Multiple sequence alignment - TraesCS5B01G186500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G186500 chr5B 100.000 6844 0 0 1 6844 338718099 338711256 0.000000e+00 12639.0
1 TraesCS5B01G186500 chr5A 95.322 2950 94 9 2280 5191 400875780 400878723 0.000000e+00 4643.0
2 TraesCS5B01G186500 chr5A 97.000 600 18 0 1692 2291 400866861 400867460 0.000000e+00 1009.0
3 TraesCS5B01G186500 chr5A 88.366 722 53 8 5192 5910 400878773 400879466 0.000000e+00 839.0
4 TraesCS5B01G186500 chr5A 85.503 745 52 19 580 1296 400866091 400866807 0.000000e+00 726.0
5 TraesCS5B01G186500 chr5A 84.270 445 51 9 5920 6348 400880950 400881391 3.820000e-112 416.0
6 TraesCS5B01G186500 chr5A 97.115 104 3 0 6348 6451 400881729 400881832 7.050000e-40 176.0
7 TraesCS5B01G186500 chr5D 94.721 2690 84 28 1451 4094 298055313 298052636 0.000000e+00 4128.0
8 TraesCS5B01G186500 chr5D 96.000 1125 23 3 4089 5191 298051922 298050798 0.000000e+00 1808.0
9 TraesCS5B01G186500 chr5D 89.066 878 53 19 575 1427 298056168 298055309 0.000000e+00 1050.0
10 TraesCS5B01G186500 chr5D 93.708 445 20 3 5192 5629 298050734 298050291 0.000000e+00 660.0
11 TraesCS5B01G186500 chr5D 88.302 530 44 12 5634 6159 298050240 298049725 2.710000e-173 619.0
12 TraesCS5B01G186500 chr5D 90.538 465 27 6 6142 6595 298049687 298049229 3.530000e-167 599.0
13 TraesCS5B01G186500 chr5D 86.885 122 16 0 369 490 447760549 447760670 3.330000e-28 137.0
14 TraesCS5B01G186500 chr2B 94.293 368 19 2 1 368 538801841 538802206 4.630000e-156 562.0
15 TraesCS5B01G186500 chr2B 94.022 368 21 1 1 368 357094117 357093751 2.160000e-154 556.0
16 TraesCS5B01G186500 chr2B 93.496 369 22 2 1 368 679155089 679155456 1.300000e-151 547.0
17 TraesCS5B01G186500 chr7D 93.583 374 20 3 1 371 219836647 219837019 7.760000e-154 555.0
18 TraesCS5B01G186500 chr3B 93.784 370 21 2 1 369 690854318 690854686 7.760000e-154 555.0
19 TraesCS5B01G186500 chr3B 96.203 237 9 0 6596 6832 181305912 181306148 8.320000e-104 388.0
20 TraesCS5B01G186500 chr3B 94.355 248 14 0 6596 6843 106451254 106451007 1.390000e-101 381.0
21 TraesCS5B01G186500 chr3B 93.701 254 13 2 6590 6843 181308051 181308301 1.800000e-100 377.0
22 TraesCS5B01G186500 chr3B 93.227 251 15 2 6594 6844 354028055 354027807 1.080000e-97 368.0
23 TraesCS5B01G186500 chr3B 93.173 249 17 0 6596 6844 106453343 106453095 3.900000e-97 366.0
24 TraesCS5B01G186500 chr3B 88.000 125 15 0 369 493 735209113 735209237 1.540000e-31 148.0
25 TraesCS5B01G186500 chr3B 96.154 52 1 1 1288 1339 4624995 4625045 4.400000e-12 84.2
26 TraesCS5B01G186500 chr3D 93.514 370 22 2 1 369 519301685 519301317 3.610000e-152 549.0
27 TraesCS5B01G186500 chr3D 90.909 55 3 2 1289 1343 31433554 31433502 9.520000e-09 73.1
28 TraesCS5B01G186500 chr7B 93.716 366 22 1 7 371 632179796 632179431 1.300000e-151 547.0
29 TraesCS5B01G186500 chr7B 93.225 369 25 0 1 369 516135024 516135392 1.680000e-150 544.0
30 TraesCS5B01G186500 chr3A 93.514 370 21 2 1 368 209407776 209408144 1.300000e-151 547.0
31 TraesCS5B01G186500 chr3A 90.909 55 3 2 1289 1343 51772396 51772448 9.520000e-09 73.1
32 TraesCS5B01G186500 chr1D 95.142 247 11 1 6598 6844 61788806 61788561 8.320000e-104 388.0
33 TraesCS5B01G186500 chr1D 94.332 247 12 2 6596 6842 61786712 61786468 1.800000e-100 377.0
34 TraesCS5B01G186500 chr1B 93.333 255 14 1 6590 6844 539131617 539131868 2.330000e-99 374.0
35 TraesCS5B01G186500 chr7A 92.430 251 18 1 6594 6844 675048180 675047931 2.350000e-94 357.0
36 TraesCS5B01G186500 chr6A 85.057 261 28 7 6029 6286 503708682 503708430 8.810000e-64 255.0
37 TraesCS5B01G186500 chr6B 87.692 130 15 1 369 497 436506312 436506441 4.280000e-32 150.0
38 TraesCS5B01G186500 chr6B 78.519 135 22 7 2799 2929 187836105 187835974 1.580000e-11 82.4
39 TraesCS5B01G186500 chr1A 96.154 52 1 1 1289 1340 478460393 478460443 4.400000e-12 84.2
40 TraesCS5B01G186500 chrUn 97.917 48 0 1 1289 1336 95223380 95223426 1.580000e-11 82.4
41 TraesCS5B01G186500 chr2D 94.118 51 1 1 1289 1339 553332598 553332646 7.360000e-10 76.8
42 TraesCS5B01G186500 chr4B 87.692 65 7 1 1281 1345 305479404 305479341 2.650000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G186500 chr5B 338711256 338718099 6843 True 12639.000000 12639 100.000000 1 6844 1 chr5B.!!$R1 6843
1 TraesCS5B01G186500 chr5A 400875780 400881832 6052 False 1518.500000 4643 91.268250 2280 6451 4 chr5A.!!$F2 4171
2 TraesCS5B01G186500 chr5A 400866091 400867460 1369 False 867.500000 1009 91.251500 580 2291 2 chr5A.!!$F1 1711
3 TraesCS5B01G186500 chr5D 298049229 298056168 6939 True 1477.333333 4128 92.055833 575 6595 6 chr5D.!!$R1 6020
4 TraesCS5B01G186500 chr3B 181305912 181308301 2389 False 382.500000 388 94.952000 6590 6843 2 chr3B.!!$F4 253
5 TraesCS5B01G186500 chr3B 106451007 106453343 2336 True 373.500000 381 93.764000 6596 6844 2 chr3B.!!$R2 248
6 TraesCS5B01G186500 chr1D 61786468 61788806 2338 True 382.500000 388 94.737000 6596 6844 2 chr1D.!!$R1 248

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
294 295 0.033504 ATAGTAATCGTGCCCTGGCG 59.966 55.000 3.32 0.00 45.51 5.69 F
422 423 0.033894 ACCACCCAAAACGGTCTGTT 60.034 50.000 0.00 0.00 44.59 3.16 F
548 549 0.112025 AGCAAGCAGGCTCCTCTTTT 59.888 50.000 0.00 0.00 41.05 2.27 F
1164 1193 0.168128 GAACAATGTACTGCGTGGCC 59.832 55.000 0.00 0.00 0.00 5.36 F
1459 1499 0.677288 TCGTCCGTGTTGAATCTGGT 59.323 50.000 0.00 0.00 0.00 4.00 F
1481 1521 1.333619 CCGACCGCCAAATGAATAAGG 59.666 52.381 0.00 0.00 0.00 2.69 F
3181 3253 1.754226 TCACTGTTTGCCCTGGAAAAC 59.246 47.619 12.15 12.15 42.46 2.43 F
3859 3960 1.078567 CCTGTCCCTCTGCTTCTGC 60.079 63.158 0.00 0.00 40.20 4.26 F
3867 3968 2.008329 CCTCTGCTTCTGCTTTAGCTG 58.992 52.381 0.00 2.81 42.66 4.24 F
5294 6200 1.005340 GCTTCTCAGATTGCCGACAG 58.995 55.000 0.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1445 1485 0.037697 TCGGGACCAGATTCAACACG 60.038 55.000 0.00 0.00 0.00 4.49 R
1929 1972 0.178967 TCTGGGTTTTGCAGCATCCA 60.179 50.000 0.00 1.53 0.00 3.41 R
2325 2368 1.196766 ATGTCAGCACTCCTCCTGCA 61.197 55.000 0.00 0.00 37.08 4.41 R
2355 2398 2.546795 CCGAGCTTCAGAGTTTGAGTGT 60.547 50.000 0.00 0.00 37.07 3.55 R
3181 3253 2.457366 ACAAGGAGCTGTTTCTACCG 57.543 50.000 0.00 0.00 0.00 4.02 R
3423 3496 8.613060 TTGGAATGCAAAATTATTTGTAGCAA 57.387 26.923 13.67 0.02 46.19 3.91 R
4541 5364 2.726633 TGAGCTTAGCAACGTTTTTGC 58.273 42.857 7.07 0.00 45.22 3.68 R
