACAAATTTGCATCCTAC 57.014 30.769 18.12 13.40 45.86 3.18
7201 10896 7.946207 TGTTAAGAACAAATTTGCATCCTACA 58.054 30.769 18.12 15.29 38.72 2.74
7202 10897 8.417106 TGTTAAGAACAAATTTGCATCCTACAA 58.583 29.630 18.12 6.05 38.72 2.41
7203 10898 8.699749 GTTAAGAACAAATTTGCATCCTACAAC 58.300 33.333 18.12 12.57 0.00 3.32
7204 10899 6.403866 AGAACAAATTTGCATCCTACAACA 57.596 33.333 18.12 0.00 0.00 3.33
7205 10900 6.815089 AGAACAAATTTGCATCCTACAACAA 58.185 32.000 18.12 0.00 0.00 2.83
7206 10901 7.271511 AGAACAAATTTGCATCCTACAACAAA 58.728 30.769 18.12 0.00 36.53 2.83
7207 10902 7.439056 AGAACAAATTTGCATCCTACAACAAAG 59.561 33.333 18.12 0.00 35.65 2.77
7208 10903 6.815089 ACAAATTTGCATCCTACAACAAAGA 58.185 32.000 18.12 0.00 35.65 2.52
7209 10904 6.701400 ACAAATTTGCATCCTACAACAAAGAC 59.299 34.615 18.12 0.00 35.65 3.01
7210 10905 6.655078 AATTTGCATCCTACAACAAAGACT 57.345 33.333 0.00 0.00 35.65 3.24
7211 10906 5.437289 TTTGCATCCTACAACAAAGACTG 57.563 39.130 0.00 0.00 0.00 3.51
7212 10907 2.813754 TGCATCCTACAACAAAGACTGC 59.186 45.455 0.00 0.00 0.00 4.40
7213 10908 3.077359 GCATCCTACAACAAAGACTGCT 58.923 45.455 0.00 0.00 0.00 4.24
7214 10909 3.503748 GCATCCTACAACAAAGACTGCTT 59.496 43.478 0.00 0.00 35.37 3.91
7215 10910 4.614535 GCATCCTACAACAAAGACTGCTTG 60.615 45.833 0.00 0.00 33.79 4.01
7216 10911 4.150897 TCCTACAACAAAGACTGCTTGT 57.849 40.909 0.00 0.00 35.15 3.16
7217 10912 4.523083 TCCTACAACAAAGACTGCTTGTT 58.477 39.130 0.31 0.31 33.84 2.83
7218 10913 4.335315 TCCTACAACAAAGACTGCTTGTTG 59.665 41.667 22.60 22.60 42.36 3.33
7219 10914 2.879826 ACAACAAAGACTGCTTGTTGC 58.120 42.857 23.54 0.00 41.50 4.17
7220 10915 2.195922 CAACAAAGACTGCTTGTTGCC 58.804 47.619 16.08 0.00 42.00 4.52
7221 10916 1.767759 ACAAAGACTGCTTGTTGCCT 58.232 45.000 0.00 0.00 42.00 4.75
7222 10917 2.930950 ACAAAGACTGCTTGTTGCCTA 58.069 42.857 0.00 0.00 42.00 3.93
7223 10918 2.618709 ACAAAGACTGCTTGTTGCCTAC 59.381 45.455 0.00 0.00 42.00 3.18
7224 10919 2.880890 CAAAGACTGCTTGTTGCCTACT 59.119 45.455 0.00 0.00 42.00 2.57
7225 10920 2.938956 AGACTGCTTGTTGCCTACTT 57.061 45.000 0.00 0.00 42.00 2.24
7226 10921 2.772287 AGACTGCTTGTTGCCTACTTC 58.228 47.619 0.00 0.00 42.00 3.01
7227 10922 1.807142 GACTGCTTGTTGCCTACTTCC 59.193 52.381 0.00 0.00 42.00 3.46
7228 10923 1.421646 ACTGCTTGTTGCCTACTTCCT 59.578 47.619 0.00 0.00 42.00 3.36
7229 10924 2.079925 CTGCTTGTTGCCTACTTCCTC 58.920 52.381 0.00 0.00 42.00 3.71
7230 10925 1.271379 TGCTTGTTGCCTACTTCCTCC 60.271 52.381 0.00 0.00 42.00 4.30
7231 10926 1.726853 CTTGTTGCCTACTTCCTCCG 58.273 55.000 0.00 0.00 0.00 4.63
7232 10927 1.002087 CTTGTTGCCTACTTCCTCCGT 59.998 52.381 0.00 0.00 0.00 4.69
7233 10928 0.606604 TGTTGCCTACTTCCTCCGTC 59.393 55.000 0.00 0.00 0.00 4.79
7234 10929 0.108281 GTTGCCTACTTCCTCCGTCC 60.108 60.000 0.00 0.00 0.00 4.79
7235 10930 1.262640 TTGCCTACTTCCTCCGTCCC 61.263 60.000 0.00 0.00 0.00 4.46
7236 10931 1.684734 GCCTACTTCCTCCGTCCCA 60.685 63.158 0.00 0.00 0.00 4.37
7237 10932 1.049289 GCCTACTTCCTCCGTCCCAT 61.049 60.000 0.00 0.00 0.00 4.00
7238 10933 1.756690 GCCTACTTCCTCCGTCCCATA 60.757 57.143 0.00 0.00 0.00 2.74
7239 10934 2.674420 CCTACTTCCTCCGTCCCATAA 58.326 52.381 0.00 0.00 0.00 1.90
7240 10935 3.240302 CCTACTTCCTCCGTCCCATAAT 58.760 50.000 0.00 0.00 0.00 1.28
7241 10936 4.413760 CCTACTTCCTCCGTCCCATAATA 58.586 47.826 0.00 0.00 0.00 0.98
7242 10937 5.024118 CCTACTTCCTCCGTCCCATAATAT 58.976 45.833 0.00 0.00 0.00 1.28
7243 10938 6.192773 CCTACTTCCTCCGTCCCATAATATA 58.807 44.000 0.00 0.00 0.00 0.86
7244 10939 6.666546 CCTACTTCCTCCGTCCCATAATATAA 59.333 42.308 0.00 0.00 0.00 0.98
7245 10940 7.179694 CCTACTTCCTCCGTCCCATAATATAAA 59.820 40.741 0.00 0.00 0.00 1.40
7246 10941 7.383156 ACTTCCTCCGTCCCATAATATAAAA 57.617 36.000 0.00 0.00 0.00 1.52
7247 10942 7.985589 ACTTCCTCCGTCCCATAATATAAAAT 58.014 34.615 0.00 0.00 0.00 1.82
7248 10943 7.883311 ACTTCCTCCGTCCCATAATATAAAATG 59.117 37.037 0.00 0.00 0.00 2.32
