Multiple sequence alignment - TraesCS5B01G187800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G187800 chr5B 100.000 5131 0 0 1 5131 339902844 339907974 0.000000e+00 9476.0
1 TraesCS5B01G187800 chr5B 100.000 34 0 0 3117 3150 339905927 339905960 4.290000e-06 63.9
2 TraesCS5B01G187800 chr5B 100.000 34 0 0 3084 3117 339905960 339905993 4.290000e-06 63.9
3 TraesCS5B01G187800 chr5D 93.034 2297 100 24 2848 5131 298941446 298943695 0.000000e+00 3301.0
4 TraesCS5B01G187800 chr5D 89.363 1335 97 22 939 2255 298939600 298940907 0.000000e+00 1637.0
5 TraesCS5B01G187800 chr5D 92.500 520 30 4 2336 2855 298940906 298941416 0.000000e+00 736.0
6 TraesCS5B01G187800 chr5D 93.154 409 20 4 465 866 298938881 298939288 1.230000e-165 593.0
7 TraesCS5B01G187800 chr5A 92.572 2302 105 26 2848 5131 398885719 398883466 0.000000e+00 3243.0
8 TraesCS5B01G187800 chr5A 91.003 1734 106 27 465 2170 398888027 398886316 0.000000e+00 2292.0
9 TraesCS5B01G187800 chr5A 90.996 522 39 6 2336 2855 398886264 398885749 0.000000e+00 697.0
10 TraesCS5B01G187800 chr5A 95.082 61 3 0 2195 2255 398886323 398886263 4.230000e-16 97.1
11 TraesCS5B01G187800 chr4B 79.372 223 41 5 4610 4832 20229036 20229253 8.900000e-33 152.0
12 TraesCS5B01G187800 chr2A 94.737 95 3 2 2254 2347 694455384 694455291 4.140000e-31 147.0
13 TraesCS5B01G187800 chr2A 96.471 85 2 1 2254 2337 65084900 65084816 6.930000e-29 139.0
14 TraesCS5B01G187800 chr2A 92.553 94 6 1 2254 2346 4139303 4139210 3.220000e-27 134.0
15 TraesCS5B01G187800 chr7B 96.591 88 2 1 2253 2339 740996241 740996154 1.490000e-30 145.0
16 TraesCS5B01G187800 chr3D 96.591 88 2 1 2254 2340 434025880 434025793 1.490000e-30 145.0
17 TraesCS5B01G187800 chrUn 92.157 102 5 3 2238 2337 301350042 301349942 1.930000e-29 141.0
18 TraesCS5B01G187800 chrUn 92.157 102 5 3 2238 2337 348118193 348118293 1.930000e-29 141.0
19 TraesCS5B01G187800 chr7A 91.753 97 6 2 2254 2350 527538174 527538080 3.220000e-27 134.0
20 TraesCS5B01G187800 chr1B 88.393 112 10 3 2253 2363 593927162 593927053 1.160000e-26 132.0
21 TraesCS5B01G187800 chr1D 76.027 146 19 11 4685 4827 484320039 484320171 1.540000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G187800 chr5B 339902844 339907974 5130 False 3201.266667 9476 100.00000 1 5131 3 chr5B.!!$F1 5130
1 TraesCS5B01G187800 chr5D 298938881 298943695 4814 False 1566.750000 3301 92.01275 465 5131 4 chr5D.!!$F1 4666
2 TraesCS5B01G187800 chr5A 398883466 398888027 4561 True 1582.275000 3243 92.41325 465 5131 4 chr5A.!!$R1 4666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
140 141 0.033366 CCATCACCACACGTCACTCA 59.967 55.000 0.00 0.0 0.00 3.41 F
148 149 0.171679 ACACGTCACTCACACGAACA 59.828 50.000 0.00 0.0 39.75 3.18 F
1254 1534 0.110464 GTGCGCTGCTTCTGTTTCTC 60.110 55.000 9.73 0.0 0.00 2.87 F
2040 2334 1.203052 AGGCTGTGGAATTCAATTGCG 59.797 47.619 7.93 0.0 32.77 4.85 F
3420 3769 0.312102 GGTTTGAGGCTGACAGTTGC 59.688 55.000 3.99 0.0 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1234 1506 0.815213 AGAAACAGAAGCAGCGCACA 60.815 50.000 11.47 0.00 0.0 4.57 R
2021 2315 1.067635 ACGCAATTGAATTCCACAGCC 60.068 47.619 10.34 0.00 0.0 4.85 R
3189 3534 0.036858 TGATGGATTCCACGCGTTGA 60.037 50.000 10.22 9.65 35.8 3.18 R
4019 4379 1.097547 CAAAGTAGCCTGCATCCCCG 61.098 60.000 0.00 0.00 0.0 5.73 R
4375 4737 0.175531 AAACACAGGTGCACAAAGGC 59.824 50.000 20.43 0.00 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.546428 AAAATAAATAATATGTGCCCTTCAAGC 57.454 29.630 0.00 0.00 0.00 4.01
33 34 7.838079 ATAAATAATATGTGCCCTTCAAGCA 57.162 32.000 0.00 0.00 38.08 3.91
38 39 4.481195 TGCCCTTCAAGCACACTC 57.519 55.556 0.00 0.00 34.69 3.51
39 40 1.839191 TGCCCTTCAAGCACACTCT 59.161 52.632 0.00 0.00 34.69 3.24
40 41 0.183492 TGCCCTTCAAGCACACTCTT 59.817 50.000 0.00 0.00 34.69 2.85
41 42 0.595095 GCCCTTCAAGCACACTCTTG 59.405 55.000 0.00 0.00 43.53 3.02
42 43 0.595095 CCCTTCAAGCACACTCTTGC 59.405 55.000 0.00 0.00 42.29 4.01
55 56 7.930513 GCACACTCTTGCTTAAAGTTTATTT 57.069 32.000 0.00 0.00 39.59 1.40
56 57 8.352752 GCACACTCTTGCTTAAAGTTTATTTT 57.647 30.769 0.00 0.00 39.59 1.82
57 58 8.817100 GCACACTCTTGCTTAAAGTTTATTTTT 58.183 29.630 0.00 0.00 39.59 1.94
59 60 9.529325 ACACTCTTGCTTAAAGTTTATTTTTCC 57.471 29.630 0.00 0.00 37.18 3.13
60 61 9.750125 CACTCTTGCTTAAAGTTTATTTTTCCT 57.250 29.630 0.00 0.00 37.18 3.36
71 72 9.952030 AAAGTTTATTTTTCCTTTTCCTGTTCA 57.048 25.926 0.00 0.00 0.00 3.18
72 73 9.952030 AAGTTTATTTTTCCTTTTCCTGTTCAA 57.048 25.926 0.00 0.00 0.00 2.69
73 74 9.378551 AGTTTATTTTTCCTTTTCCTGTTCAAC 57.621 29.630 0.00 0.00 0.00 3.18
74 75 9.157104 GTTTATTTTTCCTTTTCCTGTTCAACA 57.843 29.630 0.00 0.00 0.00 3.33
75 76 9.898152 TTTATTTTTCCTTTTCCTGTTCAACAT 57.102 25.926 0.00 0.00 0.00 2.71
76 77 9.898152 TTATTTTTCCTTTTCCTGTTCAACATT 57.102 25.926 0.00 0.00 0.00 2.71
77 78 8.806429 ATTTTTCCTTTTCCTGTTCAACATTT 57.194 26.923 0.00 0.00 0.00 2.32
78 79 8.628630 TTTTTCCTTTTCCTGTTCAACATTTT 57.371 26.923 0.00 0.00 0.00 1.82
79 80 7.841915 TTTCCTTTTCCTGTTCAACATTTTC 57.158 32.000 0.00 0.00 0.00 2.29
80 81 6.790232 TCCTTTTCCTGTTCAACATTTTCT 57.210 33.333 0.00 0.00 0.00 2.52
81 82 7.181569 TCCTTTTCCTGTTCAACATTTTCTT 57.818 32.000 0.00 0.00 0.00 2.52
82 83 7.619965 TCCTTTTCCTGTTCAACATTTTCTTT 58.380 30.769 0.00 0.00 0.00 2.52
83 84 7.548780 TCCTTTTCCTGTTCAACATTTTCTTTG 59.451 33.333 0.00 0.00 0.00 2.77
84 85 7.548780 CCTTTTCCTGTTCAACATTTTCTTTGA 59.451 33.333 0.00 0.00 0.00 2.69
85 86 8.839310 TTTTCCTGTTCAACATTTTCTTTGAA 57.161 26.923 0.00 0.00 38.98 2.69
86 87 8.477984 TTTCCTGTTCAACATTTTCTTTGAAG 57.522 30.769 0.00 0.00 41.29 3.02
87 88 7.403312 TCCTGTTCAACATTTTCTTTGAAGA 57.597 32.000 0.00 0.00 41.29 2.87
88 89 7.835822 TCCTGTTCAACATTTTCTTTGAAGAA 58.164 30.769 2.16 2.16 41.29 2.52
100 101 7.780008 TTTCTTTGAAGAAACATCGAGTACA 57.220 32.000 13.38 0.00 46.80 2.90
101 102 7.962964 TTCTTTGAAGAAACATCGAGTACAT 57.037 32.000 3.79 0.00 41.75 2.29
102 103 7.582435 TCTTTGAAGAAACATCGAGTACATC 57.418 36.000 0.00 0.00 30.73 3.06
103 104 7.151976 TCTTTGAAGAAACATCGAGTACATCA 58.848 34.615 0.00 0.00 30.73 3.07
104 105 7.819415 TCTTTGAAGAAACATCGAGTACATCAT 59.181 33.333 0.00 0.00 30.73 2.45
105 106 8.996024 TTTGAAGAAACATCGAGTACATCATA 57.004 30.769 0.00 0.00 0.00 2.15
106 107 8.634475 TTGAAGAAACATCGAGTACATCATAG 57.366 34.615 0.00 0.00 0.00 2.23
107 108 7.996385 TGAAGAAACATCGAGTACATCATAGA 58.004 34.615 0.00 0.00 0.00 1.98
108 109 7.915923 TGAAGAAACATCGAGTACATCATAGAC 59.084 37.037 0.00 0.00 0.00 2.59
109 110 7.334844 AGAAACATCGAGTACATCATAGACA 57.665 36.000 0.00 0.00 0.00 3.41
110 111 7.197017 AGAAACATCGAGTACATCATAGACAC 58.803 38.462 0.00 0.00 0.00 3.67
111 112 6.451064 AACATCGAGTACATCATAGACACA 57.549 37.500 0.00 0.00 0.00 3.72
112 113 6.641169 ACATCGAGTACATCATAGACACAT 57.359 37.500 0.00 0.00 0.00 3.21
113 114 6.673106 ACATCGAGTACATCATAGACACATC 58.327 40.000 0.00 0.00 0.00 3.06
114 115 6.263168 ACATCGAGTACATCATAGACACATCA 59.737 38.462 0.00 0.00 0.00 3.07
115 116 6.061231 TCGAGTACATCATAGACACATCAC 57.939 41.667 0.00 0.00 0.00 3.06
116 117 5.823045 TCGAGTACATCATAGACACATCACT 59.177 40.000 0.00 0.00 0.00 3.41
117 118 6.990349 TCGAGTACATCATAGACACATCACTA 59.010 38.462 0.00 0.00 0.00 2.74
118 119 7.661847 TCGAGTACATCATAGACACATCACTAT 59.338 37.037 0.00 0.00 0.00 2.12
119 120 7.960195 CGAGTACATCATAGACACATCACTATC 59.040 40.741 0.00 0.00 0.00 2.08
120 121 8.697507 AGTACATCATAGACACATCACTATCA 57.302 34.615 0.00 0.00 0.00 2.15
121 122 8.572185 AGTACATCATAGACACATCACTATCAC 58.428 37.037 0.00 0.00 0.00 3.06
122 123 6.753180 ACATCATAGACACATCACTATCACC 58.247 40.000 0.00 0.00 0.00 4.02
123 124 6.324770 ACATCATAGACACATCACTATCACCA 59.675 38.462 0.00 0.00 0.00 4.17
124 125 6.983906 TCATAGACACATCACTATCACCAT 57.016 37.500 0.00 0.00 0.00 3.55
125 126 6.986250 TCATAGACACATCACTATCACCATC 58.014 40.000 0.00 0.00 0.00 3.51
126 127 6.550854 TCATAGACACATCACTATCACCATCA 59.449 38.462 0.00 0.00 0.00 3.07
127 128 5.016051 AGACACATCACTATCACCATCAC 57.984 43.478 0.00 0.00 0.00 3.06
128 129 4.122776 GACACATCACTATCACCATCACC 58.877 47.826 0.00 0.00 0.00 4.02
129 130 3.519107 ACACATCACTATCACCATCACCA 59.481 43.478 0.00 0.00 0.00 4.17
130 131 3.873361 CACATCACTATCACCATCACCAC 59.127 47.826 0.00 0.00 0.00 4.16
131 132 3.519107 ACATCACTATCACCATCACCACA 59.481 43.478 0.00 0.00 0.00 4.17
132 133 3.610040 TCACTATCACCATCACCACAC 57.390 47.619 0.00 0.00 0.00 3.82
