Multiple sequence alignment - TraesCS5B01G186600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G186600 chr5B 100.000 4045 0 0 1 4045 338946183 338950227 0.000000e+00 7470
1 TraesCS5B01G186600 chr5A 96.862 3250 62 12 1 3244 400787861 400784646 0.000000e+00 5400
2 TraesCS5B01G186600 chr5A 89.415 718 42 24 3344 4045 400780099 400779400 0.000000e+00 874
3 TraesCS5B01G186600 chr5D 89.541 2113 186 26 1701 3794 298286601 298284505 0.000000e+00 2645
4 TraesCS5B01G186600 chr5D 88.319 1678 170 17 18 1687 298288309 298286650 0.000000e+00 1989
5 TraesCS5B01G186600 chr5D 90.171 234 8 4 3827 4045 298284510 298284277 1.420000e-74 291
6 TraesCS5B01G186600 chr7B 98.246 57 1 0 3348 3404 27281300 27281356 2.570000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G186600 chr5B 338946183 338950227 4044 False 7470.000000 7470 100.000000 1 4045 1 chr5B.!!$F1 4044
1 TraesCS5B01G186600 chr5A 400784646 400787861 3215 True 5400.000000 5400 96.862000 1 3244 1 chr5A.!!$R2 3243
2 TraesCS5B01G186600 chr5A 400779400 400780099 699 True 874.000000 874 89.415000 3344 4045 1 chr5A.!!$R1 701
3 TraesCS5B01G186600 chr5D 298284277 298288309 4032 True 1641.666667 2645 89.343667 18 4045 3 chr5D.!!$R1 4027

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
894 901 2.419673 CAGCCGTGAATTCACATAAGCA 59.580 45.455 32.06 0.0 46.75 3.91 F
1781 1833 0.036732 GTTCAGACACTGGGATGGCA 59.963 55.000 0.00 0.0 31.51 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2299 2357 1.803334 TCGCGAGGCACAACTAATTT 58.197 45.0 3.71 0.0 0.0 1.82 R
3599 3666 0.464373 ATTGCTACGCACCAGATGGG 60.464 55.0 3.48 0.0 46.6 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
155 156 4.885907 CCTTCGTGTCCTGTAAGTCCTATA 59.114 45.833 0.00 0.00 0.00 1.31
196 197 9.494271 GAAACAAGGCAGTCATATAGATTGATA 57.506 33.333 0.00 0.00 36.14 2.15
417 419 4.576463 GCAACATCTACAGATTTAGGGTGG 59.424 45.833 0.00 0.00 31.21 4.61
777 784 2.997986 CCCTTTGCTGCAACAAATGATC 59.002 45.455 15.72 0.00 38.76 2.92
891 898 2.670905 CGACAGCCGTGAATTCACATAA 59.329 45.455 32.06 0.00 46.75 1.90
894 901 2.419673 CAGCCGTGAATTCACATAAGCA 59.580 45.455 32.06 0.00 46.75 3.91
1032 1039 3.228188 ACATCAGCAACAGGAAAAGGA 57.772 42.857 0.00 0.00 0.00 3.36
1250 1258 7.998383 ACAGGTGGAACTAATAAATGCATATCA 59.002 33.333 0.00 0.00 36.74 2.15
1252 1260 9.592196 AGGTGGAACTAATAAATGCATATCAAT 57.408 29.630 0.00 0.00 36.74 2.57