7249 10944 7.324388 TCCTCCGTCCCATAATATAAAATGT 57.676 36.000 0.00 0.00 0.00 2.71
7250 10945 7.751646 TCCTCCGTCCCATAATATAAAATGTT 58.248 34.615 0.00 0.00 0.00 2.71
7251 10946 8.882282 TCCTCCGTCCCATAATATAAAATGTTA 58.118 33.333 0.00 0.00 0.00 2.41
7252 10947 9.509956 CCTCCGTCCCATAATATAAAATGTTAA 57.490 33.333 0.00 0.00 0.00 2.01
7269 10964 8.907222 AAATGTTAAGAACAAATTTGCATCCT 57.093 26.923 18.12 9.07 45.86 3.24
7270 10965 9.995003 AAATGTTAAGAACAAATTTGCATCCTA 57.005 25.926 18.12 8.16 45.86 2.94
7271 10966 8.986477 ATGTTAAGAACAAATTTGCATCCTAC 57.014 30.769 18.12 13.40 45.86 3.18
7272 10967 7.946207 TGTTAAGAACAAATTTGCATCCTACA 58.054 30.769 18.12 15.29 38.72 2.74
7273 10968 8.417106 TGTTAAGAACAAATTTGCATCCTACAA 58.583 29.630 18.12 6.05 38.72 2.41
7274 10969 8.699749 GTTAAGAACAAATTTGCATCCTACAAC 58.300 33.333 18.12 12.57 0.00 3.32
7275 10970 6.403866 AGAACAAATTTGCATCCTACAACA 57.596 33.333 18.12 0.00 0.00 3.33
7276 10971 6.815089 AGAACAAATTTGCATCCTACAACAA 58.185 32.000 18.12 0.00 0.00 2.83
7277 10972 6.925165 AGAACAAATTTGCATCCTACAACAAG 59.075 34.615 18.12 0.00 0.00 3.16
7278 10973 5.540911 ACAAATTTGCATCCTACAACAAGG 58.459 37.500 18.12 0.00 38.06 3.61
7286 10981 3.126001 TCCTACAACAAGGACTGCTTG 57.874 47.619 8.65 8.65 40.86 4.01
7287 10982 2.438021 TCCTACAACAAGGACTGCTTGT 59.562 45.455 9.98 9.98 45.70 3.16
7291 10986 2.419057 ACAAGGACTGCTTGTTGCC 58.581 52.632 9.98 0.00 41.66 4.52
7292 10987 0.106519 ACAAGGACTGCTTGTTGCCT 60.107 50.000 9.98 0.00 41.66 4.75
7293 10988 1.142870 ACAAGGACTGCTTGTTGCCTA 59.857 47.619 9.98 0.00 41.66 3.93
7294 10989 1.537202 CAAGGACTGCTTGTTGCCTAC 59.463 52.381 2.19 0.00 42.00 3.18
7295 10990 1.059913 AGGACTGCTTGTTGCCTACT 58.940 50.000 0.00 0.00 42.00 2.57
7296 10991 1.421646 AGGACTGCTTGTTGCCTACTT 59.578 47.619 0.00 0.00 42.00 2.24
7297 10992 1.807142 GGACTGCTTGTTGCCTACTTC 59.193 52.381 0.00 0.00 42.00 3.01
7298 10993 1.807142 GACTGCTTGTTGCCTACTTCC 59.193 52.381 0.00 0.00 42.00 3.46
7299 10994 1.421646 ACTGCTTGTTGCCTACTTCCT 59.578 47.619 0.00 0.00 42.00 3.36
7300 10995 2.079925 CTGCTTGTTGCCTACTTCCTC 58.920 52.381 0.00 0.00 42.00 3.71
7301 10996 1.271379 TGCTTGTTGCCTACTTCCTCC 60.271 52.381 0.00 0.00 42.00 4.30
7302 10997 1.726853 CTTGTTGCCTACTTCCTCCG 58.273 55.000 0.00 0.00 0.00 4.63
7385 11080 1.998315 CATGCAGGAGAAGTGAGAACG 59.002 52.381 0.00 0.00 0.00 3.95
7396 11091 7.332182 AGGAGAAGTGAGAACGAATTTTGATAC 59.668 37.037 0.00 0.00 0.00 2.24
7465 11165 3.365969 CGTTTGCCTACATCTGGGTTTTC 60.366 47.826 0.00 0.00 0.00 2.29
7466 11166 2.507407 TGCCTACATCTGGGTTTTCC 57.493 50.000 0.00 0.00 39.75 3.13
7471 11171 4.222810 GCCTACATCTGGGTTTTCCATTTT 59.777 41.667 0.00 0.00 46.01 1.82
7564 11586 8.710551 CAGCAGATGATCAGATTTAATCTACAC 58.289 37.037 7.18 2.97 37.58 2.90
7569 11591 6.591935 TGATCAGATTTAATCTACACCCCAC 58.408 40.000 7.18 0.00 37.58 4.61
7579 11601 0.768622 TACACCCCACCCTTTGACTG 59.231 55.000 0.00 0.00 0.00 3.51
7678 11700 7.083875 TGCTCAGTATTTACAAACTATTGCC 57.916 36.000 0.00 0.00 40.34 4.52
7689 11711 4.760204 ACAAACTATTGCCTGGTTGAGTAC 59.240 41.667 0.00 0.00 40.34 2.73
7691 11713 4.207891 ACTATTGCCTGGTTGAGTACAG 57.792 45.455 0.00 0.00 34.54 2.74
7736 11776 8.345724 ACAAGTTAATCTCATGAGCTGAAATT 57.654 30.769 18.36 10.45 32.14 1.82
7741 11781 6.438259 AATCTCATGAGCTGAAATTGACAG 57.562 37.500 18.36 8.09 38.27 3.51
7796 11836 5.992217 AGACTTTGTGGTTCACTCTATCAAC 59.008 40.000 0.00 0.00 35.11 3.18
7797 11837 4.750098 ACTTTGTGGTTCACTCTATCAACG 59.250 41.667 0.00 0.00 35.11 4.10
7818 11858 2.356069 GGTCTCCGAATTTTGATCAGGC 59.644 50.000 0.00 0.00 0.00 4.85
7825 11865 4.622740 CCGAATTTTGATCAGGCAAAGAAC 59.377 41.667 0.00 0.00 38.80 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 9.832445 ACCGAAGAATTGATAGTATGTTTATGT 57.168 29.630 0.00 0.00 0.00 2.29
31 32 7.047460 ACCGTGTATATCTTTACCGAAGAAT 57.953 36.000 0.00 0.00 46.90 2.40