5270 6176 1.390565 GGCAATCTGAGAAGCTGCAT 58.609 50.000 14.00 0.00 34.66 3.96 R
5423 6329 1.747355 CAGAAGAACATCCCACATGCC 59.253 52.381 0.00 0.00 0.00 4.40 R
6622 9476 1.602771 GTCAGGCCCCTAACTGTCC 59.397 63.158 0.00 0.00 36.17 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 3.836151 GGCACGGCCCGATTATTT 58.164 55.556 11.71 0.00 44.06 1.40
83 84 2.112029 GGCACGGCCCGATTATTTT 58.888 52.632 11.71 0.00 44.06 1.82
84 85 0.458260 GGCACGGCCCGATTATTTTT 59.542 50.000 11.71 0.00 44.06 1.94
131 132 9.866655 ATATATGGCCCAATATGTACAAATAGG 57.133 33.333 0.00 0.00 0.00 2.57
132 133 4.148838 TGGCCCAATATGTACAAATAGGC 58.851 43.478 15.23 15.23 37.14 3.93
133 134 4.141041 TGGCCCAATATGTACAAATAGGCT 60.141 41.667 20.06 0.00 37.98 4.58
134 135 5.073827 TGGCCCAATATGTACAAATAGGCTA 59.926 40.000 20.06 14.70 37.98 3.93
135 136 6.007703 GGCCCAATATGTACAAATAGGCTAA 58.992 40.000 20.06 0.00 37.98 3.09
136 137 6.492087 GGCCCAATATGTACAAATAGGCTAAA 59.508 38.462 20.06 0.00 37.98 1.85
137 138 7.014808 GGCCCAATATGTACAAATAGGCTAAAA 59.985 37.037 20.06 0.00 37.98 1.52
138 139 8.417884 GCCCAATATGTACAAATAGGCTAAAAA 58.582 33.333 15.92 0.00 35.00 1.94
139 140 9.965824 CCCAATATGTACAAATAGGCTAAAAAG 57.034 33.333 0.00 0.00 0.00 2.27
140 141 9.463443 CCAATATGTACAAATAGGCTAAAAAGC 57.537 33.333 0.00 0.00 0.00 3.51
141 142 9.169468 CAATATGTACAAATAGGCTAAAAAGCG 57.831 33.333 0.00 0.00 35.24 4.68
142 143 6.753107 ATGTACAAATAGGCTAAAAAGCGT 57.247 33.333 0.00 0.00 36.78 5.07
143 144 6.563222 TGTACAAATAGGCTAAAAAGCGTT 57.437 33.333 0.00 0.00 34.55 4.84
144 145 6.604930 TGTACAAATAGGCTAAAAAGCGTTC 58.395 36.000 0.00 0.00 34.55 3.95
145 146 5.699097 ACAAATAGGCTAAAAAGCGTTCA 57.301 34.783 0.00 0.00 34.55 3.18
146 147 5.458015 ACAAATAGGCTAAAAAGCGTTCAC 58.542 37.500 0.00 0.00 34.55 3.18
147 148 5.240844 ACAAATAGGCTAAAAAGCGTTCACT 59.759 36.000 0.00 0.00 34.55 3.41
148 149 4.946784 ATAGGCTAAAAAGCGTTCACTG 57.053 40.909 0.00 0.00 34.55 3.66
149 150 1.266989 AGGCTAAAAAGCGTTCACTGC 59.733 47.619 0.00 0.00 35.24 4.40
150 151 1.318251 GCTAAAAAGCGTTCACTGCG 58.682 50.000 0.00 0.00 37.44 5.18
151 152 1.333791 GCTAAAAAGCGTTCACTGCGT 60.334 47.619 0.00 0.00 37.44 5.24
152 153 2.560896 CTAAAAAGCGTTCACTGCGTC 58.439 47.619 0.00 0.00 37.44 5.19
153 154 0.730265 AAAAAGCGTTCACTGCGTCA 59.270 45.000 0.00 0.00 37.44 4.35
154 155 0.730265 AAAAGCGTTCACTGCGTCAA 59.270 45.000 0.00 0.00 37.44 3.18
155 156 0.730265 AAAGCGTTCACTGCGTCAAA 59.270 45.000 0.00 0.00 37.44 2.69
156 157 0.944386 AAGCGTTCACTGCGTCAAAT 59.056 45.000 0.00 0.00 37.44 2.32
157 158 1.790755 AGCGTTCACTGCGTCAAATA 58.209 45.000 0.00 0.00 37.44 1.40
158 159 2.139917 AGCGTTCACTGCGTCAAATAA 58.860 42.857 0.00 0.00 37.44 1.40
159 160 2.096417 AGCGTTCACTGCGTCAAATAAC 60.096 45.455 0.00 0.00 37.44 1.89
160 161 2.349060 GCGTTCACTGCGTCAAATAACA 60.349 45.455 0.00 0.00 0.00 2.41
161 162 3.469629 CGTTCACTGCGTCAAATAACAG 58.530 45.455 0.00 0.00 36.22 3.16
162 163 3.664276 CGTTCACTGCGTCAAATAACAGG 60.664 47.826 0.00 0.00 34.40 4.00
163 164 1.804151 TCACTGCGTCAAATAACAGGC 59.196 47.619 0.00 0.00 34.40 4.85
164 165 1.806542 CACTGCGTCAAATAACAGGCT 59.193 47.619 0.00 0.00 34.40 4.58
165 166 3.000041 CACTGCGTCAAATAACAGGCTA 59.000 45.455 0.00 0.00 34.40 3.93
166 167 3.435327 CACTGCGTCAAATAACAGGCTAA 59.565 43.478 0.00 0.00 34.40 3.09
167 168 4.069304 ACTGCGTCAAATAACAGGCTAAA 58.931 39.130 0.00 0.00 34.40 1.85
168 169 4.517453 ACTGCGTCAAATAACAGGCTAAAA 59.483 37.500 0.00 0.00 34.40 1.52
169 170 5.009210 ACTGCGTCAAATAACAGGCTAAAAA 59.991 36.000 0.00 0.00 34.40 1.94
170 171 6.019779 TGCGTCAAATAACAGGCTAAAAAT 57.980 33.333 0.00 0.00 0.00 1.82
171 172 7.094549 ACTGCGTCAAATAACAGGCTAAAAATA 60.095 33.333 0.00 0.00 34.40 1.40
172 173 7.767261 TGCGTCAAATAACAGGCTAAAAATAT 58.233 30.769 0.00 0.00 0.00 1.28
173 174 7.700234 TGCGTCAAATAACAGGCTAAAAATATG 59.300 33.333 0.00 0.00 0.00 1.78
174 175 7.305993 GCGTCAAATAACAGGCTAAAAATATGC 60.306 37.037 0.00 0.00 0.00 3.14
175 176 7.700234 CGTCAAATAACAGGCTAAAAATATGCA 59.300 33.333 0.00 0.00 0.00 3.96
176 177 9.023967 GTCAAATAACAGGCTAAAAATATGCAG 57.976 33.333 0.00 0.00 0.00 4.41
177 178 7.706179 TCAAATAACAGGCTAAAAATATGCAGC 59.294 33.333 0.00 0.00 0.00 5.25
181 182 3.097877 GGCTAAAAATATGCAGCCCAC 57.902 47.619 0.00 0.00 46.47 4.61
182 183 2.224042 GGCTAAAAATATGCAGCCCACC 60.224 50.000 0.00 0.00 46.47 4.61
183 184 2.543653 GCTAAAAATATGCAGCCCACCG 60.544 50.000 0.00 0.00 0.00 4.94
184 185 1.555967 AAAAATATGCAGCCCACCGT 58.444 45.000 0.00 0.00 0.00 4.83
185 186 0.817013 AAAATATGCAGCCCACCGTG 59.183 50.000 0.00 0.00 0.00 4.94
186 187 1.666209 AAATATGCAGCCCACCGTGC 61.666 55.000 0.00 0.00 40.29 5.34
187 188 2.556840 AATATGCAGCCCACCGTGCT 62.557 55.000 0.00 0.00 40.54 4.40
188 189 1.695114 ATATGCAGCCCACCGTGCTA 61.695 55.000 0.00 0.00 40.54 3.49
189 190 1.904990 TATGCAGCCCACCGTGCTAA 61.905 55.000 0.00 0.00 40.54 3.09
190 191 2.671619 GCAGCCCACCGTGCTAAA 60.672 61.111 0.00 0.00 36.81 1.85
191 192 2.978018 GCAGCCCACCGTGCTAAAC 61.978 63.158 0.00 0.00 36.81 2.01
200 201 2.559330 GTGCTAAACGGGCCAACG 59.441 61.111 4.39 1.48 40.31 4.10
214 215 4.622650 AACGTGCCGGCCCGTTTA 62.623 61.111 38.23 11.19 44.16 2.01
217 218 2.265424 GTGCCGGCCCGTTTACTA 59.735 61.111 26.77 0.00 0.00 1.82
218 219 1.375780 GTGCCGGCCCGTTTACTAA 60.376 57.895 26.77 0.00 0.00 2.24
219 220 1.375780 TGCCGGCCCGTTTACTAAC 60.376 57.895 26.77 0.00 0.00 2.34
220 221 1.078918 GCCGGCCCGTTTACTAACT 60.079 57.895 18.11 0.00 31.89 2.24
221 222 1.363885 GCCGGCCCGTTTACTAACTG 61.364 60.000 18.11 0.00 31.89 3.16
222 223 0.741927 CCGGCCCGTTTACTAACTGG 60.742 60.000 0.85 0.00 40.48 4.00
223 224 0.741927 CGGCCCGTTTACTAACTGGG 60.742 60.000 0.00 11.19 44.21 4.45
225 226 3.164026 CCCGTTTACTAACTGGGCC 57.836 57.895 0.00 0.00 39.48 5.80
226 227 0.741927 CCCGTTTACTAACTGGGCCG 60.742 60.000 0.00 0.00 39.48 6.13
227 228 0.037046 CCGTTTACTAACTGGGCCGT 60.037 55.000 0.00 0.00 31.89 5.68
228 229 1.073177 CGTTTACTAACTGGGCCGTG 58.927 55.000 0.00 0.00 31.89 4.94
229 230 0.800631 GTTTACTAACTGGGCCGTGC 59.199 55.000 0.00 0.00 0.00 5.34
280 281 3.447040 GGCACGGCCCGTATAGTA 58.553 61.111 9.25 0.00 44.06 1.82
281 282 1.741525 GGCACGGCCCGTATAGTAA 59.258 57.895 9.25 0.00 44.06 2.24
282 283 0.319405 GGCACGGCCCGTATAGTAAT 59.681 55.000 9.25 0.00 44.06 1.89
283 284 1.670967 GGCACGGCCCGTATAGTAATC 60.671 57.143 9.25 0.00 44.06 1.75
284 285 1.973138 CACGGCCCGTATAGTAATCG 58.027 55.000 9.25 0.00 38.32 3.34
