Multiple sequence alignment - TraesCS5B01G189000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G189000 chr5B 100.000 5035 0 0 1 5035 341050232 341055266 0.000000e+00 9299.0
1 TraesCS5B01G189000 chr5D 94.022 2877 111 33 731 3578 299810121 299812965 0.000000e+00 4303.0
2 TraesCS5B01G189000 chr5D 91.007 1390 80 26 3681 5035 299812968 299814347 0.000000e+00 1832.0
3 TraesCS5B01G189000 chr5D 87.527 457 34 14 199 647 299809631 299810072 1.620000e-139 507.0
4 TraesCS5B01G189000 chr5D 92.188 192 15 0 23 214 299809425 299809616 6.420000e-69 272.0
5 TraesCS5B01G189000 chr5D 91.304 46 4 0 1 46 341685499 341685544 4.210000e-06 63.9
6 TraesCS5B01G189000 chr5D 89.796 49 5 0 2 50 434035726 434035678 4.210000e-06 63.9
7 TraesCS5B01G189000 chr5A 94.372 1617 61 12 1769 3382 397144307 397145896 0.000000e+00 2455.0
8 TraesCS5B01G189000 chr5A 89.736 1403 54 33 3681 5035 397146197 397147557 0.000000e+00 1711.0
9 TraesCS5B01G189000 chr5A 86.617 1076 67 34 581 1632 397143288 397144310 0.000000e+00 1118.0
10 TraesCS5B01G189000 chr5A 90.948 232 12 7 198 424 397143044 397143271 2.280000e-78 303.0
11 TraesCS5B01G189000 chr5A 93.500 200 6 2 3381 3578 397146000 397146194 1.770000e-74 291.0
12 TraesCS5B01G189000 chr5A 89.500 200 19 2 16 214 397142834 397143032 8.370000e-63 252.0
13 TraesCS5B01G189000 chr5A 97.436 39 1 0 3075 3113 463758818 463758856 3.250000e-07 67.6
14 TraesCS5B01G189000 chr5A 91.304 46 4 0 1 46 442804250 442804295 4.210000e-06 63.9
15 TraesCS5B01G189000 chr1A 84.641 306 18 14 4631 4927 543638599 543638884 1.380000e-70 278.0
16 TraesCS5B01G189000 chr1A 96.970 99 3 0 3581 3679 94557753 94557851 3.120000e-37 167.0
17 TraesCS5B01G189000 chr1A 95.455 44 1 1 3071 3114 26987488 26987530 9.050000e-08 69.4
18 TraesCS5B01G189000 chr3A 89.209 139 15 0 1639 1777 488253006 488252868 1.860000e-39 174.0
19 TraesCS5B01G189000 chr3A 80.503 159 23 5 1635 1785 17450152 17450310 1.150000e-21 115.0
20 TraesCS5B01G189000 chr3A 87.931 58 5 1 3075 3132 729116924 729116869 3.250000e-07 67.6
21 TraesCS5B01G189000 chrUn 96.970 99 3 0 3581 3679 182440126 182440224 3.120000e-37 167.0
22 TraesCS5B01G189000 chrUn 96.970 99 3 0 3581 3679 421101342 421101440 3.120000e-37 167.0
23 TraesCS5B01G189000 chrUn 96.078 102 4 0 3581 3682 435220548 435220447 3.120000e-37 167.0
24 TraesCS5B01G189000 chrUn 83.444 151 15 7 1644 1784 290145904 290145754 1.140000e-26 132.0
25 TraesCS5B01G189000 chr7D 96.078 102 4 0 3581 3682 381948780 381948679 3.120000e-37 167.0
26 TraesCS5B01G189000 chr7D 96.970 99 3 0 3581 3679 449412930 449413028 3.120000e-37 167.0
27 TraesCS5B01G189000 chr7D 82.171 129 19 4 1653 1778 100740485 100740358 1.920000e-19 108.0
28 TraesCS5B01G189000 chr7D 95.349 43 1 1 3071 3113 506679475 506679434 3.250000e-07 67.6
29 TraesCS5B01G189000 chr4D 96.078 102 4 0 3581 3682 398052573 398052472 3.120000e-37 167.0
30 TraesCS5B01G189000 chr4D 81.333 150 25 1 1639 1785 381892715 381892864 8.860000e-23 119.0
31 TraesCS5B01G189000 chr4D 91.837 49 3 1 3075 3122 497218383 497218431 3.250000e-07 67.6
32 TraesCS5B01G189000 chr3D 96.078 102 4 0 3581 3682 478067318 478067217 3.120000e-37 167.0
33 TraesCS5B01G189000 chr2D 96.970 99 3 0 3581 3679 306143563 306143661 3.120000e-37 167.0
34 TraesCS5B01G189000 chr2D 85.714 105 15 0 1681 1785 400383479 400383375 1.480000e-20 111.0
35 TraesCS5B01G189000 chr6B 82.759 145 25 0 1639 1783 142711887 142712031 4.090000e-26 130.0
36 TraesCS5B01G189000 chr6B 95.556 45 1 1 3069 3113 203686754 203686797 2.510000e-08 71.3
37 TraesCS5B01G189000 chr2A 82.667 150 23 1 1639 1785 194551860 194552009 4.090000e-26 130.0
38 TraesCS5B01G189000 chr2A 93.333 45 3 0 3075 3119 738435814 738435858 3.250000e-07 67.6
39 TraesCS5B01G189000 chr7B 97.500 40 1 0 3075 3114 594420801 594420762 9.050000e-08 69.4
40 TraesCS5B01G189000 chr2B 93.478 46 3 0 1 46 787971575 787971530 9.050000e-08 69.4
41 TraesCS5B01G189000 chr6A 93.333 45 3 0 2 46 502841051 502841095 3.250000e-07 67.6
42 TraesCS5B01G189000 chr1D 91.304 46 4 0 1 46 299893955 299894000 4.210000e-06 63.9
43 TraesCS5B01G189000 chr7A 88.000 50 6 0 1 50 512171975 512172024 5.440000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G189000 chr5B 341050232 341055266 5034 False 9299.000000 9299 100.000000 1 5035 1 chr5B.!!$F1 5034
1 TraesCS5B01G189000 chr5D 299809425 299814347 4922 False 1728.500000 4303 91.186000 23 5035 4 chr5D.!!$F2 5012
2 TraesCS5B01G189000 chr5A 397142834 397147557 4723 False 1021.666667 2455 90.778833 16 5035 6 chr5A.!!$F3 5019

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
515 553 0.038892 TGCGGTCGGAAGAAGTACAC 60.039 55.0 0.00 0.0 45.01 2.90 F
1265 1343 0.035458 CTCTTCCTGCTCCGTTTGGT 59.965 55.0 0.00 0.0 36.30 3.67 F
1401 1480 0.179100 CGAGTGATTGATCGCTGGGT 60.179 55.0 11.48 0.0 46.75 4.51 F
2268 2356 0.599991 TGACAGTGTCACCGATGCAC 60.600 55.0 22.06 0.0 37.67 4.57 F
3645 3846 0.253610 ACGTGTGTCTCCAAAACCCA 59.746 50.0 0.00 0.0 0.00 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1814 1900 0.622665 ATTGTTCTCCAGGCTCCAGG 59.377 55.000 0.00 0.0 0.00 4.45 R
2853 2942 0.388134 GAGCACTAGTTCCGAACGCA 60.388 55.000 5.62 0.0 36.23 5.24 R
3095 3187 4.607239 ACATCTACTCCCTCCGTAAAGAA 58.393 43.478 0.00 0.0 0.00 2.52 R
3673 3874 0.031994 AGCCAACGGTGCAAAATCAC 59.968 50.000 0.00 0.0 36.28 3.06 R
4705 4929 0.107508 CACCTGCTCCCATCGTGATT 60.108 55.000 0.00 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.826385 GGTCCTGATGGTTGTGGAAG 58.174 55.000 0.00 0.00 34.23 3.46