103 104 3.432252 ACAAACTAATTTCCGACGCTCTG 59.568 43.478 0.00 0.00 0.00 3.35
134 135 5.426689 AGGTGAAAGTATGCTTCTCATCA 57.573 39.130 15.65 6.64 36.63 3.07
147 148 4.019681 TCGTTGATCCCATTAGGTGAAAGT 60.020 41.667 0.00 0.00 36.75 2.66
167 168 7.327975 TGTTACAATTGACATAGATTCCTCGT 58.672 34.615 13.59 0.00 0.00 4.18
253 255 0.671163 TGATACCCCGCGTGTTGTTC 60.671 55.000 4.92 1.49 0.00 3.18
319 322 9.131791 CCCTAATTAACTATGTTTTGGCACTAT 57.868 33.333 0.00 0.00 0.00 2.12
325 328 9.855021 CAACTTCCCTAATTAACTATGTTTTGG 57.145 33.333 0.00 0.00 0.00 3.28
331 334 8.562892 CATGCTCAACTTCCCTAATTAACTATG 58.437 37.037 0.00 0.00 0.00 2.23
332 335 7.721399 CCATGCTCAACTTCCCTAATTAACTAT 59.279 37.037 0.00 0.00 0.00 2.12
377 464 6.405538 GTCCATGGCCAAAATAATTTCTTCA 58.594 36.000 10.96 0.00 0.00 3.02
436 523 5.544136 TTTGATATCACACATTCACACGG 57.456 39.130 4.48 0.00 0.00 4.94
463 550 4.529109 ACTACTGTCTGCCTTCTTCTTC 57.471 45.455 0.00 0.00 0.00 2.87
465 552 4.345257 TCAAACTACTGTCTGCCTTCTTCT 59.655 41.667 0.00 0.00 0.00 2.85
468 555 4.530161 AGATCAAACTACTGTCTGCCTTCT 59.470 41.667 0.00 0.00 0.00 2.85
490 579 7.489113 ACGTTTACCCGTGTAGAATTTATGTAG 59.511 37.037 0.00 0.00 40.08 2.74
493 582 6.651755 ACGTTTACCCGTGTAGAATTTATG 57.348 37.500 0.00 0.00 40.08 1.90
505 594 2.145536 GTGATTCCAACGTTTACCCGT 58.854 47.619 0.00 0.00 44.23 5.28
506 595 2.144730 TGTGATTCCAACGTTTACCCG 58.855 47.619 0.00 0.00 0.00 5.28
507 596 3.315749 TGTTGTGATTCCAACGTTTACCC 59.684 43.478 0.00 0.00 46.08 3.69
508 597 4.284485 GTGTTGTGATTCCAACGTTTACC 58.716 43.478 0.00 0.00 46.08 2.85
514 603 2.131972 TCTCGTGTTGTGATTCCAACG 58.868 47.619 11.10 0.00 46.08 4.10
519 608 3.059884 TCTTGCTCTCGTGTTGTGATTC 58.940 45.455 0.00 0.00 0.00 2.52
703 794 7.885297 TGACTATTCTCAGATTTGGTTTTTGG 58.115 34.615 0.00 0.00 0.00 3.28
830 926 3.871006 GGTTGATTGATGACATAGCACGA 59.129 43.478 0.00 0.00 0.00 4.35
950 1221 5.221823 CCTCCCTCACTCTTTCTTCTTCTTT 60.222 44.000 0.00 0.00 0.00 2.52
951 1222 4.285775 CCTCCCTCACTCTTTCTTCTTCTT 59.714 45.833 0.00 0.00 0.00 2.52
952 1223 3.837731 CCTCCCTCACTCTTTCTTCTTCT 59.162 47.826 0.00 0.00 0.00 2.85
953 1224 3.580895 ACCTCCCTCACTCTTTCTTCTTC 59.419 47.826 0.00 0.00 0.00 2.87
954 1225 3.592865 ACCTCCCTCACTCTTTCTTCTT 58.407 45.455 0.00 0.00 0.00 2.52
955 1226 3.268034 ACCTCCCTCACTCTTTCTTCT 57.732 47.619 0.00 0.00 0.00 2.85
979 1251 3.845781 TTCACTCCAAGAGCTTCAGTT 57.154 42.857 0.00 0.00 32.04 3.16
1129 1401 5.126384 GCCAGCACCAACCAAATTAACTATA 59.874 40.000 0.00 0.00 0.00 1.31
1352 1675 5.370584 ACCAACTCATCCATTCATCCAGATA 59.629 40.000 0.00 0.00 0.00 1.98
1381 1726 1.989966 CTGCCAAGATCCAAGCAGCG 61.990 60.000 13.56 0.00 45.44 5.18
1403 1752 2.223923 TGGTCAAATTTGCCGAGTTTGG 60.224 45.455 13.54 0.00 34.48 3.28
1404 1753 3.090952 TGGTCAAATTTGCCGAGTTTG 57.909 42.857 13.54 0.00 34.90 2.93
1409 1758 4.054671 GTCAAAATGGTCAAATTTGCCGA 58.945 39.130 13.54 0.00 34.77 5.54
1435 1784 1.996898 TCCGTGAATTGATTTCGTCCG 59.003 47.619 0.00 0.00 37.13 4.79
1552 1901 1.817941 GTGGACTGGTGTGCAACGT 60.818 57.895 0.00 0.00 45.76 3.99
1594 1943 2.516930 AAGGCGTTGCACTGCTGT 60.517 55.556 9.04 0.00 0.00 4.40
1652 2001 2.290071 ACTTTACAAGTGTGGCGCCTAT 60.290 45.455 29.70 7.79 41.01 2.57
1908 2262 4.724399 TGAGCAATGGGAACTTTACTTGA 58.276 39.130 0.00 0.00 0.00 3.02
2169 2537 7.418337 TGCTTCCATGAGTACTAATACAAGA 57.582 36.000 12.03 0.15 33.30 3.02
2632 3000 3.699038 TGGGTCAAAAGAGGTTCAACAAG 59.301 43.478 0.00 0.00 0.00 3.16
2807 3176 1.005450 CGGGAAAAAGGGATGGAAGGA 59.995 52.381 0.00 0.00 0.00 3.36
2873 3242 2.124695 GTGAACCCCTCCGCATCC 60.125 66.667 0.00 0.00 0.00 3.51
3261 3631 2.159085 GGATTGGGACGAGAAAGACGAT 60.159 50.000 0.00 0.00 34.70 3.73
3433 3803 6.901265 TCATTGGTACATTATGAATGCGATG 58.099 36.000 0.00 0.76 42.69 3.84
3461 3831 7.339466 AGACAGGTATGAAGTTGTTTCTGTTTT 59.661 33.333 0.00 0.00 36.71 2.43
3850 4220 5.127845 CAGGATATAGCTATGATCACCGGTT 59.872 44.000 16.77 0.00 0.00 4.44