285 286 1.267806 CACGGCCCGTATAGTAATCGT 59.732 52.381 9.25 0.00 38.32 3.73
286 287 1.267806 ACGGCCCGTATAGTAATCGTG 59.732 52.381 7.20 0.00 38.73 4.35
287 288 1.706443 GGCCCGTATAGTAATCGTGC 58.294 55.000 0.00 0.00 0.00 5.34
288 289 1.670967 GGCCCGTATAGTAATCGTGCC 60.671 57.143 7.70 7.70 40.23 5.01
289 290 1.670967 GCCCGTATAGTAATCGTGCCC 60.671 57.143 0.00 0.00 0.00 5.36
290 291 1.891150 CCCGTATAGTAATCGTGCCCT 59.109 52.381 0.00 0.00 0.00 5.19
291 292 2.352421 CCCGTATAGTAATCGTGCCCTG 60.352 54.545 0.00 0.00 0.00 4.45
292 293 2.352421 CCGTATAGTAATCGTGCCCTGG 60.352 54.545 0.00 0.00 0.00 4.45
293 294 2.685100 GTATAGTAATCGTGCCCTGGC 58.315 52.381 0.00 0.00 42.35 4.85
294 295 0.033504 ATAGTAATCGTGCCCTGGCG 59.966 55.000 3.32 0.00 45.51 5.69
295 296 2.023414 TAGTAATCGTGCCCTGGCGG 62.023 60.000 3.32 0.00 45.51 6.13
321 322 3.749981 GGGCCAGGCACGATTATG 58.250 61.111 15.19 0.00 0.00 1.90
322 323 1.148273 GGGCCAGGCACGATTATGA 59.852 57.895 15.19 0.00 0.00 2.15
323 324 0.250901 GGGCCAGGCACGATTATGAT 60.251 55.000 15.19 0.00 0.00 2.45
324 325 0.877071 GGCCAGGCACGATTATGATG 59.123 55.000 15.19 0.00 0.00 3.07
325 326 0.877071 GCCAGGCACGATTATGATGG 59.123 55.000 6.55 0.00 33.35 3.51
326 327 1.527034 CCAGGCACGATTATGATGGG 58.473 55.000 0.00 0.00 0.00 4.00
327 328 0.877071 CAGGCACGATTATGATGGGC 59.123 55.000 0.00 0.00 0.00 5.36
328 329 0.250901 AGGCACGATTATGATGGGCC 60.251 55.000 0.00 0.00 40.18 5.80
329 330 1.577328 GGCACGATTATGATGGGCCG 61.577 60.000 0.00 0.00 0.00 6.13
330 331 0.602638 GCACGATTATGATGGGCCGA 60.603 55.000 0.00 0.00 0.00 5.54
331 332 1.432514 CACGATTATGATGGGCCGAG 58.567 55.000 0.00 0.00 0.00 4.63
332 333 0.320771 ACGATTATGATGGGCCGAGC 60.321 55.000 0.00 0.00 0.00 5.03
368 369 3.918544 CCCGTTTGGCCAGGTATG 58.081 61.111 5.11 0.95 0.00 2.39
369 370 2.414785 CCCGTTTGGCCAGGTATGC 61.415 63.158 5.11 0.00 0.00 3.14
370 371 1.378514 CCGTTTGGCCAGGTATGCT 60.379 57.895 5.11 0.00 0.00 3.79
371 372 1.656818 CCGTTTGGCCAGGTATGCTG 61.657 60.000 5.11 0.00 0.00 4.41
372 373 1.512694 GTTTGGCCAGGTATGCTGC 59.487 57.895 5.11 0.00 0.00 5.25
373 374 1.076370 TTTGGCCAGGTATGCTGCA 59.924 52.632 5.11 4.13 0.00 4.41
374 375 0.324552 TTTGGCCAGGTATGCTGCAT 60.325 50.000 20.18 20.18 0.00 3.96
375 376 0.550432 TTGGCCAGGTATGCTGCATA 59.450 50.000 17.90 17.90 0.00 3.14
376 377 0.109153 TGGCCAGGTATGCTGCATAG 59.891 55.000 21.86 11.69 0.00 2.23
377 378 0.109342 GGCCAGGTATGCTGCATAGT 59.891 55.000 21.86 10.22 0.00 2.12
378 379 1.233019 GCCAGGTATGCTGCATAGTG 58.767 55.000 21.86 19.92 0.00 2.74
379 380 1.233019 CCAGGTATGCTGCATAGTGC 58.767 55.000 21.86 10.84 45.29 4.40
389 390 1.638467 GCATAGTGCAGTGTAGCGC 59.362 57.895 3.69 0.00 44.26 5.92
390 391 1.766143 GCATAGTGCAGTGTAGCGCC 61.766 60.000 2.29 0.00 45.81 6.53
391 392 1.144057 ATAGTGCAGTGTAGCGCCC 59.856 57.895 2.29 0.00 45.81 6.13
392 393 2.629050 ATAGTGCAGTGTAGCGCCCG 62.629 60.000 2.29 0.00 45.81 6.13
417 418 2.835895 GGCACCACCCAAAACGGT 60.836 61.111 0.00 0.00 36.18 4.83
418 419 2.725641 GCACCACCCAAAACGGTC 59.274 61.111 0.00 0.00 32.17 4.79
419 420 1.826487 GCACCACCCAAAACGGTCT 60.826 57.895 0.00 0.00 32.17 3.85
420 421 2.029743 CACCACCCAAAACGGTCTG 58.970 57.895 0.00 0.00 32.17 3.51
421 422 0.750182 CACCACCCAAAACGGTCTGT 60.750 55.000 0.00 0.00 32.17 3.41
422 423 0.033894 ACCACCCAAAACGGTCTGTT 60.034 50.000 0.00 0.00 44.59 3.16
423 424 1.212441 ACCACCCAAAACGGTCTGTTA 59.788 47.619 0.00 0.00 40.84 2.41
424 425 2.158579 ACCACCCAAAACGGTCTGTTAT 60.159 45.455 0.00 0.00 40.84 1.89
425 426 2.227865 CCACCCAAAACGGTCTGTTATG 59.772 50.000 0.00 0.00 40.84 1.90
426 427 2.882137 CACCCAAAACGGTCTGTTATGT 59.118 45.455 0.00 0.00 40.84 2.29
427 428 2.882137 ACCCAAAACGGTCTGTTATGTG 59.118 45.455 0.00 0.00 40.84 3.21
428 429 3.142951 CCCAAAACGGTCTGTTATGTGA 58.857 45.455 0.00 0.00 40.84 3.58
429 430 3.566322 CCCAAAACGGTCTGTTATGTGAA 59.434 43.478 0.00 0.00 40.84 3.18
430 431 4.217550 CCCAAAACGGTCTGTTATGTGAAT 59.782 41.667 0.00 0.00 40.84 2.57
431 432 5.278758 CCCAAAACGGTCTGTTATGTGAATT 60.279 40.000 0.00 0.00 40.84 2.17
432 433 6.212955 CCAAAACGGTCTGTTATGTGAATTT 58.787 36.000 0.00 0.00 40.84 1.82
433 434 6.699642 CCAAAACGGTCTGTTATGTGAATTTT 59.300 34.615 0.00 0.00 40.84 1.82
434 435 7.223777 CCAAAACGGTCTGTTATGTGAATTTTT 59.776 33.333 0.00 0.00 40.84 1.94
455 456 7.452880 TTTTTCAAGACCAGGTTAGATCATG 57.547 36.000 0.00 0.00 0.00 3.07
456 457 6.373005 TTTCAAGACCAGGTTAGATCATGA 57.627 37.500 0.00 0.00 0.00 3.07
457 458 6.566079 TTCAAGACCAGGTTAGATCATGAT 57.434 37.500 8.25 8.25 0.00 2.45
458 459 6.566079 TCAAGACCAGGTTAGATCATGATT 57.434 37.500 10.14 2.85 0.00 2.57
459 460 6.962182 TCAAGACCAGGTTAGATCATGATTT 58.038 36.000 10.14 6.83 0.00 2.17
460 461 6.825213 TCAAGACCAGGTTAGATCATGATTTG 59.175 38.462 10.14 5.90 0.00 2.32
461 462 6.566079 AGACCAGGTTAGATCATGATTTGA 57.434 37.500 10.14 0.00 39.12 2.69
463 464 7.580910 AGACCAGGTTAGATCATGATTTGATT 58.419 34.615 10.14 0.00 45.29 2.57
464 465 8.057623 AGACCAGGTTAGATCATGATTTGATTT 58.942 33.333 10.14 0.00 45.29 2.17
465 466 8.230472 ACCAGGTTAGATCATGATTTGATTTC 57.770 34.615 10.14 0.00 45.29 2.17
466 467 7.835682 ACCAGGTTAGATCATGATTTGATTTCA 59.164 33.333 10.14 0.00 45.29 2.69
467 468 8.133627 CCAGGTTAGATCATGATTTGATTTCAC 58.866 37.037 10.14 0.00 45.29 3.18
468 469 8.133627 CAGGTTAGATCATGATTTGATTTCACC 58.866 37.037 10.14 7.87 45.29 4.02
469 470 7.286316 AGGTTAGATCATGATTTGATTTCACCC 59.714 37.037 10.14 0.00 45.29 4.61
470 471 7.286316 GGTTAGATCATGATTTGATTTCACCCT 59.714 37.037 10.14 0.21 45.29 4.34
471 472 6.710597 AGATCATGATTTGATTTCACCCTG 57.289 37.500 10.14 0.00 45.29 4.45
472 473 6.429151 AGATCATGATTTGATTTCACCCTGA 58.571 36.000 10.14 0.00 45.29 3.86
473 474 6.546403 AGATCATGATTTGATTTCACCCTGAG 59.454 38.462 10.14 0.00 45.29 3.35
474 475 4.951715 TCATGATTTGATTTCACCCTGAGG 59.048 41.667 0.00 0.00 40.04 3.86
475 476 6.809072 ATCATGATTTGATTTCACCCTGAGGT 60.809 38.462 1.18 0.00 45.06 3.85
476 477 4.335416 TGATTTGATTTCACCCTGAGGTC 58.665 43.478 0.00 0.00 46.45 3.85
477 478 3.874383 TTTGATTTCACCCTGAGGTCA 57.126 42.857 0.00 0.00 46.45 4.02
478 479 3.874383 TTGATTTCACCCTGAGGTCAA 57.126 42.857 0.00 0.00 46.45 3.18
479 480 3.874383 TGATTTCACCCTGAGGTCAAA 57.126 42.857 0.00 0.00 46.45 2.69
481 482 5.512942 TGATTTCACCCTGAGGTCAAATA 57.487 39.130 0.00 0.00 45.88 1.40
482 483 6.078456 TGATTTCACCCTGAGGTCAAATAT 57.922 37.500 0.00 0.00 45.88 1.28