1300 1315 6.369065 GGATAACGATTCCATCACTTCCATAC 59.631 42.308 0.00 0.00 33.21 2.39
1301 1316 4.753516 ACGATTCCATCACTTCCATACA 57.246 40.909 0.00 0.00 0.00 2.29
1302 1317 5.296151 ACGATTCCATCACTTCCATACAT 57.704 39.130 0.00 0.00 0.00 2.29
1559 1575 0.326595 TAATGCCGGACTTCCTTGCA 59.673 50.000 5.05 10.65 42.71 4.08
1696 1712 2.984562 TCTTGTGTCACTCACTTTGCA 58.015 42.857 4.27 0.00 46.27 4.08
1781 1833 0.036732 GTTCAGACACTGGGATGGCA 59.963 55.000 0.00 0.00 31.51 4.92
1812 1864 0.886563 GGATTGCACTTGAAGCTGCT 59.113 50.000 16.50 0.00 34.29 4.24
1824 1876 2.289072 TGAAGCTGCTCAAGGTGTACTC 60.289 50.000 1.00 0.00 36.51 2.59
1942 1996 4.060205 ACGGGATGCGTATTACCAATAAC 58.940 43.478 8.44 0.00 0.00 1.89
2336 2397 5.446709 TCGCGATTTACTATAGCTGTGTAC 58.553 41.667 3.71 0.00 0.00 2.90
2403 2464 2.029470 TGTGGAAAATCCGACAAATGGC 60.029 45.455 0.00 0.00 40.17 4.40
2823 2885 4.627611 ATTGAGGCAATTGTTGATCGAG 57.372 40.909 7.40 0.00 28.76 4.04
3124 3186 3.031736 GTGCCTGTCTAATGGAGTCCTA 58.968 50.000 11.33 0.00 0.00 2.94
3213 3275 8.986847 CCTATAGAACTATGCAATGTCTGAAAG 58.013 37.037 0.00 0.00 0.00 2.62
3237 3299 6.876257 AGTTTAGCTTTCTAGGTGATGTCTTG 59.124 38.462 0.00 0.00 33.36 3.02
3252 3314 7.148340 GGTGATGTCTTGAGAGTATTTCAAAGG 60.148 40.741 0.00 0.00 34.41 3.11
3264 3326 9.525826 AGAGTATTTCAAAGGTCAATCAGAAAT 57.474 29.630 0.00 0.00 38.68 2.17
3277 3340 9.010029 GGTCAATCAGAAATACTACCTGAAAAA 57.990 33.333 0.00 0.00 39.94 1.94
3278 3341 9.827411 GTCAATCAGAAATACTACCTGAAAAAC 57.173 33.333 0.00 0.00 39.94 2.43
3311 3374 2.886523 TGTCAGAATTGCCACTTCCAAG 59.113 45.455 0.00 0.00 0.00 3.61
3313 3376 3.319122 GTCAGAATTGCCACTTCCAAGTT 59.681 43.478 0.00 0.00 37.08 2.66
3333 3396 4.706962 AGTTTGGAAGTTCTTCTGCAAACT 59.293 37.500 25.64 25.64 37.96 2.66
3352 3415 6.624423 CAAACTGGAGCAATATGTAAAGCTT 58.376 36.000 0.00 0.00 37.48 3.74
3367 3430 5.648960 TGTAAAGCTTAAAAGATTACCCGGG 59.351 40.000 22.25 22.25 32.73 5.73
3385 3448 3.556213 CCGGGTCTGTATTTTCTGTCACA 60.556 47.826 0.00 0.00 0.00 3.58
3423 3486 5.835113 ATCCTGTTGCATACATACCAAAC 57.165 39.130 0.00 0.00 35.85 2.93
3442 3506 4.464069 AACTCTGTTCAGGAGCATCTAC 57.536 45.455 0.00 0.00 34.46 2.59
3459 3523 5.798934 GCATCTACAAGCAAATGAAAGACAG 59.201 40.000 0.00 0.00 0.00 3.51
3472 3537 3.817084 TGAAAGACAGCTCTCCAATGTTG 59.183 43.478 0.00 0.00 0.00 3.33
3474 3539 3.996921 AGACAGCTCTCCAATGTTGAT 57.003 42.857 0.00 0.00 0.00 2.57
3475 3540 3.607741 AGACAGCTCTCCAATGTTGATG 58.392 45.455 0.00 0.00 0.00 3.07