3961 4331 1.669760 TCGACGCCACCCAACAATC 60.670 57.895 0.00 0.00 0.00 2.67
4003 4373 4.742012 TGTTAGGGAGACAAGACTTCTCT 58.258 43.478 4.55 0.00 39.67 3.10
4031 4401 1.784525 GCTATGATGAGCGGTACACC 58.215 55.000 0.00 0.00 31.57 4.16
4155 4527 4.512198 TGTCGGTGTTATGAATTTCGTGTT 59.488 37.500 1.25 0.00 0.00 3.32
4176 4548 5.711976 AGCAGCAGGTAATAATGAAAGTTGT 59.288 36.000 0.00 0.00 0.00 3.32
4826 5200 1.080705 GCACGGTGACTTAGACGCT 60.081 57.895 13.29 0.00 0.00 5.07
4919 5293 4.954118 ACCGTGACAGCCCCTGGA 62.954 66.667 0.00 0.00 35.51 3.86
4930 5304 2.818841 CACACCAGTCCACCGTGA 59.181 61.111 0.00 0.00 0.00 4.35
5070 5444 5.408299 GGCAAATTTGACCATTTTGACCTAC 59.592 40.000 22.31 0.00 33.22 3.18
5149 5523 2.334023 AGAGAGAGGCAAAAGGTGAGT 58.666 47.619 0.00 0.00 0.00 3.41
5182 5566 2.980246 AAAACAGGGGAAAGAGAGGG 57.020 50.000 0.00 0.00 0.00 4.30
5213 5673 8.844244 GCTAGATTCCATGAAGTGATTAACAAT 58.156 33.333 0.00 0.00 0.00 2.71
5222 5682 6.748333 TTCAAAGCTAGATTCCATGAAGTG 57.252 37.500 2.91 0.00 0.00 3.16
5242 5702 5.715439 ACCATATTTCAGGTGAGGATTCA 57.285 39.130 0.00 0.00 36.60 2.57
5267 5731 7.744733 TCAGGATGACTATAATTGCACCAATA 58.255 34.615 0.00 0.00 42.56 1.90
5268 5732 6.604171 TCAGGATGACTATAATTGCACCAAT 58.396 36.000 0.00 0.00 42.56 3.16
5329 5949 9.924010 AGTACAGACAAATACTAGTAGGATTCT 57.076 33.333 8.12 0.00 29.70 2.40
5357 5977 7.126115 TCGGAATGGAGGGAGTACTAATAAAAA 59.874 37.037 0.00 0.00 0.00 1.94
5358 5978 6.612456 TCGGAATGGAGGGAGTACTAATAAAA 59.388 38.462 0.00 0.00 0.00 1.52
5359 5979 6.138263 TCGGAATGGAGGGAGTACTAATAAA 58.862 40.000 0.00 0.00 0.00 1.40
5360 5980 5.708544 TCGGAATGGAGGGAGTACTAATAA 58.291 41.667 0.00 0.00 0.00 1.40
5361 5981 5.329191 TCGGAATGGAGGGAGTACTAATA 57.671 43.478 0.00 0.00 0.00 0.98
5362 5982 4.194678 TCGGAATGGAGGGAGTACTAAT 57.805 45.455 0.00 0.00 0.00 1.73
5363 5983 3.675348 TCGGAATGGAGGGAGTACTAA 57.325 47.619 0.00 0.00 0.00 2.24
5364 5984 3.897657 ATCGGAATGGAGGGAGTACTA 57.102 47.619 0.00 0.00 0.00 1.82
5365 5985 2.777459 ATCGGAATGGAGGGAGTACT 57.223 50.000 0.00 0.00 0.00 2.73
5366 5986 3.840124 AAATCGGAATGGAGGGAGTAC 57.160 47.619 0.00 0.00 0.00 2.73
5367 5987 4.553678 AGTAAATCGGAATGGAGGGAGTA 58.446 43.478 0.00 0.00 0.00 2.59
5368 5988 3.385115 AGTAAATCGGAATGGAGGGAGT 58.615 45.455 0.00 0.00 0.00 3.85
5369 5989 3.996480 GAGTAAATCGGAATGGAGGGAG 58.004 50.000 0.00 0.00 0.00 4.30
5384 6004 9.462174 TCTTAAACTAAAATCACGACGAGTAAA 57.538 29.630 0.00 0.00 0.00 2.01
5385 6005 9.121517 CTCTTAAACTAAAATCACGACGAGTAA 57.878 33.333 0.00 0.00 0.00 2.24
5386 6006 7.752239 CCTCTTAAACTAAAATCACGACGAGTA 59.248 37.037 0.00 0.00 0.00 2.59
5387 6007 6.585322 CCTCTTAAACTAAAATCACGACGAGT 59.415 38.462 0.00 0.00 0.00 4.18
5388 6008 6.453922 GCCTCTTAAACTAAAATCACGACGAG 60.454 42.308 0.00 0.00 0.00 4.18
5389 6009 5.346822 GCCTCTTAAACTAAAATCACGACGA 59.653 40.000 0.00 0.00 0.00 4.20
5390 6010 5.119588 TGCCTCTTAAACTAAAATCACGACG 59.880 40.000 0.00 0.00 0.00 5.12
5391 6011 6.147328 ACTGCCTCTTAAACTAAAATCACGAC 59.853 38.462 0.00 0.00 0.00 4.34
5392 6012 6.228258 ACTGCCTCTTAAACTAAAATCACGA 58.772 36.000 0.00 0.00 0.00 4.35
5393 6013 6.481954 ACTGCCTCTTAAACTAAAATCACG 57.518 37.500 0.00 0.00 0.00 4.35
5396 6016 9.827411 CAAAGTACTGCCTCTTAAACTAAAATC 57.173 33.333 0.00 0.00 0.00 2.17
5400 6020 6.426937 CAGCAAAGTACTGCCTCTTAAACTAA 59.573 38.462 0.00 0.00 43.73 2.24
5408 6062 2.370189 ACTTCAGCAAAGTACTGCCTCT 59.630 45.455 0.00 0.00 46.55 3.69
5409 6063 2.772287 ACTTCAGCAAAGTACTGCCTC 58.228 47.619 0.00 0.00 46.55 4.70
5410 6064 2.938956 ACTTCAGCAAAGTACTGCCT 57.061 45.000 0.00 0.00 46.55 4.75
5416 6070 7.328277 ACAAACATGTTACTTCAGCAAAGTA 57.672 32.000 12.39 7.43 46.55 2.24
5418 6072 6.198966 GGAACAAACATGTTACTTCAGCAAAG 59.801 38.462 21.21 0.00 35.13 2.77
5419 6073 6.039616 GGAACAAACATGTTACTTCAGCAAA 58.960 36.000 21.21 0.00 30.24 3.68
5421 6075 4.037446 GGGAACAAACATGTTACTTCAGCA 59.963 41.667 21.21 0.00 33.31 4.41