483 484 5.887598 TGATTTCACCCTGAGGTCAAATATG 59.112 40.000 0.00 0.00 45.88 1.78
484 485 4.927267 TTCACCCTGAGGTCAAATATGT 57.073 40.909 0.00 0.00 46.45 2.29
485 486 4.220693 TCACCCTGAGGTCAAATATGTG 57.779 45.455 0.00 0.00 46.45 3.21
486 487 3.843619 TCACCCTGAGGTCAAATATGTGA 59.156 43.478 0.00 0.00 46.45 3.58
487 488 4.474651 TCACCCTGAGGTCAAATATGTGAT 59.525 41.667 0.00 0.00 46.45 3.06
488 489 5.044919 TCACCCTGAGGTCAAATATGTGATT 60.045 40.000 0.00 0.00 46.45 2.57
489 490 5.653769 CACCCTGAGGTCAAATATGTGATTT 59.346 40.000 0.00 0.00 46.45 2.17
490 491 5.888161 ACCCTGAGGTCAAATATGTGATTTC 59.112 40.000 0.00 1.28 46.45 2.17
491 492 6.125029 CCCTGAGGTCAAATATGTGATTTCT 58.875 40.000 0.00 0.00 0.00 2.52
492 493 6.039047 CCCTGAGGTCAAATATGTGATTTCTG 59.961 42.308 0.00 4.64 0.00 3.02
493 494 6.600822 CCTGAGGTCAAATATGTGATTTCTGT 59.399 38.462 0.00 0.00 0.00 3.41
494 495 7.201679 CCTGAGGTCAAATATGTGATTTCTGTC 60.202 40.741 0.00 0.00 0.00 3.51
495 496 6.599244 TGAGGTCAAATATGTGATTTCTGTCC 59.401 38.462 0.00 0.00 0.00 4.02
496 497 5.586243 AGGTCAAATATGTGATTTCTGTCCG 59.414 40.000 0.00 0.00 0.00 4.79
497 498 5.220854 GGTCAAATATGTGATTTCTGTCCGG 60.221 44.000 0.00 0.00 0.00 5.14
498 499 4.881273 TCAAATATGTGATTTCTGTCCGGG 59.119 41.667 0.00 0.00 0.00 5.73
499 500 3.492102 ATATGTGATTTCTGTCCGGGG 57.508 47.619 0.00 0.00 0.00 5.73
500 501 0.394352 ATGTGATTTCTGTCCGGGGC 60.394 55.000 0.00 0.00 0.00 5.80
501 502 2.106683 GTGATTTCTGTCCGGGGCG 61.107 63.158 0.00 0.00 0.00 6.13
502 503 2.267961 GATTTCTGTCCGGGGCGT 59.732 61.111 0.00 0.00 0.00 5.68
503 504 2.046314 ATTTCTGTCCGGGGCGTG 60.046 61.111 0.00 0.00 0.00 5.34
546 547 3.493286 AGCAAGCAGGCTCCTCTT 58.507 55.556 0.00 0.00 41.05 2.85
547 548 1.766381 AGCAAGCAGGCTCCTCTTT 59.234 52.632 0.00 0.00 41.05 2.52
548 549 0.112025 AGCAAGCAGGCTCCTCTTTT 59.888 50.000 0.00 0.00 41.05 2.27
549 550 0.525311 GCAAGCAGGCTCCTCTTTTC 59.475 55.000 0.00 0.00 0.00 2.29
550 551 1.885790 GCAAGCAGGCTCCTCTTTTCT 60.886 52.381 0.00 0.00 0.00 2.52
551 552 2.616510 GCAAGCAGGCTCCTCTTTTCTA 60.617 50.000 0.00 0.00 0.00 2.10
552 553 3.679389 CAAGCAGGCTCCTCTTTTCTAA 58.321 45.455 0.00 0.00 0.00 2.10
553 554 4.074970 CAAGCAGGCTCCTCTTTTCTAAA 58.925 43.478 0.00 0.00 0.00 1.85
554 555 4.373156 AGCAGGCTCCTCTTTTCTAAAA 57.627 40.909 0.00 0.00 0.00 1.52
555 556 4.729868 AGCAGGCTCCTCTTTTCTAAAAA 58.270 39.130 0.00 0.00 0.00 1.94
595 596 2.771639 CCGAGCTCCACCGATCGAA 61.772 63.158 18.66 0.00 44.81 3.71
606 607 4.559386 GATCGAAACGCGCGCTGG 62.559 66.667 32.58 18.78 40.61 4.85
765 781 2.462255 AAATGCCGTGCTGCTTGACG 62.462 55.000 0.00 2.33 35.31 4.35
769 785 4.081030 CGTGCTGCTTGACGCCTG 62.081 66.667 0.00 0.00 38.05 4.85
770 786 3.730761 GTGCTGCTTGACGCCTGG 61.731 66.667 0.00 0.00 38.05 4.45
850 866 1.536331 CTCTATCTAACCGCGTCCTCC 59.464 57.143 4.92 0.00 0.00 4.30
940 961 2.508526 GTCAAGGTCAAGGTCAAGCAT 58.491 47.619 0.00 0.00 0.00 3.79
952 973 0.240145 TCAAGCATTCGTCGTCTCGT 59.760 50.000 0.00 0.00 0.00 4.18
957 978 1.326852 GCATTCGTCGTCTCGTCTCTA 59.673 52.381 0.00 0.00 0.00 2.43
971 992 6.017440 GTCTCGTCTCTATCTAAGCATTGTCT 60.017 42.308 0.00 0.00 0.00 3.41
984 1005 2.158449 GCATTGTCTTCACTCACCTTCG 59.842 50.000 0.00 0.00 0.00 3.79
989 1010 1.535896 TCTTCACTCACCTTCGACGAG 59.464 52.381 0.00 0.00 0.00 4.18
990 1011 1.267261 CTTCACTCACCTTCGACGAGT 59.733 52.381 0.00 0.00 40.60 4.18
993 1014 2.052157 CACTCACCTTCGACGAGTTTC 58.948 52.381 0.00 0.00 37.92 2.78
994 1015 1.328439 CTCACCTTCGACGAGTTTCG 58.672 55.000 0.00 0.00 46.93 3.46
995 1016 0.662374 TCACCTTCGACGAGTTTCGC 60.662 55.000 0.00 0.00 45.12 4.70
998 1021 0.797249 CCTTCGACGAGTTTCGCGAT 60.797 55.000 10.88 0.00 45.12 4.58
1004 1027 0.379669 ACGAGTTTCGCGATACGGAT 59.620 50.000 21.25 6.83 45.12 4.18
1039 1062 3.538841 CGCGTTTTCTCTGCGTCT 58.461 55.556 0.00 0.00 46.29 4.18
1040 1063 1.128611 CGCGTTTTCTCTGCGTCTG 59.871 57.895 0.00 0.00 46.29 3.51
1041 1064 1.154580 GCGTTTTCTCTGCGTCTGC 60.155 57.895 0.00 0.00 43.20 4.26
1064 1087 0.535797 TCTGCAGTCAGCCTCTCATG 59.464 55.000 14.67 0.00 44.83 3.07
1102 1125 0.235665 ACGCGTTCATTGCAGTCAAG 59.764 50.000 5.58 0.00 35.37 3.02
1103 1126 0.512518 CGCGTTCATTGCAGTCAAGA 59.487 50.000 0.00 0.00 35.37 3.02
1115 1139 3.439129 TGCAGTCAAGATCAAGCAGAATG 59.561 43.478 0.00 0.00 40.87 2.67
1150 1179 2.488891 CCTCCCATGTCCAACAGAACAA 60.489 50.000 0.00 0.00 0.00 2.83
1164 1193 0.168128 GAACAATGTACTGCGTGGCC 59.832 55.000 0.00 0.00 0.00 5.36
1310 1339 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
1400 1440 7.907389 TCCATGTGTTCTTACTTCTTACTCAT 58.093 34.615 0.00 0.00 0.00 2.90
1435 1475 8.661352 AAGTTTTTGTTCTGAATATTGGTTGG 57.339 30.769 0.00 0.00 0.00 3.77
1436 1476 7.791029 AGTTTTTGTTCTGAATATTGGTTGGT 58.209 30.769 0.00 0.00 0.00 3.67
1437 1477 8.919145 AGTTTTTGTTCTGAATATTGGTTGGTA 58.081 29.630 0.00 0.00 0.00 3.25
1438 1478 9.705290 GTTTTTGTTCTGAATATTGGTTGGTAT 57.295 29.630 0.00 0.00 0.00 2.73
1441 1481 9.921637 TTTGTTCTGAATATTGGTTGGTATTTC 57.078 29.630 0.00 0.00 0.00 2.17
1442 1482 7.757526 TGTTCTGAATATTGGTTGGTATTTCG 58.242 34.615 0.00 0.00 0.00 3.46
1443 1483 7.392113 TGTTCTGAATATTGGTTGGTATTTCGT 59.608 33.333 0.00 0.00 0.00 3.85
1444 1484 7.548196 TCTGAATATTGGTTGGTATTTCGTC 57.452 36.000 0.00 0.00 0.00 4.20
1445 1485 6.540914 TCTGAATATTGGTTGGTATTTCGTCC 59.459 38.462 0.00 0.00 0.00 4.79
1446 1486 5.294799 TGAATATTGGTTGGTATTTCGTCCG 59.705 40.000 0.00 0.00 0.00 4.79
1447 1487 2.547299 TTGGTTGGTATTTCGTCCGT 57.453 45.000 0.00 0.00 0.00 4.69
1448 1488 1.798283 TGGTTGGTATTTCGTCCGTG 58.202 50.000 0.00 0.00 0.00 4.94
1449 1489 1.070445 TGGTTGGTATTTCGTCCGTGT 59.930 47.619 0.00 0.00 0.00 4.49
1450 1490 2.145536 GGTTGGTATTTCGTCCGTGTT 58.854 47.619 0.00 0.00 0.00 3.32
1451 1491 2.096119 GGTTGGTATTTCGTCCGTGTTG 60.096 50.000 0.00 0.00 0.00 3.33
1452 1492 2.801679 GTTGGTATTTCGTCCGTGTTGA 59.198 45.455 0.00 0.00 0.00 3.18
1453 1493 3.109044 TGGTATTTCGTCCGTGTTGAA 57.891 42.857 0.00 0.00 0.00 2.69
1454 1494 3.666274 TGGTATTTCGTCCGTGTTGAAT 58.334 40.909 0.00 0.00 0.00 2.57
1459 1499 0.677288 TCGTCCGTGTTGAATCTGGT 59.323 50.000 0.00 0.00 0.00 4.00
1481 1521 1.333619 CCGACCGCCAAATGAATAAGG 59.666 52.381 0.00 0.00 0.00 2.69
1493 1533 8.250332 GCCAAATGAATAAGGTTAATCAGTCAA 58.750 33.333 0.00 0.00 0.00 3.18
1590 1630 8.680903 CAGAAGTGAGTTTGCATTATTATCCTT 58.319 33.333 0.00 0.00 0.00 3.36
