AutoCloner

Multiple sequence alignment - TraesCS5B01G186900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G186900	chr5B	100.000	2579	0	0	1	2579	339101989	339099411	0.000000e+00	4763
1	TraesCS5B01G186900	chr5D	97.580	1157	20	7	999	2154	298123720	298124869	0.000000e+00	1975
2	TraesCS5B01G186900	chr5D	97.688	346	8	0	2234	2579	298124870	298125215	1.710000e-166	595
3	TraesCS5B01G186900	chr5D	93.878	98	4	2	2145	2242	109535532	109535627	2.070000e-31	147
4	TraesCS5B01G186900	chr5D	93.878	98	4	2	2145	2242	112842918	112843013	2.070000e-31	147
5	TraesCS5B01G186900	chr7A	87.699	1317	116	26	799	2094	63399015	63397724	0.000000e+00	1493
6	TraesCS5B01G186900	chr7A	84.989	1399	151	42	775	2144	63427863	63426495	0.000000e+00	1365
7	TraesCS5B01G186900	chr7A	91.774	778	57	5	1	775	724017446	724016673	0.000000e+00	1075
8	TraesCS5B01G186900	chr7A	91.601	631	46	2	775	1404	63343426	63344050	0.000000e+00	865
9	TraesCS5B01G186900	chr7A	93.033	488	23	8	995	1471	63117651	63118138	0.000000e+00	702
10	TraesCS5B01G186900	chr7A	93.432	472	27	3	302	771	106298591	106299060	0.000000e+00	697
11	TraesCS5B01G186900	chr7A	83.473	714	76	25	1400	2094	63356057	63356747	6.060000e-176	627
12	TraesCS5B01G186900	chr7A	96.023	352	12	2	424	774	137822753	137823103	2.880000e-159	571
13	TraesCS5B01G186900	chr7A	91.429	105	8	1	2140	2243	611771762	611771866	2.680000e-30	143
14	TraesCS5B01G186900	chr7A	94.186	86	4	1	1	86	106298371	106298455	2.080000e-26	130
15	TraesCS5B01G186900	chr7B	96.636	773	26	0	1	773	22078919	22078147	0.000000e+00	1284
16	TraesCS5B01G186900	chr7B	81.818	1023	99	47	897	1861	63934815	63935808	0.000000e+00	778
17	TraesCS5B01G186900	chr7B	81.926	758	129	7	19	771	516311707	516312461	3.620000e-178	634
18	TraesCS5B01G186900	chr7D	89.903	931	66	18	775	1687	58863911	58862991	0.000000e+00	1173
19	TraesCS5B01G186900	chr7D	92.448	715	50	3	1	712	628139363	628138650	0.000000e+00	1018
20	TraesCS5B01G186900	chr7D	83.733	1125	104	46	1064	2144	58793630	58794719	0.000000e+00	990
21	TraesCS5B01G186900	chr7D	85.694	713	51	31	780	1471	58768158	58768840	0.000000e+00	704
22	TraesCS5B01G186900	chr7D	77.326	344	45	13	2242	2578	105383503	105383820	3.410000e-39	172
23	TraesCS5B01G186900	chr7D	78.676	272	43	10	2214	2484	58821287	58821544	1.590000e-37	167
24	TraesCS5B01G186900	chr2D	92.386	788	49	8	1	777	51415974	51416761	0.000000e+00	1112
25	TraesCS5B01G186900	chr3D	88.098	773	90	2	1	772	230620535	230619764	0.000000e+00	917
26	TraesCS5B01G186900	chr3D	92.079	101	4	4	2138	2238	303788553	303788457	3.460000e-29	139