20 21 1.614317 GGTCCTGATGGTTGTGGAAGG 60.614 57.143 0.00 0.00 34.23 3.46
21 22 1.073923 GTCCTGATGGTTGTGGAAGGT 59.926 52.381 0.00 0.00 34.23 3.50
46 47 3.008517 TCCGCCTTGGAGATGCCA 61.009 61.111 0.00 0.00 43.74 4.92
63 64 4.468765 TGCCATTAACCAATCCAACATG 57.531 40.909 0.00 0.00 0.00 3.21
93 94 7.770201 AGAAGAAATCTAAAGTAGTACCCGAC 58.230 38.462 0.00 0.00 36.32 4.79
96 97 8.993404 AGAAATCTAAAGTAGTACCCGACTAT 57.007 34.615 0.00 0.00 42.69 2.12
115 116 7.852945 CCGACTATACAAGATCAATCAAAAAGC 59.147 37.037 0.00 0.00 0.00 3.51
185 186 2.482494 ACCTCTTGATGAACTAGGGGG 58.518 52.381 0.00 0.00 44.32 5.40
186 187 1.141858 CCTCTTGATGAACTAGGGGGC 59.858 57.143 0.00 0.00 38.13 5.80
204 206 2.459934 GGCAAAAGTCCACAAAAGACG 58.540 47.619 0.00 0.00 39.31 4.18
280 312 9.442047 CTATATTCCAAAGGACTCCACATAATC 57.558 37.037 0.00 0.00 0.00 1.75
293 325 6.374333 ACTCCACATAATCGTATGCAACTTTT 59.626 34.615 0.00 0.00 40.83 2.27
294 326 7.094377 ACTCCACATAATCGTATGCAACTTTTT 60.094 33.333 0.00 0.00 40.83 1.94
300 332 9.941991 CATAATCGTATGCAACTTTTTGAAAAG 57.058 29.630 13.21 13.21 39.72 2.27
387 424 4.519350 TGTCCACTTGTGTGTGTGTTTTTA 59.481 37.500 0.00 0.00 42.34 1.52
406 443 8.763356 TGTTTTTAATCTCAAATTGCACATGAC 58.237 29.630 0.00 0.00 0.00 3.06
446 483 8.916628 AAACCACAATAAGCCAAATTAACATT 57.083 26.923 0.00 0.00 0.00 2.71
454 492 3.582208 AGCCAAATTAACATTTGCTCCCA 59.418 39.130 2.66 0.00 45.63 4.37
461 499 1.750399 CATTTGCTCCCAGGTCCGG 60.750 63.158 0.00 0.00 0.00 5.14
468 506 1.497161 CTCCCAGGTCCGGAATTAGT 58.503 55.000 5.23 0.00 0.00 2.24
476 514 2.669924 GGTCCGGAATTAGTTGACGTTC 59.330 50.000 5.23 0.00 0.00 3.95
477 515 3.319755 GTCCGGAATTAGTTGACGTTCA 58.680 45.455 5.23 0.00 0.00 3.18
478 516 3.742369 GTCCGGAATTAGTTGACGTTCAA 59.258 43.478 5.23 0.00 33.32 2.69
479 517 4.211794 GTCCGGAATTAGTTGACGTTCAAA 59.788 41.667 5.23 0.00 38.22 2.69
480 518 4.211794 TCCGGAATTAGTTGACGTTCAAAC 59.788 41.667 0.00 0.00 38.22 2.93
481 519 4.024725 CCGGAATTAGTTGACGTTCAAACA 60.025 41.667 0.00 0.00 38.22 2.83
482 520 5.137403 CGGAATTAGTTGACGTTCAAACAG 58.863 41.667 10.94 0.00 38.22 3.16
483 521 5.050634 CGGAATTAGTTGACGTTCAAACAGA 60.051 40.000 10.94 1.84 38.22 3.41
484 522 6.347402 CGGAATTAGTTGACGTTCAAACAGAT 60.347 38.462 10.94 3.59 38.22 2.90
485 523 6.797033 GGAATTAGTTGACGTTCAAACAGATG 59.203 38.462 10.94 0.00 38.22 2.90
492 530 8.035394 AGTTGACGTTCAAACAGATGTATCTAT 58.965 33.333 10.94 0.00 38.22 1.98
501 539 3.891977 ACAGATGTATCTATCACTGCGGT 59.108 43.478 0.00 0.00 34.85 5.68
507 545 0.738975 TCTATCACTGCGGTCGGAAG 59.261 55.000 0.00 0.00 0.00 3.46
515 553 0.038892 TGCGGTCGGAAGAAGTACAC 60.039 55.000 0.00 0.00 45.01 2.90
527 567 5.235616 GGAAGAAGTACACAACGAAACATCA 59.764 40.000 0.00 0.00 0.00 3.07
530 570 5.234329 AGAAGTACACAACGAAACATCACAG 59.766 40.000 0.00 0.00 0.00 3.66
534 574 1.526887 ACAACGAAACATCACAGCGAG 59.473 47.619 0.00 0.00 0.00 5.03
536 576 1.057822 CGAAACATCACAGCGAGCG 59.942 57.895 0.00 0.00 0.00 5.03
539 579 1.194547 GAAACATCACAGCGAGCGAAA 59.805 47.619 0.00 0.00 0.00 3.46
541 581 1.442769 ACATCACAGCGAGCGAAAAT 58.557 45.000 0.00 0.00 0.00 1.82
544 584 2.363788 TCACAGCGAGCGAAAATACT 57.636 45.000 0.00 0.00 0.00 2.12
546 586 1.061131 CACAGCGAGCGAAAATACTGG 59.939 52.381 0.00 0.00 0.00 4.00
568 613 9.290988 ACTGGTTGTATTTTTGTGTGTATATGA 57.709 29.630 0.00 0.00 0.00 2.15
570 615 8.240682 TGGTTGTATTTTTGTGTGTATATGAGC 58.759 33.333 0.00 0.00 0.00 4.26
575 620 2.959507 TGTGTGTATATGAGCGCACT 57.040 45.000 11.47 0.00 43.91 4.40
576 621 2.539476 TGTGTGTATATGAGCGCACTG 58.461 47.619 11.47 0.00 43.91 3.66
666 728 7.628769 TGATTACATGAGCATAGCAAGAAAA 57.371 32.000 0.00 0.00 0.00 2.29
675 737 7.700505 TGAGCATAGCAAGAAAAATGTGATAG 58.299 34.615 0.00 0.00 0.00 2.08
676 738 7.337689 TGAGCATAGCAAGAAAAATGTGATAGT 59.662 33.333 0.00 0.00 0.00 2.12
679 741 9.956720 GCATAGCAAGAAAAATGTGATAGTAAT 57.043 29.630 0.00 0.00 0.00 1.89
714 776 9.899226 AAAAAGAGAAAGATGTGTTAGTAATGC 57.101 29.630 0.00 0.00 0.00 3.56
715 777 7.617041 AAGAGAAAGATGTGTTAGTAATGCC 57.383 36.000 0.00 0.00 0.00 4.40
716 778 6.951971 AGAGAAAGATGTGTTAGTAATGCCT 58.048 36.000 0.00 0.00 0.00 4.75
717 779 7.398024 AGAGAAAGATGTGTTAGTAATGCCTT 58.602 34.615 0.00 0.00 0.00 4.35
720 782 9.515226 AGAAAGATGTGTTAGTAATGCCTTTTA 57.485 29.630 0.00 0.00 0.00 1.52
777 839 1.604755 CGTGTGGAAACCCGAAAATGA 59.395 47.619 0.00 0.00 0.00 2.57
883 945 5.753921 CGTAGAATTTCTCCGCCTTTATTCT 59.246 40.000 1.27 0.00 36.58 2.40
885 947 5.995446 AGAATTTCTCCGCCTTTATTCTCT 58.005 37.500 0.00 0.00 28.98 3.10
893 958 2.413601 GCCTTTATTCTCTCCTCCCCT 58.586 52.381 0.00 0.00 0.00 4.79
894 959 2.370519 GCCTTTATTCTCTCCTCCCCTC 59.629 54.545 0.00 0.00 0.00 4.30
895 960 2.630580 CCTTTATTCTCTCCTCCCCTCG 59.369 54.545 0.00 0.00 0.00 4.63
896 961 1.705873 TTATTCTCTCCTCCCCTCGC 58.294 55.000 0.00 0.00 0.00 5.03
897 962 0.854218 TATTCTCTCCTCCCCTCGCT 59.146 55.000 0.00 0.00 0.00 4.93
898 963 0.469144 ATTCTCTCCTCCCCTCGCTC 60.469 60.000 0.00 0.00 0.00 5.03
899 964 2.520741 CTCTCCTCCCCTCGCTCC 60.521 72.222 0.00 0.00 0.00 4.70
912 977 3.773154 GCTCCCTCCCTCCCTCCT 61.773 72.222 0.00 0.00 0.00 3.69
937 1002 4.541648 ACCTATCCGCCGCCTCCT 62.542 66.667 0.00 0.00 0.00 3.69
1102 1167 1.439679 GCGTTCGTGGGATCTTCTTT 58.560 50.000 0.00 0.00 0.00 2.52
1115 1181 0.179070 CTTCTTTCCCCCGAGCTAGC 60.179 60.000 6.62 6.62 0.00 3.42
1141 1207 2.093288 TCCCTGTGAGATGTGCTGATTC 60.093 50.000 0.00 0.00 0.00 2.52
1143 1209 3.340928 CCTGTGAGATGTGCTGATTCAA 58.659 45.455 0.00 0.00 0.00 2.69
1263 1341 1.270305 TGTCTCTTCCTGCTCCGTTTG 60.270 52.381 0.00 0.00 0.00 2.93