1591 1631 9.905713 AGAAGTGAGTTTGCATTATTATCCTTA 57.094 29.630 0.00 0.00 0.00 2.69
1659 1701 4.545823 TGGTTCGACAGTTTTGATCAAC 57.454 40.909 7.89 0.00 0.00 3.18
1696 1739 8.924511 TTCAGTGATCTTTCTTGGAATTTACT 57.075 30.769 0.00 0.00 0.00 2.24
1698 1741 9.354673 TCAGTGATCTTTCTTGGAATTTACTTT 57.645 29.630 0.00 0.00 0.00 2.66
1700 1743 8.507249 AGTGATCTTTCTTGGAATTTACTTTCG 58.493 33.333 0.00 0.00 0.00 3.46
1717 1760 4.999311 ACTTTCGTAATACAGTGGTTTCCC 59.001 41.667 0.00 0.00 0.00 3.97
1720 1763 5.231702 TCGTAATACAGTGGTTTCCCTTT 57.768 39.130 0.00 0.00 0.00 3.11
1895 1938 2.730524 GGAGACCTGCCAGGAGCTC 61.731 68.421 19.90 21.20 44.23 4.09
1929 1972 3.571401 GCAGTTGATAAATGGCCTGCTAT 59.429 43.478 3.32 0.00 41.48 2.97
1952 1995 3.557686 GGATGCTGCAAAACCCAGAAATT 60.558 43.478 6.36 0.00 32.03 1.82
2003 2046 3.003763 GGACTGGAGGGGACGCTT 61.004 66.667 0.00 0.00 0.00 4.68
2135 2178 2.901042 CACCTCCGCTTCTACCCC 59.099 66.667 0.00 0.00 0.00 4.95
2319 2362 9.209297 GTATGCTTGAAATTTGTTTTGTTGTTC 57.791 29.630 0.00 0.00 0.00 3.18
2325 2368 7.108847 TGAAATTTGTTTTGTTGTTCCAGGAT 58.891 30.769 0.00 0.00 0.00 3.24
2355 2398 3.369175 AGTGCTGACATCATCTACCAGA 58.631 45.455 0.00 0.00 0.00 3.86
2553 2625 5.860941 TTGTGGCCTGTTGAATTAGAAAA 57.139 34.783 3.32 0.00 0.00 2.29
2581 2653 2.357575 ATGCAGGAGCGCTGAGTCT 61.358 57.895 18.48 3.69 46.23 3.24
2778 2850 4.944317 GCTGGATTTATTACTCATAGGGGC 59.056 45.833 0.00 0.00 0.00 5.80
2929 3001 2.423373 GGGAGCTGATTTCCTTGCCATA 60.423 50.000 0.00 0.00 35.01 2.74
3015 3087 4.336889 TCATGTCCCGTATGATTCTTCC 57.663 45.455 0.00 0.00 30.03 3.46
3018 3090 2.434336 TGTCCCGTATGATTCTTCCTGG 59.566 50.000 0.00 0.00 0.00 4.45
3044 3116 9.878599 GACATGGTTTAATCAAAGTATATTCCG 57.121 33.333 0.00 0.00 0.00 4.30
3181 3253 1.754226 TCACTGTTTGCCCTGGAAAAC 59.246 47.619 12.15 12.15 42.46 2.43
3245 3317 3.045601 ACTAGCTACAAGCACCAACTG 57.954 47.619 1.22 0.00 45.56 3.16
3689 3790 4.142687 CCTGGTTTATTCGCTGGTAGTTTG 60.143 45.833 0.00 0.00 0.00 2.93
3770 3871 2.492881 TGTTTGGGCATTACATCAGCAG 59.507 45.455 0.00 0.00 0.00 4.24
3781 3882 1.881973 ACATCAGCAGACACGCATTTT 59.118 42.857 0.00 0.00 0.00 1.82
3849 3950 8.909423 TCATTAATTAAAAATTCCCTGTCCCT 57.091 30.769 1.21 0.00 0.00 4.20
3859 3960 1.078567 CCTGTCCCTCTGCTTCTGC 60.079 63.158 0.00 0.00 40.20 4.26
3867 3968 2.008329 CCTCTGCTTCTGCTTTAGCTG 58.992 52.381 0.00 2.81 42.66 4.24
3935 4036 2.957402 TCAAGTTTCATCAGCCCTGT 57.043 45.000 0.00 0.00 0.00 4.00
4068 4169 5.547465 TGAGTTTTGAGAGGCGAAAGATTA 58.453 37.500 0.00 0.00 30.57 1.75
4299 5119 4.257731 TGCTGTATTGAGCCGAAATGTAA 58.742 39.130 0.00 0.00 38.28 2.41
4346 5166 3.496692 GGCATACATCCAACCTAGATGCA 60.497 47.826 8.84 0.00 44.08 3.96
4466 5289 4.630505 CAGTGGACTTGAAGTCATGATCAG 59.369 45.833 24.95 5.94 46.79 2.90
4513 5336 7.658575 CCCATTCTTCACTCACATTTGAAAATT 59.341 33.333 0.00 0.00 31.41 1.82
4519 5342 9.734620 CTTCACTCACATTTGAAAATTAAGTCA 57.265 29.630 0.00 0.00 31.41 3.41
4659 5482 3.828875 ACTGGTATGCCTCTTCTAAGC 57.171 47.619 0.16 0.00 35.27 3.09
4985 5808 6.606395 ACTCGGTACAAGGTATGAACTTATCT 59.394 38.462 0.00 0.00 0.00 1.98
5096 5939 3.628487 ACCGTATCTACTCAGTGAAGAGC 59.372 47.826 0.00 0.00 39.26 4.09
5211 6117 8.611757 CATGTGTTCTTTGTTCATATATCGGAA 58.388 33.333 0.00 0.00 0.00 4.30
5294 6200 1.005340 GCTTCTCAGATTGCCGACAG 58.995 55.000 0.00 0.00 0.00 3.51
5456 6362 0.611714 TCTTCTGATGCTCAGCTGCA 59.388 50.000 9.47 4.72 43.95 4.41
5503 6409 2.068821 ATCCCAGAGCCAGTGCGAT 61.069 57.895 0.00 0.00 44.33 4.58
5599 6511 3.260380 CCAGAGATTTCATCGGGCTCTAT 59.740 47.826 0.00 0.00 34.41 1.98
5607 6519 0.972983 ATCGGGCTCTATATGGCGCT 60.973 55.000 7.64 0.00 38.88 5.92
5614 6526 2.166829 CTCTATATGGCGCTCAGAGGT 58.833 52.381 7.64 0.00 31.15 3.85
5685 6644 0.848942 GAGCGATGATGTGCGTACAG 59.151 55.000 12.93 0.00 40.79 2.74
5690 6649 1.588404 GATGATGTGCGTACAGAACCG 59.412 52.381 12.93 0.00 40.79 4.44
5691 6650 0.599060 TGATGTGCGTACAGAACCGA 59.401 50.000 12.93 0.00 40.79 4.69
5703 6662 4.853924 ACAGAACCGATTCTTTTTGCAT 57.146 36.364 0.00 0.00 42.91 3.96
5716 6675 1.587547 TTTGCATGTGCGTGTCACTA 58.412 45.000 0.65 0.00 45.81 2.74
5724 6683 3.833442 TGTGCGTGTCACTAGTTATGAG 58.167 45.455 0.65 0.00 45.81 2.90
5745 6704 2.285256 GCGCTCAATCACATTGTAGACG 60.285 50.000 0.00 0.00 41.02 4.18
5758 6717 3.251479 TGTAGACGCAGCATGAATCTT 57.749 42.857 0.00 0.00 39.69 2.40
5799 6758 2.418746 CCCTGTAGTGTAGGTGTGCATC 60.419 54.545 0.00 0.00 33.31 3.91
5800 6759 2.530177 CTGTAGTGTAGGTGTGCATCG 58.470 52.381 0.00 0.00 0.00 3.84
5801 6760 1.890489 TGTAGTGTAGGTGTGCATCGT 59.110 47.619 0.00 0.00 0.00 3.73
5819 6779 3.242518 TCGTCGTGCTGTTTATTCTGAG 58.757 45.455 0.00 0.00 0.00 3.35
5847 6812 8.311395 TGAAGAGAAGGTTATAGATGTGTGAT 57.689 34.615 0.00 0.00 0.00 3.06
5848 6813 8.200120 TGAAGAGAAGGTTATAGATGTGTGATG 58.800 37.037 0.00 0.00 0.00 3.07
5849 6814 7.904558 AGAGAAGGTTATAGATGTGTGATGA 57.095 36.000 0.00 0.00 0.00 2.92
5860 6825 4.579340 AGATGTGTGATGAATCCTGCAATC 59.421 41.667 0.00 0.00 0.00 2.67
5879 6844 6.883756 TGCAATCTACACCATGTTTCATCTTA 59.116 34.615 0.00 0.00 0.00 2.10
5905 6870 4.449405 TGTATCGTCGTGCAAAAATCAAGA 59.551 37.500 0.00 0.00 0.00 3.02
5913 6878 3.968724 GTGCAAAAATCAAGACGTCTGAC 59.031 43.478 20.85 6.49 0.00 3.51
5914 6879 3.876914 TGCAAAAATCAAGACGTCTGACT 59.123 39.130 20.85 6.00 0.00 3.41
5991 8430 3.349006 CGGGCAGTGACAGTGTGC 61.349 66.667 11.85 0.00 36.42 4.57
6022 8471 0.389037 CTAGTGCGTCTGAAGCAGCA 60.389 55.000 18.35 8.43 46.10 4.41
6023 8472 0.389037 TAGTGCGTCTGAAGCAGCAG 60.389 55.000 18.35 0.00 46.10 4.24
6024 8473 2.357881 TGCGTCTGAAGCAGCAGG 60.358 61.111 14.20 0.00 40.01 4.85
6025 8474 3.797546 GCGTCTGAAGCAGCAGGC 61.798 66.667 10.72 3.52 45.30 4.85
6061 8511 1.378250 CAGAGCTTGGGCCTCCTTG 60.378 63.158 4.53 0.00 39.73 3.61
6071 8521 1.070786 GCCTCCTTGACGGTGTTGA 59.929 57.895 0.00 0.00 0.00 3.18
6073 8523 0.105964 CCTCCTTGACGGTGTTGACA 59.894 55.000 0.00 0.00 0.00 3.58
6074 8524 1.502231 CTCCTTGACGGTGTTGACAG 58.498 55.000 0.00 0.00 0.00 3.51
6075 8525 0.828022 TCCTTGACGGTGTTGACAGT 59.172 50.000 0.00 0.00 32.63 3.55
6076 8526 1.208535 TCCTTGACGGTGTTGACAGTT 59.791 47.619 0.00 0.00 29.77 3.16
6078 8528 1.330521 CTTGACGGTGTTGACAGTTGG 59.669 52.381 0.00 0.00 29.77 3.77
6079 8529 1.092921 TGACGGTGTTGACAGTTGGC 61.093 55.000 0.00 0.00 29.77 4.52
6080 8530 1.078072 ACGGTGTTGACAGTTGGCA 60.078 52.632 0.00 0.00 0.00 4.92
6081 8531 1.095228 ACGGTGTTGACAGTTGGCAG 61.095 55.000 0.00 0.00 32.66 4.85