133 134 2.094234 TCACTATCACCATCACCACACG 60.094 50.000 0.00 0.00 0.00 4.49
134 135 1.899814 ACTATCACCATCACCACACGT 59.100 47.619 0.00 0.00 0.00 4.49
135 136 2.094182 ACTATCACCATCACCACACGTC 60.094 50.000 0.00 0.00 0.00 4.34
136 137 0.684535 ATCACCATCACCACACGTCA 59.315 50.000 0.00 0.00 0.00 4.35
137 138 0.249699 TCACCATCACCACACGTCAC 60.250 55.000 0.00 0.00 0.00 3.67
138 139 0.249868 CACCATCACCACACGTCACT 60.250 55.000 0.00 0.00 0.00 3.41
139 140 0.033504 ACCATCACCACACGTCACTC 59.966 55.000 0.00 0.00 0.00 3.51
140 141 0.033366 CCATCACCACACGTCACTCA 59.967 55.000 0.00 0.00 0.00 3.41
141 142 1.139989 CATCACCACACGTCACTCAC 58.860 55.000 0.00 0.00 0.00 3.51
142 143 0.750249 ATCACCACACGTCACTCACA 59.250 50.000 0.00 0.00 0.00 3.58
143 144 0.179121 TCACCACACGTCACTCACAC 60.179 55.000 0.00 0.00 0.00 3.82
144 145 1.226859 ACCACACGTCACTCACACG 60.227 57.895 0.00 0.00 43.13 4.49
145 146 1.065109 CCACACGTCACTCACACGA 59.935 57.895 0.00 0.00 39.75 4.35
146 147 0.526739 CCACACGTCACTCACACGAA 60.527 55.000 0.00 0.00 39.75 3.85
147 148 0.570734 CACACGTCACTCACACGAAC 59.429 55.000 0.00 0.00 39.75 3.95
148 149 0.171679 ACACGTCACTCACACGAACA 59.828 50.000 0.00 0.00 39.75 3.18
149 150 1.202371 ACACGTCACTCACACGAACAT 60.202 47.619 0.00 0.00 39.75 2.71
150 151 1.190103 CACGTCACTCACACGAACATG 59.810 52.381 0.00 0.00 39.75 3.21
151 152 1.202371 ACGTCACTCACACGAACATGT 60.202 47.619 0.00 0.00 39.75 3.21
152 153 2.033675 ACGTCACTCACACGAACATGTA 59.966 45.455 0.00 0.00 39.75 2.29
153 154 2.404029 CGTCACTCACACGAACATGTAC 59.596 50.000 0.00 0.00 39.75 2.90
154 155 2.729882 GTCACTCACACGAACATGTACC 59.270 50.000 0.00 0.00 0.00 3.34
155 156 1.719246 CACTCACACGAACATGTACCG 59.281 52.381 16.06 16.06 0.00 4.02
156 157 1.610038 ACTCACACGAACATGTACCGA 59.390 47.619 22.18 4.42 0.00 4.69
157 158 2.034939 ACTCACACGAACATGTACCGAA 59.965 45.455 22.18 7.92 0.00 4.30
158 159 2.661675 CTCACACGAACATGTACCGAAG 59.338 50.000 22.18 16.66 0.00 3.79
159 160 2.293955 TCACACGAACATGTACCGAAGA 59.706 45.455 22.18 14.67 0.00 2.87
160 161 2.407361 CACACGAACATGTACCGAAGAC 59.593 50.000 22.18 0.00 0.00 3.01
161 162 2.295349 ACACGAACATGTACCGAAGACT 59.705 45.455 22.18 2.25 0.00 3.24
162 163 2.661675 CACGAACATGTACCGAAGACTG 59.338 50.000 22.18 9.54 0.00 3.51
163 164 1.654105 CGAACATGTACCGAAGACTGC 59.346 52.381 13.36 0.00 0.00 4.40
164 165 2.683968 GAACATGTACCGAAGACTGCA 58.316 47.619 0.00 0.00 0.00 4.41
165 166 2.370281 ACATGTACCGAAGACTGCAG 57.630 50.000 13.48 13.48 0.00 4.41
166 167 1.618837 ACATGTACCGAAGACTGCAGT 59.381 47.619 21.88 21.88 0.00 4.40
167 168 2.263077 CATGTACCGAAGACTGCAGTC 58.737 52.381 34.82 34.82 45.08 3.51
182 183 5.947228 CTGCAGTCATGGAGTTTCTAAAA 57.053 39.130 5.25 0.00 39.86 1.52
183 184 6.506500 CTGCAGTCATGGAGTTTCTAAAAT 57.493 37.500 5.25 0.00 39.86 1.82
184 185 6.899393 TGCAGTCATGGAGTTTCTAAAATT 57.101 33.333 0.00 0.00 0.00 1.82
185 186 6.680810 TGCAGTCATGGAGTTTCTAAAATTG 58.319 36.000 0.00 0.00 0.00 2.32
186 187 6.489700 TGCAGTCATGGAGTTTCTAAAATTGA 59.510 34.615 0.00 0.00 0.00 2.57
187 188 6.803807 GCAGTCATGGAGTTTCTAAAATTGAC 59.196 38.462 0.00 0.00 33.03 3.18
188 189 7.017645 CAGTCATGGAGTTTCTAAAATTGACG 58.982 38.462 0.00 0.00 36.84 4.35
189 190 6.710744 AGTCATGGAGTTTCTAAAATTGACGT 59.289 34.615 0.00 0.00 36.84 4.34
190 191 7.876068 AGTCATGGAGTTTCTAAAATTGACGTA 59.124 33.333 0.00 0.00 36.84 3.57
191 192 8.169268 GTCATGGAGTTTCTAAAATTGACGTAG 58.831 37.037 0.00 0.00 0.00 3.51
192 193 6.476243 TGGAGTTTCTAAAATTGACGTAGC 57.524 37.500 0.00 0.00 0.00 3.58
193 194 5.410439 TGGAGTTTCTAAAATTGACGTAGCC 59.590 40.000 0.00 0.00 0.00 3.93
194 195 5.410439 GGAGTTTCTAAAATTGACGTAGCCA 59.590 40.000 0.00 0.00 0.00 4.75
195 196 6.093633 GGAGTTTCTAAAATTGACGTAGCCAT 59.906 38.462 0.00 0.00 0.00 4.40
196 197 7.279313 GGAGTTTCTAAAATTGACGTAGCCATA 59.721 37.037 0.00 0.00 0.00 2.74
197 198 8.556213 AGTTTCTAAAATTGACGTAGCCATAA 57.444 30.769 0.00 0.00 0.00 1.90
198 199 9.005777 AGTTTCTAAAATTGACGTAGCCATAAA 57.994 29.630 0.00 0.00 0.00 1.40
199 200 9.615295 GTTTCTAAAATTGACGTAGCCATAAAA 57.385 29.630 0.00 0.00 0.00 1.52
219 220 4.481930 AAAACACGAGCAAAATCGATGA 57.518 36.364 0.00 0.00 45.56 2.92
220 221 3.455619 AACACGAGCAAAATCGATGAC 57.544 42.857 0.00 0.00 45.56 3.06
221 222 2.412870 ACACGAGCAAAATCGATGACA 58.587 42.857 0.00 0.00 45.56 3.58
222 223 2.157668 ACACGAGCAAAATCGATGACAC 59.842 45.455 0.00 0.00 45.56 3.67
223 224 1.732259 ACGAGCAAAATCGATGACACC 59.268 47.619 0.00 0.00 45.56 4.16
224 225 1.731709 CGAGCAAAATCGATGACACCA 59.268 47.619 0.00 0.00 45.56 4.17
225 226 2.352651 CGAGCAAAATCGATGACACCAT 59.647 45.455 0.00 0.00 45.56 3.55
226 227 3.181507 CGAGCAAAATCGATGACACCATT 60.182 43.478 0.00 0.00 45.56 3.16
227 228 4.033932 CGAGCAAAATCGATGACACCATTA 59.966 41.667 0.00 0.00 45.56 1.90
228 229 5.447144 CGAGCAAAATCGATGACACCATTAA 60.447 40.000 0.00 0.00 45.56 1.40
229 230 6.455360 AGCAAAATCGATGACACCATTAAT 57.545 33.333 0.00 0.00 32.09 1.40
230 231 6.866480 AGCAAAATCGATGACACCATTAATT 58.134 32.000 0.00 0.00 32.09 1.40
231 232 7.322664 AGCAAAATCGATGACACCATTAATTT 58.677 30.769 0.00 0.00 32.94 1.82
232 233 7.818930 AGCAAAATCGATGACACCATTAATTTT 59.181 29.630 0.00 0.00 37.49 1.82
233 234 8.442384 GCAAAATCGATGACACCATTAATTTTT 58.558 29.630 0.00 0.00 36.33 1.94
256 257 7.566760 TTTTCGTCCAATGATGCATAATACT 57.433 32.000 0.00 0.00 0.00 2.12
257 258 8.669946 TTTTCGTCCAATGATGCATAATACTA 57.330 30.769 0.00 0.00 0.00 1.82
258 259 8.846943 TTTCGTCCAATGATGCATAATACTAT 57.153 30.769 0.00 0.00 0.00 2.12
259 260 8.846943 TTCGTCCAATGATGCATAATACTATT 57.153 30.769 0.00 0.00 0.00 1.73
260 261 8.846943 TCGTCCAATGATGCATAATACTATTT 57.153 30.769 0.00 0.00 0.00 1.40
261 262 9.283768 TCGTCCAATGATGCATAATACTATTTT 57.716 29.630 0.00 0.00 0.00 1.82
262 263 9.897744 CGTCCAATGATGCATAATACTATTTTT 57.102 29.630 0.00 0.00 0.00 1.94
284 285 8.752766 TTTTACACGTAGAATAGAAACTGAGG 57.247 34.615 0.00 0.00 0.00 3.86
285 286 4.745649 ACACGTAGAATAGAAACTGAGGC 58.254 43.478 0.00 0.00 0.00 4.70
286 287 4.463186 ACACGTAGAATAGAAACTGAGGCT 59.537 41.667 0.00 0.00 0.00 4.58
287 288 5.038033 CACGTAGAATAGAAACTGAGGCTC 58.962 45.833 7.79 7.79 0.00 4.70
288 289 4.098196 ACGTAGAATAGAAACTGAGGCTCC 59.902 45.833 12.86 0.00 0.00 4.70
289 290 4.500035 CGTAGAATAGAAACTGAGGCTCCC 60.500 50.000 12.86 0.00 0.00 4.30
290 291 3.730269 AGAATAGAAACTGAGGCTCCCT 58.270 45.455 12.86 4.12 36.03 4.20
305 306 7.912778 GAGGCTCCCTCTCATCTATATTATT 57.087 40.000 2.15 0.00 46.41 1.40
306 307 8.317776 GAGGCTCCCTCTCATCTATATTATTT 57.682 38.462 2.15 0.00 46.41 1.40
307 308 8.088463 AGGCTCCCTCTCATCTATATTATTTG 57.912 38.462 0.00 0.00 0.00 2.32
308 309 7.682028 AGGCTCCCTCTCATCTATATTATTTGT 59.318 37.037 0.00 0.00 0.00 2.83
309 310 8.325046 GGCTCCCTCTCATCTATATTATTTGTT 58.675 37.037 0.00 0.00 0.00 2.83
310 311 9.160496 GCTCCCTCTCATCTATATTATTTGTTG 57.840 37.037 0.00 0.00 0.00 3.33
311 312 9.160496 CTCCCTCTCATCTATATTATTTGTTGC 57.840 37.037 0.00 0.00 0.00 4.17
312 313 8.884323 TCCCTCTCATCTATATTATTTGTTGCT 58.116 33.333 0.00 0.00 0.00 3.91
313 314 8.944029 CCCTCTCATCTATATTATTTGTTGCTG 58.056 37.037 0.00 0.00 0.00 4.41
314 315 8.944029 CCTCTCATCTATATTATTTGTTGCTGG 58.056 37.037 0.00 0.00 0.00 4.85
315 316 9.499479 CTCTCATCTATATTATTTGTTGCTGGT 57.501 33.333 0.00 0.00 0.00 4.00
316 317 9.851686 TCTCATCTATATTATTTGTTGCTGGTT 57.148 29.630 0.00 0.00 0.00 3.67
332 333 9.116067 TGTTGCTGGTTTAACATATACTATTCC 57.884 33.333 0.00 0.00 32.30 3.01
333 334 8.565416 GTTGCTGGTTTAACATATACTATTCCC 58.435 37.037 0.00 0.00 0.00 3.97
334 335 8.041143 TGCTGGTTTAACATATACTATTCCCT 57.959 34.615 0.00 0.00 0.00 4.20
335 336 8.154856 TGCTGGTTTAACATATACTATTCCCTC 58.845 37.037 0.00 0.00 0.00 4.30
336 337 7.606839 GCTGGTTTAACATATACTATTCCCTCC 59.393 40.741 0.00 0.00 0.00 4.30
337 338 7.673180 TGGTTTAACATATACTATTCCCTCCG 58.327 38.462 0.00 0.00 0.00 4.63
338 339 7.290714 TGGTTTAACATATACTATTCCCTCCGT 59.709 37.037 0.00 0.00 0.00 4.69
339 340 8.152898 GGTTTAACATATACTATTCCCTCCGTT 58.847 37.037 0.00 0.00 0.00 4.44
340 341 9.551734 GTTTAACATATACTATTCCCTCCGTTT 57.448 33.333 0.00 0.00 0.00 3.60
373 374 7.745620 AAGTTGTCGTCTTTTATTGGAATCT 57.254 32.000 0.00 0.00 0.00 2.40
374 375 8.842358 AAGTTGTCGTCTTTTATTGGAATCTA 57.158 30.769 0.00 0.00 0.00 1.98
375 376 9.449719 AAGTTGTCGTCTTTTATTGGAATCTAT 57.550 29.630 0.00 0.00 0.00 1.98
403 404 5.952526 AACTTATGTTTAGAAACGGTGGG 57.047 39.130 0.97 0.00 41.74 4.61
404 405 5.231702 ACTTATGTTTAGAAACGGTGGGA 57.768 39.130 0.97 0.00 41.74 4.37