5423 6077 5.530915 TGAGGGAACAAACATGTTACTTCAG 59.469 40.000 21.21 8.91 41.71 3.02
5429 7894 3.568007 GCTGTGAGGGAACAAACATGTTA 59.432 43.478 12.39 0.00 31.35 2.41
5431 7896 1.956477 GCTGTGAGGGAACAAACATGT 59.044 47.619 0.00 0.00 0.00 3.21
5586 8496 0.249699 TCACGCCACAGTCGACATTT 60.250 50.000 19.50 0.00 0.00 2.32
5596 8506 2.511373 GCCGATCATCACGCCACA 60.511 61.111 0.00 0.00 0.00 4.17
5712 8622 2.682136 TCGGGGTCGATCTTGGCA 60.682 61.111 0.00 0.00 40.88 4.92
5789 8699 2.494918 GTCGGCGGCTCAGTACAT 59.505 61.111 3.23 0.00 0.00 2.29
5795 8705 4.415332 GAACTCGTCGGCGGCTCA 62.415 66.667 10.62 0.00 38.89 4.26
5799 8709 1.736645 ATGTTGAACTCGTCGGCGG 60.737 57.895 10.62 2.38 38.89 6.13
5848 8775 3.509442 AGCCCTGAATTGGAAACATGAA 58.491 40.909 0.00 0.00 42.32 2.57
5858 8787 1.213537 CGCACCAAGCCCTGAATTG 59.786 57.895 0.00 0.00 41.38 2.32
5897 8828 1.171308 CCACTGTCATGCCCTTCTTG 58.829 55.000 0.00 0.00 0.00 3.02
5906 8837 0.110238 CGAAAACCGCCACTGTCATG 60.110 55.000 0.00 0.00 0.00 3.07
5919 8850 1.594331 ACAGCTCCAAGACCGAAAAC 58.406 50.000 0.00 0.00 0.00 2.43
5965 9039 5.763088 TCGATCGACCTGAAAGAATATCTG 58.237 41.667 15.15 0.00 34.07 2.90
5986 9061 6.703165 TCATGGTCATAGAACAATTCTCATCG 59.297 38.462 0.00 0.00 41.14 3.84
5989 9064 6.950842 AGTCATGGTCATAGAACAATTCTCA 58.049 36.000 0.00 0.00 41.14 3.27
5990 9065 8.948631 TTAGTCATGGTCATAGAACAATTCTC 57.051 34.615 0.00 0.00 41.14 2.87
5995 9070 9.599866 CTGTAATTAGTCATGGTCATAGAACAA 57.400 33.333 0.00 0.00 31.09 2.83
6066 9551 0.817634 TTGCAGGGTTCAAGTCCACG 60.818 55.000 0.00 0.00 0.00 4.94
6091 9576 5.741425 CAGATTATCATGCGTACCTTGTTG 58.259 41.667 0.00 0.00 0.00 3.33
6176 9688 4.124238 GCTCCGGTGCTAACAAATATACA 58.876 43.478 20.97 0.00 0.00 2.29
6177 9689 4.124238 TGCTCCGGTGCTAACAAATATAC 58.876 43.478 27.24 0.00 0.00 1.47
6179 9691 3.118408 TCTGCTCCGGTGCTAACAAATAT 60.118 43.478 27.24 0.00 0.00 1.28
6184 9699 1.185618 AGTCTGCTCCGGTGCTAACA 61.186 55.000 27.24 7.99 0.00 2.41
6189 9704 2.433318 GTCAGTCTGCTCCGGTGC 60.433 66.667 21.41 21.41 0.00 5.01
6289 9805 2.633509 CCTCTTGCACTGGCTTGGC 61.634 63.158 0.00 0.00 41.91 4.52
6377 9940 0.461548 TCATCTCCACGATCACCTGC 59.538 55.000 0.00 0.00 0.00 4.85
6504 10158 3.254166 GGATTCAGTTTCAAGCAGCAGAA 59.746 43.478 0.00 0.00 0.00 3.02
6508 10162 2.816087 TCAGGATTCAGTTTCAAGCAGC 59.184 45.455 0.00 0.00 0.00 5.25
6530 10184 3.134623 TCCATCAGGCCATAGTGTTAGTG 59.865 47.826 5.01 0.00 33.74 2.74
6536 10190 0.250038 CCGTCCATCAGGCCATAGTG 60.250 60.000 5.01 0.00 33.74 2.74
6537 10191 1.410850 CCCGTCCATCAGGCCATAGT 61.411 60.000 5.01 0.00 33.74 2.12
6618 10272 0.038166 TGAGGAAGTTCATGGGGTGC 59.962 55.000 5.01 0.00 0.00 5.01
6699 10353 2.540515 CTCATGTACATGTCCACGACC 58.459 52.381 30.03 0.00 39.72 4.79
6850 10504 0.182299 GGGATGAAGAAGAGCCAGGG 59.818 60.000 0.00 0.00 0.00 4.45
6882 10536 5.171476 AGCTGATACATGTGTGTTGTAGTC 58.829 41.667 9.11 0.00 39.77 2.59
6925 10620 5.283457 AGTCCTATAAGTGGCATGACTTC 57.717 43.478 0.00 0.00 37.38 3.01
6941 10636 7.732025 TGCTTATTTAATGAATCGGAGTCCTA 58.268 34.615 7.77 0.00 0.00 2.94
6942 10637 6.591935 TGCTTATTTAATGAATCGGAGTCCT 58.408 36.000 7.77 0.00 0.00 3.85
6964 10659 0.107945 ATCGAGCAACCCTCTTCTGC 60.108 55.000 0.00 0.00 38.49 4.26
6993 10688 1.950909 TGATGGTTTTCGCCGAGTTTT 59.049 42.857 0.00 0.00 0.00 2.43
7002 10697 2.327568 GGCATGTTGTGATGGTTTTCG 58.672 47.619 0.00 0.00 0.00 3.46
7003 10698 2.036992 TGGGCATGTTGTGATGGTTTTC 59.963 45.455 0.00 0.00 0.00 2.29
7011 10706 1.411977 CCTTTTGTGGGCATGTTGTGA 59.588 47.619 0.00 0.00 0.00 3.58
7012 10707 1.540797 CCCTTTTGTGGGCATGTTGTG 60.541 52.381 0.00 0.00 40.84 3.33
7013 10708 0.758123 CCCTTTTGTGGGCATGTTGT 59.242 50.000 0.00 0.00 40.84 3.32
7014 10709 3.610637 CCCTTTTGTGGGCATGTTG 57.389 52.632 0.00 0.00 40.84 3.33
7021 10716 1.457455 AGGTGTGCCCTTTTGTGGG 60.457 57.895 0.00 0.00 42.73 4.61
7042 10737 2.367567 GTCTTGTGGGTAGTGAGGTTGA 59.632 50.000 0.00 0.00 0.00 3.18