1265 1343 0.035458 CTCTTCCTGCTCCGTTTGGT 59.965 55.000 0.00 0.00 36.30 3.67
1277 1355 2.355363 TTTGGTCAGGTCGCGTCG 60.355 61.111 5.77 0.00 0.00 5.12
1278 1356 3.141522 TTTGGTCAGGTCGCGTCGT 62.142 57.895 5.77 0.00 0.00 4.34
1279 1357 2.632136 TTTGGTCAGGTCGCGTCGTT 62.632 55.000 5.77 0.00 0.00 3.85
1280 1358 3.103911 GGTCAGGTCGCGTCGTTG 61.104 66.667 5.77 2.96 0.00 4.10
1281 1359 3.764049 GTCAGGTCGCGTCGTTGC 61.764 66.667 5.77 0.00 0.00 4.17
1336 1415 4.707448 TGATCCGGGCTCTAGAGATTATTC 59.293 45.833 24.24 11.89 0.00 1.75
1354 1433 4.559862 ATTCGGTTTCCTGATCTGTTCT 57.440 40.909 0.00 0.00 0.00 3.01
1357 1436 2.352814 CGGTTTCCTGATCTGTTCTCGT 60.353 50.000 0.00 0.00 0.00 4.18
1359 1438 3.306088 GGTTTCCTGATCTGTTCTCGTGA 60.306 47.826 0.00 0.00 0.00 4.35
1374 1453 4.811908 TCTCGTGATTTATTGTCGTTCCA 58.188 39.130 0.00 0.00 0.00 3.53
1401 1480 0.179100 CGAGTGATTGATCGCTGGGT 60.179 55.000 11.48 0.00 46.75 4.51
1416 1495 1.343465 CTGGGTAGTGGTTTGACGACT 59.657 52.381 0.00 1.55 40.33 4.18
1435 1520 2.831742 CTGGGTAGCGCGAGGGTA 60.832 66.667 12.10 0.00 0.00 3.69
1437 1522 2.143594 CTGGGTAGCGCGAGGGTATC 62.144 65.000 12.10 0.00 0.00 2.24
1497 1583 3.340814 TGTGGTTTGCATTTGTTTGGT 57.659 38.095 0.00 0.00 0.00 3.67
1567 1653 3.263170 TGGAACTCAATGTGCTAGCCTTA 59.737 43.478 13.29 0.00 0.00 2.69
1678 1764 7.257790 TCTATATGTGCCCTAAGTATTGCAT 57.742 36.000 0.00 0.00 35.96 3.96
1682 1768 3.054434 TGTGCCCTAAGTATTGCATGTCT 60.054 43.478 0.00 0.00 35.96 3.41
1699 1785 5.525378 GCATGTCTAAGTCCTAAGTCATTGG 59.475 44.000 0.00 0.00 0.00 3.16
1705 1791 8.933807 GTCTAAGTCCTAAGTCATTGGTTTTAC 58.066 37.037 0.00 0.00 0.00 2.01
1814 1900 4.130118 CCTACCAAGTCATCAACATAGGC 58.870 47.826 0.00 0.00 0.00 3.93
1935 2021 2.285368 CTGGGGCTGTAGGTGGGA 60.285 66.667 0.00 0.00 0.00 4.37
2222 2310 7.177392 CACCCCATTCTTAGAACAGAATCTTTT 59.823 37.037 0.00 0.00 40.86 2.27
2238 2326 4.481930 TCTTTTGTGTAAAGTGCCATCG 57.518 40.909 0.00 0.00 43.12 3.84
2252 2340 2.613595 TGCCATCGCAGTGAAATATGAC 59.386 45.455 0.00 0.00 41.12 3.06
2268 2356 0.599991 TGACAGTGTCACCGATGCAC 60.600 55.000 22.06 0.00 37.67 4.57
2286 2374 3.960755 TGCACTGCTGTACATATCCTAGT 59.039 43.478 1.98 0.00 0.00 2.57
2336 2424 5.455525 GTGACAACTGCTGTTATTTTGACAC 59.544 40.000 8.79 9.75 38.84 3.67
2373 2461 6.586463 CAGTGCGGTACCTATGATATAAGTTG 59.414 42.308 10.90 0.00 0.00 3.16
2450 2538 8.763601 AGTACAAAGAAGGCTGATCTTATACTT 58.236 33.333 14.34 0.00 36.51 2.24
2504 2592 3.865446 CATCACTGTAGATGTGAAGGCA 58.135 45.455 0.66 0.00 45.82 4.75
2524 2612 4.511454 GGCAAACTCAGCATCGAATGTATA 59.489 41.667 0.00 0.00 0.00 1.47
2526 2614 6.368791 GGCAAACTCAGCATCGAATGTATATA 59.631 38.462 0.00 0.00 0.00 0.86
2535 2623 8.839343 CAGCATCGAATGTATATATCTCTCTCT 58.161 37.037 0.00 0.00 0.00 3.10
3036 3128 9.869757 GGATTTACAAGTATTACTTTGCCAATT 57.130 29.630 6.34 0.00 36.03 2.32
3077 3169 3.797256 GTGACATCTTCATAGGTACGTGC 59.203 47.826 0.00 0.00 36.32 5.34
3092 3184 2.593257 ACGTGCTCTAAACGCTCTTAC 58.407 47.619 0.00 0.00 44.80 2.34
3095 3187 3.612860 CGTGCTCTAAACGCTCTTACATT 59.387 43.478 0.00 0.00 33.79 2.71
3126 3218 5.508153 CGGAGGGAGTAGATGTTAATCACTG 60.508 48.000 0.00 0.00 35.03 3.66
3302 3395 7.812191 TCTTGTATCATTGCAACCACAAATAAC 59.188 33.333 0.00 0.00 32.27 1.89
3339 3432 4.261572 GCAGTTGCTGTGTCCTTTTATTCA 60.262 41.667 0.00 0.00 38.21 2.57
3340 3433 5.455392 CAGTTGCTGTGTCCTTTTATTCAG 58.545 41.667 0.00 0.00 0.00 3.02
3341 3434 4.022849 AGTTGCTGTGTCCTTTTATTCAGC 60.023 41.667 7.83 7.83 45.39 4.26
3578 3779 4.523173 ACGAGGAACTAACATCAACTCTCA 59.477 41.667 0.00 0.00 41.55 3.27
3580 3781 5.336055 CGAGGAACTAACATCAACTCTCAGT 60.336 44.000 0.00 0.00 41.55 3.41
3581 3782 6.426646 AGGAACTAACATCAACTCTCAGTT 57.573 37.500 0.00 0.00 36.03 3.16
3582 3783 7.540474 AGGAACTAACATCAACTCTCAGTTA 57.460 36.000 0.00 0.00 33.72 2.24
3583 3784 7.379750 AGGAACTAACATCAACTCTCAGTTAC 58.620 38.462 0.00 0.00 33.72 2.50
3584 3785 7.233757 AGGAACTAACATCAACTCTCAGTTACT 59.766 37.037 0.00 0.00 33.72 2.24
3585 3786 7.329717 GGAACTAACATCAACTCTCAGTTACTG 59.670 40.741 5.94 5.94 36.03 2.74
3586 3787 6.159988 ACTAACATCAACTCTCAGTTACTGC 58.840 40.000 7.61 0.00 36.03 4.40
3587 3788 4.881019 ACATCAACTCTCAGTTACTGCT 57.119 40.909 7.61 0.00 36.03 4.24
3588 3789 5.220710 ACATCAACTCTCAGTTACTGCTT 57.779 39.130 7.61 0.00 36.03 3.91
3589 3790 5.615289 ACATCAACTCTCAGTTACTGCTTT 58.385 37.500 7.61 0.00 36.03 3.51
3590 3791 6.759272 ACATCAACTCTCAGTTACTGCTTTA 58.241 36.000 7.61 0.00 36.03 1.85
3591 3792 7.390027 ACATCAACTCTCAGTTACTGCTTTAT 58.610 34.615 7.61 0.00 36.03 1.40
3592 3793 7.547370 ACATCAACTCTCAGTTACTGCTTTATC 59.453 37.037 7.61 0.00 36.03 1.75
3593 3794 7.233389 TCAACTCTCAGTTACTGCTTTATCT 57.767 36.000 7.61 0.00 36.03 1.98
3594 3795 7.316640 TCAACTCTCAGTTACTGCTTTATCTC 58.683 38.462 7.61 0.00 36.03 2.75
3595 3796 6.215495 ACTCTCAGTTACTGCTTTATCTCC 57.785 41.667 7.61 0.00 0.00 3.71
3596 3797 5.955355 ACTCTCAGTTACTGCTTTATCTCCT 59.045 40.000 7.61 0.00 0.00 3.69
3597 3798 6.127479 ACTCTCAGTTACTGCTTTATCTCCTG 60.127 42.308 7.61 0.00 0.00 3.86
3598 3799 5.127845 TCTCAGTTACTGCTTTATCTCCTGG 59.872 44.000 7.61 0.00 0.00 4.45
3599 3800 5.023452 TCAGTTACTGCTTTATCTCCTGGA 58.977 41.667 7.61 0.00 0.00 3.86
3600 3801 5.483937 TCAGTTACTGCTTTATCTCCTGGAA 59.516 40.000 7.61 0.00 0.00 3.53
3601 3802 6.013725 TCAGTTACTGCTTTATCTCCTGGAAA 60.014 38.462 7.61 0.00 0.00 3.13
3602 3803 6.314896 CAGTTACTGCTTTATCTCCTGGAAAG 59.685 42.308 0.00 0.00 34.06 2.62
3605 3806 1.332065 GCTTTATCTCCTGGAAAGCGC 59.668 52.381 13.40 0.00 43.88 5.92
3606 3807 2.911484 CTTTATCTCCTGGAAAGCGCT 58.089 47.619 2.64 2.64 0.00 5.92