27	TraesCS5B01G186900	chr6D	88.083	772	89	3	1	771	377168366	377167597	0.000000e+00	913
28	TraesCS5B01G186900	chr6D	95.604	91	3	1	2150	2240	62245314	62245403	7.440000e-31	145
29	TraesCS5B01G186900	chr6D	94.444	90	4	1	2149	2238	353105755	353105843	1.240000e-28	137
30	TraesCS5B01G186900	chr4B	92.381	105	7	1	2140	2243	438099347	438099451	5.750000e-32	148
31	TraesCS5B01G186900	chr2A	92.381	105	7	1	2140	2243	115434404	115434508	5.750000e-32	148
32	TraesCS5B01G186900	chr1B	91.509	106	7	2	2140	2243	93954284	93954389	7.440000e-31	145

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G186900	chr5B	339099411	339101989	2578	True	4763.0	4763	100.000	1	2579	1	chr5B.!!$R1	2578
1	TraesCS5B01G186900	chr5D	298123720	298125215	1495	False	1285.0	1975	97.634	999	2579	2	chr5D.!!$F3	1580
2	TraesCS5B01G186900	chr7A	63397724	63399015	1291	True	1493.0	1493	87.699	799	2094	1	chr7A.!!$R1	1295
3	TraesCS5B01G186900	chr7A	63426495	63427863	1368	True	1365.0	1365	84.989	775	2144	1	chr7A.!!$R2	1369
4	TraesCS5B01G186900	chr7A	724016673	724017446	773	True	1075.0	1075	91.774	1	775	1	chr7A.!!$R3	774
5	TraesCS5B01G186900	chr7A	63343426	63344050	624	False	865.0	865	91.601	775	1404	1	chr7A.!!$F2	629
6	TraesCS5B01G186900	chr7A	63356057	63356747	690	False	627.0	627	83.473	1400	2094	1	chr7A.!!$F3	694
7	TraesCS5B01G186900	chr7A	106298371	106299060	689	False	413.5	697	93.809	1	771	2	chr7A.!!$F6	770
8	TraesCS5B01G186900	chr7B	22078147	22078919	772	True	1284.0	1284	96.636	1	773	1	chr7B.!!$R1	772
9	TraesCS5B01G186900	chr7B	63934815	63935808	993	False	778.0	778	81.818	897	1861	1	chr7B.!!$F1	964
10	TraesCS5B01G186900	chr7B	516311707	516312461	754	False	634.0	634	81.926	19	771	1	chr7B.!!$F2	752
11	TraesCS5B01G186900	chr7D	58862991	58863911	920	True	1173.0	1173	89.903	775	1687	1	chr7D.!!$R1	912
12	TraesCS5B01G186900	chr7D	628138650	628139363	713	True	1018.0	1018	92.448	1	712	1	chr7D.!!$R2	711
13	TraesCS5B01G186900	chr7D	58793630	58794719	1089	False	990.0	990	83.733	1064	2144	1	chr7D.!!$F2	1080
14	TraesCS5B01G186900	chr7D	58768158	58768840	682	False	704.0	704	85.694	780	1471	1	chr7D.!!$F1	691
15	TraesCS5B01G186900	chr2D	51415974	51416761	787	False	1112.0	1112	92.386	1	777	1	chr2D.!!$F1	776
16	TraesCS5B01G186900	chr3D	230619764	230620535	771	True	917.0	917	88.098	1	772	1	chr3D.!!$R1	771
17	TraesCS5B01G186900	chr6D	377167597	377168366	769	True	913.0	913	88.083	1	771	1	chr6D.!!$R1	770

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
