AutoCloner

Multiple sequence alignment - TraesCS5B01G188400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G188400	chr5B	100.000	3559	0	0	1	3559	340566715	340570273	0.000000e+00	6573.0
1	TraesCS5B01G188400	chr5B	95.863	1692	51	14	770	2456	339977630	339979307	0.000000e+00	2719.0
2	TraesCS5B01G188400	chr5B	97.388	1455	28	7	1003	2456	340134711	340136156	0.000000e+00	2468.0
3	TraesCS5B01G188400	chr5B	97.388	1455	28	7	1003	2456	340324784	340326229	0.000000e+00	2468.0
4	TraesCS5B01G188400	chr5B	94.523	1479	62	9	985	2456	343952619	343951153	0.000000e+00	2265.0
5	TraesCS5B01G188400	chr5B	90.283	1482	102	14	1003	2456	344240855	344239388	0.000000e+00	1901.0
6	TraesCS5B01G188400	chr5B	100.000	942	0	0	1	942	340133668	340134609	0.000000e+00	1740.0
7	TraesCS5B01G188400	chr5B	100.000	942	0	0	1	942	340323741	340324682	0.000000e+00	1740.0
8	TraesCS5B01G188400	chr5B	92.183	985	62	5	1031	2003	340609940	340610921	0.000000e+00	1378.0
9	TraesCS5B01G188400	chr5B	86.150	426	53	4	2716	3140	340157085	340157505	4.190000e-124	455.0
10	TraesCS5B01G188400	chr5B	79.098	488	62	20	3087	3556	340612433	340612898	2.080000e-77	300.0
11	TraesCS5B01G188400	chr5B	86.145	166	9	7	825	990	344241073	344240922	2.200000e-37	167.0
12	TraesCS5B01G188400	chr5B	92.593	108	3	1	878	985	343952766	343952664	2.210000e-32	150.0
13	TraesCS5B01G188400	chr5B	85.417	144	18	3	476	618	31156757	31156898	2.860000e-31	147.0
14	TraesCS5B01G188400	chr5D	87.810	2625	184	58	1031	3559	299388951	299391535	0.000000e+00	2950.0
15	TraesCS5B01G188400	chr5D	83.777	2256	265	42	986	3205	299068661	299070851	0.000000e+00	2045.0
16	TraesCS5B01G188400	chr5D	91.678	1466	107	3	1003	2456	300323182	300321720	0.000000e+00	2017.0
17	TraesCS5B01G188400	chr5D	90.610	1427	97	14	1057	2456	300955764	300957180	0.000000e+00	1858.0
18	TraesCS5B01G188400	chr5D	89.831	1475	95	23	1003	2456	300147288	300145848	0.000000e+00	1842.0
19	TraesCS5B01G188400	chr5D	81.151	886	137	25	2265	3133	299064086	299064958	0.000000e+00	684.0
20	TraesCS5B01G188400	chr5D	93.379	438	22	2	982	1412	299004512	299004949	3.000000e-180	641.0
21	TraesCS5B01G188400	chr5D	95.113	266	8	1	176	436	299388321	299388586	7.110000e-112	414.0
22	TraesCS5B01G188400	chr5D	94.884	215	5	2	773	987	299388651	299388859	7.360000e-87	331.0
23	TraesCS5B01G188400	chr5D	93.143	175	2	6	1	175	299388109	299388273	7.630000e-62	248.0
24	TraesCS5B01G188400	chr5D	87.574	169	13	2	822	987	300955479	300955642	4.690000e-44	189.0