3607 3808 2.604046 TTATCTCCTGGAAAGCGCTC 57.396 50.000 12.06 0.00 0.00 5.03
3608 3809 1.781786 TATCTCCTGGAAAGCGCTCT 58.218 50.000 12.06 0.00 0.00 4.09
3609 3810 0.908198 ATCTCCTGGAAAGCGCTCTT 59.092 50.000 12.06 7.54 0.00 2.85
3610 3811 1.557099 TCTCCTGGAAAGCGCTCTTA 58.443 50.000 12.06 0.00 31.02 2.10
3611 3812 2.111384 TCTCCTGGAAAGCGCTCTTAT 58.889 47.619 12.06 0.00 31.02 1.73
3612 3813 2.501723 TCTCCTGGAAAGCGCTCTTATT 59.498 45.455 12.06 0.00 31.02 1.40
3613 3814 3.055094 TCTCCTGGAAAGCGCTCTTATTT 60.055 43.478 12.06 0.00 31.02 1.40
3614 3815 3.270877 TCCTGGAAAGCGCTCTTATTTC 58.729 45.455 12.06 10.62 33.20 2.17
3615 3816 3.009723 CCTGGAAAGCGCTCTTATTTCA 58.990 45.455 12.06 5.21 35.18 2.69
3616 3817 3.064545 CCTGGAAAGCGCTCTTATTTCAG 59.935 47.826 17.48 17.48 35.18 3.02
3617 3818 3.674997 TGGAAAGCGCTCTTATTTCAGT 58.325 40.909 12.06 0.00 35.18 3.41
3618 3819 4.072131 TGGAAAGCGCTCTTATTTCAGTT 58.928 39.130 12.06 0.00 35.18 3.16
3619 3820 4.154195 TGGAAAGCGCTCTTATTTCAGTTC 59.846 41.667 12.06 6.48 35.18 3.01
3620 3821 3.999229 AAGCGCTCTTATTTCAGTTCG 57.001 42.857 12.06 0.00 0.00 3.95
3621 3822 2.271800 AGCGCTCTTATTTCAGTTCGG 58.728 47.619 2.64 0.00 0.00 4.30
3622 3823 2.000447 GCGCTCTTATTTCAGTTCGGT 59.000 47.619 0.00 0.00 0.00 4.69
3623 3824 3.119245 AGCGCTCTTATTTCAGTTCGGTA 60.119 43.478 2.64 0.00 0.00 4.02
3624 3825 3.243177 GCGCTCTTATTTCAGTTCGGTAG 59.757 47.826 0.00 0.00 0.00 3.18
3625 3826 4.669318 CGCTCTTATTTCAGTTCGGTAGA 58.331 43.478 0.00 0.00 0.00 2.59
3626 3827 5.100259 CGCTCTTATTTCAGTTCGGTAGAA 58.900 41.667 0.00 0.00 0.00 2.10
3635 3836 2.412421 GTTCGGTAGAACGTGTGTCT 57.588 50.000 0.00 0.00 45.96 3.41
3636 3837 2.314122 GTTCGGTAGAACGTGTGTCTC 58.686 52.381 0.00 0.00 45.96 3.36
3637 3838 0.877071 TCGGTAGAACGTGTGTCTCC 59.123 55.000 0.00 0.00 34.94 3.71
3638 3839 0.594602 CGGTAGAACGTGTGTCTCCA 59.405 55.000 0.00 0.00 0.00 3.86
3639 3840 1.001048 CGGTAGAACGTGTGTCTCCAA 60.001 52.381 0.00 0.00 0.00 3.53
3640 3841 2.544277 CGGTAGAACGTGTGTCTCCAAA 60.544 50.000 0.00 0.00 0.00 3.28
3641 3842 3.460103 GGTAGAACGTGTGTCTCCAAAA 58.540 45.455 0.00 0.00 0.00 2.44
3642 3843 3.246936 GGTAGAACGTGTGTCTCCAAAAC 59.753 47.826 0.00 0.00 0.00 2.43
3643 3844 2.285977 AGAACGTGTGTCTCCAAAACC 58.714 47.619 0.00 0.00 0.00 3.27
3644 3845 1.332686 GAACGTGTGTCTCCAAAACCC 59.667 52.381 0.00 0.00 0.00 4.11
3645 3846 0.253610 ACGTGTGTCTCCAAAACCCA 59.746 50.000 0.00 0.00 0.00 4.51
3646 3847 1.340211 ACGTGTGTCTCCAAAACCCAA 60.340 47.619 0.00 0.00 0.00 4.12
3647 3848 1.953686 CGTGTGTCTCCAAAACCCAAT 59.046 47.619 0.00 0.00 0.00 3.16
3648 3849 2.287547 CGTGTGTCTCCAAAACCCAATG 60.288 50.000 0.00 0.00 0.00 2.82
3649 3850 2.693074 GTGTGTCTCCAAAACCCAATGT 59.307 45.455 0.00 0.00 0.00 2.71
3650 3851 2.955660 TGTGTCTCCAAAACCCAATGTC 59.044 45.455 0.00 0.00 0.00 3.06
3651 3852 2.955660 GTGTCTCCAAAACCCAATGTCA 59.044 45.455 0.00 0.00 0.00 3.58
3652 3853 3.573967 GTGTCTCCAAAACCCAATGTCAT 59.426 43.478 0.00 0.00 0.00 3.06
3653 3854 4.764823 GTGTCTCCAAAACCCAATGTCATA 59.235 41.667 0.00 0.00 0.00 2.15
3654 3855 5.009631 TGTCTCCAAAACCCAATGTCATAG 58.990 41.667 0.00 0.00 0.00 2.23
3655 3856 4.399303 GTCTCCAAAACCCAATGTCATAGG 59.601 45.833 1.11 1.11 0.00 2.57
3656 3857 4.044065 TCTCCAAAACCCAATGTCATAGGT 59.956 41.667 2.26 2.26 0.00 3.08
3657 3858 4.746466 TCCAAAACCCAATGTCATAGGTT 58.254 39.130 12.41 12.41 44.43 3.50
3658 3859 4.770010 TCCAAAACCCAATGTCATAGGTTC 59.230 41.667 16.66 0.00 41.72 3.62
3659 3860 4.526262 CCAAAACCCAATGTCATAGGTTCA 59.474 41.667 16.66 0.00 41.72 3.18
3660 3861 5.011533 CCAAAACCCAATGTCATAGGTTCAA 59.988 40.000 16.66 0.00 41.72 2.69
3661 3862 6.463614 CCAAAACCCAATGTCATAGGTTCAAA 60.464 38.462 16.66 0.00 41.72 2.69
3662 3863 6.933514 AAACCCAATGTCATAGGTTCAAAT 57.066 33.333 16.66 3.37 41.72 2.32
3663 3864 6.530019 AACCCAATGTCATAGGTTCAAATC 57.470 37.500 12.41 0.00 38.17 2.17
3664 3865 4.956075 ACCCAATGTCATAGGTTCAAATCC 59.044 41.667 2.26 0.00 0.00 3.01
3665 3866 5.203528 CCCAATGTCATAGGTTCAAATCCT 58.796 41.667 0.00 0.00 38.91 3.24
3666 3867 6.069088 ACCCAATGTCATAGGTTCAAATCCTA 60.069 38.462 2.26 0.00 41.08 2.94
3667 3868 6.263168 CCCAATGTCATAGGTTCAAATCCTAC 59.737 42.308 0.00 0.00 39.88 3.18
3668 3869 6.828273 CCAATGTCATAGGTTCAAATCCTACA 59.172 38.462 0.00 0.00 39.88 2.74
3669 3870 7.012704 CCAATGTCATAGGTTCAAATCCTACAG 59.987 40.741 0.00 0.00 39.88 2.74
3670 3871 6.867519 TGTCATAGGTTCAAATCCTACAGA 57.132 37.500 0.00 0.00 39.88 3.41
3671 3872 6.878317 TGTCATAGGTTCAAATCCTACAGAG 58.122 40.000 0.00 0.00 39.88 3.35
3672 3873 5.755861 GTCATAGGTTCAAATCCTACAGAGC 59.244 44.000 0.00 0.00 39.88 4.09
3673 3874 3.252974 AGGTTCAAATCCTACAGAGCG 57.747 47.619 0.00 0.00 33.04 5.03
3674 3875 2.567615 AGGTTCAAATCCTACAGAGCGT 59.432 45.455 0.00 0.00 33.04 5.07
3675 3876 2.673368 GGTTCAAATCCTACAGAGCGTG 59.327 50.000 0.00 0.00 0.00 5.34
3676 3877 3.585862 GTTCAAATCCTACAGAGCGTGA 58.414 45.455 0.00 0.00 0.00 4.35
3677 3878 4.184629 GTTCAAATCCTACAGAGCGTGAT 58.815 43.478 0.00 0.00 0.00 3.06
3678 3879 4.471904 TCAAATCCTACAGAGCGTGATT 57.528 40.909 0.00 0.00 0.00 2.57
3679 3880 4.832248 TCAAATCCTACAGAGCGTGATTT 58.168 39.130 0.00 0.00 0.00 2.17
3695 3896 0.243636 ATTTTGCACCGTTGGCTAGC 59.756 50.000 6.04 6.04 0.00 3.42
3848 4049 0.759346 ACGAGAACAGCCTCACCTTT 59.241 50.000 0.00 0.00 32.86 3.11
3951 4152 1.148310 CGAGTTCATGCCAAAGTCGT 58.852 50.000 12.39 0.00 42.05 4.34
4283 4489 2.672874 TCCGAACTTGATTCAGCATTCG 59.327 45.455 16.12 16.12 37.12 3.34
4292 4498 1.996292 TTCAGCATTCGTCTCTTCCG 58.004 50.000 0.00 0.00 0.00 4.30