405 406 5.243207 ACTTATGTTTAGAAACGGTGGGAG 58.757 41.667 0.97 0.00 41.74 4.30
406 407 3.782656 ATGTTTAGAAACGGTGGGAGT 57.217 42.857 0.97 0.00 41.74 3.85
407 408 4.895668 ATGTTTAGAAACGGTGGGAGTA 57.104 40.909 0.97 0.00 41.74 2.59
408 409 4.686191 TGTTTAGAAACGGTGGGAGTAA 57.314 40.909 0.97 0.00 41.74 2.24
409 410 5.231702 TGTTTAGAAACGGTGGGAGTAAT 57.768 39.130 0.97 0.00 41.74 1.89
410 411 6.357579 TGTTTAGAAACGGTGGGAGTAATA 57.642 37.500 0.97 0.00 41.74 0.98
411 412 6.400568 TGTTTAGAAACGGTGGGAGTAATAG 58.599 40.000 0.97 0.00 41.74 1.73
412 413 6.211184 TGTTTAGAAACGGTGGGAGTAATAGA 59.789 38.462 0.97 0.00 41.74 1.98
413 414 7.093201 TGTTTAGAAACGGTGGGAGTAATAGAT 60.093 37.037 0.97 0.00 41.74 1.98
414 415 8.416329 GTTTAGAAACGGTGGGAGTAATAGATA 58.584 37.037 0.00 0.00 0.00 1.98
415 416 8.537728 TTAGAAACGGTGGGAGTAATAGATAA 57.462 34.615 0.00 0.00 0.00 1.75
416 417 7.052142 AGAAACGGTGGGAGTAATAGATAAG 57.948 40.000 0.00 0.00 0.00 1.73
417 418 6.837568 AGAAACGGTGGGAGTAATAGATAAGA 59.162 38.462 0.00 0.00 0.00 2.10
418 419 6.651975 AACGGTGGGAGTAATAGATAAGAG 57.348 41.667 0.00 0.00 0.00 2.85
419 420 5.950023 ACGGTGGGAGTAATAGATAAGAGA 58.050 41.667 0.00 0.00 0.00 3.10
420 421 6.371278 ACGGTGGGAGTAATAGATAAGAGAA 58.629 40.000 0.00 0.00 0.00 2.87
421 422 6.264970 ACGGTGGGAGTAATAGATAAGAGAAC 59.735 42.308 0.00 0.00 0.00 3.01
422 423 6.264744 CGGTGGGAGTAATAGATAAGAGAACA 59.735 42.308 0.00 0.00 0.00 3.18
423 424 7.039644 CGGTGGGAGTAATAGATAAGAGAACAT 60.040 40.741 0.00 0.00 0.00 2.71
424 425 8.091449 GGTGGGAGTAATAGATAAGAGAACATG 58.909 40.741 0.00 0.00 0.00 3.21
425 426 8.091449 GTGGGAGTAATAGATAAGAGAACATGG 58.909 40.741 0.00 0.00 0.00 3.66
426 427 8.010697 TGGGAGTAATAGATAAGAGAACATGGA 58.989 37.037 0.00 0.00 0.00 3.41
427 428 8.527810 GGGAGTAATAGATAAGAGAACATGGAG 58.472 40.741 0.00 0.00 0.00 3.86
428 429 9.084533 GGAGTAATAGATAAGAGAACATGGAGT 57.915 37.037 0.00 0.00 0.00 3.85
575 580 3.314331 CCCACACAGACGCCTCCT 61.314 66.667 0.00 0.00 0.00 3.69
672 679 3.322466 CACGTGCCCCTTCTCCCT 61.322 66.667 0.82 0.00 0.00 4.20
756 765 1.280982 CGCAGCGATAAAGCAAGAGA 58.719 50.000 9.98 0.00 40.15 3.10
798 813 0.996583 AATAAAGCGGGTGGGAGGAA 59.003 50.000 0.00 0.00 0.00 3.36
919 947 3.465403 CCCCTCTCACTCGCCCAG 61.465 72.222 0.00 0.00 0.00 4.45
936 964 4.525949 GGTCTAGGGTTCCGGCGC 62.526 72.222 0.00 0.00 0.00 6.53
1017 1284 1.521681 GATGACGGGGAAGAAGCGG 60.522 63.158 0.00 0.00 0.00 5.52
1176 1443 4.367023 ATGGTACGTGCGTGCGGT 62.367 61.111 7.55 0.00 35.98 5.68
1220 1492 8.299570 GGTTGTTGATTAAACTGATTGACTGAT 58.700 33.333 0.00 0.00 39.70 2.90
1223 1495 7.094248 TGTTGATTAAACTGATTGACTGATGGG 60.094 37.037 0.00 0.00 39.70 4.00
1234 1506 6.438108 TGATTGACTGATGGGTTGATTGATTT 59.562 34.615 0.00 0.00 0.00 2.17
1245 1525 1.270274 TGATTGATTTGTGCGCTGCTT 59.730 42.857 9.73 0.00 0.00 3.91
1254 1534 0.110464 GTGCGCTGCTTCTGTTTCTC 60.110 55.000 9.73 0.00 0.00 2.87
1309 1591 2.489971 TCTGTTTCGTTGAATTCGCCT 58.510 42.857 0.04 0.00 0.00 5.52
1346 1628 7.346698 TGATGAAAATAATTTGGATTAGGGGCA 59.653 33.333 0.00 0.00 31.58 5.36
1361 1643 1.623811 GGGGCAGTTAAGACTCAGACA 59.376 52.381 0.00 0.00 32.54 3.41
1406 1688 3.895041 CCTTATCCTTTGTGGTTGTGGTT 59.105 43.478 0.00 0.00 37.07 3.67
1470 1752 2.044946 GGCCCTTTCGCTGGATGT 60.045 61.111 0.00 0.00 0.00 3.06
1479 1761 2.014335 TCGCTGGATGTGTGATGAAG 57.986 50.000 0.00 0.00 0.00 3.02
1500 1782 4.190772 AGTTTGTTTCAGTTTTGGGCATG 58.809 39.130 0.00 0.00 0.00 4.06
1601 1888 2.478539 GGATGATGACTTTTGCCGAAGC 60.479 50.000 0.00 0.00 40.48 3.86
1683 1971 8.986847 CCAATAATTCATAGAGCACTCTTGTAG 58.013 37.037 5.33 0.00 40.93 2.74
1716 2004 5.769662 ACAACAACTCTGATTAGAATTGGCA 59.230 36.000 12.55 0.00 42.76 4.92
1738 2026 5.380043 CAATCTTTGTATGGCTATGGAGGT 58.620 41.667 0.00 0.00 0.00 3.85
1755 2043 2.084546 AGGTTATGCAAAGCGGAAGAC 58.915 47.619 0.00 0.00 0.00 3.01
1772 2060 2.928334 AGACGGGAGACTTCGCTTATA 58.072 47.619 0.00 0.00 34.32 0.98
1881 2169 5.699458 CCGTTAGGTGTGTAATGTTTCTTCT 59.301 40.000 0.00 0.00 0.00 2.85
1923 2211 6.204852 TGGCATTGGGATTCAGTATCTTAT 57.795 37.500 0.00 0.00 33.53 1.73
1927 2215 7.665559 GGCATTGGGATTCAGTATCTTATGTTA 59.334 37.037 0.00 0.00 33.53 2.41
1983 2277 4.322080 TCGCTATGTTGTATGCTTAGCT 57.678 40.909 5.60 0.00 37.42 3.32
1988 2282 6.238211 CGCTATGTTGTATGCTTAGCTTCTTT 60.238 38.462 5.60 0.00 37.42 2.52
1994 2288 7.545965 TGTTGTATGCTTAGCTTCTTTCTAGTC 59.454 37.037 5.60 0.00 0.00 2.59
2004 2298 7.304497 AGCTTCTTTCTAGTCTTAGTTTCCA 57.696 36.000 0.00 0.00 0.00 3.53
2007 2301 9.089601 GCTTCTTTCTAGTCTTAGTTTCCATAC 57.910 37.037 0.00 0.00 0.00 2.39
2024 2318 7.670605 TTCCATACTACTACAATGTTAGGCT 57.329 36.000 0.00 0.00 0.00 4.58
2040 2334 1.203052 AGGCTGTGGAATTCAATTGCG 59.797 47.619 7.93 0.00 32.77 4.85
2048 2342 7.344910 TGTGGAATTCAATTGCGTTAAAATC 57.655 32.000 7.93 0.00 32.77 2.17
2062 2356 7.657336 TGCGTTAAAATCTTTTCCTGAGAATT 58.343 30.769 0.00 0.00 0.00 2.17
2079 2373 7.254829 CCTGAGAATTATCTGCTCAACTCATTG 60.255 40.741 1.19 0.00 38.12 2.82
2081 2375 7.279536 TGAGAATTATCTGCTCAACTCATTGAC 59.720 37.037 1.19 0.00 36.57 3.18
2105 2399 4.213270 CGAAACACTAGAAGATGCACCAAA 59.787 41.667 0.00 0.00 0.00 3.28
2107 2401 6.568462 CGAAACACTAGAAGATGCACCAAAAT 60.568 38.462 0.00 0.00 0.00 1.82
2116 2410 8.314143 AGAAGATGCACCAAAATAAACATTTG 57.686 30.769 0.00 0.00 37.48 2.32
2120 2414 8.901793 AGATGCACCAAAATAAACATTTGTTTT 58.098 25.926 13.40 3.84 45.07 2.43
2122 2416 9.943163 ATGCACCAAAATAAACATTTGTTTTAC 57.057 25.926 13.40 3.99 45.07 2.01
2145 2439 6.597562 ACAAACTGGATTAGTGTTAAGTCCA 58.402 36.000 0.00 0.00 40.26 4.02
2152 2446 6.013725 TGGATTAGTGTTAAGTCCAGATGTGT 60.014 38.462 0.00 0.00 34.23 3.72
2156 2450 8.514330 TTAGTGTTAAGTCCAGATGTGTTTTT 57.486 30.769 0.00 0.00 0.00 1.94
2158 2452 5.977129 GTGTTAAGTCCAGATGTGTTTTTGG 59.023 40.000 0.00 0.00 0.00 3.28
2160 2454 4.918810 AAGTCCAGATGTGTTTTTGGTC 57.081 40.909 0.00 0.00 32.51 4.02
2161 2455 3.897239 AGTCCAGATGTGTTTTTGGTCA 58.103 40.909 0.00 0.00 32.51 4.02
2162 2456 3.632145 AGTCCAGATGTGTTTTTGGTCAC 59.368 43.478 0.00 0.00 35.43 3.67
2166 2460 5.186797 TCCAGATGTGTTTTTGGTCACTTTT 59.813 36.000 0.00 0.00 35.82 2.27
2167 2461 5.291614 CCAGATGTGTTTTTGGTCACTTTTG 59.708 40.000 0.00 0.00 35.82 2.44
2168 2462 5.868801 CAGATGTGTTTTTGGTCACTTTTGT 59.131 36.000 0.00 0.00 35.82 2.83
2169 2463 6.368516 CAGATGTGTTTTTGGTCACTTTTGTT 59.631 34.615 0.00 0.00 35.82 2.83
2170 2464 6.934083 AGATGTGTTTTTGGTCACTTTTGTTT 59.066 30.769 0.00 0.00 35.82 2.83
2176 2470 8.244113 TGTTTTTGGTCACTTTTGTTTTTGTTT 58.756 25.926 0.00 0.00 0.00 2.83
2192 2486 4.630894 TTGTTTTGGTGTAGAAGCACTG 57.369 40.909 0.00 0.00 39.21 3.66
2193 2487 2.357637 TGTTTTGGTGTAGAAGCACTGC 59.642 45.455 0.00 0.00 39.21 4.40
2199 2493 2.289444 GGTGTAGAAGCACTGCCTTGTA 60.289 50.000 0.00 0.00 39.21 2.41
2255 2549 1.801178 GCAGAGTGGTTGAACAGCTAC 59.199 52.381 0.00 0.00 0.00 3.58
2256 2550 2.548920 GCAGAGTGGTTGAACAGCTACT 60.549 50.000 7.28 7.28 36.19 2.57
2257 2551 3.321497 CAGAGTGGTTGAACAGCTACTC 58.679 50.000 20.56 20.56 45.61 2.59
2258 2552 2.300437 AGAGTGGTTGAACAGCTACTCC 59.700 50.000 22.93 11.39 46.12 3.85
2259 2553 1.348036 AGTGGTTGAACAGCTACTCCC 59.652 52.381 0.00 0.00 27.91 4.30
2260 2554 1.348036 GTGGTTGAACAGCTACTCCCT 59.652 52.381 0.00 0.00 0.00 4.20
2261 2555 1.623811 TGGTTGAACAGCTACTCCCTC 59.376 52.381 0.00 0.00 0.00 4.30
2262 2556 1.903183 GGTTGAACAGCTACTCCCTCT 59.097 52.381 0.00 0.00 0.00 3.69
2263 2557 2.354203 GGTTGAACAGCTACTCCCTCTG 60.354 54.545 0.00 0.00 0.00 3.35
2264 2558 2.300437 GTTGAACAGCTACTCCCTCTGT 59.700 50.000 0.00 0.00 42.28 3.41
2265 2559 3.451402 TGAACAGCTACTCCCTCTGTA 57.549 47.619 0.00 0.00 39.86 2.74
2266 2560 3.774734 TGAACAGCTACTCCCTCTGTAA 58.225 45.455 0.00 0.00 39.86 2.41
2267 2561 4.157246 TGAACAGCTACTCCCTCTGTAAA 58.843 43.478 0.00 0.00 39.86 2.01
2268 2562 4.220821 TGAACAGCTACTCCCTCTGTAAAG 59.779 45.833 0.00 0.00 39.86 1.85
2269 2563 4.048970 ACAGCTACTCCCTCTGTAAAGA 57.951 45.455 0.00 0.00 39.08 2.52
2270 2564 4.417437 ACAGCTACTCCCTCTGTAAAGAA 58.583 43.478 0.00 0.00 39.08 2.52
2271 2565 4.838986 ACAGCTACTCCCTCTGTAAAGAAA 59.161 41.667 0.00 0.00 39.08 2.52
2272 2566 5.485708 ACAGCTACTCCCTCTGTAAAGAAAT 59.514 40.000 0.00 0.00 39.08 2.17
2273 2567 6.668283 ACAGCTACTCCCTCTGTAAAGAAATA 59.332 38.462 0.00 0.00 39.08 1.40
2274 2568 7.345914 ACAGCTACTCCCTCTGTAAAGAAATAT 59.654 37.037 0.00 0.00 39.08 1.28