7043 10738 2.550208 GGTCTTGTGGGTAGTGAGGTTG 60.550 54.545 0.00 0.00 0.00 3.77
7059 10754 2.651361 CTCGACAGTGCGGGTCTT 59.349 61.111 7.03 0.00 33.11 3.01
7060 10755 3.374402 CCTCGACAGTGCGGGTCT 61.374 66.667 6.18 0.00 33.11 3.85
7061 10756 3.371063 TCCTCGACAGTGCGGGTC 61.371 66.667 6.18 0.00 0.00 4.46
7062 10757 3.681835 GTCCTCGACAGTGCGGGT 61.682 66.667 6.18 0.00 32.09 5.28
7063 10758 3.680786 TGTCCTCGACAGTGCGGG 61.681 66.667 7.03 3.91 37.67 6.13
7064 10759 2.430921 GTGTCCTCGACAGTGCGG 60.431 66.667 7.03 0.00 43.57 5.69
7065 10760 2.178892 TACGTGTCCTCGACAGTGCG 62.179 60.000 0.00 0.00 43.57 5.34
7066 10761 0.728466 GTACGTGTCCTCGACAGTGC 60.728 60.000 0.00 0.00 43.57 4.40
7080 10775 1.135575 CGGTAAGAGAAAGGCGTACGT 60.136 52.381 17.90 0.00 0.00 3.57
7081 10776 1.542544 CGGTAAGAGAAAGGCGTACG 58.457 55.000 11.84 11.84 0.00 3.67
7082 10777 1.275505 GCGGTAAGAGAAAGGCGTAC 58.724 55.000 0.00 0.00 0.00 3.67
7083 10778 0.174162 GGCGGTAAGAGAAAGGCGTA 59.826 55.000 0.00 0.00 0.00 4.42
7084 10779 1.079336 GGCGGTAAGAGAAAGGCGT 60.079 57.895 0.00 0.00 0.00 5.68
7086 10781 0.249398 TCTGGCGGTAAGAGAAAGGC 59.751 55.000 0.00 0.00 0.00 4.35
7087 10782 2.762535 TTCTGGCGGTAAGAGAAAGG 57.237 50.000 0.00 0.00 0.00 3.11
7092 10787 2.742589 GGTTTCTTTCTGGCGGTAAGAG 59.257 50.000 13.99 0.00 30.32 2.85
7093 10788 2.774687 GGTTTCTTTCTGGCGGTAAGA 58.225 47.619 10.91 10.91 0.00 2.10
7094 10789 1.463444 CGGTTTCTTTCTGGCGGTAAG 59.537 52.381 6.37 6.37 0.00 2.34
7096 10791 0.952010 GCGGTTTCTTTCTGGCGGTA 60.952 55.000 0.00 0.00 0.00 4.02
7097 10792 2.258726 GCGGTTTCTTTCTGGCGGT 61.259 57.895 0.00 0.00 0.00 5.68
7098 10793 1.586154 ATGCGGTTTCTTTCTGGCGG 61.586 55.000 0.00 0.00 0.00 6.13
7099 10794 0.179189 GATGCGGTTTCTTTCTGGCG 60.179 55.000 0.00 0.00 0.00 5.69
7100 10795 0.179189 CGATGCGGTTTCTTTCTGGC 60.179 55.000 0.00 0.00 0.00 4.85
7102 10797 3.674423 GATTCGATGCGGTTTCTTTCTG 58.326 45.455 0.00 0.00 0.00 3.02
7103 10798 2.348666 CGATTCGATGCGGTTTCTTTCT 59.651 45.455 0.00 0.00 0.00 2.52
7104 10799 2.694043 CGATTCGATGCGGTTTCTTTC 58.306 47.619 0.00 0.00 0.00 2.62
7105 10800 1.202031 GCGATTCGATGCGGTTTCTTT 60.202 47.619 10.88 0.00 0.00 2.52
7106 10801 0.373716 GCGATTCGATGCGGTTTCTT 59.626 50.000 10.88 0.00 0.00 2.52
7107 10802 1.429148 GGCGATTCGATGCGGTTTCT 61.429 55.000 10.88 0.00 0.00 2.52
7108 10803 1.011131 GGCGATTCGATGCGGTTTC 60.011 57.895 10.88 0.00 0.00 2.78
7109 10804 1.095228 ATGGCGATTCGATGCGGTTT 61.095 50.000 10.88 0.00 0.00 3.27
7123 10818 1.361668 CTTGTTGTCGGAGGATGGCG 61.362 60.000 0.00 0.00 0.00 5.69
7136 10831 4.214332 GGAGGAAGTAAGCAGTTCTTGTTG 59.786 45.833 0.00 0.00 36.25 3.33
7144 10839 0.896226 GGACGGAGGAAGTAAGCAGT 59.104 55.000 0.00 0.00 0.00 4.40
7145 10840 0.175989 GGGACGGAGGAAGTAAGCAG 59.824 60.000 0.00 0.00 0.00 4.24
7146 10841 0.543410 TGGGACGGAGGAAGTAAGCA 60.543 55.000 0.00 0.00 0.00 3.91
7147 10842 0.831307 ATGGGACGGAGGAAGTAAGC 59.169 55.000 0.00 0.00 0.00 3.09
7150 10845 7.472741 TCTTATATTATGGGACGGAGGAAGTA 58.527 38.462 0.00 0.00 0.00 2.24
7151 10846 6.320518 TCTTATATTATGGGACGGAGGAAGT 58.679 40.000 0.00 0.00 0.00 3.01
7152 10847 6.852420 TCTTATATTATGGGACGGAGGAAG 57.148 41.667 0.00 0.00 0.00 3.46
7153 10848 6.729100 ACATCTTATATTATGGGACGGAGGAA 59.271 38.462 0.00 0.00 0.00 3.36
7154 10849 6.261435 ACATCTTATATTATGGGACGGAGGA 58.739 40.000 0.00 0.00 0.00 3.71
7155 10850 6.546428 ACATCTTATATTATGGGACGGAGG 57.454 41.667 0.00 0.00 0.00 4.30
7171 10866 9.638239 GGATGCAAATTTGTTCTTAACATCTTA 57.362 29.630 19.03 0.00 41.79 2.10
7172 10867 8.370182 AGGATGCAAATTTGTTCTTAACATCTT 58.630 29.630 19.03 13.61 41.79 2.40
7173 10868 7.899973 AGGATGCAAATTTGTTCTTAACATCT 58.100 30.769 19.03 8.60 41.79 2.90
7174 10869 9.076596 GTAGGATGCAAATTTGTTCTTAACATC 57.923 33.333 19.03 18.07 41.79 3.06
7175 10870 8.584157 TGTAGGATGCAAATTTGTTCTTAACAT 58.416 29.630 19.03 11.56 41.79 2.71
7176 10871 7.946207 TGTAGGATGCAAATTTGTTCTTAACA 58.054 30.769 19.03 13.61 40.21 2.41