4336 4546 2.224548 GCTGTGGTGGTCTACTTTCCTT 60.225 50.000 0.00 0.00 0.00 3.36
4354 4577 2.093869 CCTTGGTTGATGCCTGAATTGG 60.094 50.000 0.00 0.00 0.00 3.16
4369 4592 1.281925 ATTGGGTCCTCGATTGGGCT 61.282 55.000 0.00 0.00 0.00 5.19
4378 4601 6.270231 GGGTCCTCGATTGGGCTATAATATAT 59.730 42.308 0.00 0.00 0.00 0.86
4430 4653 0.814410 TGGCCACGTTGAAAAGCGTA 60.814 50.000 0.00 0.00 39.48 4.42
4446 4669 1.080093 GTAGTGCTAGTGTGCGGCA 60.080 57.895 0.00 0.00 35.36 5.69
4574 4798 1.811860 GTCTACGTGCGTGGGGTAT 59.188 57.895 7.55 0.00 0.00 2.73
4656 4880 4.790962 TCGCTCTACTCCGGCCGT 62.791 66.667 26.12 8.42 0.00 5.68
4705 4929 1.357258 GCTCGTACGTCGTCTCCTCA 61.357 60.000 16.05 0.00 40.80 3.86
4706 4930 1.073964 CTCGTACGTCGTCTCCTCAA 58.926 55.000 16.05 0.00 40.80 3.02
4709 4933 1.395954 CGTACGTCGTCTCCTCAATCA 59.604 52.381 7.22 0.00 34.52 2.57
4928 5166 1.131126 CGAGGTAGCAAAAGCACATGG 59.869 52.381 0.00 0.00 0.00 3.66
4929 5167 2.162681 GAGGTAGCAAAAGCACATGGT 58.837 47.619 0.00 0.00 0.00 3.55
4931 5169 2.162681 GGTAGCAAAAGCACATGGTCT 58.837 47.619 0.00 0.00 0.00 3.85
4934 5172 2.309613 AGCAAAAGCACATGGTCTTCA 58.690 42.857 0.00 0.00 0.00 3.02
4935 5173 2.694628 AGCAAAAGCACATGGTCTTCAA 59.305 40.909 0.00 0.00 0.00 2.69
4936 5174 3.322828 AGCAAAAGCACATGGTCTTCAAT 59.677 39.130 0.00 0.00 0.00 2.57
4937 5175 3.430895 GCAAAAGCACATGGTCTTCAATG 59.569 43.478 0.00 2.35 0.00 2.82
4938 5176 3.947910 AAAGCACATGGTCTTCAATGG 57.052 42.857 0.00 0.00 0.00 3.16
4939 5177 1.180029 AGCACATGGTCTTCAATGGC 58.820 50.000 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.444933 ACCTTCCACAACCATCAGGA 58.555 50.000 0.00 0.00 38.69 3.86
3 4 2.292828 AACCTTCCACAACCATCAGG 57.707 50.000 0.00 0.00 42.21 3.86
4 5 2.288395 GCAAACCTTCCACAACCATCAG 60.288 50.000 0.00 0.00 0.00 2.90
5 6 1.686052 GCAAACCTTCCACAACCATCA 59.314 47.619 0.00 0.00 0.00 3.07
6 7 1.335872 CGCAAACCTTCCACAACCATC 60.336 52.381 0.00 0.00 0.00 3.51
7 8 0.673437 CGCAAACCTTCCACAACCAT 59.327 50.000 0.00 0.00 0.00 3.55
8 9 1.388065 CCGCAAACCTTCCACAACCA 61.388 55.000 0.00 0.00 0.00 3.67
9 10 1.362355 CCGCAAACCTTCCACAACC 59.638 57.895 0.00 0.00 0.00 3.77
10 11 1.362355 CCCGCAAACCTTCCACAAC 59.638 57.895 0.00 0.00 0.00 3.32
11 12 1.076632 ACCCGCAAACCTTCCACAA 60.077 52.632 0.00 0.00 0.00 3.33
12 13 1.527380 GACCCGCAAACCTTCCACA 60.527 57.895 0.00 0.00 0.00 4.17
13 14 2.265904 GGACCCGCAAACCTTCCAC 61.266 63.158 0.00 0.00 0.00 4.02
14 15 2.114411 GGACCCGCAAACCTTCCA 59.886 61.111 0.00 0.00 0.00 3.53
15 16 3.053896 CGGACCCGCAAACCTTCC 61.054 66.667 0.00 0.00 0.00 3.46
38 39 4.402155 TGTTGGATTGGTTAATGGCATCTC 59.598 41.667 0.00 0.00 0.00 2.75
46 47 8.415950 TTCTAACACATGTTGGATTGGTTAAT 57.584 30.769 11.08 0.00 43.41 1.40
51 52 6.573664 TTCTTCTAACACATGTTGGATTGG 57.426 37.500 11.08 5.99 43.41 3.16
91 92 9.713740 CTGCTTTTTGATTGATCTTGTATAGTC 57.286 33.333 0.00 0.00 0.00 2.59
93 94 8.186163 TGCTGCTTTTTGATTGATCTTGTATAG 58.814 33.333 0.00 0.00 0.00 1.31
96 97 6.016024 AGTGCTGCTTTTTGATTGATCTTGTA 60.016 34.615 0.00 0.00 0.00 2.41
115 116 1.619654 TGACATCCCCAAAAGTGCTG 58.380 50.000 0.00 0.00 0.00 4.41
150 151 2.379972 AGAGGTACTTGATCGGGTCAG 58.620 52.381 0.00 0.00 41.55 3.51
185 186 2.851824 CACGTCTTTTGTGGACTTTTGC 59.148 45.455 0.00 0.00 33.69 3.68
186 187 4.091453 ACACGTCTTTTGTGGACTTTTG 57.909 40.909 0.00 0.00 41.64 2.44
204 206 5.359576 TCCAATCATGTGGCCTAAATAACAC 59.640 40.000 3.32 0.00 38.68 3.32
256 288 6.936900 CGATTATGTGGAGTCCTTTGGAATAT 59.063 38.462 11.33 0.00 31.38 1.28
280 312 4.505922 TGGCTTTTCAAAAAGTTGCATACG 59.494 37.500 14.78 0.00 45.48 3.06
293 325 8.478877 TCCTTAGTGTTTTTATTGGCTTTTCAA 58.521 29.630 0.00 0.00 0.00 2.69
294 326 7.923878 GTCCTTAGTGTTTTTATTGGCTTTTCA 59.076 33.333 0.00 0.00 0.00 2.69
300 332 6.079424 TGTGTCCTTAGTGTTTTTATTGGC 57.921 37.500 0.00 0.00 0.00 4.52
311 343 2.942376 TGCTTGTGTTGTGTCCTTAGTG 59.058 45.455 0.00 0.00 0.00 2.74
387 424 8.362639 AGTTTAAGTCATGTGCAATTTGAGATT 58.637 29.630 0.00 0.00 0.00 2.40
446 483 1.497309 AATTCCGGACCTGGGAGCAA 61.497 55.000 1.83 0.00 34.45 3.91
454 492 1.897802 ACGTCAACTAATTCCGGACCT 59.102 47.619 1.83 0.00 0.00 3.85
461 499 7.352739 ACATCTGTTTGAACGTCAACTAATTC 58.647 34.615 0.00 0.00 35.89 2.17
468 506 8.032451 TGATAGATACATCTGTTTGAACGTCAA 58.968 33.333 1.88 0.00 37.76 3.18
476 514 5.176406 CCGCAGTGATAGATACATCTGTTTG 59.824 44.000 1.88 0.00 37.76 2.93
477 515 5.163405 ACCGCAGTGATAGATACATCTGTTT 60.163 40.000 1.88 0.00 37.76 2.83
478 516 4.342378 ACCGCAGTGATAGATACATCTGTT 59.658 41.667 1.88 0.00 37.76 3.16
479 517 3.891977 ACCGCAGTGATAGATACATCTGT 59.108 43.478 1.88 0.00 37.76 3.41
480 518 4.480541 GACCGCAGTGATAGATACATCTG 58.519 47.826 1.88 0.00 37.76 2.90
481 519 3.189495 CGACCGCAGTGATAGATACATCT 59.811 47.826 0.00 0.00 40.86 2.90
482 520 3.493272 CGACCGCAGTGATAGATACATC 58.507 50.000 0.00 0.00 0.00 3.06
483 521 2.229062 CCGACCGCAGTGATAGATACAT 59.771 50.000 0.00 0.00 0.00 2.29
484 522 1.607148 CCGACCGCAGTGATAGATACA 59.393 52.381 0.00 0.00 0.00 2.29
485 523 1.878088 TCCGACCGCAGTGATAGATAC 59.122 52.381 0.00 0.00 0.00 2.24
492 530 1.289066 CTTCTTCCGACCGCAGTGA 59.711 57.895 0.00 0.00 0.00 3.41
501 539 3.713858 TTCGTTGTGTACTTCTTCCGA 57.286 42.857 0.00 0.00 0.00 4.55
507 545 5.398176 TGTGATGTTTCGTTGTGTACTTC 57.602 39.130 0.00 0.00 0.00 3.01
515 553 1.722751 GCTCGCTGTGATGTTTCGTTG 60.723 52.381 0.00 0.00 0.00 4.10
527 567 1.337823 ACCAGTATTTTCGCTCGCTGT 60.338 47.619 0.00 0.00 0.00 4.40
530 570 1.463444 ACAACCAGTATTTTCGCTCGC 59.537 47.619 0.00 0.00 0.00 5.03