3534 3600 4.156182 GCTAATACGAACAAGCACAAACC 58.844 43.478 0.00 0.00 35.05 3.27
3599 3666 0.102481 TCGATTGAGCCCGAGTTAGC 59.898 55.000 0.00 0.00 0.00 3.09
3641 3708 3.243168 GCATAGCGAAATCATGCTGGAAA 60.243 43.478 0.00 0.00 42.46 3.13
3643 3710 5.526115 CATAGCGAAATCATGCTGGAAAAT 58.474 37.500 0.00 0.00 42.46 1.82
3644 3711 6.671190 CATAGCGAAATCATGCTGGAAAATA 58.329 36.000 0.00 0.00 42.46 1.40
3645 3712 5.179045 AGCGAAATCATGCTGGAAAATAG 57.821 39.130 0.00 0.00 40.62 1.73
3794 3903 2.519302 GATGGGGGAACATGGCCG 60.519 66.667 0.00 0.00 0.00 6.13
3795 3904 4.839706 ATGGGGGAACATGGCCGC 62.840 66.667 13.40 13.40 37.61 6.53
3802 3911 4.440829 AACATGGCCGCGGGGAAT 62.441 61.111 29.38 12.02 34.06 3.01
3803 3912 4.875713 ACATGGCCGCGGGGAATC 62.876 66.667 29.38 9.53 34.06 2.52
3812 3921 3.234730 CGGGGAATCGGAGGGGAG 61.235 72.222 0.00 0.00 0.00 4.30
3813 3922 3.561241 GGGGAATCGGAGGGGAGC 61.561 72.222 0.00 0.00 0.00 4.70
3814 3923 2.446802 GGGAATCGGAGGGGAGCT 60.447 66.667 0.00 0.00 0.00 4.09
3815 3924 2.812619 GGGAATCGGAGGGGAGCTG 61.813 68.421 0.00 0.00 0.00 4.24
3816 3925 2.812619 GGAATCGGAGGGGAGCTGG 61.813 68.421 0.00 0.00 0.00 4.85
3817 3926 3.468326 GAATCGGAGGGGAGCTGGC 62.468 68.421 0.00 0.00 0.00 4.85
3818 3927 4.488911 ATCGGAGGGGAGCTGGCT 62.489 66.667 0.00 0.00 0.00 4.75
3819 3928 2.605535 AATCGGAGGGGAGCTGGCTA 62.606 60.000 0.00 0.00 0.00 3.93
3820 3929 2.605535 ATCGGAGGGGAGCTGGCTAA 62.606 60.000 0.00 0.00 0.00 3.09
3821 3930 2.143419 CGGAGGGGAGCTGGCTAAT 61.143 63.158 0.00 0.00 0.00 1.73
3822 3931 1.757949 GGAGGGGAGCTGGCTAATC 59.242 63.158 0.00 0.00 0.00 1.75
3823 3932 0.766288 GGAGGGGAGCTGGCTAATCT 60.766 60.000 0.00 0.00 0.00 2.40
3824 3933 0.684535 GAGGGGAGCTGGCTAATCTC 59.315 60.000 0.00 0.00 0.00 2.75
3825 3934 1.118356 AGGGGAGCTGGCTAATCTCG 61.118 60.000 0.00 0.00 0.00 4.04
3826 3935 1.115930 GGGGAGCTGGCTAATCTCGA 61.116 60.000 0.00 0.00 0.00 4.04
3827 3936 0.972883 GGGAGCTGGCTAATCTCGAT 59.027 55.000 0.00 0.00 0.00 3.59
3828 3937 1.337635 GGGAGCTGGCTAATCTCGATG 60.338 57.143 0.00 0.00 0.00 3.84
3829 3938 1.337635 GGAGCTGGCTAATCTCGATGG 60.338 57.143 0.00 0.00 0.00 3.51
3830 3939 0.034616 AGCTGGCTAATCTCGATGGC 59.965 55.000 0.00 0.00 0.00 4.40
3831 3940 0.952984 GCTGGCTAATCTCGATGGCC 60.953 60.000 5.02 5.02 39.41 5.36
3835 3944 0.394565 GCTAATCTCGATGGCCACCT 59.605 55.000 8.16 0.00 0.00 4.00
3915 4024 1.896660 GCAAGTCAACGCCCAAGGA 60.897 57.895 0.00 0.00 0.00 3.36