25	TraesCS5B01G188400	chr5D	81.579	228	26	9	770	987	299004263	299004484	1.310000e-39	174.0
26	TraesCS5B01G188400	chr5A	88.963	1504	110	18	982	2456	396415786	396417262	0.000000e+00	1807.0
27	TraesCS5B01G188400	chr5A	83.350	985	114	28	2601	3559	396430272	396431232	0.000000e+00	865.0
28	TraesCS5B01G188400	chr5A	79.937	952	157	23	2208	3133	398048534	398047591	0.000000e+00	669.0
29	TraesCS5B01G188400	chr5A	87.080	387	40	3	2080	2456	396490700	396491086	2.540000e-116	429.0
30	TraesCS5B01G188400	chr5A	87.425	167	13	2	827	990	398051323	398051162	6.070000e-43	185.0
31	TraesCS5B01G188400	chr5A	84.298	121	13	4	867	987	396415632	396415746	2.900000e-21	113.0
32	TraesCS5B01G188400	chr5A	98.077	52	0	1	714	764	514843250	514843301	4.890000e-14	89.8
33	TraesCS5B01G188400	chr5A	96.970	33	0	1	770	802	398693067	398693036	2.000000e-03	54.7
34	TraesCS5B01G188400	chr3A	79.452	803	93	35	2354	3120	456906466	456907232	1.470000e-138	503.0
35	TraesCS5B01G188400	chr3A	93.902	82	5	0	319	400	723502699	723502780	1.340000e-24	124.0
36	TraesCS5B01G188400	chrUn	96.000	175	7	0	1	175	86338277	86338103	5.820000e-73	285.0
37	TraesCS5B01G188400	chrUn	96.000	175	7	0	1	175	86365664	86365490	5.820000e-73	285.0
38	TraesCS5B01G188400	chrUn	80.620	258	33	11	361	618	208388904	208389144	2.180000e-42	183.0
39	TraesCS5B01G188400	chrUn	89.908	109	5	4	176	283	86338053	86337950	6.200000e-28	135.0
40	TraesCS5B01G188400	chrUn	88.073	109	7	4	176	283	86365450	86365347	1.340000e-24	124.0
41	TraesCS5B01G188400	chr7A	96.000	175	7	0	1	175	458711021	458710847	5.820000e-73	285.0
42	TraesCS5B01G188400	chr7A	90.857	175	16	0	1	175	458707895	458707721	5.940000e-58	235.0
43	TraesCS5B01G188400	chr7A	88.889	108	8	3	176	283	458710797	458710694	2.880000e-26	130.0
44	TraesCS5B01G188400	chr7D	95.429	175	8	0	1	175	400469304	400469130	2.710000e-71	279.0
45	TraesCS5B01G188400	chr2B	83.486	218	30	5	401	618	70871665	70871876	7.790000e-47	198.0
46	TraesCS5B01G188400	chr2B	80.620	258	33	11	361	618	130140392	130140152	2.180000e-42	183.0
47	TraesCS5B01G188400	chr4A	80.620	258	33	11	361	618	677475473	677475713	2.180000e-42	183.0
48	TraesCS5B01G188400	chr3B	82.110	218	33	5	401	618	345092285	345092496	7.850000e-42	182.0
49	TraesCS5B01G188400	chr1B	86.154	130	17	1	489	618	544765596	544765468	4.790000e-29	139.0
50	TraesCS5B01G188400	chr6A	89.535	86	5	3	609	692	150398708	150398791	4.860000e-19	106.0