6083 8533 1.383456 GGTGTTGACAGTTGGCAGCA 61.383 55.000 3.63 0.00 42.12 4.41
6105 8555 2.672996 GCCTCGCTGCCCTCAAAA 60.673 61.111 0.00 0.00 0.00 2.44
6122 8572 5.976534 CCTCAAAATGTTTGACGAAATGACA 59.023 36.000 0.00 0.00 0.00 3.58
6129 8579 9.528018 AAATGTTTGACGAAATGACACTTAATT 57.472 25.926 0.00 0.00 0.00 1.40
6203 8708 2.216203 GCGGCAGCACAAGAAAAAC 58.784 52.632 3.18 0.00 44.35 2.43
6204 8709 0.527385 GCGGCAGCACAAGAAAAACA 60.527 50.000 3.18 0.00 44.35 2.83
6219 8725 3.923017 AAAACATGCTGAAGTACCTGC 57.077 42.857 0.00 0.00 0.00 4.85
6231 8737 5.129634 TGAAGTACCTGCAGTGAATTGAAA 58.870 37.500 13.81 0.00 0.00 2.69
6232 8738 5.592282 TGAAGTACCTGCAGTGAATTGAAAA 59.408 36.000 13.81 0.00 0.00 2.29
6244 8751 7.390162 GCAGTGAATTGAAAATTTCCCCATTTA 59.610 33.333 3.00 0.00 0.00 1.40
6290 8797 5.125417 GTGCTAGAGTTTTCCCATTTGCATA 59.875 40.000 0.00 0.00 0.00 3.14
6432 9286 3.855895 GCTCCTTTTAACCGCCTGTTTTC 60.856 47.826 0.00 0.00 38.42 2.29
6467 9321 6.436847 TGATAGATTAGCCTGAGGAATCAGAG 59.563 42.308 0.65 0.00 39.99 3.35
6471 9325 0.179051 GCCTGAGGAATCAGAGCCTG 60.179 60.000 0.65 0.00 39.99 4.85
6511 9365 7.385752 AGCATCTGAAACATTGTTTTTATGTGG 59.614 33.333 15.54 5.04 36.41 4.17
6517 9371 9.775854 TGAAACATTGTTTTTATGTGGATGATT 57.224 25.926 15.54 0.00 36.41 2.57
6548 9402 3.369388 GGACCCCCTCCCTCCTCT 61.369 72.222 0.00 0.00 31.83 3.69
6610 9464 3.809279 TGAGTATTGTTATGAGCGGCATG 59.191 43.478 1.45 0.00 37.87 4.06
6622 9476 1.841663 GCGGCATGTATTACAGCCCG 61.842 60.000 23.21 23.21 43.81 6.13
6639 9493 1.987855 CGGACAGTTAGGGGCCTGA 60.988 63.158 0.84 0.00 32.93 3.86
6789 9643 2.837411 GGAGACCTAACCCTAGCCC 58.163 63.158 0.00 0.00 0.00 5.19
6798 9652 3.779083 CCCTAGCCCCCTCCTCCA 61.779 72.222 0.00 0.00 0.00 3.86
6828 9685 4.711949 CTTCCTGCCACAGCCGCT 62.712 66.667 0.00 0.00 38.69 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 106 9.866655 CCTATTTGTACATATTGGGCCATATAT 57.133 33.333 7.26 10.89 0.00 0.86
106 107 7.777910 GCCTATTTGTACATATTGGGCCATATA 59.222 37.037 21.56 8.92 0.00 0.86
107 108 6.607198 GCCTATTTGTACATATTGGGCCATAT 59.393 38.462 21.56 6.75 0.00 1.78
108 109 5.949354 GCCTATTTGTACATATTGGGCCATA 59.051 40.000 21.56 2.27 0.00 2.74
109 110 4.772100 GCCTATTTGTACATATTGGGCCAT 59.228 41.667 21.56 0.00 0.00 4.40
110 111 4.141041 AGCCTATTTGTACATATTGGGCCA 60.141 41.667 24.59 0.00 37.98 5.36
111 112 4.407365 AGCCTATTTGTACATATTGGGCC 58.593 43.478 24.59 13.47 37.98 5.80
112 113 7.519032 TTTAGCCTATTTGTACATATTGGGC 57.481 36.000 21.56 22.16 37.57 5.36
113 114 9.965824 CTTTTTAGCCTATTTGTACATATTGGG 57.034 33.333 21.56 16.16 0.00 4.12
114 115 9.463443 GCTTTTTAGCCTATTTGTACATATTGG 57.537 33.333 17.92 17.92 0.00 3.16
115 116 9.169468 CGCTTTTTAGCCTATTTGTACATATTG 57.831 33.333 4.06 2.80 0.00 1.90
116 117 8.899771 ACGCTTTTTAGCCTATTTGTACATATT 58.100 29.630 4.06 0.00 0.00 1.28
117 118 8.446599 ACGCTTTTTAGCCTATTTGTACATAT 57.553 30.769 0.00 0.00 0.00 1.78
118 119 7.852971 ACGCTTTTTAGCCTATTTGTACATA 57.147 32.000 0.00 0.00 0.00 2.29
119 120 6.753107 ACGCTTTTTAGCCTATTTGTACAT 57.247 33.333 0.00 0.00 0.00 2.29
120 121 6.205076 TGAACGCTTTTTAGCCTATTTGTACA 59.795 34.615 0.00 0.00 0.00 2.90
121 122 6.522165 GTGAACGCTTTTTAGCCTATTTGTAC 59.478 38.462 0.00 0.00 0.00 2.90
122 123 6.428771 AGTGAACGCTTTTTAGCCTATTTGTA 59.571 34.615 0.00 0.00 0.00 2.41
123 124 5.240844 AGTGAACGCTTTTTAGCCTATTTGT 59.759 36.000 0.00 0.00 0.00 2.83
124 125 5.569059 CAGTGAACGCTTTTTAGCCTATTTG 59.431 40.000 0.00 0.00 0.00 2.32
125 126 5.699839 CAGTGAACGCTTTTTAGCCTATTT 58.300 37.500 0.00 0.00 0.00 1.40
126 127 4.379499 GCAGTGAACGCTTTTTAGCCTATT 60.379 41.667 0.00 0.00 0.00 1.73
127 128 3.127030 GCAGTGAACGCTTTTTAGCCTAT 59.873 43.478 0.00 0.00 0.00 2.57
128 129 2.482721 GCAGTGAACGCTTTTTAGCCTA 59.517 45.455 0.00 0.00 0.00 3.93
129 130 1.266989 GCAGTGAACGCTTTTTAGCCT 59.733 47.619 0.00 0.00 0.00 4.58
130 131 1.686464 GCAGTGAACGCTTTTTAGCC 58.314 50.000 0.00 0.00 0.00 3.93
131 132 1.318251 CGCAGTGAACGCTTTTTAGC 58.682 50.000 0.00 0.00 0.00 3.09
132 133 2.663279 ACGCAGTGAACGCTTTTTAG 57.337 45.000 0.00 0.00 42.51 1.85
146 147 4.678509 TTTAGCCTGTTATTTGACGCAG 57.321 40.909 0.00 0.00 0.00 5.18
147 148 5.440234 TTTTTAGCCTGTTATTTGACGCA 57.560 34.783 0.00 0.00 0.00 5.24
148 149 7.305993 GCATATTTTTAGCCTGTTATTTGACGC 60.306 37.037 0.00 0.00 0.00 5.19
149 150 7.700234 TGCATATTTTTAGCCTGTTATTTGACG 59.300 33.333 0.00 0.00 0.00 4.35
150 151 8.925161 TGCATATTTTTAGCCTGTTATTTGAC 57.075 30.769 0.00 0.00 0.00 3.18
151 152 7.706179 GCTGCATATTTTTAGCCTGTTATTTGA 59.294 33.333 0.00 0.00 0.00 2.69
152 153 7.844482 GCTGCATATTTTTAGCCTGTTATTTG 58.156 34.615 0.00 0.00 0.00 2.32
162 163 2.543653 CGGTGGGCTGCATATTTTTAGC 60.544 50.000 0.50 0.00 35.49 3.09
163 164 2.687935 ACGGTGGGCTGCATATTTTTAG 59.312 45.455 0.50 0.00 0.00 1.85
164 165 2.425312 CACGGTGGGCTGCATATTTTTA 59.575 45.455 0.50 0.00 0.00 1.52
165 166 1.204467 CACGGTGGGCTGCATATTTTT 59.796 47.619 0.50 0.00 0.00 1.94
166 167 0.817013 CACGGTGGGCTGCATATTTT 59.183 50.000 0.50 0.00 0.00 1.82
167 168 1.666209 GCACGGTGGGCTGCATATTT 61.666 55.000 10.60 0.00 33.31 1.40
168 169 2.120909 GCACGGTGGGCTGCATATT 61.121 57.895 10.60 0.00 33.31 1.28
169 170 1.695114 TAGCACGGTGGGCTGCATAT 61.695 55.000 10.60 0.00 42.62 1.78
170 171 1.904990 TTAGCACGGTGGGCTGCATA 61.905 55.000 10.60 0.00 42.62 3.14
171 172 2.762969 TTTAGCACGGTGGGCTGCAT 62.763 55.000 10.60 0.00 42.62 3.96
172 173 3.483788 TTTAGCACGGTGGGCTGCA 62.484 57.895 10.60 0.00 42.62 4.41
173 174 2.671619 TTTAGCACGGTGGGCTGC 60.672 61.111 10.60 0.00 42.62 5.25
174 175 2.677003 CGTTTAGCACGGTGGGCTG 61.677 63.158 10.60 0.00 45.89 4.85
175 176 2.358247 CGTTTAGCACGGTGGGCT 60.358 61.111 10.60 4.18 45.89 5.19
183 184 2.255881 ACGTTGGCCCGTTTAGCAC 61.256 57.895 0.00 0.00 37.96 4.40
184 185 2.111460 ACGTTGGCCCGTTTAGCA 59.889 55.556 0.00 0.00 37.96 3.49
185 186 2.559330 CACGTTGGCCCGTTTAGC 59.441 61.111 4.13 0.00 39.45 3.09
186 187 2.559330 GCACGTTGGCCCGTTTAG 59.441 61.111 4.13 0.00 39.45 1.85
200 201 1.375780 TTAGTAAACGGGCCGGCAC 60.376 57.895 31.78 26.77 0.00 5.01
201 202 1.375780 GTTAGTAAACGGGCCGGCA 60.376 57.895 31.78 11.85 0.00 5.69
202 203 1.078918 AGTTAGTAAACGGGCCGGC 60.079 57.895 31.78 21.18 40.73 6.13
203 204 0.741927 CCAGTTAGTAAACGGGCCGG 60.742 60.000 31.78 12.53 42.77 6.13
204 205 0.741927 CCCAGTTAGTAAACGGGCCG 60.742 60.000 27.06 27.06 46.22 6.13