2275 2569 8.861086 CAGCTACTCCCTCTGTAAAGAAATATA 58.139 37.037 0.00 0.00 0.00 0.86
2276 2570 9.435570 AGCTACTCCCTCTGTAAAGAAATATAA 57.564 33.333 0.00 0.00 0.00 0.98
2277 2571 9.699703 GCTACTCCCTCTGTAAAGAAATATAAG 57.300 37.037 0.00 0.00 0.00 1.73
2280 2574 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
2281 2575 8.319057 TCCCTCTGTAAAGAAATATAAGAGCA 57.681 34.615 0.00 0.00 0.00 4.26
2282 2576 8.938883 TCCCTCTGTAAAGAAATATAAGAGCAT 58.061 33.333 0.00 0.00 0.00 3.79
2283 2577 9.566432 CCCTCTGTAAAGAAATATAAGAGCATT 57.434 33.333 0.00 0.00 0.00 3.56
2331 2625 8.608844 AATGCTCTTATATTTCTTTACGGAGG 57.391 34.615 0.00 0.00 0.00 4.30
2332 2626 6.522054 TGCTCTTATATTTCTTTACGGAGGG 58.478 40.000 0.00 0.00 0.00 4.30
2333 2627 6.325545 TGCTCTTATATTTCTTTACGGAGGGA 59.674 38.462 0.00 0.00 0.00 4.20
2334 2628 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
2335 2629 7.471679 GCTCTTATATTTCTTTACGGAGGGAGT 60.472 40.741 0.00 0.00 0.00 3.85
2336 2630 9.075678 CTCTTATATTTCTTTACGGAGGGAGTA 57.924 37.037 0.00 0.00 0.00 2.59
2346 2640 2.686915 ACGGAGGGAGTAGTTCGTTATG 59.313 50.000 0.00 0.00 0.00 1.90
2352 2646 3.998341 GGGAGTAGTTCGTTATGTTTGCA 59.002 43.478 0.00 0.00 0.00 4.08
2354 2648 5.390567 GGGAGTAGTTCGTTATGTTTGCAAG 60.391 44.000 0.00 0.00 0.00 4.01
2363 2657 9.601971 GTTCGTTATGTTTGCAAGTAAGATTTA 57.398 29.630 0.00 0.00 0.00 1.40
2412 2706 5.868043 TGTTCTGATGACTATTGCTGTTG 57.132 39.130 0.00 0.00 0.00 3.33
2415 2709 6.656270 TGTTCTGATGACTATTGCTGTTGAAT 59.344 34.615 0.00 0.00 0.00 2.57
2432 2726 7.695480 TGTTGAATGCCAGCTAAATAGTTTA 57.305 32.000 0.00 0.00 0.00 2.01
2532 2826 7.617723 TGGTATTGCAACTTTTCCCTATAATGT 59.382 33.333 0.00 0.00 0.00 2.71
2592 2886 5.843673 TTTATGTTTCAGGACTGCAAACA 57.156 34.783 21.03 21.03 40.79 2.83
2595 2889 4.734398 TGTTTCAGGACTGCAAACAATT 57.266 36.364 18.66 0.00 37.50 2.32
2597 2891 5.486526 TGTTTCAGGACTGCAAACAATTTT 58.513 33.333 18.66 0.00 37.50 1.82
2598 2892 5.580297 TGTTTCAGGACTGCAAACAATTTTC 59.420 36.000 18.66 0.00 37.50 2.29
2677 2971 9.294614 TGACTATGCATGCCATATATGTTTTAA 57.705 29.630 16.68 0.00 35.91 1.52
2684 2978 7.490725 GCATGCCATATATGTTTTAAACACACA 59.509 33.333 13.01 2.16 45.50 3.72
2688 2982 9.498307 GCCATATATGTTTTAAACACACAGTAC 57.502 33.333 13.01 0.00 45.50 2.73
2722 3016 3.006323 TGGCCGCAAAAGTGTCAATAAAT 59.994 39.130 0.00 0.00 0.00 1.40
2803 3099 1.384191 GTCATTGGCCTCAACCCCT 59.616 57.895 3.32 0.00 35.48 4.79
2814 3110 2.120274 AACCCCTGGCCATGGTTG 59.880 61.111 29.54 17.34 40.75 3.77
2850 3146 3.900966 TGAGGTGATGAGGAATCAGTG 57.099 47.619 0.00 0.00 46.09 3.66
3070 3403 3.885297 ACTTTCTTGTGCTAGTTGTGCAT 59.115 39.130 0.00 0.00 42.69 3.96
3075 3408 1.887854 TGTGCTAGTTGTGCATTGCAT 59.112 42.857 15.49 0.78 41.91 3.96
3117 3462 6.784473 TCCCACATGACATAGTGATTCTAGAT 59.216 38.462 15.37 0.00 37.97 1.98
3118 3463 7.950124 TCCCACATGACATAGTGATTCTAGATA 59.050 37.037 15.37 0.00 37.97 1.98
3119 3464 8.756927 CCCACATGACATAGTGATTCTAGATAT 58.243 37.037 15.37 0.00 37.97 1.63
3130 3475 8.196378 AGTGATTCTAGATATTAAGGTCCCAC 57.804 38.462 0.00 0.00 0.00 4.61
3131 3476 7.789831 AGTGATTCTAGATATTAAGGTCCCACA 59.210 37.037 0.00 0.00 0.00 4.17
3132 3477 8.598041 GTGATTCTAGATATTAAGGTCCCACAT 58.402 37.037 0.00 0.00 0.00 3.21
3133 3478 8.597167 TGATTCTAGATATTAAGGTCCCACATG 58.403 37.037 0.00 0.00 0.00 3.21
3134 3479 8.742125 ATTCTAGATATTAAGGTCCCACATGA 57.258 34.615 0.00 0.00 0.00 3.07
3135 3480 7.540474 TCTAGATATTAAGGTCCCACATGAC 57.460 40.000 0.00 0.00 34.42 3.06
3136 3481 7.073208 TCTAGATATTAAGGTCCCACATGACA 58.927 38.462 0.00 0.00 36.97 3.58
3137 3482 6.770286 AGATATTAAGGTCCCACATGACAT 57.230 37.500 0.00 0.00 36.97 3.06
3138 3483 7.872061 AGATATTAAGGTCCCACATGACATA 57.128 36.000 0.00 0.00 36.97 2.29
3139 3484 7.911651 AGATATTAAGGTCCCACATGACATAG 58.088 38.462 0.00 0.00 36.97 2.23
3140 3485 5.975988 ATTAAGGTCCCACATGACATAGT 57.024 39.130 0.00 0.00 36.97 2.12
3141 3486 3.634397 AAGGTCCCACATGACATAGTG 57.366 47.619 0.00 9.67 36.97 2.74
3142 3487 2.832838 AGGTCCCACATGACATAGTGA 58.167 47.619 15.37 0.00 37.97 3.41
3143 3488 3.387962 AGGTCCCACATGACATAGTGAT 58.612 45.455 15.37 0.00 37.97 3.06
3144 3489 3.782523 AGGTCCCACATGACATAGTGATT 59.217 43.478 15.37 0.25 37.97 2.57
3145 3490 4.130118 GGTCCCACATGACATAGTGATTC 58.870 47.826 15.37 7.84 37.97 2.52
3146 3491 4.141620 GGTCCCACATGACATAGTGATTCT 60.142 45.833 15.37 0.00 37.97 2.40
3147 3492 5.070446 GGTCCCACATGACATAGTGATTCTA 59.930 44.000 15.37 0.00 37.97 2.10
3148 3493 6.219473 GTCCCACATGACATAGTGATTCTAG 58.781 44.000 15.37 0.00 37.97 2.43
3149 3494 6.040955 GTCCCACATGACATAGTGATTCTAGA 59.959 42.308 15.37 0.00 37.97 2.43
3153 3498 7.930325 CCACATGACATAGTGATTCTAGACAAT 59.070 37.037 15.37 0.00 37.97 2.71
3179 3524 1.340211 ACGTCCCAAGTGTTGAACCAA 60.340 47.619 0.00 0.00 0.00 3.67
3189 3534 6.239289 CCAAGTGTTGAACCAATTAATCCTGT 60.239 38.462 0.00 0.00 0.00 4.00
3209 3554 0.801872 CAACGCGTGGAATCCATCAA 59.198 50.000 14.98 0.00 35.28 2.57
3349 3698 5.797934 TCACAAACGTTTTTCATTGTCTGTC 59.202 36.000 11.66 0.00 33.97 3.51
3420 3769 0.312102 GGTTTGAGGCTGACAGTTGC 59.688 55.000 3.99 0.00 0.00 4.17
3488 3837 5.530915 TGTCTTGTATGTTGAAAGGGAACTG 59.469 40.000 0.00 0.00 42.68 3.16
3528 3879 5.656416 TGGACTTCAAGAACTGGTGAATTTT 59.344 36.000 0.00 0.00 33.45 1.82
3560 3911 6.219417 AGACCATGATAGTCTGAAACTCTG 57.781 41.667 0.00 0.00 42.94 3.35
3561 3912 5.954752 AGACCATGATAGTCTGAAACTCTGA 59.045 40.000 0.00 0.00 42.94 3.27
3562 3913 6.438741 AGACCATGATAGTCTGAAACTCTGAA 59.561 38.462 0.00 0.00 42.94 3.02
3563 3914 7.125507 AGACCATGATAGTCTGAAACTCTGAAT 59.874 37.037 0.00 0.00 42.94 2.57
3564 3915 8.311395 ACCATGATAGTCTGAAACTCTGAATA 57.689 34.615 0.00 0.00 39.55 1.75
3596 3947 6.959639 AGTTTTGCCATCTTGTTTCTTAGA 57.040 33.333 0.00 0.00 0.00 2.10
3597 3948 6.739112 AGTTTTGCCATCTTGTTTCTTAGAC 58.261 36.000 0.00 0.00 0.00 2.59
3617 3968 9.961265 CTTAGACAACAATGATGCATAATGAAT 57.039 29.630 0.00 0.00 0.00 2.57
3626 3977 9.788960 CAATGATGCATAATGAATAAGATGAGG 57.211 33.333 0.00 0.00 0.00 3.86
3658 4018 4.847198 TCACTGATCCTGTGCACATATTT 58.153 39.130 22.00 5.69 34.16 1.40
3667 4027 5.183713 TCCTGTGCACATATTTCTTCCTTTG 59.816 40.000 22.00 2.85 0.00 2.77
3709 4069 6.166982 CCATAGCCTCCTAACAAATACTAGC 58.833 44.000 0.00 0.00 0.00 3.42
3730 4090 3.127721 GCTGCACCACTTTTATCCTTCTC 59.872 47.826 0.00 0.00 0.00 2.87
3746 4106 3.321497 CTTCTCCGCCATTCTAGCATAC 58.679 50.000 0.00 0.00 0.00 2.39
3766 4126 8.749499 AGCATACGATTGATAACTTACGTTTAC 58.251 33.333 0.00 0.00 34.59 2.01
3857 4217 0.601558 ATGCAAGCCAAAGCACTCAG 59.398 50.000 0.00 0.00 44.49 3.35
3890 4250 1.047596 TGCCCAACACAAGCAACCAT 61.048 50.000 0.00 0.00 32.56 3.55
3962 4322 0.320508 AGAACTCGGCGGTCTTTTCC 60.321 55.000 7.21 0.00 0.00 3.13
4019 4379 1.004044 CCATACCATCTGGATCAGGGC 59.996 57.143 2.55 0.00 38.94 5.19
4118 4478 1.630126 ATTCGGACAGCCCAGCTCAT 61.630 55.000 0.00 0.00 36.40 2.90
4179 4539 3.002791 TGGAAGAAGAATAGCAAGCACG 58.997 45.455 0.00 0.00 0.00 5.34
4249 4610 2.894387 GGCTGCGAGATGCCTGTC 60.894 66.667 0.00 0.00 45.26 3.51
4375 4737 6.202762 TGTTGCTTTGTCAAGATACTGTGTAG 59.797 38.462 0.00 0.00 30.57 2.74
4531 4893 3.078153 TCTCAGGCCTGGAGACCATATAT 59.922 47.826 32.23 0.00 36.52 0.86
4717 5079 9.445786 AATCTGTGTGTTTATTTTTGTAACTCG 57.554 29.630 0.00 0.00 0.00 4.18
4746 5114 8.199449 CACAAAGATGGCCATATATTTTGAACT 58.801 33.333 30.86 16.59 0.00 3.01
4789 5157 3.060628 CGTTTTGACTGGCAACTTTTGTG 59.939 43.478 0.00 0.00 35.91 3.33
4903 5271 0.541863 GGATTGACGTGTGGAGGGAT 59.458 55.000 0.00 0.00 0.00 3.85
4918 5286 1.163408 GGGATAGGGAGAGGGAGAGT 58.837 60.000 0.00 0.00 0.00 3.24
4929 5297 2.316372 AGAGGGAGAGTCAGGGTTACAT 59.684 50.000 0.00 0.00 0.00 2.29
5025 5393 5.061311 CGGCATTGATCTTGTTTTGAACATC 59.939 40.000 0.00 0.00 41.79 3.06
5034 5402 9.612620 GATCTTGTTTTGAACATCTCGTAAAAT 57.387 29.630 0.00 0.00 41.79 1.82
5042 5411 9.982291 TTTGAACATCTCGTAAAATAATAGTGC 57.018 29.630 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.546428 GCTTGAAGGGCACATATTATTTATTTT 57.454 29.630 0.00 0.00 0.00 1.82
7 8 8.703743 TGCTTGAAGGGCACATATTATTTATTT 58.296 29.630 0.00 0.00 34.56 1.40
8 9 8.248904 TGCTTGAAGGGCACATATTATTTATT 57.751 30.769 0.00 0.00 34.56 1.40
9 10 7.838079 TGCTTGAAGGGCACATATTATTTAT 57.162 32.000 0.00 0.00 34.56 1.40
21 22 0.183492 AAGAGTGTGCTTGAAGGGCA 59.817 50.000 0.00 0.00 37.36 5.36
22 23 0.595095 CAAGAGTGTGCTTGAAGGGC 59.405 55.000 0.00 0.00 46.31 5.19