544 584 8.240682 GCTCATATACACACAAAAATACAACCA 58.759 33.333 0.00 0.00 0.00 3.67
546 586 7.044966 GCGCTCATATACACACAAAAATACAAC 60.045 37.037 0.00 0.00 0.00 3.32
568 613 3.574396 ACATATATACAGGTCAGTGCGCT 59.426 43.478 9.73 0.00 0.00 5.92
570 615 6.844696 AAAACATATATACAGGTCAGTGCG 57.155 37.500 0.00 0.00 0.00 5.34
647 707 6.071784 TCACATTTTTCTTGCTATGCTCATGT 60.072 34.615 0.00 0.00 0.00 3.21
688 750 9.899226 GCATTACTAACACATCTTTCTCTTTTT 57.101 29.630 0.00 0.00 0.00 1.94
689 751 8.515414 GGCATTACTAACACATCTTTCTCTTTT 58.485 33.333 0.00 0.00 0.00 2.27
690 752 7.885399 AGGCATTACTAACACATCTTTCTCTTT 59.115 33.333 0.00 0.00 0.00 2.52
691 753 7.398024 AGGCATTACTAACACATCTTTCTCTT 58.602 34.615 0.00 0.00 0.00 2.85
692 754 6.951971 AGGCATTACTAACACATCTTTCTCT 58.048 36.000 0.00 0.00 0.00 3.10
693 755 7.617041 AAGGCATTACTAACACATCTTTCTC 57.383 36.000 0.00 0.00 0.00 2.87
694 756 8.409358 AAAAGGCATTACTAACACATCTTTCT 57.591 30.769 0.00 0.00 0.00 2.52
701 763 9.298250 TGGTTTATAAAAGGCATTACTAACACA 57.702 29.630 0.00 0.00 0.00 3.72
702 764 9.783256 CTGGTTTATAAAAGGCATTACTAACAC 57.217 33.333 0.00 0.00 0.00 3.32
703 765 9.742144 TCTGGTTTATAAAAGGCATTACTAACA 57.258 29.630 0.00 0.00 0.00 2.41
707 769 9.528489 TTCTTCTGGTTTATAAAAGGCATTACT 57.472 29.630 0.00 0.00 0.00 2.24
710 772 9.034800 TCATTCTTCTGGTTTATAAAAGGCATT 57.965 29.630 0.00 0.00 0.00 3.56
711 773 8.470002 GTCATTCTTCTGGTTTATAAAAGGCAT 58.530 33.333 0.00 0.00 0.00 4.40
712 774 7.450014 TGTCATTCTTCTGGTTTATAAAAGGCA 59.550 33.333 0.00 0.00 0.00 4.75
713 775 7.826690 TGTCATTCTTCTGGTTTATAAAAGGC 58.173 34.615 0.00 0.00 0.00 4.35
748 810 0.531974 GTTTCCACACGACTCCTGCA 60.532 55.000 0.00 0.00 0.00 4.41
777 839 6.273071 AGCTTAATGTTTTGTTTTTCTCGCT 58.727 32.000 0.00 0.00 0.00 4.93
883 945 4.144727 GGGAGCGAGGGGAGGAGA 62.145 72.222 0.00 0.00 0.00 3.71
885 947 4.144727 GAGGGAGCGAGGGGAGGA 62.145 72.222 0.00 0.00 0.00 3.71
893 958 4.144727 GAGGGAGGGAGGGAGCGA 62.145 72.222 0.00 0.00 0.00 4.93
895 960 3.767044 GAGGAGGGAGGGAGGGAGC 62.767 73.684 0.00 0.00 0.00 4.70
896 961 2.018086 AGAGGAGGGAGGGAGGGAG 61.018 68.421 0.00 0.00 0.00 4.30
897 962 2.015726 GAGAGGAGGGAGGGAGGGA 61.016 68.421 0.00 0.00 0.00 4.20
898 963 2.612251 GAGAGGAGGGAGGGAGGG 59.388 72.222 0.00 0.00 0.00 4.30
899 964 2.328589 TGGAGAGGAGGGAGGGAGG 61.329 68.421 0.00 0.00 0.00 4.30
904 969 1.687493 GGTGGTGGAGAGGAGGGAG 60.687 68.421 0.00 0.00 0.00 4.30
912 977 1.760875 GGCGGATAGGTGGTGGAGA 60.761 63.158 0.00 0.00 0.00 3.71
937 1002 2.466186 GGGTTTGTGGAGGGTGGGA 61.466 63.158 0.00 0.00 0.00 4.37
1096 1161 0.179070 GCTAGCTCGGGGGAAAGAAG 60.179 60.000 7.70 0.00 0.00 2.85
1102 1167 2.444140 GGAAGCTAGCTCGGGGGA 60.444 66.667 19.65 0.00 0.00 4.81
1105 1171 2.503382 GGGAGGAAGCTAGCTCGGG 61.503 68.421 19.65 0.00 0.00 5.14
1115 1181 1.406614 GCACATCTCACAGGGAGGAAG 60.407 57.143 0.00 0.00 44.19 3.46
1161 1239 1.567649 TCGGTCTGGTAGTCCCTGTAT 59.432 52.381 0.00 0.00 33.97 2.29
1263 1341 3.103911 CAACGACGCGACCTGACC 61.104 66.667 15.93 0.00 0.00 4.02
1283 1361 3.884581 TTTCTCGCACGACGGACCG 62.885 63.158 13.61 13.61 43.89 4.79
1284 1362 2.049802 TTTCTCGCACGACGGACC 60.050 61.111 0.00 0.00 43.89 4.46
1285 1363 1.066114 CTCTTTCTCGCACGACGGAC 61.066 60.000 0.00 0.00 43.89 4.79
1286 1364 1.209383 CTCTTTCTCGCACGACGGA 59.791 57.895 0.00 0.00 43.89 4.69
1287 1365 1.066114 GTCTCTTTCTCGCACGACGG 61.066 60.000 0.00 0.00 43.89 4.79
1288 1366 1.389204 CGTCTCTTTCTCGCACGACG 61.389 60.000 0.00 0.00 45.62 5.12
1289 1367 2.340999 CGTCTCTTTCTCGCACGAC 58.659 57.895 0.00 0.00 32.08 4.34
1290 1368 4.841029 CGTCTCTTTCTCGCACGA 57.159 55.556 0.00 0.00 32.08 4.35
1309 1387 2.109128 TCTCTAGAGCCCGGATCAGAAT 59.891 50.000 15.35 0.00 0.00 2.40
1310 1388 1.495148 TCTCTAGAGCCCGGATCAGAA 59.505 52.381 15.35 0.00 0.00 3.02
1336 1415 2.263077 CGAGAACAGATCAGGAAACCG 58.737 52.381 0.00 0.00 0.00 4.44
1354 1433 4.932799 ACATGGAACGACAATAAATCACGA 59.067 37.500 0.00 0.00 0.00 4.35
1357 1436 6.038161 GGATCACATGGAACGACAATAAATCA 59.962 38.462 0.00 0.00 0.00 2.57
1359 1438 5.007626 CGGATCACATGGAACGACAATAAAT 59.992 40.000 0.00 0.00 33.41 1.40
1374 1453 3.646946 CGATCAATCACTCGGATCACAT 58.353 45.455 0.00 0.00 37.81 3.21
1401 1480 2.036733 CCCAGAAGTCGTCAAACCACTA 59.963 50.000 0.00 0.00 0.00 2.74
1416 1495 2.842188 TACCCTCGCGCTACCCAGAA 62.842 60.000 5.56 0.00 0.00 3.02
1435 1520 6.537453 AAGCAGCAATATACCTATCTCGAT 57.463 37.500 0.00 0.00 0.00 3.59
1437 1522 6.699204 CCATAAGCAGCAATATACCTATCTCG 59.301 42.308 0.00 0.00 0.00 4.04
1438 1523 6.481644 GCCATAAGCAGCAATATACCTATCTC 59.518 42.308 0.00 0.00 42.97 2.75
1497 1583 9.753674 ACCAACAGGAATAAATTCTTCTATCAA 57.246 29.630 2.91 0.00 37.00 2.57
1567 1653 3.497405 CCCGATGAATTCAGGACCATGAT 60.497 47.826 14.54 0.00 0.00 2.45
1657 1743 5.634118 ACATGCAATACTTAGGGCACATAT 58.366 37.500 0.00 0.00 39.34 1.78
1678 1764 6.681729 AACCAATGACTTAGGACTTAGACA 57.318 37.500 0.00 0.00 0.00 3.41
1682 1768 7.385752 CGTGTAAAACCAATGACTTAGGACTTA 59.614 37.037 0.00 0.00 0.00 2.24
1699 1785 4.533222 CCACACAAATCTCCGTGTAAAAC 58.467 43.478 0.00 0.00 44.34 2.43
1705 1791 2.465860 TACCCACACAAATCTCCGTG 57.534 50.000 0.00 0.00 39.10 4.94
1748 1834 8.454106 AGTTATTGCACATCTAAATGACTCAAC 58.546 33.333 0.00 0.00 36.67 3.18
1814 1900 0.622665 ATTGTTCTCCAGGCTCCAGG 59.377 55.000 0.00 0.00 0.00 4.45
1911 1997 1.497286 ACCTACAGCCCCAGAAAACAA 59.503 47.619 0.00 0.00 0.00 2.83
1935 2021 8.408043 TCCATGATTAACAATGACAGAAAAGT 57.592 30.769 0.00 0.00 0.00 2.66
2106 2194 3.622163 CAGTTGCATCAGACTCAAGATCC 59.378 47.826 0.00 0.00 0.00 3.36
2222 2310 1.155889 CTGCGATGGCACTTTACACA 58.844 50.000 0.00 0.00 46.21 3.72