3916 4025 1.452145 GCAAGTCAACGCCCAAGGAA 61.452 55.000 0.00 0.00 0.00 3.36
3917 4026 0.593128 CAAGTCAACGCCCAAGGAAG 59.407 55.000 0.00 0.00 0.00 3.46
3918 4027 1.172812 AAGTCAACGCCCAAGGAAGC 61.173 55.000 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
155 156 5.600696 CCTTGTTTCATAAACTGCCAAAGT 58.399 37.500 4.35 0.00 41.90 2.66
620 625 1.677576 AGCAATGCCATTATCACCACG 59.322 47.619 0.00 0.00 0.00 4.94
731 736 8.576442 GGAAAAGGTTGAAATCATTAGAACTCA 58.424 33.333 0.00 0.00 0.00 3.41
751 756 2.600470 TGTTGCAGCAAAGGGAAAAG 57.400 45.000 10.11 0.00 0.00 2.27
756 763 2.529780 TCATTTGTTGCAGCAAAGGG 57.470 45.000 31.04 24.49 41.00 3.95
777 784 6.036517 GCACACTTGGAACTGTATCTTGATAG 59.963 42.308 0.00 0.00 0.00 2.08
891 898 3.221771 TGTTATTGCAACCAACTCTGCT 58.778 40.909 20.48 0.00 39.38 4.24
894 901 5.590530 TGTTTGTTATTGCAACCAACTCT 57.409 34.783 20.48 0.34 32.95 3.24
1032 1039 5.635120 ACCTCAGCTAAAAACTCTTCCATT 58.365 37.500 0.00 0.00 0.00 3.16
1183 1191 8.833231 AATGATCTACAAACTTCATATACCCG 57.167 34.615 0.00 0.00 0.00 5.28
1221 1229 8.766994 ATGCATTTATTAGTTCCACCTGTTAT 57.233 30.769 0.00 0.00 0.00 1.89
1250 1258 7.378181 CCTTTCACCTTGCAAGTTACAATATT 58.622 34.615 24.35 0.00 0.00 1.28
1252 1260 5.242838 CCCTTTCACCTTGCAAGTTACAATA 59.757 40.000 24.35 3.66 0.00 1.90
1253 1261 4.039124 CCCTTTCACCTTGCAAGTTACAAT 59.961 41.667 24.35 0.67 0.00 2.71
1254 1262 3.383185 CCCTTTCACCTTGCAAGTTACAA 59.617 43.478 24.35 11.07 0.00 2.41
1256 1264 3.219281 TCCCTTTCACCTTGCAAGTTAC 58.781 45.455 24.35 0.00 0.00 2.50
1257 1265 3.586470 TCCCTTTCACCTTGCAAGTTA 57.414 42.857 24.35 7.09 0.00 2.24
1258 1266 2.452600 TCCCTTTCACCTTGCAAGTT 57.547 45.000 24.35 8.40 0.00 2.66
1259 1267 2.683211 ATCCCTTTCACCTTGCAAGT 57.317 45.000 24.35 10.37 0.00 3.16
1260 1268 3.119849 CGTTATCCCTTTCACCTTGCAAG 60.120 47.826 19.93 19.93 0.00 4.01
1261 1269 2.817258 CGTTATCCCTTTCACCTTGCAA 59.183 45.455 0.00 0.00 0.00 4.08
1262 1270 2.039216 TCGTTATCCCTTTCACCTTGCA 59.961 45.455 0.00 0.00 0.00 4.08
1263 1271 2.706890 TCGTTATCCCTTTCACCTTGC 58.293 47.619 0.00 0.00 0.00 4.01
1264 1272 4.335594 GGAATCGTTATCCCTTTCACCTTG 59.664 45.833 0.00 0.00 0.00 3.61
1696 1712 4.261031 GCTAACAATTTATCGGATGCGGTT 60.261 41.667 6.82 3.62 0.00 4.44
1812 1864 2.992847 TCCTCCAGAGTACACCTTGA 57.007 50.000 0.00 0.00 0.00 3.02
1824 1876 3.152341 AGAAATGCAGTGTTTCCTCCAG 58.848 45.455 7.49 0.00 36.48 3.86