51	TraesCS5B01G188400	chr1D	85.714	70	4	5	602	666	385128828	385128760	6.380000e-08	69.4
52	TraesCS5B01G188400	chr1A	85.915	71	2	7	602	666	485228202	485228134	6.380000e-08	69.4
53	TraesCS5B01G188400	chr2D	80.612	98	5	11	576	666	106285594	106285504	2.970000e-06	63.9
54	TraesCS5B01G188400	chr6D	83.333	72	2	8	602	666	167265008	167265076	1.380000e-04	58.4
55	TraesCS5B01G188400	chr4D	83.333	72	2	8	602	666	440254594	440254662	1.380000e-04	58.4
56	TraesCS5B01G188400	chr2A	85.484	62	0	7	612	666	27960205	27960264	4.960000e-04	56.5

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G188400	chr5B	340566715	340570273	3558	False	6573.000000	6573	100.000000	1	3559	1	chr5B.!!$F4	3558
1	TraesCS5B01G188400	chr5B	339977630	339979307	1677	False	2719.000000	2719	95.863000	770	2456	1	chr5B.!!$F2	1686
2	TraesCS5B01G188400	chr5B	340133668	340136156	2488	False	2104.000000	2468	98.694000	1	2456	2	chr5B.!!$F5	2455
3	TraesCS5B01G188400	chr5B	340323741	340326229	2488	False	2104.000000	2468	98.694000	1	2456	2	chr5B.!!$F6	2455
4	TraesCS5B01G188400	chr5B	343951153	343952766	1613	True	1207.500000	2265	93.558000	878	2456	2	chr5B.!!$R1	1578
5	TraesCS5B01G188400	chr5B	344239388	344241073	1685	True	1034.000000	1901	88.214000	825	2456	2	chr5B.!!$R2	1631
6	TraesCS5B01G188400	chr5B	340609940	340612898	2958	False	839.000000	1378	85.640500	1031	3556	2	chr5B.!!$F7	2525
7	TraesCS5B01G188400	chr5D	300321720	300323182	1462	True	2017.000000	2017	91.678000	1003	2456	1	chr5D.!!$R2	1453
8	TraesCS5B01G188400	chr5D	300145848	300147288	1440	True	1842.000000	1842	89.831000	1003	2456	1	chr5D.!!$R1	1453
9	TraesCS5B01G188400	chr5D	299064086	299070851	6765	False	1364.500000	2045	82.464000	986	3205	2	chr5D.!!$F2	2219
10	TraesCS5B01G188400	chr5D	300955479	300957180	1701	False	1023.500000	1858	89.092000	822	2456	2	chr5D.!!$F4	1634
11	TraesCS5B01G188400	chr5D	299388109	299391535	3426	False	985.750000	2950	92.737500	1	3559	4	chr5D.!!$F3	3558
12	TraesCS5B01G188400	chr5D	299004263	299004949	686	False	407.500000	641	87.479000	770	1412	2	chr5D.!!$F1	642
13	TraesCS5B01G188400	chr5A	396415632	396417262	1630	False	960.000000	1807	86.630500	867	2456	2	chr5A.!!$F4	1589
14	TraesCS5B01G188400	chr5A	396430272	396431232	960	False	865.000000	865	83.350000	2601	3559	1	chr5A.!!$F1	958
15	TraesCS5B01G188400	chr5A	398047591	398051323	3732	True	427.000000	669	83.681000	827	3133	2	chr5A.!!$R2	2306
16	TraesCS5B01G188400	chr3A	456906466	456907232	766	False	503.000000	503	79.452000	2354	3120	1	chr3A.!!$F1	766