7177 10872 8.699749 GTTGTAGGATGCAAATTTGTTCTTAAC 58.300 33.333 19.03 11.52 43.85 2.01
7178 10873 8.417106 TGTTGTAGGATGCAAATTTGTTCTTAA 58.583 29.630 19.03 4.03 43.85 1.85
7179 10874 7.946207 TGTTGTAGGATGCAAATTTGTTCTTA 58.054 30.769 19.03 13.43 43.85 2.10
7180 10875 6.815089 TGTTGTAGGATGCAAATTTGTTCTT 58.185 32.000 19.03 14.29 43.85 2.52
7181 10876 6.403866 TGTTGTAGGATGCAAATTTGTTCT 57.596 33.333 19.03 12.96 43.85 3.01
7182 10877 7.437862 TCTTTGTTGTAGGATGCAAATTTGTTC 59.562 33.333 19.03 15.18 43.85 3.18
7183 10878 7.224557 GTCTTTGTTGTAGGATGCAAATTTGTT 59.775 33.333 19.03 7.67 43.85 2.83
7184 10879 6.701400 GTCTTTGTTGTAGGATGCAAATTTGT 59.299 34.615 19.03 0.26 43.85 2.83
7185 10880 6.925165 AGTCTTTGTTGTAGGATGCAAATTTG 59.075 34.615 14.03 14.03 43.85 2.32
7186 10881 6.925165 CAGTCTTTGTTGTAGGATGCAAATTT 59.075 34.615 0.00 0.00 43.85 1.82
7187 10882 6.449698 CAGTCTTTGTTGTAGGATGCAAATT 58.550 36.000 0.00 0.00 43.85 1.82
7188 10883 5.565439 GCAGTCTTTGTTGTAGGATGCAAAT 60.565 40.000 0.00 0.00 43.85 2.32
7189 10884 4.261572 GCAGTCTTTGTTGTAGGATGCAAA 60.262 41.667 0.00 0.00 43.85 3.68
7190 10885 3.253188 GCAGTCTTTGTTGTAGGATGCAA 59.747 43.478 0.00 0.00 38.75 4.08
7191 10886 2.813754 GCAGTCTTTGTTGTAGGATGCA 59.186 45.455 0.00 0.00 0.00 3.96
7192 10887 3.077359 AGCAGTCTTTGTTGTAGGATGC 58.923 45.455 0.00 0.00 0.00 3.91
7193 10888 4.516698 ACAAGCAGTCTTTGTTGTAGGATG 59.483 41.667 0.00 0.00 32.79 3.51
7194 10889 4.718961 ACAAGCAGTCTTTGTTGTAGGAT 58.281 39.130 0.00 0.00 32.79 3.24
7195 10890 4.150897 ACAAGCAGTCTTTGTTGTAGGA 57.849 40.909 0.00 0.00 32.79 2.94
7196 10891 4.601019 CAACAAGCAGTCTTTGTTGTAGG 58.399 43.478 16.90 0.00 37.02 3.18
7197 10892 4.037690 GCAACAAGCAGTCTTTGTTGTAG 58.962 43.478 22.37 6.74 44.79 2.74
7198 10893 4.027572 GCAACAAGCAGTCTTTGTTGTA 57.972 40.909 22.37 0.00 44.79 2.41
7199 10894 2.879826 GCAACAAGCAGTCTTTGTTGT 58.120 42.857 22.37 8.15 44.79 3.32
7211 10906 1.454201 GGAGGAAGTAGGCAACAAGC 58.546 55.000 0.00 0.00 44.65 4.01
7212 10907 1.002087 ACGGAGGAAGTAGGCAACAAG 59.998 52.381 0.00 0.00 41.41 3.16
7213 10908 1.001633 GACGGAGGAAGTAGGCAACAA 59.998 52.381 0.00 0.00 41.41 2.83
7214 10909 0.606604 GACGGAGGAAGTAGGCAACA 59.393 55.000 0.00 0.00 41.41 3.33
7215 10910 0.108281 GGACGGAGGAAGTAGGCAAC 60.108 60.000 0.00 0.00 0.00 4.17
7216 10911 1.262640 GGGACGGAGGAAGTAGGCAA 61.263 60.000 0.00 0.00 0.00 4.52
7217 10912 1.684734 GGGACGGAGGAAGTAGGCA 60.685 63.158 0.00 0.00 0.00 4.75
7218 10913 1.049289 ATGGGACGGAGGAAGTAGGC 61.049 60.000 0.00 0.00 0.00 3.93
7219 10914 2.376695 TATGGGACGGAGGAAGTAGG 57.623 55.000 0.00 0.00 0.00 3.18
7220 10915 7.713734 TTATATTATGGGACGGAGGAAGTAG 57.286 40.000 0.00 0.00 0.00 2.57
7221 10916 8.495160 TTTTATATTATGGGACGGAGGAAGTA 57.505 34.615 0.00 0.00 0.00 2.24
7222 10917 7.383156 TTTTATATTATGGGACGGAGGAAGT 57.617 36.000 0.00 0.00 0.00 3.01
7223 10918 7.883311 ACATTTTATATTATGGGACGGAGGAAG 59.117 37.037 0.00 0.00 0.00 3.46
7224 10919 7.751646 ACATTTTATATTATGGGACGGAGGAA 58.248 34.615 0.00 0.00 0.00 3.36
7225 10920 7.324388 ACATTTTATATTATGGGACGGAGGA 57.676 36.000 0.00 0.00 0.00 3.71
7226 10921 7.996098 AACATTTTATATTATGGGACGGAGG 57.004 36.000 0.00 0.00 0.00 4.30
7243 10938 9.341078 AGGATGCAAATTTGTTCTTAACATTTT 57.659 25.926 19.03 3.13 41.79 1.82
7244 10939 8.907222 AGGATGCAAATTTGTTCTTAACATTT 57.093 26.923 19.03 3.42 41.79 2.32
7245 10940 9.423061 GTAGGATGCAAATTTGTTCTTAACATT 57.577 29.630 19.03 2.18 41.79 2.71
7246 10941 8.584157 TGTAGGATGCAAATTTGTTCTTAACAT 58.416 29.630 19.03 11.56 41.79 2.71
7247 10942 7.946207 TGTAGGATGCAAATTTGTTCTTAACA 58.054 30.769 19.03 13.61 40.21 2.41
7248 10943 8.699749 GTTGTAGGATGCAAATTTGTTCTTAAC 58.300 33.333 19.03 11.52 43.85 2.01
7249 10944 8.417106 TGTTGTAGGATGCAAATTTGTTCTTAA 58.583 29.630 19.03 4.03 43.85 1.85
7250 10945 7.946207 TGTTGTAGGATGCAAATTTGTTCTTA 58.054 30.769 19.03 13.43 43.85 2.10