1942 1996 2.159184 TGCGCCTTCAAGTCTCTATGAG 60.159 50.000 4.18 0.00 0.00 2.90
2299 2357 1.803334 TCGCGAGGCACAACTAATTT 58.197 45.000 3.71 0.00 0.00 1.82
2336 2397 9.521503 TCAATGAGTCTGAACTTAGATATTTCG 57.478 33.333 0.00 0.00 35.28 3.46
2460 2521 3.806625 AGGCACCAAATATGCACAATC 57.193 42.857 0.00 0.00 45.27 2.67
2601 2663 4.333372 TGGTTAGTTCGTTCTGTGAAAACC 59.667 41.667 0.00 0.00 37.01 3.27
3101 3163 2.027192 GGACTCCATTAGACAGGCACAA 60.027 50.000 0.00 0.00 0.00 3.33
3124 3186 2.291465 TCAAGTTGTAGCGTACGTGTCT 59.709 45.455 17.90 8.11 0.00 3.41
3213 3275 6.874134 TCAAGACATCACCTAGAAAGCTAAAC 59.126 38.462 0.00 0.00 0.00 2.01
3222 3284 7.615757 TGAAATACTCTCAAGACATCACCTAGA 59.384 37.037 0.00 0.00 0.00 2.43
3223 3285 7.776107 TGAAATACTCTCAAGACATCACCTAG 58.224 38.462 0.00 0.00 0.00 3.02
3237 3299 8.553459 TTCTGATTGACCTTTGAAATACTCTC 57.447 34.615 0.00 0.00 0.00 3.20
3252 3314 9.827411 GTTTTTCAGGTAGTATTTCTGATTGAC 57.173 33.333 0.00 0.00 37.38 3.18
3277 3340 9.223764 TGGCAATTCTGACATCCTGTTATAGGT 62.224 40.741 0.00 0.00 40.94 3.08
3278 3341 6.913001 TGGCAATTCTGACATCCTGTTATAGG 60.913 42.308 0.00 0.00 41.29 2.57
3289 3352 3.159213 TGGAAGTGGCAATTCTGACAT 57.841 42.857 24.68 0.00 44.43 3.06
3291 3354 2.887152 ACTTGGAAGTGGCAATTCTGAC 59.113 45.455 24.68 10.88 37.98 3.51
3294 3357 4.326504 CAAACTTGGAAGTGGCAATTCT 57.673 40.909 24.68 4.57 39.66 2.40
3311 3374 4.800471 CAGTTTGCAGAAGAACTTCCAAAC 59.200 41.667 24.49 24.49 40.33 2.93
3313 3376 3.381272 CCAGTTTGCAGAAGAACTTCCAA 59.619 43.478 10.41 6.56 40.33 3.53
3333 3396 8.574251 TCTTTTAAGCTTTACATATTGCTCCA 57.426 30.769 3.20 0.00 34.38 3.86
3352 3415 6.564557 AATACAGACCCGGGTAATCTTTTA 57.435 37.500 30.38 13.11 0.00 1.52
3367 3430 6.533367 GGAGAGATGTGACAGAAAATACAGAC 59.467 42.308 0.00 0.00 0.00 3.51
3385 3448 4.491675 ACAGGATATTCTGCTGGAGAGAT 58.508 43.478 11.21 0.00 46.90 2.75
3423 3486 4.431809 CTTGTAGATGCTCCTGAACAGAG 58.568 47.826 3.19 1.11 0.00 3.35
3442 3506 4.474113 GAGAGCTGTCTTTCATTTGCTTG 58.526 43.478 3.06 0.00 30.97 4.01
3459 3523 4.771590 TTTGTCATCAACATTGGAGAGC 57.228 40.909 0.00 0.00 37.82 4.09
3494 3560 9.196552 CGTATTAGCAACTGAGAATTCATCATA 57.803 33.333 8.44 0.00 31.68 2.15
3599 3666 0.464373 ATTGCTACGCACCAGATGGG 60.464 55.000 3.48 0.00 46.60 4.00
3641 3708 5.312895 TCCATGTGTTGCAGTTGTACTATT 58.687 37.500 0.00 0.00 0.00 1.73
3643 3710 4.344359 TCCATGTGTTGCAGTTGTACTA 57.656 40.909 0.00 0.00 0.00 1.82