2238 2326 4.142816 GGTGACACTGTCATATTTCACTGC 60.143 45.833 14.95 0.00 44.63 4.40
2252 2340 2.156542 CAGTGCATCGGTGACACTG 58.843 57.895 27.04 27.04 45.14 3.66
2268 2356 6.264292 AGAGAACACTAGGATATGTACAGCAG 59.736 42.308 0.33 0.00 0.00 4.24
2336 2424 1.290203 CCGCACTGTTACCATAGCAG 58.710 55.000 0.00 0.00 41.98 4.24
2349 2437 6.267014 ACAACTTATATCATAGGTACCGCACT 59.733 38.462 6.18 0.00 0.00 4.40
2450 2538 3.776417 TGATCTGTGATTGGATCTCACCA 59.224 43.478 10.19 0.00 41.87 4.17
2504 2592 9.579768 GAGATATATACATTCGATGCTGAGTTT 57.420 33.333 0.00 0.00 0.00 2.66
2560 2649 5.758296 TCAGTACTAAAAGCTGGAAACACAG 59.242 40.000 0.00 0.00 41.41 3.66
2853 2942 0.388134 GAGCACTAGTTCCGAACGCA 60.388 55.000 5.62 0.00 36.23 5.24
3036 3128 7.994425 TGTCACAAGGATCAAATAAGCTAAA 57.006 32.000 0.00 0.00 0.00 1.85
3077 3169 8.102716 CGTAAAGAAATGTAAGAGCGTTTAGAG 58.897 37.037 0.00 0.00 0.00 2.43
3092 3184 5.593679 TCTACTCCCTCCGTAAAGAAATG 57.406 43.478 0.00 0.00 0.00 2.32
3095 3187 4.607239 ACATCTACTCCCTCCGTAAAGAA 58.393 43.478 0.00 0.00 0.00 2.52
3539 3740 2.610433 CTCGTTAACTGCATCAGCTCA 58.390 47.619 3.71 0.00 42.74 4.26
3578 3779 6.374417 TTTCCAGGAGATAAAGCAGTAACT 57.626 37.500 0.00 0.00 0.00 2.24
3586 3787 2.869192 GAGCGCTTTCCAGGAGATAAAG 59.131 50.000 13.26 0.00 34.14 1.85
3587 3788 2.501723 AGAGCGCTTTCCAGGAGATAAA 59.498 45.455 13.26 0.00 0.00 1.40
3588 3789 2.111384 AGAGCGCTTTCCAGGAGATAA 58.889 47.619 13.26 0.00 0.00 1.75
3589 3790 1.781786 AGAGCGCTTTCCAGGAGATA 58.218 50.000 13.26 0.00 0.00 1.98
3590 3791 0.908198 AAGAGCGCTTTCCAGGAGAT 59.092 50.000 13.26 0.00 0.00 2.75
3591 3792 1.557099 TAAGAGCGCTTTCCAGGAGA 58.443 50.000 13.26 0.00 35.56 3.71
3592 3793 2.611225 ATAAGAGCGCTTTCCAGGAG 57.389 50.000 13.26 0.00 35.56 3.69
3593 3794 3.270877 GAAATAAGAGCGCTTTCCAGGA 58.729 45.455 13.26 0.00 35.56 3.86
3594 3795 3.009723 TGAAATAAGAGCGCTTTCCAGG 58.990 45.455 13.26 0.00 35.56 4.45
3595 3796 3.686726 ACTGAAATAAGAGCGCTTTCCAG 59.313 43.478 13.26 7.93 35.56 3.86
3596 3797 3.674997 ACTGAAATAAGAGCGCTTTCCA 58.325 40.909 13.26 0.00 35.56 3.53
3597 3798 4.653004 GAACTGAAATAAGAGCGCTTTCC 58.347 43.478 13.26 0.00 35.56 3.13
3598 3799 4.327024 CGAACTGAAATAAGAGCGCTTTC 58.673 43.478 13.26 11.89 35.56 2.62
3599 3800 3.125316 CCGAACTGAAATAAGAGCGCTTT 59.875 43.478 13.26 1.42 35.56 3.51
3600 3801 2.673368 CCGAACTGAAATAAGAGCGCTT 59.327 45.455 13.26 8.09 38.15 4.68
3601 3802 2.271800 CCGAACTGAAATAAGAGCGCT 58.728 47.619 11.27 11.27 0.00 5.92
3602 3803 2.000447 ACCGAACTGAAATAAGAGCGC 59.000 47.619 0.00 0.00 0.00 5.92
3603 3804 4.669318 TCTACCGAACTGAAATAAGAGCG 58.331 43.478 0.00 0.00 0.00 5.03
3604 3805 5.004535 CGTTCTACCGAACTGAAATAAGAGC 59.995 44.000 4.02 0.00 45.78 4.09
3605 3806 6.033619 CACGTTCTACCGAACTGAAATAAGAG 59.966 42.308 4.02 0.00 45.78 2.85
3606 3807 5.860182 CACGTTCTACCGAACTGAAATAAGA 59.140 40.000 4.02 0.00 45.78 2.10
3607 3808 5.632347 ACACGTTCTACCGAACTGAAATAAG 59.368 40.000 4.02 0.00 45.78 1.73
3608 3809 5.403166 CACACGTTCTACCGAACTGAAATAA 59.597 40.000 4.02 0.00 45.78 1.40
3609 3810 4.919168 CACACGTTCTACCGAACTGAAATA 59.081 41.667 4.02 0.00 45.78 1.40
3610 3811 3.739300 CACACGTTCTACCGAACTGAAAT 59.261 43.478 4.02 0.00 45.78 2.17
3611 3812 3.117794 CACACGTTCTACCGAACTGAAA 58.882 45.455 4.02 0.00 45.78 2.69
3612 3813 2.099592 ACACACGTTCTACCGAACTGAA 59.900 45.455 4.02 0.00 45.78 3.02
3613 3814 1.677576 ACACACGTTCTACCGAACTGA 59.322 47.619 4.02 0.00 45.78 3.41
3614 3815 2.049228 GACACACGTTCTACCGAACTG 58.951 52.381 4.02 4.22 45.78 3.16
3615 3816 1.952296 AGACACACGTTCTACCGAACT 59.048 47.619 4.02 0.00 45.78 3.01
3616 3817 2.314122 GAGACACACGTTCTACCGAAC 58.686 52.381 0.00 0.00 44.77 3.95
3617 3818 1.267806 GGAGACACACGTTCTACCGAA 59.732 52.381 0.00 0.00 0.00 4.30
3618 3819 0.877071 GGAGACACACGTTCTACCGA 59.123 55.000 0.00 0.00 0.00 4.69
3619 3820 0.594602 TGGAGACACACGTTCTACCG 59.405 55.000 0.00 0.00 33.40 4.02
3620 3821 2.806608 TTGGAGACACACGTTCTACC 57.193 50.000 0.00 0.00 42.67 3.18
3621 3822 3.246936 GGTTTTGGAGACACACGTTCTAC 59.753 47.826 0.00 0.00 42.67 2.59
3622 3823 3.460103 GGTTTTGGAGACACACGTTCTA 58.540 45.455 0.00 0.00 42.67 2.10
3623 3824 2.285977 GGTTTTGGAGACACACGTTCT 58.714 47.619 0.00 0.00 42.67 3.01
3624 3825 1.332686 GGGTTTTGGAGACACACGTTC 59.667 52.381 0.00 0.00 42.67 3.95
3625 3826 1.340211 TGGGTTTTGGAGACACACGTT 60.340 47.619 0.00 0.00 42.67 3.99
3626 3827 0.253610 TGGGTTTTGGAGACACACGT 59.746 50.000 0.00 0.00 42.67 4.49
3627 3828 1.384525 TTGGGTTTTGGAGACACACG 58.615 50.000 0.00 0.00 42.67 4.49
3628 3829 2.693074 ACATTGGGTTTTGGAGACACAC 59.307 45.455 0.00 0.00 42.67 3.82
3629 3830 2.955660 GACATTGGGTTTTGGAGACACA 59.044 45.455 0.00 0.00 42.67 3.72
3630 3831 2.955660 TGACATTGGGTTTTGGAGACAC 59.044 45.455 0.00 0.00 42.67 3.67
3631 3832 3.304911 TGACATTGGGTTTTGGAGACA 57.695 42.857 0.00 0.00 39.83 3.41
3632 3833 4.399303 CCTATGACATTGGGTTTTGGAGAC 59.601 45.833 7.94 0.00 0.00 3.36
3633 3834 4.044065 ACCTATGACATTGGGTTTTGGAGA 59.956 41.667 18.43 0.00 0.00 3.71
3634 3835 4.344104 ACCTATGACATTGGGTTTTGGAG 58.656 43.478 18.43 0.00 0.00 3.86
3635 3836 4.396357 ACCTATGACATTGGGTTTTGGA 57.604 40.909 18.43 0.00 0.00 3.53
3636 3837 4.526262 TGAACCTATGACATTGGGTTTTGG 59.474 41.667 18.43 0.00 41.44 3.28
3637 3838 5.720371 TGAACCTATGACATTGGGTTTTG 57.280 39.130 18.43 0.00 41.44 2.44
3638 3839 6.739331 TTTGAACCTATGACATTGGGTTTT 57.261 33.333 18.43 5.59 41.44 2.43
3639 3840 6.070824 GGATTTGAACCTATGACATTGGGTTT 60.071 38.462 18.43 6.24 41.44 3.27
3640 3841 5.422012 GGATTTGAACCTATGACATTGGGTT 59.578 40.000 18.43 18.79 43.66 4.11