867	883	0.03582	TACCCATCCAACGCTCCAAC	60.036	55.0	0.0	0.0	0.0	3.77	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2373	2523	0.961019	GATGTTTGCAAGGTGAGGCA	59.039	50.0	0.0	0.0	38.46	4.75	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
209	214	9.337396	TCATGAAGAGCAAAAAGACTACTAAAA	57.663	29.630	0.00	0.00	0.00	1.52
260	265	1.000717	CTCGACCGCCAAATGGTTTTT	60.001	47.619	0.71	0.00	40.63	1.94
294	299	2.426024	CTGATGCATCTTTTCACAGGGG	59.574	50.000	26.32	0.00	0.00	4.79
344	349	3.726557	TCAGAGATGACCAAGGCAAAT	57.273	42.857	0.00	0.00	0.00	2.32
371	376	4.659172	CAGGGGCCGGCAAACTGA	62.659	66.667	29.37	0.00	0.00	3.41
483	496	1.230324	GAAACTGACTCCACACAGCC	58.770	55.000	0.00	0.00	37.61	4.85
570	583	2.612285	TTCCAAATGCATGTGGGGTA	57.388	45.000	31.53	16.83	35.46	3.69
573	586	3.448934	TCCAAATGCATGTGGGGTATTT	58.551	40.909	31.53	3.18	35.46	1.40
617	630	2.969950	CCTCGGGATTGTAATAGGGTGA	59.030	50.000	0.00	0.00	0.00	4.02
673	687	4.371786	GAGTTGATGTGTGTGAGACTTGA	58.628	43.478	0.00	0.00	0.00	3.02
867	883	0.035820	TACCCATCCAACGCTCCAAC	60.036	55.000	0.00	0.00	0.00	3.77
891	907	4.421554	CTCCCTCCTCCAGCCCCA	62.422	72.222	0.00	0.00	0.00	4.96
946	969	1.933307	AAAATTCCCGATCCCCCGCT	61.933	55.000	0.00	0.00	0.00	5.52
1298	1350	0.832135	TCGCCCAGGACTTCAAGACT	60.832	55.000	0.00	0.00	0.00	3.24
1655	1746	9.719355	TTACTGCTTGATTACTCTGTGATTTTA	57.281	29.630	0.00	0.00	0.00	1.52
1708	1813	3.947834	CTCCAGTGATGGGGTTGAATAAC	59.052	47.826	0.00	0.00	36.04	1.89
1838	1961	0.178981	TTGGGCTTTCAGCTCTGCTT	60.179	50.000	0.00	0.00	43.70	3.91
1861	1984	9.248291	GCTTGAAGTGATTCTGAATTTTGTTTA	57.752	29.630	4.11	0.00	0.00	2.01
1970	2102	7.246171	AGTATAACCATCACAGAACTCACTT	57.754	36.000	0.00	0.00	0.00	3.16
1998	2130	1.852280	GCAAACGAAAGCTGAACAACC	59.148	47.619	0.00	0.00	0.00	3.77
1999	2131	2.733858	GCAAACGAAAGCTGAACAACCA	60.734	45.455	0.00	0.00	0.00	3.67
2066	2209	2.333938	GGTGTGCTTGCAGTGCAG	59.666	61.111	18.81	13.36	40.61	4.41
2149	2299	6.482308	GCCATGATTTCTTACAGGTTATACGT	59.518	38.462	0.00	0.00	0.00	3.57
2164	2314	2.604046	TACGTAGTACTCCCTCCGTC	57.396	55.000	0.00	0.00	45.11	4.79
2165	2315	0.107459	ACGTAGTACTCCCTCCGTCC	60.107	60.000	0.00	0.00	41.94	4.79
2166	2316	0.817229	CGTAGTACTCCCTCCGTCCC	60.817	65.000	0.00	0.00	0.00	4.46
2167	2317	0.257039	GTAGTACTCCCTCCGTCCCA	59.743	60.000	0.00	0.00	0.00	4.37
2168	2318	1.133544	GTAGTACTCCCTCCGTCCCAT	60.134	57.143	0.00	0.00	0.00	4.00
2169	2319	1.229131	AGTACTCCCTCCGTCCCATA	58.771	55.000	0.00	0.00	0.00	2.74