205 206 3.164026 CCCAGTTAGTAAACGGGCC 57.836 57.895 0.00 0.00 46.22 5.80
207 208 0.741927 CGGCCCAGTTAGTAAACGGG 60.742 60.000 11.93 11.93 46.88 5.28
208 209 0.037046 ACGGCCCAGTTAGTAAACGG 60.037 55.000 0.00 0.00 40.73 4.44
209 210 1.073177 CACGGCCCAGTTAGTAAACG 58.927 55.000 0.00 0.00 40.73 3.60
210 211 0.800631 GCACGGCCCAGTTAGTAAAC 59.199 55.000 0.00 0.00 35.72 2.01
211 212 0.321830 GGCACGGCCCAGTTAGTAAA 60.322 55.000 0.00 0.00 44.06 2.01
212 213 1.297364 GGCACGGCCCAGTTAGTAA 59.703 57.895 0.00 0.00 44.06 2.24
213 214 2.983791 GGCACGGCCCAGTTAGTA 59.016 61.111 0.00 0.00 44.06 1.82
264 265 1.706443 GATTACTATACGGGCCGTGC 58.294 55.000 39.80 15.03 41.39 5.34
265 266 1.267806 ACGATTACTATACGGGCCGTG 59.732 52.381 39.80 26.05 41.39 4.94
266 267 1.267806 CACGATTACTATACGGGCCGT 59.732 52.381 35.91 35.91 44.35 5.68
267 268 1.973138 CACGATTACTATACGGGCCG 58.027 55.000 27.06 27.06 0.00 6.13
270 271 1.891150 AGGGCACGATTACTATACGGG 59.109 52.381 0.00 0.00 0.00 5.28
271 272 2.352421 CCAGGGCACGATTACTATACGG 60.352 54.545 0.00 0.00 0.00 4.02
272 273 2.925306 GCCAGGGCACGATTACTATACG 60.925 54.545 5.20 0.00 41.49 3.06
273 274 2.685100 GCCAGGGCACGATTACTATAC 58.315 52.381 5.20 0.00 41.49 1.47
274 275 1.271379 CGCCAGGGCACGATTACTATA 59.729 52.381 11.42 0.00 42.06 1.31
275 276 0.033504 CGCCAGGGCACGATTACTAT 59.966 55.000 11.42 0.00 42.06 2.12
276 277 1.440060 CGCCAGGGCACGATTACTA 59.560 57.895 11.42 0.00 42.06 1.82
277 278 2.186903 CGCCAGGGCACGATTACT 59.813 61.111 11.42 0.00 42.06 2.24
278 279 2.895372 CCGCCAGGGCACGATTAC 60.895 66.667 11.42 0.00 42.06 1.89
302 303 3.476031 ATAATCGTGCCTGGCCCGG 62.476 63.158 22.84 9.24 0.00 5.73
303 304 2.111043 ATAATCGTGCCTGGCCCG 59.889 61.111 17.67 17.67 0.00 6.13
304 305 0.250901 ATCATAATCGTGCCTGGCCC 60.251 55.000 17.53 2.94 0.00 5.80
305 306 0.877071 CATCATAATCGTGCCTGGCC 59.123 55.000 17.53 6.66 0.00 5.36
306 307 0.877071 CCATCATAATCGTGCCTGGC 59.123 55.000 12.87 12.87 0.00 4.85
307 308 1.527034 CCCATCATAATCGTGCCTGG 58.473 55.000 0.00 0.00 0.00 4.45
308 309 0.877071 GCCCATCATAATCGTGCCTG 59.123 55.000 0.00 0.00 0.00 4.85
309 310 0.250901 GGCCCATCATAATCGTGCCT 60.251 55.000 0.00 0.00 34.61 4.75
310 311 1.577328 CGGCCCATCATAATCGTGCC 61.577 60.000 0.00 0.00 0.00 5.01
311 312 0.602638 TCGGCCCATCATAATCGTGC 60.603 55.000 0.00 0.00 0.00 5.34
312 313 1.432514 CTCGGCCCATCATAATCGTG 58.567 55.000 0.00 0.00 0.00 4.35
313 314 0.320771 GCTCGGCCCATCATAATCGT 60.321 55.000 0.00 0.00 0.00 3.73
314 315 1.021390 GGCTCGGCCCATCATAATCG 61.021 60.000 0.00 0.00 44.06 3.34
315 316 2.859992 GGCTCGGCCCATCATAATC 58.140 57.895 0.00 0.00 44.06 1.75
351 352 2.414785 GCATACCTGGCCAAACGGG 61.415 63.158 7.01 7.12 42.81 5.28
352 353 1.378514 AGCATACCTGGCCAAACGG 60.379 57.895 7.01 7.56 0.00 4.44
353 354 1.802636 CAGCATACCTGGCCAAACG 59.197 57.895 7.01 0.00 37.93 3.60
354 355 1.250154 TGCAGCATACCTGGCCAAAC 61.250 55.000 7.01 0.00 42.03 2.93
355 356 0.324552 ATGCAGCATACCTGGCCAAA 60.325 50.000 7.01 0.00 42.03 3.28
356 357 0.550432 TATGCAGCATACCTGGCCAA 59.450 50.000 11.33 0.00 42.03 4.52
357 358 0.109153 CTATGCAGCATACCTGGCCA 59.891 55.000 11.33 4.71 42.03 5.36
358 359 0.109342 ACTATGCAGCATACCTGGCC 59.891 55.000 11.33 0.00 42.03 5.36
359 360 1.233019 CACTATGCAGCATACCTGGC 58.767 55.000 11.33 0.00 42.03 4.85
360 361 1.233019 GCACTATGCAGCATACCTGG 58.767 55.000 11.33 4.53 44.26 4.45
371 372 1.638467 GCGCTACACTGCACTATGC 59.362 57.895 0.00 0.00 45.29 3.14
372 373 1.154205 GGGCGCTACACTGCACTATG 61.154 60.000 7.64 0.00 0.00 2.23
373 374 1.144057 GGGCGCTACACTGCACTAT 59.856 57.895 7.64 0.00 0.00 2.12
374 375 2.577059 GGGCGCTACACTGCACTA 59.423 61.111 7.64 0.00 0.00 2.74
375 376 4.742201 CGGGCGCTACACTGCACT 62.742 66.667 7.64 0.00 30.50 4.40
389 390 2.847234 TGGTGCCCTATAGCCGGG 60.847 66.667 2.18 0.00 44.89 5.73
390 391 2.426023 GTGGTGCCCTATAGCCGG 59.574 66.667 0.00 0.00 0.00 6.13
391 392 2.426023 GGTGGTGCCCTATAGCCG 59.574 66.667 0.00 0.00 0.00 5.52
400 401 2.835895 ACCGTTTTGGGTGGTGCC 60.836 61.111 0.00 0.00 44.64 5.01
401 402 1.826487 AGACCGTTTTGGGTGGTGC 60.826 57.895 0.00 0.00 44.64 5.01
402 403 0.750182 ACAGACCGTTTTGGGTGGTG 60.750 55.000 0.00 0.00 44.64 4.17
403 404 0.033894 AACAGACCGTTTTGGGTGGT 60.034 50.000 0.00 0.00 44.64 4.16
404 405 1.970092 TAACAGACCGTTTTGGGTGG 58.030 50.000 0.00 0.00 44.64 4.61
405 406 2.882137 ACATAACAGACCGTTTTGGGTG 59.118 45.455 0.00 0.00 44.64 4.61
406 407 2.882137 CACATAACAGACCGTTTTGGGT 59.118 45.455 0.00 0.00 44.64 4.51
407 408 3.142951 TCACATAACAGACCGTTTTGGG 58.857 45.455 0.00 0.00 44.64 4.12
408 409 4.822036 TTCACATAACAGACCGTTTTGG 57.178 40.909 0.00 0.00 39.91 3.28
409 410 7.692908 AAAATTCACATAACAGACCGTTTTG 57.307 32.000 0.00 0.00 40.99 2.44
431 432 7.230747 TCATGATCTAACCTGGTCTTGAAAAA 58.769 34.615 0.00 0.00 0.00 1.94
432 433 6.778821 TCATGATCTAACCTGGTCTTGAAAA 58.221 36.000 0.00 0.00 0.00 2.29
433 434 6.373005 TCATGATCTAACCTGGTCTTGAAA 57.627 37.500 0.00 0.00 0.00 2.69
434 435 6.566079 ATCATGATCTAACCTGGTCTTGAA 57.434 37.500 1.18 0.00 31.40 2.69
435 436 6.566079 AATCATGATCTAACCTGGTCTTGA 57.434 37.500 9.06 1.74 31.92 3.02
436 437 6.825213 TCAAATCATGATCTAACCTGGTCTTG 59.175 38.462 9.06 5.43 31.50 3.02
437 438 6.962182 TCAAATCATGATCTAACCTGGTCTT 58.038 36.000 9.06 0.00 31.50 3.01
438 439 6.566079 TCAAATCATGATCTAACCTGGTCT 57.434 37.500 9.06 0.00 31.50 3.85
449 450 8.555279 ACCTCAGGGTGAAATCAAATCATGATC 61.555 40.741 9.06 0.00 45.46 2.92
450 451 6.809072 ACCTCAGGGTGAAATCAAATCATGAT 60.809 38.462 1.18 1.18 46.91 2.45
451 452 4.951715 CCTCAGGGTGAAATCAAATCATGA 59.048 41.667 0.00 0.00 43.67 3.07
452 453 4.708421 ACCTCAGGGTGAAATCAAATCATG 59.292 41.667 0.00 0.00 45.43 3.07
453 454 4.939255 ACCTCAGGGTGAAATCAAATCAT 58.061 39.130 0.00 0.00 45.43 2.45
454 455 4.387026 ACCTCAGGGTGAAATCAAATCA 57.613 40.909 0.00 0.00 45.43 2.57
467 468 6.039047 CAGAAATCACATATTTGACCTCAGGG 59.961 42.308 0.00 0.00 38.88 4.45
468 469 6.600822 ACAGAAATCACATATTTGACCTCAGG 59.399 38.462 0.00 0.00 0.00 3.86
469 470 7.201679 GGACAGAAATCACATATTTGACCTCAG 60.202 40.741 0.00 0.00 0.00 3.35
470 471 6.599244 GGACAGAAATCACATATTTGACCTCA 59.401 38.462 0.00 0.00 0.00 3.86
471 472 6.238211 CGGACAGAAATCACATATTTGACCTC 60.238 42.308 0.00 0.00 0.00 3.85
472 473 5.586243 CGGACAGAAATCACATATTTGACCT 59.414 40.000 0.00 0.00 0.00 3.85
473 474 5.220854 CCGGACAGAAATCACATATTTGACC 60.221 44.000 0.00 0.00 0.00 4.02