23 24 0.595095 GCAAGAGTGTGCTTGAAGGG 59.405 55.000 8.18 0.00 46.31 3.95
31 32 7.930513 AAATAAACTTTAAGCAAGAGTGTGC 57.069 32.000 0.00 0.00 45.28 4.57
33 34 9.529325 GGAAAAATAAACTTTAAGCAAGAGTGT 57.471 29.630 0.00 0.00 36.21 3.55
34 35 9.750125 AGGAAAAATAAACTTTAAGCAAGAGTG 57.250 29.630 0.00 0.00 36.21 3.51
45 46 9.952030 TGAACAGGAAAAGGAAAAATAAACTTT 57.048 25.926 0.00 0.00 34.87 2.66
46 47 9.952030 TTGAACAGGAAAAGGAAAAATAAACTT 57.048 25.926 0.00 0.00 0.00 2.66
47 48 9.378551 GTTGAACAGGAAAAGGAAAAATAAACT 57.621 29.630 0.00 0.00 0.00 2.66
48 49 9.157104 TGTTGAACAGGAAAAGGAAAAATAAAC 57.843 29.630 0.00 0.00 0.00 2.01
49 50 9.898152 ATGTTGAACAGGAAAAGGAAAAATAAA 57.102 25.926 3.74 0.00 0.00 1.40
50 51 9.898152 AATGTTGAACAGGAAAAGGAAAAATAA 57.102 25.926 3.74 0.00 0.00 1.40
51 52 9.898152 AAATGTTGAACAGGAAAAGGAAAAATA 57.102 25.926 3.74 0.00 0.00 1.40
52 53 8.806429 AAATGTTGAACAGGAAAAGGAAAAAT 57.194 26.923 3.74 0.00 0.00 1.82
53 54 8.628630 AAAATGTTGAACAGGAAAAGGAAAAA 57.371 26.923 3.74 0.00 0.00 1.94
54 55 8.100164 AGAAAATGTTGAACAGGAAAAGGAAAA 58.900 29.630 3.74 0.00 0.00 2.29
55 56 7.619965 AGAAAATGTTGAACAGGAAAAGGAAA 58.380 30.769 3.74 0.00 0.00 3.13
56 57 7.181569 AGAAAATGTTGAACAGGAAAAGGAA 57.818 32.000 3.74 0.00 0.00 3.36
57 58 6.790232 AGAAAATGTTGAACAGGAAAAGGA 57.210 33.333 3.74 0.00 0.00 3.36
58 59 7.548780 TCAAAGAAAATGTTGAACAGGAAAAGG 59.451 33.333 3.74 0.00 30.93 3.11
59 60 8.477984 TCAAAGAAAATGTTGAACAGGAAAAG 57.522 30.769 3.74 0.00 30.93 2.27
60 61 8.839310 TTCAAAGAAAATGTTGAACAGGAAAA 57.161 26.923 3.74 0.00 38.50 2.29
61 62 8.310382 TCTTCAAAGAAAATGTTGAACAGGAAA 58.690 29.630 3.74 0.00 38.50 3.13
62 63 7.835822 TCTTCAAAGAAAATGTTGAACAGGAA 58.164 30.769 3.74 0.00 38.50 3.36
63 64 7.403312 TCTTCAAAGAAAATGTTGAACAGGA 57.597 32.000 3.74 0.00 38.50 3.86
77 78 7.655732 TGATGTACTCGATGTTTCTTCAAAGAA 59.344 33.333 1.06 1.06 42.91 2.52
78 79 7.151976 TGATGTACTCGATGTTTCTTCAAAGA 58.848 34.615 0.00 0.00 0.00 2.52
79 80 7.351414 TGATGTACTCGATGTTTCTTCAAAG 57.649 36.000 0.00 0.00 0.00 2.77
80 81 7.905604 ATGATGTACTCGATGTTTCTTCAAA 57.094 32.000 0.00 0.00 0.00 2.69
81 82 8.466798 TCTATGATGTACTCGATGTTTCTTCAA 58.533 33.333 0.00 0.00 0.00 2.69
82 83 7.915923 GTCTATGATGTACTCGATGTTTCTTCA 59.084 37.037 0.00 0.00 0.00 3.02
83 84 7.915923 TGTCTATGATGTACTCGATGTTTCTTC 59.084 37.037 0.00 0.00 0.00 2.87
84 85 7.702772 GTGTCTATGATGTACTCGATGTTTCTT 59.297 37.037 0.00 0.00 0.00 2.52
85 86 7.148069 TGTGTCTATGATGTACTCGATGTTTCT 60.148 37.037 0.00 0.00 0.00 2.52
86 87 6.972901 TGTGTCTATGATGTACTCGATGTTTC 59.027 38.462 0.00 0.00 0.00 2.78
87 88 6.863275 TGTGTCTATGATGTACTCGATGTTT 58.137 36.000 0.00 0.00 0.00 2.83
88 89 6.451064 TGTGTCTATGATGTACTCGATGTT 57.549 37.500 0.00 0.00 0.00 2.71
89 90 6.263168 TGATGTGTCTATGATGTACTCGATGT 59.737 38.462 0.00 0.00 0.00 3.06
90 91 6.580416 GTGATGTGTCTATGATGTACTCGATG 59.420 42.308 0.00 0.00 0.00 3.84
91 92 6.488344 AGTGATGTGTCTATGATGTACTCGAT 59.512 38.462 0.00 0.00 0.00 3.59
92 93 5.823045 AGTGATGTGTCTATGATGTACTCGA 59.177 40.000 0.00 0.00 0.00 4.04
93 94 6.066054 AGTGATGTGTCTATGATGTACTCG 57.934 41.667 0.00 0.00 0.00 4.18
94 95 8.787852 TGATAGTGATGTGTCTATGATGTACTC 58.212 37.037 0.00 0.00 0.00 2.59
95 96 8.572185 GTGATAGTGATGTGTCTATGATGTACT 58.428 37.037 0.00 0.00 0.00 2.73
96 97 7.810282 GGTGATAGTGATGTGTCTATGATGTAC 59.190 40.741 0.00 0.00 0.00 2.90
97 98 7.505585 TGGTGATAGTGATGTGTCTATGATGTA 59.494 37.037 0.00 0.00 0.00 2.29
98 99 6.324770 TGGTGATAGTGATGTGTCTATGATGT 59.675 38.462 0.00 0.00 0.00 3.06
99 100 6.752168 TGGTGATAGTGATGTGTCTATGATG 58.248 40.000 0.00 0.00 0.00 3.07
100 101 6.983906 TGGTGATAGTGATGTGTCTATGAT 57.016 37.500 0.00 0.00 0.00 2.45
101 102 6.550854 TGATGGTGATAGTGATGTGTCTATGA 59.449 38.462 0.00 0.00 0.00 2.15
102 103 6.644181 GTGATGGTGATAGTGATGTGTCTATG 59.356 42.308 0.00 0.00 0.00 2.23
103 104 6.239430 GGTGATGGTGATAGTGATGTGTCTAT 60.239 42.308 0.00 0.00 0.00 1.98
104 105 5.069119 GGTGATGGTGATAGTGATGTGTCTA 59.931 44.000 0.00 0.00 0.00 2.59
105 106 4.141846 GGTGATGGTGATAGTGATGTGTCT 60.142 45.833 0.00 0.00 0.00 3.41
106 107 4.122776 GGTGATGGTGATAGTGATGTGTC 58.877 47.826 0.00 0.00 0.00 3.67
107 108 3.519107 TGGTGATGGTGATAGTGATGTGT 59.481 43.478 0.00 0.00 0.00 3.72
108 109 3.873361 GTGGTGATGGTGATAGTGATGTG 59.127 47.826 0.00 0.00 0.00 3.21
109 110 3.519107 TGTGGTGATGGTGATAGTGATGT 59.481 43.478 0.00 0.00 0.00 3.06
110 111 3.873361 GTGTGGTGATGGTGATAGTGATG 59.127 47.826 0.00 0.00 0.00 3.07
111 112 3.430790 CGTGTGGTGATGGTGATAGTGAT 60.431 47.826 0.00 0.00 0.00 3.06
112 113 2.094234 CGTGTGGTGATGGTGATAGTGA 60.094 50.000 0.00 0.00 0.00 3.41
113 114 2.270923 CGTGTGGTGATGGTGATAGTG 58.729 52.381 0.00 0.00 0.00 2.74
114 115 1.899814 ACGTGTGGTGATGGTGATAGT 59.100 47.619 0.00 0.00 0.00 2.12
115 116 2.094234 TGACGTGTGGTGATGGTGATAG 60.094 50.000 0.00 0.00 0.00 2.08
116 117 1.896465 TGACGTGTGGTGATGGTGATA 59.104 47.619 0.00 0.00 0.00 2.15
117 118 0.684535 TGACGTGTGGTGATGGTGAT 59.315 50.000 0.00 0.00 0.00 3.06
118 119 0.249699 GTGACGTGTGGTGATGGTGA 60.250 55.000 0.00 0.00 0.00 4.02
119 120 0.249868 AGTGACGTGTGGTGATGGTG 60.250 55.000 0.00 0.00 0.00 4.17
120 121 0.033504 GAGTGACGTGTGGTGATGGT 59.966 55.000 0.00 0.00 0.00 3.55
121 122 0.033366 TGAGTGACGTGTGGTGATGG 59.967 55.000 0.00 0.00 0.00 3.51
122 123 1.139989 GTGAGTGACGTGTGGTGATG 58.860 55.000 0.00 0.00 0.00 3.07
123 124 0.750249 TGTGAGTGACGTGTGGTGAT 59.250 50.000 0.00 0.00 0.00 3.06
124 125 0.179121 GTGTGAGTGACGTGTGGTGA 60.179 55.000 0.00 0.00 0.00 4.02
125 126 1.479420 CGTGTGAGTGACGTGTGGTG 61.479 60.000 0.00 0.00 32.06 4.17
126 127 1.226859 CGTGTGAGTGACGTGTGGT 60.227 57.895 0.00 0.00 32.06 4.16
127 128 0.526739 TTCGTGTGAGTGACGTGTGG 60.527 55.000 0.00 0.00 38.04 4.17
128 129 0.570734 GTTCGTGTGAGTGACGTGTG 59.429 55.000 0.00 0.00 38.04 3.82
129 130 0.171679 TGTTCGTGTGAGTGACGTGT 59.828 50.000 0.00 0.00 38.04 4.49
130 131 1.190103 CATGTTCGTGTGAGTGACGTG 59.810 52.381 0.00 0.00 38.04 4.49
131 132 1.202371 ACATGTTCGTGTGAGTGACGT 60.202 47.619 0.00 0.00 38.04 4.34
132 133 1.487482 ACATGTTCGTGTGAGTGACG 58.513 50.000 0.00 0.00 38.20 4.35
133 134 2.729882 GGTACATGTTCGTGTGAGTGAC 59.270 50.000 2.30 0.00 33.62 3.67
134 135 2.606065 CGGTACATGTTCGTGTGAGTGA 60.606 50.000 2.30 0.00 33.62 3.41
135 136 1.719246 CGGTACATGTTCGTGTGAGTG 59.281 52.381 2.30 0.00 33.62 3.51
136 137 1.610038 TCGGTACATGTTCGTGTGAGT 59.390 47.619 2.30 0.00 33.62 3.41
137 138 2.341318 TCGGTACATGTTCGTGTGAG 57.659 50.000 2.30 0.57 33.62 3.51
138 139 2.293955 TCTTCGGTACATGTTCGTGTGA 59.706 45.455 2.30 6.60 33.62 3.58
139 140 2.407361 GTCTTCGGTACATGTTCGTGTG 59.593 50.000 2.30 4.57 33.62 3.82
140 141 2.295349 AGTCTTCGGTACATGTTCGTGT 59.705 45.455 2.30 3.20 36.13 4.49
141 142 2.661675 CAGTCTTCGGTACATGTTCGTG 59.338 50.000 2.30 7.09 0.00 4.35
142 143 2.925306 GCAGTCTTCGGTACATGTTCGT 60.925 50.000 2.30 0.00 0.00 3.85
143 144 1.654105 GCAGTCTTCGGTACATGTTCG 59.346 52.381 2.30 9.33 0.00 3.95
144 145 2.668457 CTGCAGTCTTCGGTACATGTTC 59.332 50.000 2.30 0.00 0.00 3.18
145 146 2.037251 ACTGCAGTCTTCGGTACATGTT 59.963 45.455 15.25 0.00 0.00 2.71
146 147 1.618837 ACTGCAGTCTTCGGTACATGT 59.381 47.619 15.25 2.69 0.00 3.21
147 148 2.263077 GACTGCAGTCTTCGGTACATG 58.737 52.381 34.54 0.00 41.65 3.21
148 149 1.893137 TGACTGCAGTCTTCGGTACAT 59.107 47.619 38.81 6.59 44.99 2.29
149 150 1.324383 TGACTGCAGTCTTCGGTACA 58.676 50.000 38.81 20.09 44.99 2.90
150 151 2.263077 CATGACTGCAGTCTTCGGTAC 58.737 52.381 38.81 17.84 44.99 3.34
151 152 1.204704 CCATGACTGCAGTCTTCGGTA 59.795 52.381 38.81 23.25 44.99 4.02
152 153 0.036952 CCATGACTGCAGTCTTCGGT 60.037 55.000 38.81 21.05 44.99 4.69
153 154 0.247460 TCCATGACTGCAGTCTTCGG 59.753 55.000 38.81 33.40 44.99 4.30
154 155 1.067283 ACTCCATGACTGCAGTCTTCG 60.067 52.381 38.81 28.20 44.99 3.79
155 156 2.758736 ACTCCATGACTGCAGTCTTC 57.241 50.000 38.81 20.60 44.99 2.87
156 157 3.072184 AGAAACTCCATGACTGCAGTCTT 59.928 43.478 38.81 32.20 44.99 3.01
157 158 2.636893 AGAAACTCCATGACTGCAGTCT 59.363 45.455 38.81 25.24 44.99 3.24
158 159 3.051081 AGAAACTCCATGACTGCAGTC 57.949 47.619 35.04 35.04 44.97 3.51
159 160 4.623932 TTAGAAACTCCATGACTGCAGT 57.376 40.909 21.88 21.88 0.00 4.40
160 161 5.947228 TTTTAGAAACTCCATGACTGCAG 57.053 39.130 13.48 13.48 0.00 4.41
161 162 6.489700 TCAATTTTAGAAACTCCATGACTGCA 59.510 34.615 0.00 0.00 0.00 4.41
162 163 6.803807 GTCAATTTTAGAAACTCCATGACTGC 59.196 38.462 0.00 0.00 33.65 4.40