2170	2320	1.572415	AGTACTCCCTCCGTCCCATAA	59.428	52.381	0.00	0.00	0.00	1.90
2171	2321	2.179424	AGTACTCCCTCCGTCCCATAAT	59.821	50.000	0.00	0.00	0.00	1.28
2172	2322	3.400322	AGTACTCCCTCCGTCCCATAATA	59.600	47.826	0.00	0.00	0.00	0.98
2173	2323	3.562108	ACTCCCTCCGTCCCATAATAT	57.438	47.619	0.00	0.00	0.00	1.28
2174	2324	4.687262	ACTCCCTCCGTCCCATAATATA	57.313	45.455	0.00	0.00	0.00	0.86
2175	2325	5.019657	ACTCCCTCCGTCCCATAATATAA	57.980	43.478	0.00	0.00	0.00	0.98
2176	2326	5.024118	ACTCCCTCCGTCCCATAATATAAG	58.976	45.833	0.00	0.00	0.00	1.73
2177	2327	5.222484	ACTCCCTCCGTCCCATAATATAAGA	60.222	44.000	0.00	0.00	0.00	2.10
2178	2328	5.269991	TCCCTCCGTCCCATAATATAAGAG	58.730	45.833	0.00	0.00	0.00	2.85
2179	2329	4.141914	CCCTCCGTCCCATAATATAAGAGC	60.142	50.000	0.00	0.00	0.00	4.09
2180	2330	4.440250	CCTCCGTCCCATAATATAAGAGCG	60.440	50.000	0.00	0.00	0.00	5.03
2181	2331	4.084287	TCCGTCCCATAATATAAGAGCGT	58.916	43.478	0.00	0.00	0.00	5.07
2182	2332	4.525487	TCCGTCCCATAATATAAGAGCGTT	59.475	41.667	0.00	0.00	0.00	4.84
2183	2333	5.011329	TCCGTCCCATAATATAAGAGCGTTT	59.989	40.000	0.00	0.00	0.00	3.60
2184	2334	5.699458	CCGTCCCATAATATAAGAGCGTTTT	59.301	40.000	0.00	0.00	0.00	2.43
2185	2335	6.204108	CCGTCCCATAATATAAGAGCGTTTTT	59.796	38.462	0.00	0.00	0.00	1.94
2229	2379	6.764877	AAACGCTCTTATATTATGTGACGG	57.235	37.500	0.00	0.00	0.00	4.79
2230	2380	5.700722	ACGCTCTTATATTATGTGACGGA	57.299	39.130	0.00	0.00	0.00	4.69
2231	2381	5.700846	ACGCTCTTATATTATGTGACGGAG	58.299	41.667	0.00	0.00	0.00	4.63
2232	2382	5.096169	CGCTCTTATATTATGTGACGGAGG	58.904	45.833	0.00	0.00	0.00	4.30
2249	2399	3.536570	GGAGGGAGTACAATTCAAGCTC	58.463	50.000	0.00	0.00	0.00	4.09
2524	2674	2.998279	GCTGTGACCATTGCCAGGC	61.998	63.158	3.66	3.66	0.00	4.85
2549	2699	1.381928	CGGCATGAGCAGGAGCAAAT	61.382	55.000	0.00	0.00	45.49	2.32
2571	2721	1.702957	TCCTCGGAAATCACCAAGGTT	59.297	47.619	0.00	0.00	0.00	3.50
2572	2722	2.907696	TCCTCGGAAATCACCAAGGTTA	59.092	45.455	0.00	0.00	0.00	2.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
209	214	0.251474	TCCATCTGCTGCTTTTGCCT	60.251	50.000	0.00	0.00	46.87	4.75
294	299	4.699522	AGCCGCCGGAGTTGGTTC	62.700	66.667	7.68	0.00	0.00	3.62
483	496	0.534412	AGAGTTCACTGCCCTCATCG	59.466	55.000	0.00	0.00	0.00	3.84
570	583	6.238648	GCAAGACACAACACTACTACCAAAAT	60.239	38.462	0.00	0.00	0.00	1.82
573	586	4.124238	GCAAGACACAACACTACTACCAA	58.876	43.478	0.00	0.00	0.00	3.67
617	630	4.949238	TCCATATGCAGCTAAAACATGTGT	59.051	37.500	0.00	0.00	32.79	3.72
827	842	3.436243	AGAGAATGGACGGATAGGATCC	58.564	50.000	2.48	2.48	46.22	3.36