17	TraesCS5B01G188400	chr7A	458707721	458711021	3300	True	216.666667	285	91.915333	1	283	3	chr7A.!!$R1	282

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
967	1147	0.183014	CCTGGCCTGAGCTCATCAAT	59.817	55.0	18.63	0.0	37.52	2.57	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2960	10089	0.674895	AGAGCCAAGACATTGCCGAC	60.675	55.0	0.0	0.0	34.91	4.79	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
958	1138	2.047844	CGTCACACCTGGCCTGAG	60.048	66.667	11.88	5.87	0.00	3.35
959	1139	2.359230	GTCACACCTGGCCTGAGC	60.359	66.667	11.88	0.00	38.76	4.26
960	1140	2.527624	TCACACCTGGCCTGAGCT	60.528	61.111	11.88	0.00	39.73	4.09
961	1141	2.046507	CACACCTGGCCTGAGCTC	60.047	66.667	11.88	6.82	39.73	4.09
962	1142	2.527624	ACACCTGGCCTGAGCTCA	60.528	61.111	17.19	17.19	39.73	4.26
963	1143	1.922369	ACACCTGGCCTGAGCTCAT	60.922	57.895	18.63	0.00	39.73	2.90
964	1144	1.153208	CACCTGGCCTGAGCTCATC	60.153	63.158	18.63	12.02	39.73	2.92
966	1146	1.203441	ACCTGGCCTGAGCTCATCAA	61.203	55.000	18.63	4.95	37.52	2.57
967	1147	0.183014	CCTGGCCTGAGCTCATCAAT	59.817	55.000	18.63	0.00	37.52	2.57
969	1149	2.158711	CCTGGCCTGAGCTCATCAATAA	60.159	50.000	18.63	0.40	37.52	1.40
970	1150	3.548770	CTGGCCTGAGCTCATCAATAAA	58.451	45.455	18.63	0.00	37.52	1.40
971	1151	3.949754	CTGGCCTGAGCTCATCAATAAAA	59.050	43.478	18.63	0.00	37.52	1.52
974	1154	3.243334	GCCTGAGCTCATCAATAAAAGGC	60.243	47.826	18.63	18.53	37.52	4.35
975	1155	3.949754	CCTGAGCTCATCAATAAAAGGCA	59.050	43.478	18.63	0.00	37.52	4.75
976	1156	4.036498	CCTGAGCTCATCAATAAAAGGCAG	59.964	45.833	18.63	0.00	37.52	4.85
977	1157	3.379372	TGAGCTCATCAATAAAAGGCAGC	59.621	43.478	13.74	0.00	34.02	5.25
978	1158	2.692041	AGCTCATCAATAAAAGGCAGCC	59.308	45.455	1.84	1.84	0.00	4.85
979	1159	2.428171	GCTCATCAATAAAAGGCAGCCA	59.572	45.455	15.80	0.00	0.00	4.75
981	1161	4.427312	CTCATCAATAAAAGGCAGCCAAC	58.573	43.478	15.80	0.00	0.00	3.77
982	1162	3.195396	TCATCAATAAAAGGCAGCCAACC	59.805	43.478	15.80	0.00	0.00	3.77
983	1163	2.888212	TCAATAAAAGGCAGCCAACCT	58.112	42.857	15.80	0.00	40.02	3.50
2035	7651	0.602638	TCACGCCTCCAACATGTGAC	60.603	55.000	0.00	0.00	34.85	3.67
2260	7903	2.205074	GTTGACGATGATCGGAAGCAT	58.795	47.619	19.82	0.00	45.59	3.79
2263	7906	2.036346	TGACGATGATCGGAAGCATCAT	59.964	45.455	19.82	7.90	45.59	2.45
2277	7920	5.648092	GGAAGCATCATCATCATCATCATCA	59.352	40.000	0.00	0.00	0.00	3.07
2422	9478	5.764686	TCTCTTCTGCAAATTGTATGTGTGT	59.235	36.000	0.00	0.00	0.00	3.72