163 164 7.017645 CGTCAATTTTAGAAACTCCATGACTG 58.982 38.462 0.00 0.00 34.12 3.51
164 165 6.710744 ACGTCAATTTTAGAAACTCCATGACT 59.289 34.615 0.00 0.00 34.12 3.41
165 166 6.899114 ACGTCAATTTTAGAAACTCCATGAC 58.101 36.000 0.00 0.00 33.22 3.06
166 167 7.148474 GCTACGTCAATTTTAGAAACTCCATGA 60.148 37.037 0.00 0.00 0.00 3.07
167 168 6.961554 GCTACGTCAATTTTAGAAACTCCATG 59.038 38.462 0.00 0.00 0.00 3.66
168 169 6.093633 GGCTACGTCAATTTTAGAAACTCCAT 59.906 38.462 0.00 0.00 0.00 3.41
169 170 5.410439 GGCTACGTCAATTTTAGAAACTCCA 59.590 40.000 0.00 0.00 0.00 3.86
170 171 5.410439 TGGCTACGTCAATTTTAGAAACTCC 59.590 40.000 0.00 0.00 0.00 3.85
171 172 6.476243 TGGCTACGTCAATTTTAGAAACTC 57.524 37.500 0.00 0.00 0.00 3.01
172 173 8.556213 TTATGGCTACGTCAATTTTAGAAACT 57.444 30.769 0.00 0.00 0.00 2.66
173 174 9.615295 TTTTATGGCTACGTCAATTTTAGAAAC 57.385 29.630 0.00 0.00 0.00 2.78
197 198 4.675114 GTCATCGATTTTGCTCGTGTTTTT 59.325 37.500 0.00 0.00 39.62 1.94
198 199 4.219033 GTCATCGATTTTGCTCGTGTTTT 58.781 39.130 0.00 0.00 39.62 2.43
199 200 3.249799 TGTCATCGATTTTGCTCGTGTTT 59.750 39.130 0.00 0.00 39.62 2.83
200 201 2.805671 TGTCATCGATTTTGCTCGTGTT 59.194 40.909 0.00 0.00 39.62 3.32
201 202 2.157668 GTGTCATCGATTTTGCTCGTGT 59.842 45.455 0.00 0.00 39.62 4.49
202 203 2.474526 GGTGTCATCGATTTTGCTCGTG 60.475 50.000 0.00 0.00 39.62 4.35
203 204 1.732259 GGTGTCATCGATTTTGCTCGT 59.268 47.619 0.00 0.00 39.62 4.18
204 205 1.731709 TGGTGTCATCGATTTTGCTCG 59.268 47.619 0.00 0.00 39.99 5.03
205 206 4.361451 AATGGTGTCATCGATTTTGCTC 57.639 40.909 0.00 0.00 32.24 4.26
206 207 5.895636 TTAATGGTGTCATCGATTTTGCT 57.104 34.783 0.00 0.00 32.24 3.91
207 208 7.524294 AAATTAATGGTGTCATCGATTTTGC 57.476 32.000 0.00 0.00 30.50 3.68
231 232 7.995289 AGTATTATGCATCATTGGACGAAAAA 58.005 30.769 0.19 0.00 0.00 1.94
232 233 7.566760 AGTATTATGCATCATTGGACGAAAA 57.433 32.000 0.19 0.00 0.00 2.29
233 234 8.846943 ATAGTATTATGCATCATTGGACGAAA 57.153 30.769 0.19 0.00 0.00 3.46
234 235 8.846943 AATAGTATTATGCATCATTGGACGAA 57.153 30.769 0.19 0.00 0.00 3.85
235 236 8.846943 AAATAGTATTATGCATCATTGGACGA 57.153 30.769 0.19 0.00 0.00 4.20
236 237 9.897744 AAAAATAGTATTATGCATCATTGGACG 57.102 29.630 0.19 0.00 0.00 4.79
258 259 9.199982 CCTCAGTTTCTATTCTACGTGTAAAAA 57.800 33.333 0.00 0.00 0.00 1.94
259 260 7.330208 GCCTCAGTTTCTATTCTACGTGTAAAA 59.670 37.037 0.00 0.00 0.00 1.52
260 261 6.810182 GCCTCAGTTTCTATTCTACGTGTAAA 59.190 38.462 0.00 0.00 0.00 2.01
261 262 6.152323 AGCCTCAGTTTCTATTCTACGTGTAA 59.848 38.462 0.00 0.00 0.00 2.41
262 263 5.651139 AGCCTCAGTTTCTATTCTACGTGTA 59.349 40.000 0.00 0.00 0.00 2.90
263 264 4.463186 AGCCTCAGTTTCTATTCTACGTGT 59.537 41.667 0.00 0.00 0.00 4.49
264 265 5.000012 AGCCTCAGTTTCTATTCTACGTG 58.000 43.478 0.00 0.00 0.00 4.49
265 266 4.098196 GGAGCCTCAGTTTCTATTCTACGT 59.902 45.833 0.00 0.00 0.00 3.57
266 267 4.500035 GGGAGCCTCAGTTTCTATTCTACG 60.500 50.000 0.00 0.00 0.00 3.51
267 268 4.651962 AGGGAGCCTCAGTTTCTATTCTAC 59.348 45.833 0.00 0.00 0.00 2.59
268 269 4.884961 AGGGAGCCTCAGTTTCTATTCTA 58.115 43.478 0.00 0.00 0.00 2.10
269 270 3.730269 AGGGAGCCTCAGTTTCTATTCT 58.270 45.455 0.00 0.00 0.00 2.40
282 283 7.682028 ACAAATAATATAGATGAGAGGGAGCCT 59.318 37.037 0.00 0.00 36.03 4.58
283 284 7.856415 ACAAATAATATAGATGAGAGGGAGCC 58.144 38.462 0.00 0.00 0.00 4.70
284 285 9.160496 CAACAAATAATATAGATGAGAGGGAGC 57.840 37.037 0.00 0.00 0.00 4.70
285 286 9.160496 GCAACAAATAATATAGATGAGAGGGAG 57.840 37.037 0.00 0.00 0.00 4.30
286 287 8.884323 AGCAACAAATAATATAGATGAGAGGGA 58.116 33.333 0.00 0.00 0.00 4.20
287 288 8.944029 CAGCAACAAATAATATAGATGAGAGGG 58.056 37.037 0.00 0.00 0.00 4.30
288 289 8.944029 CCAGCAACAAATAATATAGATGAGAGG 58.056 37.037 0.00 0.00 0.00 3.69
289 290 9.499479 ACCAGCAACAAATAATATAGATGAGAG 57.501 33.333 0.00 0.00 0.00 3.20
290 291 9.851686 AACCAGCAACAAATAATATAGATGAGA 57.148 29.630 0.00 0.00 0.00 3.27
306 307 9.116067 GGAATAGTATATGTTAAACCAGCAACA 57.884 33.333 0.00 0.00 38.89 3.33
307 308 8.565416 GGGAATAGTATATGTTAAACCAGCAAC 58.435 37.037 0.00 0.00 0.00 4.17
308 309 8.499406 AGGGAATAGTATATGTTAAACCAGCAA 58.501 33.333 0.00 0.00 0.00 3.91
309 310 8.041143 AGGGAATAGTATATGTTAAACCAGCA 57.959 34.615 0.00 0.00 0.00 4.41
310 311 7.606839 GGAGGGAATAGTATATGTTAAACCAGC 59.393 40.741 0.00 0.00 0.00 4.85
311 312 7.817962 CGGAGGGAATAGTATATGTTAAACCAG 59.182 40.741 0.00 0.00 0.00 4.00
312 313 7.290714 ACGGAGGGAATAGTATATGTTAAACCA 59.709 37.037 0.00 0.00 0.00 3.67
313 314 7.674120 ACGGAGGGAATAGTATATGTTAAACC 58.326 38.462 0.00 0.00 0.00 3.27
314 315 9.551734 AAACGGAGGGAATAGTATATGTTAAAC 57.448 33.333 0.00 0.00 0.00 2.01
347 348 9.449719 AGATTCCAATAAAAGACGACAACTTAT 57.550 29.630 0.00 0.00 0.00 1.73
348 349 8.842358 AGATTCCAATAAAAGACGACAACTTA 57.158 30.769 0.00 0.00 0.00 2.24
349 350 7.745620 AGATTCCAATAAAAGACGACAACTT 57.254 32.000 0.00 0.00 0.00 2.66
378 379 7.068470 TCCCACCGTTTCTAAACATAAGTTTTT 59.932 33.333 0.83 0.00 45.32 1.94
379 380 6.546772 TCCCACCGTTTCTAAACATAAGTTTT 59.453 34.615 0.83 0.00 45.32 2.43
381 382 5.623169 TCCCACCGTTTCTAAACATAAGTT 58.377 37.500 6.41 0.00 38.81 2.66
382 383 5.221783 ACTCCCACCGTTTCTAAACATAAGT 60.222 40.000 6.41 0.00 38.81 2.24
383 384 5.243207 ACTCCCACCGTTTCTAAACATAAG 58.757 41.667 6.41 0.00 38.81 1.73
384 385 5.231702 ACTCCCACCGTTTCTAAACATAA 57.768 39.130 6.41 0.00 38.81 1.90
385 386 4.895668 ACTCCCACCGTTTCTAAACATA 57.104 40.909 6.41 0.00 38.81 2.29
386 387 3.782656 ACTCCCACCGTTTCTAAACAT 57.217 42.857 6.41 0.00 38.81 2.71
387 388 4.686191 TTACTCCCACCGTTTCTAAACA 57.314 40.909 6.41 0.00 38.81 2.83
388 389 6.633856 TCTATTACTCCCACCGTTTCTAAAC 58.366 40.000 0.00 0.00 35.59 2.01
389 390 6.855763 TCTATTACTCCCACCGTTTCTAAA 57.144 37.500 0.00 0.00 0.00 1.85
390 391 8.537728 TTATCTATTACTCCCACCGTTTCTAA 57.462 34.615 0.00 0.00 0.00 2.10
391 392 8.000709 TCTTATCTATTACTCCCACCGTTTCTA 58.999 37.037 0.00 0.00 0.00 2.10
392 393 6.837568 TCTTATCTATTACTCCCACCGTTTCT 59.162 38.462 0.00 0.00 0.00 2.52
393 394 7.014038 TCTCTTATCTATTACTCCCACCGTTTC 59.986 40.741 0.00 0.00 0.00 2.78
394 395 6.837568 TCTCTTATCTATTACTCCCACCGTTT 59.162 38.462 0.00 0.00 0.00 3.60
395 396 6.371278 TCTCTTATCTATTACTCCCACCGTT 58.629 40.000 0.00 0.00 0.00 4.44
396 397 5.950023 TCTCTTATCTATTACTCCCACCGT 58.050 41.667 0.00 0.00 0.00 4.83
397 398 6.264744 TGTTCTCTTATCTATTACTCCCACCG 59.735 42.308 0.00 0.00 0.00 4.94
398 399 7.598759 TGTTCTCTTATCTATTACTCCCACC 57.401 40.000 0.00 0.00 0.00 4.61
399 400 8.091449 CCATGTTCTCTTATCTATTACTCCCAC 58.909 40.741 0.00 0.00 0.00 4.61
400 401 8.010697 TCCATGTTCTCTTATCTATTACTCCCA 58.989 37.037 0.00 0.00 0.00 4.37
401 402 8.423906 TCCATGTTCTCTTATCTATTACTCCC 57.576 38.462 0.00 0.00 0.00 4.30
402 403 9.084533 ACTCCATGTTCTCTTATCTATTACTCC 57.915 37.037 0.00 0.00 0.00 3.85
406 407 9.877222 TGGTACTCCATGTTCTCTTATCTATTA 57.123 33.333 0.00 0.00 39.03 0.98
407 408 8.783660 TGGTACTCCATGTTCTCTTATCTATT 57.216 34.615 0.00 0.00 39.03 1.73
408 409 8.783660 TTGGTACTCCATGTTCTCTTATCTAT 57.216 34.615 0.00 0.00 43.91 1.98
409 410 8.642432 CATTGGTACTCCATGTTCTCTTATCTA 58.358 37.037 0.00 0.00 43.91 1.98
410 411 7.419518 CCATTGGTACTCCATGTTCTCTTATCT 60.420 40.741 0.00 0.00 43.91 1.98
411 412 6.708054 CCATTGGTACTCCATGTTCTCTTATC 59.292 42.308 0.00 0.00 43.91 1.75
412 413 6.386927 TCCATTGGTACTCCATGTTCTCTTAT 59.613 38.462 1.86 0.00 43.91 1.73
413 414 5.724370 TCCATTGGTACTCCATGTTCTCTTA 59.276 40.000 1.86 0.00 43.91 2.10
414 415 4.536090 TCCATTGGTACTCCATGTTCTCTT 59.464 41.667 1.86 0.00 43.91 2.85
415 416 4.104086 TCCATTGGTACTCCATGTTCTCT 58.896 43.478 1.86 0.00 43.91 3.10
416 417 4.487714 TCCATTGGTACTCCATGTTCTC 57.512 45.455 1.86 0.00 43.91 2.87
417 418 6.560304 AGATATCCATTGGTACTCCATGTTCT 59.440 38.462 1.86 0.00 43.91 3.01
418 419 6.773638 AGATATCCATTGGTACTCCATGTTC 58.226 40.000 1.86 0.00 43.91 3.18
419 420 6.770286 AGATATCCATTGGTACTCCATGTT 57.230 37.500 1.86 0.00 43.91 2.71
420 421 6.770286 AAGATATCCATTGGTACTCCATGT 57.230 37.500 1.86 0.00 43.91 3.21
421 422 8.469309 AAAAAGATATCCATTGGTACTCCATG 57.531 34.615 1.86 0.00 43.91 3.66
450 451 4.186077 TCCATTGGTACACCCTCAAAAA 57.814 40.909 1.86 0.00 39.29 1.94
451 452 3.885976 TCCATTGGTACACCCTCAAAA 57.114 42.857 1.86 0.00 39.29 2.44
452 453 5.686387 CGATATCCATTGGTACACCCTCAAA 60.686 44.000 1.86 0.00 39.29 2.69
453 454 4.202315 CGATATCCATTGGTACACCCTCAA 60.202 45.833 1.86 0.00 39.29 3.02
454 455 3.323691 CGATATCCATTGGTACACCCTCA 59.676 47.826 1.86 0.00 39.29 3.86