7251 10946 6.815089 TGTTGTAGGATGCAAATTTGTTCTT 58.185 32.000 19.03 14.29 43.85 2.52
7252 10947 6.403866 TGTTGTAGGATGCAAATTTGTTCT 57.596 33.333 19.03 12.96 43.85 3.01
7253 10948 6.146021 CCTTGTTGTAGGATGCAAATTTGTTC 59.854 38.462 19.03 15.18 43.85 3.18
7254 10949 5.990996 CCTTGTTGTAGGATGCAAATTTGTT 59.009 36.000 19.03 7.67 43.85 2.83
7255 10950 5.304101 TCCTTGTTGTAGGATGCAAATTTGT 59.696 36.000 19.03 0.26 43.85 2.83
7256 10951 5.634859 GTCCTTGTTGTAGGATGCAAATTTG 59.365 40.000 14.03 14.03 43.85 2.32
7257 10952 5.539955 AGTCCTTGTTGTAGGATGCAAATTT 59.460 36.000 0.00 0.00 43.85 1.82
7258 10953 5.047802 CAGTCCTTGTTGTAGGATGCAAATT 60.048 40.000 0.00 0.00 43.85 1.82
7259 10954 4.460382 CAGTCCTTGTTGTAGGATGCAAAT 59.540 41.667 0.00 0.00 43.85 2.32
7260 10955 3.820467 CAGTCCTTGTTGTAGGATGCAAA 59.180 43.478 0.00 0.00 43.85 3.68
7261 10956 3.411446 CAGTCCTTGTTGTAGGATGCAA 58.589 45.455 0.00 0.00 45.69 4.08
7262 10957 2.875672 GCAGTCCTTGTTGTAGGATGCA 60.876 50.000 15.70 0.00 45.69 3.96
7263 10958 1.740025 GCAGTCCTTGTTGTAGGATGC 59.260 52.381 0.00 0.00 45.69 3.91
7264 10959 3.340814 AGCAGTCCTTGTTGTAGGATG 57.659 47.619 0.00 0.00 45.69 3.51
7265 10960 3.679389 CAAGCAGTCCTTGTTGTAGGAT 58.321 45.455 0.00 0.00 45.69 3.24
7266 10961 3.126001 CAAGCAGTCCTTGTTGTAGGA 57.874 47.619 0.00 0.00 44.74 2.94
7282 10977 1.454201 GGAGGAAGTAGGCAACAAGC 58.546 55.000 0.00 0.00 44.65 4.01
7283 10978 1.002087 ACGGAGGAAGTAGGCAACAAG 59.998 52.381 0.00 0.00 41.41 3.16
7284 10979 1.001633 GACGGAGGAAGTAGGCAACAA 59.998 52.381 0.00 0.00 41.41 2.83
7285 10980 0.606604 GACGGAGGAAGTAGGCAACA 59.393 55.000 0.00 0.00 41.41 3.33
7286 10981 0.108281 GGACGGAGGAAGTAGGCAAC 60.108 60.000 0.00 0.00 0.00 4.17
7287 10982 1.262640 GGGACGGAGGAAGTAGGCAA 61.263 60.000 0.00 0.00 0.00 4.52
7288 10983 1.684734 GGGACGGAGGAAGTAGGCA 60.685 63.158 0.00 0.00 0.00 4.75
7289 10984 1.049289 ATGGGACGGAGGAAGTAGGC 61.049 60.000 0.00 0.00 0.00 3.93
7290 10985 2.376695 TATGGGACGGAGGAAGTAGG 57.623 55.000 0.00 0.00 0.00 3.18
7291 10986 7.614583 TCTTATATTATGGGACGGAGGAAGTAG 59.385 40.741 0.00 0.00 0.00 2.57
7292 10987 7.472741 TCTTATATTATGGGACGGAGGAAGTA 58.527 38.462 0.00 0.00 0.00 2.24
7293 10988 6.320518 TCTTATATTATGGGACGGAGGAAGT 58.679 40.000 0.00 0.00 0.00 3.01
7294 10989 6.852420 TCTTATATTATGGGACGGAGGAAG 57.148 41.667 0.00 0.00 0.00 3.46
7295 10990 6.729100 ACATCTTATATTATGGGACGGAGGAA 59.271 38.462 0.00 0.00 0.00 3.36
7296 10991 6.261435 ACATCTTATATTATGGGACGGAGGA 58.739 40.000 0.00 0.00 0.00 3.71
7297 10992 6.546428 ACATCTTATATTATGGGACGGAGG 57.454 41.667 0.00 0.00 0.00 4.30
7298 10993 9.587772 CTTAACATCTTATATTATGGGACGGAG 57.412 37.037 0.00 0.00 0.00 4.63
7299 10994 9.316594 TCTTAACATCTTATATTATGGGACGGA 57.683 33.333 0.00 0.00 0.00 4.69
7300 10995 9.938280 TTCTTAACATCTTATATTATGGGACGG 57.062 33.333 0.00 0.00 0.00 4.79
7385 11080 8.055279 TCCAACTGGATCTTGTATCAAAATTC 57.945 34.615 0.00 0.00 39.78 2.17
7524 11546 5.065235 TCATCTGCTGTGATGAGAAACAAA 58.935 37.500 11.56 0.00 45.29 2.83
7564 11586 0.251341 CTTCCAGTCAAAGGGTGGGG 60.251 60.000 0.00 0.00 31.70 4.96
7569 11591 1.160137 CGCTTCTTCCAGTCAAAGGG 58.840 55.000 0.00 0.00 0.00 3.95
7579 11601 0.384353 GTTTCACGCACGCTTCTTCC 60.384 55.000 0.00 0.00 0.00 3.46
7678 11700 3.511540 TGGATCTGACTGTACTCAACCAG 59.488 47.826 0.00 0.00 34.82 4.00
7689 11711 6.680810 TGTAAAATTTGCTTGGATCTGACTG 58.319 36.000 0.00 0.00 0.00 3.51
7691 11713 7.147976 ACTTGTAAAATTTGCTTGGATCTGAC 58.852 34.615 0.00 0.00 0.00 3.51
7736 11776 2.771943 GTTATGTCCCTGGATCCTGTCA 59.228 50.000 14.23 11.26 0.00 3.58
7741 11781 3.864789 ACATGTTATGTCCCTGGATCC 57.135 47.619 4.20 4.20 39.92 3.36
7797 11837 2.356069 GCCTGATCAAAATTCGGAGACC 59.644 50.000 0.00 0.00 34.32 3.85
7816 11856 1.523758 ACATGGTCGAGTTCTTTGCC 58.476 50.000 0.00 0.00 0.00 4.52
7818 11858 4.552166 AACAACATGGTCGAGTTCTTTG 57.448 40.909 0.00 0.00 0.00 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.