833	849	3.605726	TGGGTAGAGAATGGACGGATA	57.394	47.619	0.00	0.00	0.00	2.59
867	883	0.471591	CTGGAGGAGGGAGATGAGGG	60.472	65.000	0.00	0.00	0.00	4.30
923	945	0.181824	GGGGATCGGGAATTTTCGGA	59.818	55.000	2.40	0.00	0.00	4.55
946	969	0.326238	AATAGGGGAGAAGGGCGTGA	60.326	55.000	0.00	0.00	0.00	4.35
1298	1350	0.191064	AGGACTGGAACCTCAGGTCA	59.809	55.000	0.00	0.00	38.98	4.02
1655	1746	4.015872	ACATCCGACAAAACACCATAGT	57.984	40.909	0.00	0.00	0.00	2.12
1708	1813	7.546358	TGGCAAAGTAATAAAATCCATGTGAG	58.454	34.615	0.00	0.00	0.00	3.51
1838	1961	9.195411	GCATAAACAAAATTCAGAATCACTTCA	57.805	29.630	0.00	0.00	33.56	3.02
1861	1984	3.053395	AGGTTATCAACATCCACCAGCAT	60.053	43.478	0.00	0.00	0.00	3.79
1970	2102	7.142021	TGTTCAGCTTTCGTTTGCAAATATTA	58.858	30.769	16.21	1.27	0.00	0.98
1998	2130	3.126858	AGCATGCGTACTAACCACATTTG	59.873	43.478	13.01	0.00	0.00	2.32
1999	2131	3.343617	AGCATGCGTACTAACCACATTT	58.656	40.909	13.01	0.00	0.00	2.32
2010	2146	2.073816	ACAGGTTGTAAGCATGCGTAC	58.926	47.619	29.64	29.64	0.00	3.67
2011	2147	2.028476	AGACAGGTTGTAAGCATGCGTA	60.028	45.455	13.01	11.12	0.00	4.42
2012	2148	1.156736	GACAGGTTGTAAGCATGCGT	58.843	50.000	13.01	12.35	0.00	5.24
2013	2149	1.442769	AGACAGGTTGTAAGCATGCG	58.557	50.000	13.01	0.00	0.00	4.73
2014	2150	6.260936	ACATTATAGACAGGTTGTAAGCATGC	59.739	38.462	10.51	10.51	0.00	4.06
2015	2151	7.792374	ACATTATAGACAGGTTGTAAGCATG	57.208	36.000	0.00	0.00	0.00	4.06
2017	2153	9.727859	TTAAACATTATAGACAGGTTGTAAGCA	57.272	29.630	0.00	0.00	0.00	3.91
2066	2209	5.665459	AGATAACACACCTAGCATCTCAAC	58.335	41.667	0.00	0.00	0.00	3.18
2149	2299	1.229131	ATGGGACGGAGGGAGTACTA	58.771	55.000	0.00	0.00	0.00	1.82
2154	2304	5.269991	TCTTATATTATGGGACGGAGGGAG	58.730	45.833	0.00	0.00	0.00	4.30
2155	2305	5.269991	CTCTTATATTATGGGACGGAGGGA	58.730	45.833	0.00	0.00	0.00	4.20
2156	2306	4.141914	GCTCTTATATTATGGGACGGAGGG	60.142	50.000	0.00	0.00	0.00	4.30
2157	2307	4.440250	CGCTCTTATATTATGGGACGGAGG	60.440	50.000	0.00	0.00	0.00	4.30
2158	2308	4.158025	ACGCTCTTATATTATGGGACGGAG	59.842	45.833	0.00	0.00	0.00	4.63
2159	2309	4.084287	ACGCTCTTATATTATGGGACGGA	58.916	43.478	0.00	0.00	0.00	4.69
2160	2310	4.451629	ACGCTCTTATATTATGGGACGG	57.548	45.455	0.00	0.00	0.00	4.79
2161	2311	6.780706	AAAACGCTCTTATATTATGGGACG	57.219	37.500	0.00	0.00	0.00	4.79
2204	2354	7.493320	TCCGTCACATAATATAAGAGCGTTTTT	59.507	33.333	0.00	0.00	0.00	1.94
2205	2355	6.982141	TCCGTCACATAATATAAGAGCGTTTT	59.018	34.615	0.00	0.00	0.00	2.43
2206	2356	6.509656	TCCGTCACATAATATAAGAGCGTTT	58.490	36.000	0.00	0.00	0.00	3.60