455 456 3.576982 TCGATATCCATTGGTACACCCTC 59.423 47.826 1.86 0.00 39.29 4.30
456 457 3.583228 TCGATATCCATTGGTACACCCT 58.417 45.455 1.86 0.00 39.29 4.34
457 458 4.253685 CATCGATATCCATTGGTACACCC 58.746 47.826 0.00 0.00 39.29 4.61
458 459 4.894784 ACATCGATATCCATTGGTACACC 58.105 43.478 0.00 0.00 39.29 4.16
459 460 9.647797 TTTATACATCGATATCCATTGGTACAC 57.352 33.333 0.00 0.00 39.29 2.90
460 461 9.647797 GTTTATACATCGATATCCATTGGTACA 57.352 33.333 0.00 0.00 0.00 2.90
461 462 9.647797 TGTTTATACATCGATATCCATTGGTAC 57.352 33.333 0.00 0.00 0.00 3.34
463 464 8.999431 GTTGTTTATACATCGATATCCATTGGT 58.001 33.333 0.00 0.00 33.44 3.67
575 580 1.923395 CTGAAGGGTGGGGCCACTA 60.923 63.158 6.53 0.00 45.52 2.74
589 594 0.687757 CGATGGGAGAGGGGACTGAA 60.688 60.000 0.00 0.00 44.43 3.02
704 711 2.110967 GCTGCTGTGTCGATGGCAT 61.111 57.895 0.00 0.00 34.12 4.40
712 719 3.771491 CGTCGCTGCTGCTGTGTC 61.771 66.667 17.64 12.28 36.97 3.67
798 813 1.670967 GCGGCTTTACGTCTGTAGGTT 60.671 52.381 0.00 0.00 35.98 3.50
845 860 0.560688 GAGGAGGAGGATGGAGGTCT 59.439 60.000 0.00 0.00 0.00 3.85
902 930 3.465403 CTGGGCGAGTGAGAGGGG 61.465 72.222 0.00 0.00 0.00 4.79
903 931 3.465403 CCTGGGCGAGTGAGAGGG 61.465 72.222 0.00 0.00 0.00 4.30
904 932 2.681778 ACCTGGGCGAGTGAGAGG 60.682 66.667 0.00 0.00 0.00 3.69
905 933 0.394488 TAGACCTGGGCGAGTGAGAG 60.394 60.000 0.00 0.00 0.00 3.20
906 934 0.394488 CTAGACCTGGGCGAGTGAGA 60.394 60.000 0.82 0.00 0.00 3.27
907 935 1.388065 CCTAGACCTGGGCGAGTGAG 61.388 65.000 8.95 0.00 0.00 3.51
908 936 1.379977 CCTAGACCTGGGCGAGTGA 60.380 63.158 8.95 0.00 0.00 3.41
909 937 2.427245 CCCTAGACCTGGGCGAGTG 61.427 68.421 8.95 0.00 37.99 3.51
910 938 2.042843 CCCTAGACCTGGGCGAGT 60.043 66.667 8.95 0.00 37.99 4.18
916 944 2.732619 GCCGGAACCCTAGACCTGG 61.733 68.421 5.05 0.00 0.00 4.45
917 945 2.901042 GCCGGAACCCTAGACCTG 59.099 66.667 5.05 0.00 0.00 4.00
918 946 2.758737 CGCCGGAACCCTAGACCT 60.759 66.667 5.05 0.00 0.00 3.85
919 947 4.525949 GCGCCGGAACCCTAGACC 62.526 72.222 5.05 0.00 0.00 3.85
994 1261 1.066303 CTTCTTCCCCGTCATCTCTCG 59.934 57.143 0.00 0.00 0.00 4.04
1089 1356 1.063327 CGTGTAGAGCTGCGAGAGG 59.937 63.158 0.00 0.00 0.00 3.69
1176 1443 2.582052 ACCACGCCATGAAAGAAAGAA 58.418 42.857 0.00 0.00 0.00 2.52
1220 1492 1.336702 GCGCACAAATCAATCAACCCA 60.337 47.619 0.30 0.00 0.00 4.51
1223 1495 1.387756 GCAGCGCACAAATCAATCAAC 59.612 47.619 11.47 0.00 0.00 3.18
1234 1506 0.815213 AGAAACAGAAGCAGCGCACA 60.815 50.000 11.47 0.00 0.00 4.57
1245 1525 4.323417 ACACAACACAAGTGAGAAACAGA 58.677 39.130 7.28 0.00 40.16 3.41
1254 1534 2.083774 ACCACTGACACAACACAAGTG 58.916 47.619 0.00 0.00 42.56 3.16
1290 1572 2.480419 AGAGGCGAATTCAACGAAACAG 59.520 45.455 6.22 0.00 0.00 3.16
1361 1643 7.406104 AGGTTCTAGCACTAAAATTCCTCATT 58.594 34.615 0.00 0.00 0.00 2.57
1373 1655 6.351881 CCACAAAGGATAAGGTTCTAGCACTA 60.352 42.308 0.00 0.00 41.22 2.74
1470 1752 6.589523 CCAAAACTGAAACAAACTTCATCACA 59.410 34.615 0.00 0.00 34.86 3.58
1479 1761 3.938334 ACATGCCCAAAACTGAAACAAAC 59.062 39.130 0.00 0.00 0.00 2.93
1500 1782 1.886886 TGCAGGTAAACGGAGGAAAC 58.113 50.000 0.00 0.00 0.00 2.78
1683 1971 1.070577 CAGAGTTGTTGTACGCAGCAC 60.071 52.381 0.00 1.62 35.58 4.40
1716 2004 5.653255 ACCTCCATAGCCATACAAAGATT 57.347 39.130 0.00 0.00 0.00 2.40
1738 2026 1.083489 CCGTCTTCCGCTTTGCATAA 58.917 50.000 0.00 0.00 34.38 1.90
1755 2043 1.269998 CCCTATAAGCGAAGTCTCCCG 59.730 57.143 0.00 0.00 0.00 5.14
1772 2060 2.437897 CCAGAAGCAACCTGCCCT 59.562 61.111 0.00 0.00 46.52 5.19
2004 2298 6.610020 TCCACAGCCTAACATTGTAGTAGTAT 59.390 38.462 0.00 0.00 0.00 2.12
2007 2301 5.339008 TCCACAGCCTAACATTGTAGTAG 57.661 43.478 0.00 0.00 0.00 2.57
2018 2312 3.119531 CGCAATTGAATTCCACAGCCTAA 60.120 43.478 10.34 0.00 0.00 2.69
2019 2313 2.423185 CGCAATTGAATTCCACAGCCTA 59.577 45.455 10.34 0.00 0.00 3.93
2021 2315 1.067635 ACGCAATTGAATTCCACAGCC 60.068 47.619 10.34 0.00 0.00 4.85
2024 2318 7.151308 AGATTTTAACGCAATTGAATTCCACA 58.849 30.769 10.34 0.00 0.00 4.17
2048 2342 7.336427 AGTTGAGCAGATAATTCTCAGGAAAAG 59.664 37.037 0.00 0.00 38.02 2.27
2079 2373 3.368236 GTGCATCTTCTAGTGTTTCGGTC 59.632 47.826 0.00 0.00 0.00 4.79
2081 2375 2.673368 GGTGCATCTTCTAGTGTTTCGG 59.327 50.000 0.00 0.00 0.00 4.30
2120 2414 7.737869 TGGACTTAACACTAATCCAGTTTGTA 58.262 34.615 0.00 0.00 34.26 2.41
2121 2415 6.597562 TGGACTTAACACTAATCCAGTTTGT 58.402 36.000 0.00 0.00 34.26 2.83
2127 2421 6.013725 ACACATCTGGACTTAACACTAATCCA 60.014 38.462 0.00 0.00 37.11 3.41
2129 2423 7.907214 AACACATCTGGACTTAACACTAATC 57.093 36.000 0.00 0.00 0.00 1.75
2131 2425 8.402472 CAAAAACACATCTGGACTTAACACTAA 58.598 33.333 0.00 0.00 0.00 2.24
2132 2426 7.012894 CCAAAAACACATCTGGACTTAACACTA 59.987 37.037 0.00 0.00 0.00 2.74
2138 2432 5.298276 GTGACCAAAAACACATCTGGACTTA 59.702 40.000 0.00 0.00 37.05 2.24
2145 2439 6.036577 ACAAAAGTGACCAAAAACACATCT 57.963 33.333 0.00 0.00 39.18 2.90
2152 2446 9.076596 CAAAACAAAAACAAAAGTGACCAAAAA 57.923 25.926 0.00 0.00 0.00 1.94
2156 2450 5.823045 ACCAAAACAAAAACAAAAGTGACCA 59.177 32.000 0.00 0.00 0.00 4.02
2158 2452 6.720343 ACACCAAAACAAAAACAAAAGTGAC 58.280 32.000 0.00 0.00 0.00 3.67
2160 2454 8.077836 TCTACACCAAAACAAAAACAAAAGTG 57.922 30.769 0.00 0.00 0.00 3.16
2161 2455 8.664211 TTCTACACCAAAACAAAAACAAAAGT 57.336 26.923 0.00 0.00 0.00 2.66
2162 2456 7.744276 GCTTCTACACCAAAACAAAAACAAAAG 59.256 33.333 0.00 0.00 0.00 2.27
2166 2460 5.635700 GTGCTTCTACACCAAAACAAAAACA 59.364 36.000 0.00 0.00 34.35 2.83
2167 2461 5.867174 AGTGCTTCTACACCAAAACAAAAAC 59.133 36.000 0.00 0.00 41.67 2.43
2168 2462 5.866633 CAGTGCTTCTACACCAAAACAAAAA 59.133 36.000 0.00 0.00 41.67 1.94
2169 2463 5.406649 CAGTGCTTCTACACCAAAACAAAA 58.593 37.500 0.00 0.00 41.67 2.44
2170 2464 4.676723 GCAGTGCTTCTACACCAAAACAAA 60.677 41.667 8.18 0.00 41.67 2.83
2176 2470 0.764890 AGGCAGTGCTTCTACACCAA 59.235 50.000 16.11 0.00 41.67 3.67
2215 2509 5.772672 TCTGCAATGTAAACCCACTACAAAT 59.227 36.000 0.00 0.00 33.17 2.32
2219 2513 4.154195 CACTCTGCAATGTAAACCCACTAC 59.846 45.833 0.00 0.00 0.00 2.73
2255 2549 8.424918 TGCTCTTATATTTCTTTACAGAGGGAG 58.575 37.037 0.00 0.00 0.00 4.30
2256 2550 8.319057 TGCTCTTATATTTCTTTACAGAGGGA 57.681 34.615 0.00 0.00 0.00 4.20
2257 2551 9.566432 AATGCTCTTATATTTCTTTACAGAGGG 57.434 33.333 0.00 0.00 0.00 4.30
2305 2599 9.057089 CCTCCGTAAAGAAATATAAGAGCATTT 57.943 33.333 0.00 0.00 0.00 2.32
2306 2600 7.661847 CCCTCCGTAAAGAAATATAAGAGCATT 59.338 37.037 0.00 0.00 0.00 3.56
2307 2601 7.016268 TCCCTCCGTAAAGAAATATAAGAGCAT 59.984 37.037 0.00 0.00 0.00 3.79
2308 2602 6.325545 TCCCTCCGTAAAGAAATATAAGAGCA 59.674 38.462 0.00 0.00 0.00 4.26
2309 2603 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
2310 2604 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
2311 2605 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
2312 2606 8.858094 ACTACTCCCTCCGTAAAGAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
2313 2607 8.773033 ACTACTCCCTCCGTAAAGAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
2314 2608 8.773033 AACTACTCCCTCCGTAAAGAAATATA 57.227 34.615 0.00 0.00 0.00 0.86
2315 2609 7.469732 CGAACTACTCCCTCCGTAAAGAAATAT 60.470 40.741 0.00 0.00 0.00 1.28
2316 2610 6.183360 CGAACTACTCCCTCCGTAAAGAAATA 60.183 42.308 0.00 0.00 0.00 1.40
2317 2611 5.393896 CGAACTACTCCCTCCGTAAAGAAAT 60.394 44.000 0.00 0.00 0.00 2.17
2318 2612 4.082571 CGAACTACTCCCTCCGTAAAGAAA 60.083 45.833 0.00 0.00 0.00 2.52
2319 2613 3.441572 CGAACTACTCCCTCCGTAAAGAA 59.558 47.826 0.00 0.00 0.00 2.52
2320 2614 3.012518 CGAACTACTCCCTCCGTAAAGA 58.987 50.000 0.00 0.00 0.00 2.52
2321 2615 2.751806 ACGAACTACTCCCTCCGTAAAG 59.248 50.000 0.00 0.00 0.00 1.85
2322 2616 2.795329 ACGAACTACTCCCTCCGTAAA 58.205 47.619 0.00 0.00 0.00 2.01
2323 2617 2.496899 ACGAACTACTCCCTCCGTAA 57.503 50.000 0.00 0.00 0.00 3.18
2324 2618 2.496899 AACGAACTACTCCCTCCGTA 57.503 50.000 0.00 0.00 0.00 4.02
2325 2619 2.496899 TAACGAACTACTCCCTCCGT 57.503 50.000 0.00 0.00 0.00 4.69
2326 2620 2.686915 ACATAACGAACTACTCCCTCCG 59.313 50.000 0.00 0.00 0.00 4.63
2327 2621 4.732672 AACATAACGAACTACTCCCTCC 57.267 45.455 0.00 0.00 0.00 4.30
2328 2622 4.329256 GCAAACATAACGAACTACTCCCTC 59.671 45.833 0.00 0.00 0.00 4.30
2329 2623 4.251268 GCAAACATAACGAACTACTCCCT 58.749 43.478 0.00 0.00 0.00 4.20
2330 2624 3.998341 TGCAAACATAACGAACTACTCCC 59.002 43.478 0.00 0.00 0.00 4.30
2331 2625 5.178809 ACTTGCAAACATAACGAACTACTCC 59.821 40.000 0.00 0.00 0.00 3.85