2458	9514	9.725019	TTGGATATATGAAAGTACATGATCCAC	57.275	33.333	18.06	0.00	44.32	4.02
2459	9515	8.879227	TGGATATATGAAAGTACATGATCCACA	58.121	33.333	16.08	0.00	42.40	4.17
2460	9516	9.725019	GGATATATGAAAGTACATGATCCACAA	57.275	33.333	0.00	0.00	40.21	3.33
2819	9948	7.040409	TCAGCTTCATATTTGCTATCTCGACTA	60.040	37.037	0.00	0.00	35.05	2.59
2857	9986	4.804139	ACATTCCTCTAAATTACACGAGCG	59.196	41.667	0.00	0.00	0.00	5.03
2859	9988	4.025015	TCCTCTAAATTACACGAGCGTC	57.975	45.455	0.00	0.00	0.00	5.19
2861	9990	2.782192	CTCTAAATTACACGAGCGTCGG	59.218	50.000	11.13	4.22	45.59	4.79
2883	10012	3.740631	TGACTATCGCTTCATGATGCT	57.259	42.857	25.72	14.15	0.00	3.79
2901	10030	1.336056	GCTCGCCTACTTTATCCGAGG	60.336	57.143	9.89	0.00	43.89	4.63
2956	10085	6.039941	GCTATTAGGATCCGCATGACTAGTAT	59.960	42.308	5.98	0.00	0.00	2.12
2960	10089	4.576873	AGGATCCGCATGACTAGTATATCG	59.423	45.833	5.98	0.00	0.00	2.92
3024	10153	7.777095	AGTCTTCTAGAGTTGGTACATCAATC	58.223	38.462	0.00	0.00	39.30	2.67
3044	10175	4.652421	TCATGTCACAAAATGCAACTGT	57.348	36.364	0.00	0.00	0.00	3.55
3062	10193	6.740960	GCAACTGTAGATGAGCCAAGATAGAT	60.741	42.308	0.00	0.00	0.00	1.98
3100	10675	3.440173	GCAAATAGCCACAACAGCTTCTA	59.560	43.478	0.00	0.00	41.83	2.10
3105	10680	2.571653	AGCCACAACAGCTTCTACCATA	59.428	45.455	0.00	0.00	37.24	2.74
3125	10700	7.731054	ACCATAGTTTCTTAAAATTGTGCCAA	58.269	30.769	0.00	0.00	0.00	4.52
3225	10815	4.157840	TGTGTGCGAGACATATAACTCTGT	59.842	41.667	0.00	0.00	36.78	3.41
3226	10816	4.500837	GTGTGCGAGACATATAACTCTGTG	59.499	45.833	0.00	0.00	36.78	3.66
3235	10825	5.579718	ACATATAACTCTGTGTCGCAGTAC	58.420	41.667	13.00	0.00	45.23	2.73
3291	10882	1.826487	GGAGCGGGTTTTGGTGTGT	60.826	57.895	0.00	0.00	0.00	3.72
3292	10883	1.388837	GGAGCGGGTTTTGGTGTGTT	61.389	55.000	0.00	0.00	0.00	3.32
3293	10884	0.458260	GAGCGGGTTTTGGTGTGTTT	59.542	50.000	0.00	0.00	0.00	2.83
3294	10885	0.458260	AGCGGGTTTTGGTGTGTTTC	59.542	50.000	0.00	0.00	0.00	2.78
3295	10886	0.458260	GCGGGTTTTGGTGTGTTTCT	59.542	50.000	0.00	0.00	0.00	2.52
3296	10887	1.134936	GCGGGTTTTGGTGTGTTTCTT	60.135	47.619	0.00	0.00	0.00	2.52
3297	10888	2.675603	GCGGGTTTTGGTGTGTTTCTTT	60.676	45.455	0.00	0.00	0.00	2.52
3298	10889	3.591023	CGGGTTTTGGTGTGTTTCTTTT	58.409	40.909	0.00	0.00	0.00	2.27
3299	10890	3.997681	CGGGTTTTGGTGTGTTTCTTTTT	59.002	39.130	0.00	0.00	0.00	1.94
3300	10891	4.092237	CGGGTTTTGGTGTGTTTCTTTTTC	59.908	41.667	0.00	0.00	0.00	2.29
3301	10892	4.393680	GGGTTTTGGTGTGTTTCTTTTTCC	59.606	41.667	0.00	0.00	0.00	3.13