3641 3842 4.956075 GGATTTGAACCTATGACATTGGGT 59.044 41.667 18.43 13.11 0.00 4.51
3642 3843 5.203528 AGGATTTGAACCTATGACATTGGG 58.796 41.667 18.43 11.91 35.84 4.12
3643 3844 6.828273 TGTAGGATTTGAACCTATGACATTGG 59.172 38.462 13.60 13.60 41.25 3.16
3644 3845 7.770433 TCTGTAGGATTTGAACCTATGACATTG 59.230 37.037 0.00 0.00 41.25 2.82
3645 3846 7.861629 TCTGTAGGATTTGAACCTATGACATT 58.138 34.615 0.00 0.00 41.25 2.71
3646 3847 7.437713 TCTGTAGGATTTGAACCTATGACAT 57.562 36.000 0.00 0.00 41.25 3.06
3647 3848 6.630413 GCTCTGTAGGATTTGAACCTATGACA 60.630 42.308 0.00 0.00 41.25 3.58
3648 3849 5.755861 GCTCTGTAGGATTTGAACCTATGAC 59.244 44.000 0.00 0.00 41.25 3.06
3649 3850 5.451937 CGCTCTGTAGGATTTGAACCTATGA 60.452 44.000 0.00 0.00 41.25 2.15
3650 3851 4.747108 CGCTCTGTAGGATTTGAACCTATG 59.253 45.833 0.00 0.00 41.25 2.23
3651 3852 4.406003 ACGCTCTGTAGGATTTGAACCTAT 59.594 41.667 0.00 0.00 41.25 2.57
3652 3853 3.767673 ACGCTCTGTAGGATTTGAACCTA 59.232 43.478 0.00 0.00 38.76 3.08
3653 3854 2.567615 ACGCTCTGTAGGATTTGAACCT 59.432 45.455 0.00 0.00 41.05 3.50
3654 3855 2.673368 CACGCTCTGTAGGATTTGAACC 59.327 50.000 0.00 0.00 0.00 3.62
3655 3856 3.585862 TCACGCTCTGTAGGATTTGAAC 58.414 45.455 0.00 0.00 0.00 3.18
3656 3857 3.953712 TCACGCTCTGTAGGATTTGAA 57.046 42.857 0.00 0.00 0.00 2.69
3657 3858 4.471904 AATCACGCTCTGTAGGATTTGA 57.528 40.909 0.00 0.00 0.00 2.69
3658 3859 5.327091 CAAAATCACGCTCTGTAGGATTTG 58.673 41.667 0.00 0.00 37.99 2.32
3659 3860 4.142600 GCAAAATCACGCTCTGTAGGATTT 60.143 41.667 0.00 0.00 39.21 2.17
3660 3861 3.375299 GCAAAATCACGCTCTGTAGGATT 59.625 43.478 0.00 0.00 0.00 3.01
3661 3862 2.939103 GCAAAATCACGCTCTGTAGGAT 59.061 45.455 0.00 0.00 0.00 3.24
3662 3863 2.289382 TGCAAAATCACGCTCTGTAGGA 60.289 45.455 0.00 0.00 0.00 2.94
3663 3864 2.076100 TGCAAAATCACGCTCTGTAGG 58.924 47.619 0.00 0.00 0.00 3.18
3664 3865 2.159653 GGTGCAAAATCACGCTCTGTAG 60.160 50.000 0.00 0.00 37.83 2.74
3665 3866 1.804151 GGTGCAAAATCACGCTCTGTA 59.196 47.619 0.00 0.00 37.83 2.74
3666 3867 0.593128 GGTGCAAAATCACGCTCTGT 59.407 50.000 0.00 0.00 37.83 3.41
3667 3868 0.453282 CGGTGCAAAATCACGCTCTG 60.453 55.000 0.00 0.00 37.83 3.35
3668 3869 0.884704 ACGGTGCAAAATCACGCTCT 60.885 50.000 0.00 0.00 37.83 4.09
3669 3870 0.040425 AACGGTGCAAAATCACGCTC 60.040 50.000 0.00 0.00 37.83 5.03
3670 3871 0.317770 CAACGGTGCAAAATCACGCT 60.318 50.000 0.00 0.00 37.83 5.07
3671 3872 1.274798 CCAACGGTGCAAAATCACGC 61.275 55.000 0.00 0.00 37.83 5.34
3672 3873 1.274798 GCCAACGGTGCAAAATCACG 61.275 55.000 0.00 0.00 37.83 4.35
3673 3874 0.031994 AGCCAACGGTGCAAAATCAC 59.968 50.000 0.00 0.00 36.28 3.06
3674 3875 1.539388 CTAGCCAACGGTGCAAAATCA 59.461 47.619 0.00 0.00 0.00 2.57
3675 3876 1.732405 GCTAGCCAACGGTGCAAAATC 60.732 52.381 2.29 0.00 0.00 2.17
3676 3877 0.243636 GCTAGCCAACGGTGCAAAAT 59.756 50.000 2.29 0.00 0.00 1.82
3677 3878 0.821711 AGCTAGCCAACGGTGCAAAA 60.822 50.000 12.13 0.00 0.00 2.44
3678 3879 1.228124 AGCTAGCCAACGGTGCAAA 60.228 52.632 12.13 0.00 0.00 3.68
3679 3880 1.671054 GAGCTAGCCAACGGTGCAA 60.671 57.895 12.13 0.00 0.00 4.08
3695 3896 6.494893 TTCAATTCAAATCGTTAGTGGGAG 57.505 37.500 0.00 0.00 0.00 4.30
3727 3928 1.843851 TGTCTCCCTTGTTGTTCCTGT 59.156 47.619 0.00 0.00 0.00 4.00
3848 4049 2.613696 AGGGTATGCTGGGTGCCA 60.614 61.111 0.00 0.00 42.00 4.92
3951 4152 2.741985 CGCCGAGATGGTGCACAA 60.742 61.111 20.43 8.12 42.37 3.33
4054 4255 4.405358 CCCTGACTGAGAGCTTTAGAGAAT 59.595 45.833 0.00 0.00 0.00 2.40
4056 4257 3.360867 CCCTGACTGAGAGCTTTAGAGA 58.639 50.000 0.00 0.00 0.00 3.10
4057 4258 2.430332 CCCCTGACTGAGAGCTTTAGAG 59.570 54.545 0.00 0.00 0.00 2.43
4058 4259 2.225394 ACCCCTGACTGAGAGCTTTAGA 60.225 50.000 0.00 0.00 0.00 2.10
4059 4260 2.093764 CACCCCTGACTGAGAGCTTTAG 60.094 54.545 0.00 0.00 0.00 1.85
4060 4261 1.902508 CACCCCTGACTGAGAGCTTTA 59.097 52.381 0.00 0.00 0.00 1.85
4061 4262 0.689623 CACCCCTGACTGAGAGCTTT 59.310 55.000 0.00 0.00 0.00 3.51
4264 4466 3.369147 AGACGAATGCTGAATCAAGTTCG 59.631 43.478 16.96 16.96 42.73 3.95
4309 4517 2.172717 AGTAGACCACCACAGCAAGTTT 59.827 45.455 0.00 0.00 0.00 2.66
4336 4546 1.203162 ACCCAATTCAGGCATCAACCA 60.203 47.619 0.00 0.00 0.00 3.67
4354 4577 3.983044 ATTATAGCCCAATCGAGGACC 57.017 47.619 0.00 0.00 0.00 4.46
4378 4601 3.684305 CGTTCATTGCAGTTCCAGATGTA 59.316 43.478 0.00 0.00 0.00 2.29
4385 4608 0.109597 CAGCCGTTCATTGCAGTTCC 60.110 55.000 0.00 0.00 0.00 3.62
4393 4616 1.238439 CAACCAGTCAGCCGTTCATT 58.762 50.000 0.00 0.00 0.00 2.57
4430 4653 1.892819 ATCTGCCGCACACTAGCACT 61.893 55.000 0.00 0.00 32.06 4.40
4435 4658 2.494445 CCGATCTGCCGCACACTA 59.506 61.111 0.00 0.00 0.00 2.74
4446 4669 4.457496 CACGTGGCCAGCCGATCT 62.457 66.667 21.34 0.00 39.42 2.75
4466 4689 3.432252 CACAAACGTAAATCTCCGCTTCT 59.568 43.478 0.00 0.00 0.00 2.85
4574 4798 4.056092 TCTCGAGCGAGACACTATCTAA 57.944 45.455 17.70 0.00 45.26 2.10
4621 4845 0.662374 GACGACGACGGTGACATTGT 60.662 55.000 12.58 0.00 44.46 2.71
4656 4880 4.144727 GGGCGGGAGGAGAGGAGA 62.145 72.222 0.00 0.00 0.00 3.71
4705 4929 0.107508 CACCTGCTCCCATCGTGATT 60.108 55.000 0.00 0.00 0.00 2.57
4706 4930 1.524002 CACCTGCTCCCATCGTGAT 59.476 57.895 0.00 0.00 0.00 3.06
4709 4933 3.402681 CCCACCTGCTCCCATCGT 61.403 66.667 0.00 0.00 0.00 3.73
4928 5166 0.179215 CGCAGTTCGCCATTGAAGAC 60.179 55.000 0.00 0.00 37.30 3.01
4929 5167 0.602638 ACGCAGTTCGCCATTGAAGA 60.603 50.000 0.00 0.00 37.78 2.87
4931 5169 4.057224 ACGCAGTTCGCCATTGAA 57.943 50.000 0.00 0.00 37.78 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.