2332 2626 6.224420 ACTTGCAAACATAACGAACTACTC 57.776 37.500 0.00 0.00 0.00 2.59
2333 2627 7.654520 TCTTACTTGCAAACATAACGAACTACT 59.345 33.333 0.00 0.00 0.00 2.57
2334 2628 7.790000 TCTTACTTGCAAACATAACGAACTAC 58.210 34.615 0.00 0.00 0.00 2.73
2335 2629 7.949903 TCTTACTTGCAAACATAACGAACTA 57.050 32.000 0.00 0.00 0.00 2.24
2336 2630 6.854496 TCTTACTTGCAAACATAACGAACT 57.146 33.333 0.00 0.00 0.00 3.01
2363 2657 8.896744 ACAAGACGATGATCATGACAAATAAAT 58.103 29.630 14.30 0.00 0.00 1.40
2502 2796 5.580022 AGGGAAAAGTTGCAATACCATACT 58.420 37.500 0.59 0.00 0.00 2.12
2532 2826 6.493802 GGATGTATCCAATCCTGACAGTAGTA 59.506 42.308 6.03 0.00 46.38 1.82
2605 2899 4.853924 ACTCAAAGGTAACATGCCAAAG 57.146 40.909 0.00 0.00 41.41 2.77
2608 2902 5.565509 TCATAACTCAAAGGTAACATGCCA 58.434 37.500 0.00 0.00 41.41 4.92
2609 2903 6.509418 TTCATAACTCAAAGGTAACATGCC 57.491 37.500 0.00 0.00 41.41 4.40
2638 2932 5.791336 TGCATAGTCATAGAGTTGGTAGG 57.209 43.478 0.00 0.00 0.00 3.18
2677 2971 4.523083 ACATTGTGAAGGTACTGTGTGTT 58.477 39.130 0.00 0.00 40.86 3.32
2688 2982 1.080569 GCGGCCAACATTGTGAAGG 60.081 57.895 2.24 0.00 0.00 3.46
2722 3016 6.522625 TGACACAAATTTTCTTCTGTTCCA 57.477 33.333 0.00 0.00 0.00 3.53
2751 3047 7.013274 GGCTATTCATTACATACAAAAGCCTGA 59.987 37.037 0.00 0.00 41.96 3.86
2773 3069 0.322098 CCAATGACCCAACACGGCTA 60.322 55.000 0.00 0.00 0.00 3.93
2817 3113 1.001641 ACCTCAAGACATGGCTGCC 60.002 57.895 12.87 12.87 0.00 4.85
2829 3125 3.840078 TCACTGATTCCTCATCACCTCAA 59.160 43.478 0.00 0.00 36.94 3.02
2850 3146 5.189145 TCCCCTGTATTCTCCTACAAACTTC 59.811 44.000 0.00 0.00 31.50 3.01
3012 3345 6.926272 AGCAGTTAGGATAAGAGAATAAAGCG 59.074 38.462 0.00 0.00 0.00 4.68
3018 3351 5.688766 GCCCAAGCAGTTAGGATAAGAGAAT 60.689 44.000 0.00 0.00 39.53 2.40
3070 3403 5.468746 GGACCTTAATATAGCGAACATGCAA 59.531 40.000 0.00 0.00 37.31 4.08
3075 3408 4.406326 TGTGGGACCTTAATATAGCGAACA 59.594 41.667 0.00 0.00 0.00 3.18
3117 3462 6.613679 TCACTATGTCATGTGGGACCTTAATA 59.386 38.462 12.51 0.00 36.97 0.98
3118 3463 5.428457 TCACTATGTCATGTGGGACCTTAAT 59.572 40.000 12.51 0.00 36.97 1.40
3119 3464 4.780554 TCACTATGTCATGTGGGACCTTAA 59.219 41.667 12.51 0.00 36.97 1.85
3120 3465 4.358214 TCACTATGTCATGTGGGACCTTA 58.642 43.478 12.51 0.00 36.97 2.69
3121 3466 3.181329 TCACTATGTCATGTGGGACCTT 58.819 45.455 12.51 0.00 36.97 3.50
3122 3467 2.832838 TCACTATGTCATGTGGGACCT 58.167 47.619 12.51 0.00 36.97 3.85
3123 3468 3.845781 ATCACTATGTCATGTGGGACC 57.154 47.619 12.51 0.00 36.97 4.46
3124 3469 5.028549 AGAATCACTATGTCATGTGGGAC 57.971 43.478 12.51 0.00 38.29 4.46
3125 3470 6.040955 GTCTAGAATCACTATGTCATGTGGGA 59.959 42.308 0.00 5.64 35.15 4.37
3126 3471 6.183360 TGTCTAGAATCACTATGTCATGTGGG 60.183 42.308 0.00 1.12 35.15 4.61
3127 3472 6.809869 TGTCTAGAATCACTATGTCATGTGG 58.190 40.000 0.00 0.23 35.15 4.17
3128 3473 8.762426 CATTGTCTAGAATCACTATGTCATGTG 58.238 37.037 0.00 2.70 35.68 3.21
3129 3474 7.930325 CCATTGTCTAGAATCACTATGTCATGT 59.070 37.037 0.00 0.00 0.00 3.21
3130 3475 7.930325 ACCATTGTCTAGAATCACTATGTCATG 59.070 37.037 0.00 0.00 0.00 3.07
3131 3476 8.027524 ACCATTGTCTAGAATCACTATGTCAT 57.972 34.615 0.00 0.00 0.00 3.06
3132 3477 7.423844 ACCATTGTCTAGAATCACTATGTCA 57.576 36.000 0.00 0.00 0.00 3.58
3135 3480 9.561270 CGTATACCATTGTCTAGAATCACTATG 57.439 37.037 0.00 0.00 0.00 2.23
3136 3481 9.298250 ACGTATACCATTGTCTAGAATCACTAT 57.702 33.333 0.00 0.00 0.00 2.12
3137 3482 8.687292 ACGTATACCATTGTCTAGAATCACTA 57.313 34.615 0.00 0.00 0.00 2.74
3138 3483 7.255520 GGACGTATACCATTGTCTAGAATCACT 60.256 40.741 0.00 0.00 0.00 3.41
3139 3484 6.862090 GGACGTATACCATTGTCTAGAATCAC 59.138 42.308 0.00 0.00 0.00 3.06
3140 3485 6.015688 GGGACGTATACCATTGTCTAGAATCA 60.016 42.308 0.00 0.00 0.00 2.57
3141 3486 6.015688 TGGGACGTATACCATTGTCTAGAATC 60.016 42.308 0.00 0.00 31.70 2.52
3142 3487 5.836898 TGGGACGTATACCATTGTCTAGAAT 59.163 40.000 0.00 0.00 31.70 2.40
3143 3488 5.202765 TGGGACGTATACCATTGTCTAGAA 58.797 41.667 0.00 0.00 31.70 2.10
3144 3489 4.795469 TGGGACGTATACCATTGTCTAGA 58.205 43.478 2.27 0.00 31.70 2.43
3145 3490 5.068723 ACTTGGGACGTATACCATTGTCTAG 59.931 44.000 6.90 3.75 39.25 2.43
3146 3491 4.957954 ACTTGGGACGTATACCATTGTCTA 59.042 41.667 6.90 0.00 39.25 2.59
3147 3492 3.773119 ACTTGGGACGTATACCATTGTCT 59.227 43.478 6.90 0.00 39.25 3.41
3148 3493 3.869246 CACTTGGGACGTATACCATTGTC 59.131 47.826 6.90 0.00 39.25 3.18
3149 3494 3.262405 ACACTTGGGACGTATACCATTGT 59.738 43.478 6.90 9.92 39.25 2.71
3153 3498 2.898612 TCAACACTTGGGACGTATACCA 59.101 45.455 2.27 2.27 36.84 3.25
3179 3524 2.006888 CCACGCGTTGACAGGATTAAT 58.993 47.619 10.22 0.00 0.00 1.40
3189 3534 0.036858 TGATGGATTCCACGCGTTGA 60.037 50.000 10.22 9.65 35.80 3.18
3209 3554 3.274288 GCTTGCTAGCAGGTACAATTCT 58.726 45.455 25.66 0.00 46.95 2.40
3290 3636 5.002516 AGAAGAAAGACAGATTTCTGCCAG 58.997 41.667 7.48 0.00 46.32 4.85
3349 3698 1.897802 AGCTTTTCCTGCTCAAATGGG 59.102 47.619 0.00 0.00 35.67 4.00
3420 3769 1.401670 GGACGTGCGAGGCTATATCAG 60.402 57.143 0.00 0.00 0.00 2.90
3461 3810 4.349636 TCCCTTTCAACATACAAGACAGGA 59.650 41.667 0.00 0.00 32.29 3.86
3470 3819 6.575162 ATGAACAGTTCCCTTTCAACATAC 57.425 37.500 10.93 0.00 33.13 2.39
3474 3823 9.974980 TTTAATTATGAACAGTTCCCTTTCAAC 57.025 29.630 10.93 0.00 33.13 3.18
3547 3898 6.155221 TGCCATACTATTCAGAGTTTCAGACT 59.845 38.462 0.00 0.00 42.70 3.24
3555 3906 7.383102 CAAAACTTGCCATACTATTCAGAGT 57.617 36.000 0.00 0.00 0.00 3.24
3626 3977 3.452627 ACAGGATCAGTGAGGATGGTAAC 59.547 47.826 0.00 0.00 0.00 2.50
3658 4018 5.488919 AGAGGTATGGATTGACAAAGGAAGA 59.511 40.000 0.00 0.00 0.00 2.87
3667 4027 4.899352 ATGGCTAGAGGTATGGATTGAC 57.101 45.455 0.00 0.00 0.00 3.18
3709 4069 3.691609 GGAGAAGGATAAAAGTGGTGCAG 59.308 47.826 0.00 0.00 0.00 4.41
3760 4120 7.268659 GCTAGACATACATACAGATCGTAAACG 59.731 40.741 0.00 0.00 41.45 3.60
3766 4126 6.846350 TCATGCTAGACATACATACAGATCG 58.154 40.000 0.00 0.00 36.64 3.69
3778 4138 6.496218 TCCATACTGAATCTCATGCTAGACAT 59.504 38.462 0.00 0.00 40.66 3.06
3857 4217 2.633860 GGGCATATGCACAGTAGCC 58.366 57.895 28.07 14.65 45.57 3.93
3890 4250 5.063180 CAAATAAGCTTGCAGATGGTTGA 57.937 39.130 9.86 0.00 0.00 3.18
3962 4322 1.819632 GGGGCTGGATAGTGCGTTG 60.820 63.158 0.00 0.00 0.00 4.10
3995 4355 3.497405 CCTGATCCAGATGGTATGGTTGG 60.497 52.174 0.00 0.00 39.01 3.77
4019 4379 1.097547 CAAAGTAGCCTGCATCCCCG 61.098 60.000 0.00 0.00 0.00 5.73
4061 4421 1.002201 TCGTTTGAAGCCGTGGGATTA 59.998 47.619 0.00 0.00 28.48 1.75
4142 4502 1.269958 TCCATCTCTGTGGTCCTGTG 58.730 55.000 0.00 0.00 40.27 3.66
4143 4503 1.905215 CTTCCATCTCTGTGGTCCTGT 59.095 52.381 0.00 0.00 40.27 4.00
4144 4504 2.182827 TCTTCCATCTCTGTGGTCCTG 58.817 52.381 0.00 0.00 40.27 3.86
4145 4505 2.630889 TCTTCCATCTCTGTGGTCCT 57.369 50.000 0.00 0.00 40.27 3.85
4146 4506 2.834549 TCTTCTTCCATCTCTGTGGTCC 59.165 50.000 0.00 0.00 40.27 4.46
4147 4507 4.543590 TTCTTCTTCCATCTCTGTGGTC 57.456 45.455 0.00 0.00 40.27 4.02
4148 4508 5.396213 GCTATTCTTCTTCCATCTCTGTGGT 60.396 44.000 0.00 0.00 40.27 4.16
4149 4509 5.055812 GCTATTCTTCTTCCATCTCTGTGG 58.944 45.833 0.00 0.00 40.76 4.17
4375 4737 0.175531 AAACACAGGTGCACAAAGGC 59.824 50.000 20.43 0.00 0.00 4.35
4531 4893 3.884895 CATAGATTGGGTTGGTGCACTA 58.115 45.455 17.98 8.10 0.00 2.74
4585 4947 0.400213 TGACCCGTTGCCTTCTCATT 59.600 50.000 0.00 0.00 0.00 2.57
4655 5017 0.676782 GGATGTAAAGTGCAGGCCGT 60.677 55.000 0.00 0.00 0.00 5.68
4705 5067 6.970043 CCATCTTTGTGTTCGAGTTACAAAAA 59.030 34.615 18.23 12.20 41.91 1.94
4710 5072 3.120304 GGCCATCTTTGTGTTCGAGTTAC 60.120 47.826 0.00 0.00 0.00 2.50
4712 5074 1.880027 GGCCATCTTTGTGTTCGAGTT 59.120 47.619 0.00 0.00 0.00 3.01
4713 5075 1.202758 TGGCCATCTTTGTGTTCGAGT 60.203 47.619 0.00 0.00 0.00 4.18
4714 5076 1.522668 TGGCCATCTTTGTGTTCGAG 58.477 50.000 0.00 0.00 0.00 4.04
4715 5077 2.198827 ATGGCCATCTTTGTGTTCGA 57.801 45.000 14.09 0.00 0.00 3.71
4716 5078 5.947228 ATATATGGCCATCTTTGTGTTCG 57.053 39.130 24.80 0.00 0.00 3.95
4717 5079 8.196771 TCAAAATATATGGCCATCTTTGTGTTC 58.803 33.333 24.80 0.00 0.00 3.18
4789 5157 8.015087 TGATCTTGTTTCAAATATGTCGTCAAC 58.985 33.333 0.00 0.00 0.00 3.18
4903 5271 1.227249 CCTGACTCTCCCTCTCCCTA 58.773 60.000 0.00 0.00 0.00 3.53
4918 5286 7.305813 TGTCTTGTAAGTTATGTAACCCTGA 57.694 36.000 0.00 0.00 36.88 3.86
5042 5411 9.367444 ACCATACGTCTAAATCAGTTTTTCTAG 57.633 33.333 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.