3302	10893	5.242434	GGTTTTGGTGTGTTTCTTTTTCCT	58.758	37.500	0.00	0.00	0.00	3.36
3303	10894	5.703592	GGTTTTGGTGTGTTTCTTTTTCCTT	59.296	36.000	0.00	0.00	0.00	3.36
3304	10895	6.205853	GGTTTTGGTGTGTTTCTTTTTCCTTT	59.794	34.615	0.00	0.00	0.00	3.11
3305	10896	7.255312	GGTTTTGGTGTGTTTCTTTTTCCTTTT	60.255	33.333	0.00	0.00	0.00	2.27
3306	10897	7.809546	TTTGGTGTGTTTCTTTTTCCTTTTT	57.190	28.000	0.00	0.00	0.00	1.94
3412	11010	5.630661	TGTTTTCTTTGTTCCTTTGTCGA	57.369	34.783	0.00	0.00	0.00	4.20
3417	11015	8.440059	GTTTTCTTTGTTCCTTTGTCGATTTTT	58.560	29.630	0.00	0.00	0.00	1.94
3458	11059	4.208253	CGGTTTTCATCGGGTTTTCTTTTG	59.792	41.667	0.00	0.00	0.00	2.44
3465	11066	7.475771	TCATCGGGTTTTCTTTTGATTTTTG	57.524	32.000	0.00	0.00	0.00	2.44
3466	11067	7.044798	TCATCGGGTTTTCTTTTGATTTTTGT	58.955	30.769	0.00	0.00	0.00	2.83
3467	11068	7.550906	TCATCGGGTTTTCTTTTGATTTTTGTT	59.449	29.630	0.00	0.00	0.00	2.83

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
956	1136	3.243334	GGCTGCCTTTTATTGATGAGCTC	60.243	47.826	12.43	6.82	0.00	4.09
958	1138	2.428171	TGGCTGCCTTTTATTGATGAGC	59.572	45.455	21.03	0.00	0.00	4.26
959	1139	4.427312	GTTGGCTGCCTTTTATTGATGAG	58.573	43.478	21.03	0.00	0.00	2.90
960	1140	3.195396	GGTTGGCTGCCTTTTATTGATGA	59.805	43.478	21.03	0.00	0.00	2.92
961	1141	3.196254	AGGTTGGCTGCCTTTTATTGATG	59.804	43.478	21.03	0.00	31.04	3.07
962	1142	3.196254	CAGGTTGGCTGCCTTTTATTGAT	59.804	43.478	21.03	0.00	33.31	2.57
963	1143	2.562298	CAGGTTGGCTGCCTTTTATTGA	59.438	45.455	21.03	0.00	33.31	2.57
964	1144	2.932187	GCAGGTTGGCTGCCTTTTATTG	60.932	50.000	21.03	11.38	41.58	1.90
966	1146	0.897621	GCAGGTTGGCTGCCTTTTAT	59.102	50.000	21.03	0.00	41.58	1.40
967	1147	2.350738	GCAGGTTGGCTGCCTTTTA	58.649	52.632	21.03	0.00	41.58	1.52
974	1154	0.529378	GATTGGAAGCAGGTTGGCTG	59.471	55.000	0.00	0.00	45.07	4.85
976	1156	1.203287	GAAGATTGGAAGCAGGTTGGC	59.797	52.381	0.00	0.00	0.00	4.52
977	1157	2.229784	GTGAAGATTGGAAGCAGGTTGG	59.770	50.000	0.00	0.00	0.00	3.77
978	1158	2.229784	GGTGAAGATTGGAAGCAGGTTG	59.770	50.000	0.00	0.00	0.00	3.77
979	1159	2.158475	TGGTGAAGATTGGAAGCAGGTT	60.158	45.455	0.00	0.00	0.00	3.50
981	1161	2.205022	TGGTGAAGATTGGAAGCAGG	57.795	50.000	0.00	0.00	0.00	4.85
982	1162	3.760151	TGATTGGTGAAGATTGGAAGCAG	59.240	43.478	0.00	0.00	0.00	4.24
983	1163	3.507233	GTGATTGGTGAAGATTGGAAGCA	59.493	43.478	0.00	0.00	0.00	3.91
985	1165	4.081406	TGGTGATTGGTGAAGATTGGAAG	58.919	43.478	0.00	0.00	0.00	3.46