3644 3711 3.207265 TCCATGTGTTGCAGTTGTACT 57.793 42.857 0.00 0.00 0.00 2.73
3645 3712 5.449041 CCATATCCATGTGTTGCAGTTGTAC 60.449 44.000 0.00 0.00 0.00 2.90
3795 3904 3.234730 CTCCCCTCCGATTCCCCG 61.235 72.222 0.00 0.00 0.00 5.73
3796 3905 3.561241 GCTCCCCTCCGATTCCCC 61.561 72.222 0.00 0.00 0.00 4.81
3797 3906 2.446802 AGCTCCCCTCCGATTCCC 60.447 66.667 0.00 0.00 0.00 3.97
3798 3907 2.812619 CCAGCTCCCCTCCGATTCC 61.813 68.421 0.00 0.00 0.00 3.01
3799 3908 2.825264 CCAGCTCCCCTCCGATTC 59.175 66.667 0.00 0.00 0.00 2.52
3800 3909 2.605535 TAGCCAGCTCCCCTCCGATT 62.606 60.000 0.00 0.00 0.00 3.34
3801 3910 2.605535 TTAGCCAGCTCCCCTCCGAT 62.606 60.000 0.00 0.00 0.00 4.18
3802 3911 2.605535 ATTAGCCAGCTCCCCTCCGA 62.606 60.000 0.00 0.00 0.00 4.55
3803 3912 2.105806 GATTAGCCAGCTCCCCTCCG 62.106 65.000 0.00 0.00 0.00 4.63
3804 3913 0.766288 AGATTAGCCAGCTCCCCTCC 60.766 60.000 0.00 0.00 0.00 4.30
3805 3914 0.684535 GAGATTAGCCAGCTCCCCTC 59.315 60.000 0.00 0.00 0.00 4.30
3806 3915 1.118356 CGAGATTAGCCAGCTCCCCT 61.118 60.000 0.00 0.00 0.00 4.79
3807 3916 1.115930 TCGAGATTAGCCAGCTCCCC 61.116 60.000 0.00 0.00 0.00 4.81
3808 3917 0.972883 ATCGAGATTAGCCAGCTCCC 59.027 55.000 0.00 0.00 0.00 4.30
3809 3918 1.337635 CCATCGAGATTAGCCAGCTCC 60.338 57.143 0.00 0.00 0.00 4.70
3810 3919 1.938926 GCCATCGAGATTAGCCAGCTC 60.939 57.143 0.00 0.00 0.00 4.09
3811 3920 0.034616 GCCATCGAGATTAGCCAGCT 59.965 55.000 0.00 0.00 0.00 4.24
3812 3921 0.952984 GGCCATCGAGATTAGCCAGC 60.953 60.000 15.34 0.00 43.32 4.85
3813 3922 3.223661 GGCCATCGAGATTAGCCAG 57.776 57.895 15.34 0.00 43.32 4.85
3815 3924 0.603975 GGTGGCCATCGAGATTAGCC 60.604 60.000 9.72 14.00 44.13 3.93
3816 3925 0.394565 AGGTGGCCATCGAGATTAGC 59.605 55.000 9.72 0.00 0.00 3.09
3817 3926 1.688735 TCAGGTGGCCATCGAGATTAG 59.311 52.381 9.72 0.00 0.00 1.73
3818 3927 1.688735 CTCAGGTGGCCATCGAGATTA 59.311 52.381 24.76 4.00 0.00 1.75
3819 3928 0.467384 CTCAGGTGGCCATCGAGATT 59.533 55.000 24.76 0.51 0.00 2.40
3820 3929 1.406065 CCTCAGGTGGCCATCGAGAT 61.406 60.000 28.40 4.67 0.00 2.75
3821 3930 2.060383 CCTCAGGTGGCCATCGAGA 61.060 63.158 28.40 21.41 0.00 4.04
3822 3931 2.503061 CCTCAGGTGGCCATCGAG 59.497 66.667 23.09 23.09 0.00 4.04
3823 3932 3.785859 GCCTCAGGTGGCCATCGA 61.786 66.667 9.72 9.68 46.82 3.59
3830 3939 1.599047 CCTACACAGCCTCAGGTGG 59.401 63.158 0.00 0.00 46.03 4.61
3835 3944 2.603473 ACGCCCTACACAGCCTCA 60.603 61.111 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.