2207	2357	6.080648	TCCGTCACATAATATAAGAGCGTT	57.919	37.500	0.00	0.00	0.00	4.84
2208	2358	5.335740	CCTCCGTCACATAATATAAGAGCGT	60.336	44.000	0.00	0.00	0.00	5.07
2209	2359	5.096169	CCTCCGTCACATAATATAAGAGCG	58.904	45.833	0.00	0.00	0.00	5.03
2210	2360	5.185249	TCCCTCCGTCACATAATATAAGAGC	59.815	44.000	0.00	0.00	0.00	4.09
2211	2361	6.434652	ACTCCCTCCGTCACATAATATAAGAG	59.565	42.308	0.00	0.00	0.00	2.85
2212	2362	6.312529	ACTCCCTCCGTCACATAATATAAGA	58.687	40.000	0.00	0.00	0.00	2.10
2213	2363	6.591750	ACTCCCTCCGTCACATAATATAAG	57.408	41.667	0.00	0.00	0.00	1.73
2214	2364	7.005902	TGTACTCCCTCCGTCACATAATATAA	58.994	38.462	0.00	0.00	0.00	0.98
2215	2365	6.545567	TGTACTCCCTCCGTCACATAATATA	58.454	40.000	0.00	0.00	0.00	0.86
2216	2366	5.391256	TGTACTCCCTCCGTCACATAATAT	58.609	41.667	0.00	0.00	0.00	1.28
2217	2367	4.795469	TGTACTCCCTCCGTCACATAATA	58.205	43.478	0.00	0.00	0.00	0.98
2218	2368	3.638860	TGTACTCCCTCCGTCACATAAT	58.361	45.455	0.00	0.00	0.00	1.28
2219	2369	3.090210	TGTACTCCCTCCGTCACATAA	57.910	47.619	0.00	0.00	0.00	1.90
2220	2370	2.812836	TGTACTCCCTCCGTCACATA	57.187	50.000	0.00	0.00	0.00	2.29
2221	2371	1.933021	TTGTACTCCCTCCGTCACAT	58.067	50.000	0.00	0.00	0.00	3.21
2222	2372	1.933021	ATTGTACTCCCTCCGTCACA	58.067	50.000	0.00	0.00	0.00	3.58
2223	2373	2.232941	TGAATTGTACTCCCTCCGTCAC	59.767	50.000	0.00	0.00	0.00	3.67
2224	2374	2.531771	TGAATTGTACTCCCTCCGTCA	58.468	47.619	0.00	0.00	0.00	4.35
2225	2375	3.522553	CTTGAATTGTACTCCCTCCGTC	58.477	50.000	0.00	0.00	0.00	4.79
2226	2376	2.354805	GCTTGAATTGTACTCCCTCCGT	60.355	50.000	0.00	0.00	0.00	4.69
2227	2377	2.093447	AGCTTGAATTGTACTCCCTCCG	60.093	50.000	0.00	0.00	0.00	4.63
2228	2378	3.055094	TGAGCTTGAATTGTACTCCCTCC	60.055	47.826	0.00	0.00	0.00	4.30
2229	2379	4.187694	CTGAGCTTGAATTGTACTCCCTC	58.812	47.826	0.00	0.00	0.00	4.30
2230	2380	3.054802	CCTGAGCTTGAATTGTACTCCCT	60.055	47.826	0.00	0.00	0.00	4.20
2231	2381	3.274288	CCTGAGCTTGAATTGTACTCCC	58.726	50.000	0.00	0.00	0.00	4.30
2232	2382	3.686726	CACCTGAGCTTGAATTGTACTCC	59.313	47.826	0.00	0.00	0.00	3.85
2249	2399	2.306847	GCCAAATACCCATACCACCTG	58.693	52.381	0.00	0.00	0.00	4.00
2336	2486	8.120465	GGTGTCCTAAATTTACGTGATACAATG	58.880	37.037	0.00	0.00	0.00	2.82
2373	2523	0.961019	GATGTTTGCAAGGTGAGGCA	59.039	50.000	0.00	0.00	38.46	4.75
2524	2674	2.326897	CTGCTCATGCCGCATTCG	59.673	61.111	2.16	0.00	36.70	3.34
2533	2683	2.758979	AGGAAATTTGCTCCTGCTCATG	59.241	45.455	6.36	0.00	41.96	3.07

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.