986	1166	4.111255	TGGTGATTGGTGAAGATTGGAA	57.889	40.909	0.00	0.00	0.00	3.53
988	1168	4.463539	TGATTGGTGATTGGTGAAGATTGG	59.536	41.667	0.00	0.00	0.00	3.16
989	1169	5.404946	GTGATTGGTGATTGGTGAAGATTG	58.595	41.667	0.00	0.00	0.00	2.67
2248	7870	3.756933	TGATGATGATGCTTCCGATCA	57.243	42.857	5.44	5.44	34.37	2.92
2260	7903	9.520515	AAGATTTGATGATGATGATGATGATGA	57.479	29.630	0.00	0.00	0.00	2.92
2263	7906	7.876068	TCGAAGATTTGATGATGATGATGATGA	59.124	33.333	0.00	0.00	0.00	2.92
2277	7920	7.411486	TCTAGGTCTTCTTCGAAGATTTGAT	57.589	36.000	27.51	16.08	35.04	2.57
2687	9813	6.102006	TGAACGTCGTTGATCCATAAAATC	57.898	37.500	16.75	0.00	0.00	2.17
2725	9851	4.774503	TGCCGCGCCACATGATCA	62.775	61.111	0.00	0.00	0.00	2.92
2739	9865	3.499737	CGTCATGTCCGGCTTGCC	61.500	66.667	0.00	0.75	0.00	4.52
2769	9898	8.182881	TGAAGTTTAGCGAAATACTCTCTAGAC	58.817	37.037	0.00	0.00	30.26	2.59
2834	9963	4.804139	CGCTCGTGTAATTTAGAGGAATGT	59.196	41.667	0.00	0.00	0.00	2.71
2843	9972	2.634982	ACCGACGCTCGTGTAATTTA	57.365	45.000	0.00	0.00	38.40	1.40
2857	9986	2.273370	TGAAGCGATAGTCAACCGAC	57.727	50.000	0.00	0.00	42.95	4.79
2859	9988	2.809446	TCATGAAGCGATAGTCAACCG	58.191	47.619	0.00	0.00	39.35	4.44
2861	9990	3.806521	AGCATCATGAAGCGATAGTCAAC	59.193	43.478	16.58	0.00	39.35	3.18
2883	10012	2.062971	ACCTCGGATAAAGTAGGCGA	57.937	50.000	0.00	0.00	31.98	5.54
2901	10030	4.069304	TGTGCCACAGTTGTAAAGGATAC	58.931	43.478	0.00	0.00	0.00	2.24
2956	10085	1.934589	CCAAGACATTGCCGACGATA	58.065	50.000	0.00	0.00	34.91	2.92
2960	10089	0.674895	AGAGCCAAGACATTGCCGAC	60.675	55.000	0.00	0.00	34.91	4.79
2999	10128	7.397476	TGATTGATGTACCAACTCTAGAAGACT	59.603	37.037	0.00	0.00	0.00	3.24
3024	10153	5.761003	TCTACAGTTGCATTTTGTGACATG	58.239	37.500	8.11	0.00	0.00	3.21
3044	10175	4.082517	GCGACATCTATCTTGGCTCATCTA	60.083	45.833	0.00	0.00	0.00	1.98
3062	10193	0.179059	TTGCTGAGACCAAAGCGACA	60.179	50.000	0.00	0.00	42.54	4.35
3100	10675	7.296628	TGGCACAATTTTAAGAAACTATGGT	57.703	32.000	0.00	0.00	31.92	3.55
3125	10700	3.862845	GGTTTTGCGAAGTTCAATGTTGT	59.137	39.130	3.32	0.00	0.00	3.32
3306	10897	6.307776	ACCAAACCAAAGGGAAAAAGAAAAA	58.692	32.000	0.00	0.00	38.05	1.94
3307	10898	5.882040	ACCAAACCAAAGGGAAAAAGAAAA	58.118	33.333	0.00	0.00	38.05	2.29
3479	11080	5.636121	TGCGTGATAGAGACGTGTTAAAAAT	59.364	36.000	0.00	0.00	39.08	1.82
3492	11095	9.803130	CAAAATTCTATATTGTGCGTGATAGAG	57.197	33.333	0.00	0.00	33.57	2.43

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.