474 475 5.220854 CCCGGACAGAAATCACATATTTGAC 60.221 44.000 0.73 0.00 0.00 3.18
475 476 4.881273 CCCGGACAGAAATCACATATTTGA 59.119 41.667 0.73 0.00 0.00 2.69
476 477 4.036734 CCCCGGACAGAAATCACATATTTG 59.963 45.833 0.73 0.00 0.00 2.32
477 478 4.207165 CCCCGGACAGAAATCACATATTT 58.793 43.478 0.73 0.00 0.00 1.40
478 479 3.820557 CCCCGGACAGAAATCACATATT 58.179 45.455 0.73 0.00 0.00 1.28
479 480 2.487265 GCCCCGGACAGAAATCACATAT 60.487 50.000 0.73 0.00 0.00 1.78
480 481 1.134220 GCCCCGGACAGAAATCACATA 60.134 52.381 0.73 0.00 0.00 2.29
481 482 0.394352 GCCCCGGACAGAAATCACAT 60.394 55.000 0.73 0.00 0.00 3.21
482 483 1.002624 GCCCCGGACAGAAATCACA 60.003 57.895 0.73 0.00 0.00 3.58
483 484 2.106683 CGCCCCGGACAGAAATCAC 61.107 63.158 0.73 0.00 0.00 3.06
484 485 2.267642 CGCCCCGGACAGAAATCA 59.732 61.111 0.73 0.00 0.00 2.57
485 486 2.106683 CACGCCCCGGACAGAAATC 61.107 63.158 0.73 0.00 0.00 2.17
486 487 2.046314 CACGCCCCGGACAGAAAT 60.046 61.111 0.73 0.00 0.00 2.17
529 530 0.112025 AAAAGAGGAGCCTGCTTGCT 59.888 50.000 0.00 0.00 46.37 3.91
530 531 0.525311 GAAAAGAGGAGCCTGCTTGC 59.475 55.000 0.00 0.00 0.00 4.01
531 532 2.197283 AGAAAAGAGGAGCCTGCTTG 57.803 50.000 0.00 0.00 0.00 4.01
532 533 4.373156 TTTAGAAAAGAGGAGCCTGCTT 57.627 40.909 0.00 0.00 0.00 3.91
533 534 4.373156 TTTTAGAAAAGAGGAGCCTGCT 57.627 40.909 0.00 0.00 0.00 4.24
583 584 2.505337 CGCGTTTCGATCGGTGGA 60.505 61.111 16.41 0.00 41.67 4.02
595 596 3.566853 CATCATCCAGCGCGCGTT 61.567 61.111 32.35 24.65 0.00 4.84
606 607 0.604780 CCCCTCCACGCATCATCATC 60.605 60.000 0.00 0.00 0.00 2.92
698 714 4.722535 AGGAGAAGGAGGGGCGCA 62.723 66.667 10.83 0.00 0.00 6.09
709 725 2.038007 AGCGGAGGAGCAGGAGAA 59.962 61.111 0.00 0.00 40.15 2.87
770 786 4.440127 CAAGCACAATGGCCGGGC 62.440 66.667 23.42 23.42 0.00 6.13
802 818 1.432270 GGTGTAATCTCTGCGCCTGC 61.432 60.000 4.18 0.00 37.34 4.85
850 866 1.003118 TCACGGTCTCAAGGAAATGGG 59.997 52.381 0.00 0.00 0.00 4.00
940 961 3.162202 AGATAGAGACGAGACGACGAA 57.838 47.619 0.00 0.00 37.03 3.85
952 973 7.340487 TGAGTGAAGACAATGCTTAGATAGAGA 59.660 37.037 0.00 0.00 0.00 3.10
957 978 5.046014 AGGTGAGTGAAGACAATGCTTAGAT 60.046 40.000 0.00 0.00 0.00 1.98
971 992 1.315690 ACTCGTCGAAGGTGAGTGAA 58.684 50.000 9.30 0.00 41.21 3.18
984 1005 0.247814 TCCGTATCGCGAAACTCGTC 60.248 55.000 15.24 0.00 42.81 4.20
989 1010 1.450905 GCAGTATCCGTATCGCGAAAC 59.549 52.381 15.24 3.08 44.77 2.78
990 1011 1.601162 GGCAGTATCCGTATCGCGAAA 60.601 52.381 15.24 0.00 44.77 3.46
993 1014 0.454620 GAGGCAGTATCCGTATCGCG 60.455 60.000 0.00 0.00 40.95 5.87
994 1015 0.882474 AGAGGCAGTATCCGTATCGC 59.118 55.000 0.00 0.00 0.00 4.58
995 1016 1.401670 GCAGAGGCAGTATCCGTATCG 60.402 57.143 0.00 0.00 40.72 2.92
998 1021 1.452953 CGGCAGAGGCAGTATCCGTA 61.453 60.000 0.00 0.00 43.71 4.02
1004 1027 2.265739 CAAGCGGCAGAGGCAGTA 59.734 61.111 1.45 0.00 43.71 2.74
1039 1062 3.046087 GCTGACTGCAGAAGCGCA 61.046 61.111 23.35 9.02 45.17 6.09
1040 1063 3.797546 GGCTGACTGCAGAAGCGC 61.798 66.667 27.76 20.19 45.17 5.92
1041 1064 2.047465 AGGCTGACTGCAGAAGCG 60.047 61.111 27.76 13.63 45.17 4.68
1042 1065 0.740516 GAGAGGCTGACTGCAGAAGC 60.741 60.000 27.36 27.36 45.17 3.86
1043 1066 0.607112 TGAGAGGCTGACTGCAGAAG 59.393 55.000 23.35 17.91 45.17 2.85
1044 1067 1.066358 CATGAGAGGCTGACTGCAGAA 60.066 52.381 23.35 7.24 45.17 3.02
1064 1087 3.427243 CGTGTACTGCTAGACTAGTTGC 58.573 50.000 11.15 3.17 0.00 4.17
1102 1125 3.119708 GGTGTTGTCCATTCTGCTTGATC 60.120 47.826 0.00 0.00 0.00 2.92
1103 1126 2.821969 GGTGTTGTCCATTCTGCTTGAT 59.178 45.455 0.00 0.00 0.00 2.57
1115 1139 1.678970 GGAGGCCATGGTGTTGTCC 60.679 63.158 14.67 8.72 0.00 4.02
1131 1155 3.156293 CATTGTTCTGTTGGACATGGGA 58.844 45.455 0.00 0.00 0.00 4.37
1141 1165 2.548057 CCACGCAGTACATTGTTCTGTT 59.452 45.455 20.29 8.81 41.61 3.16
1150 1179 0.462581 CAGATGGCCACGCAGTACAT 60.463 55.000 8.16 0.00 41.61 2.29
1164 1193 3.746949 GAGGTGGGGAGCGCAGATG 62.747 68.421 11.47 0.00 0.00 2.90
1310 1339 1.602377 CCGTCCCAAAAGTTGAGTCAC 59.398 52.381 0.00 0.00 0.00 3.67
1427 1467 2.745281 CACGGACGAAATACCAACCAAT 59.255 45.455 0.00 0.00 0.00 3.16
1428 1468 2.144730 CACGGACGAAATACCAACCAA 58.855 47.619 0.00 0.00 0.00 3.67
1429 1469 1.070445 ACACGGACGAAATACCAACCA 59.930 47.619 0.00 0.00 0.00 3.67
1430 1470 1.799544 ACACGGACGAAATACCAACC 58.200 50.000 0.00 0.00 0.00 3.77
1431 1471 2.801679 TCAACACGGACGAAATACCAAC 59.198 45.455 0.00 0.00 0.00 3.77
1432 1472 3.109044 TCAACACGGACGAAATACCAA 57.891 42.857 0.00 0.00 0.00 3.67
1433 1473 2.816204 TCAACACGGACGAAATACCA 57.184 45.000 0.00 0.00 0.00 3.25
1434 1474 3.930848 AGATTCAACACGGACGAAATACC 59.069 43.478 0.00 0.00 0.00 2.73
1435 1475 4.201685 CCAGATTCAACACGGACGAAATAC 60.202 45.833 0.00 0.00 0.00 1.89
1436 1476 3.930229 CCAGATTCAACACGGACGAAATA 59.070 43.478 0.00 0.00 0.00 1.40
1437 1477 2.742053 CCAGATTCAACACGGACGAAAT 59.258 45.455 0.00 0.00 0.00 2.17
1438 1478 2.139917 CCAGATTCAACACGGACGAAA 58.860 47.619 0.00 0.00 0.00 3.46
1439 1479 1.069513 ACCAGATTCAACACGGACGAA 59.930 47.619 0.00 0.00 0.00 3.85
1440 1480 0.677288 ACCAGATTCAACACGGACGA 59.323 50.000 0.00 0.00 0.00 4.20
1441 1481 1.068474 GACCAGATTCAACACGGACG 58.932 55.000 0.00 0.00 0.00 4.79
1442 1482 1.439679 GGACCAGATTCAACACGGAC 58.560 55.000 0.00 0.00 0.00 4.79
1443 1483 0.323629 GGGACCAGATTCAACACGGA 59.676 55.000 0.00 0.00 0.00 4.69
1444 1484 1.019278 CGGGACCAGATTCAACACGG 61.019 60.000 0.00 0.00 0.00 4.94
1445 1485 0.037697 TCGGGACCAGATTCAACACG 60.038 55.000 0.00 0.00 0.00 4.49
1446 1486 1.439679 GTCGGGACCAGATTCAACAC 58.560 55.000 0.00 0.00 0.00 3.32
1447 1487 3.927555 GTCGGGACCAGATTCAACA 57.072 52.632 0.00 0.00 0.00 3.33
1459 1499 0.542333 TATTCATTTGGCGGTCGGGA 59.458 50.000 0.00 0.00 0.00 5.14
1481 1521 7.965107 CCAGATGCTTTTAGTTGACTGATTAAC 59.035 37.037 0.00 0.00 0.00 2.01
1537 1577 4.352001 AGGATCTATTTGCCTATTGCCAGA 59.648 41.667 0.00 0.00 40.16 3.86
1538 1578 4.458295 CAGGATCTATTTGCCTATTGCCAG 59.542 45.833 0.00 0.00 40.16 4.85
1539 1579 4.141181 ACAGGATCTATTTGCCTATTGCCA 60.141 41.667 0.00 0.00 40.16 4.92
1541 1581 5.532406 TGAACAGGATCTATTTGCCTATTGC 59.468 40.000 0.00 0.00 41.77 3.56
1542 1582 6.994496 TCTGAACAGGATCTATTTGCCTATTG 59.006 38.462 1.93 0.00 0.00 1.90
1554 1594 5.303971 CAAACTCACTTCTGAACAGGATCT 58.696 41.667 1.93 0.00 0.00 2.75
1717 1760 5.529791 TCTCTGAGTGAAAACGGTAGAAAG 58.470 41.667 4.32 0.00 0.00 2.62
1720 1763 4.022242 CCTTCTCTGAGTGAAAACGGTAGA 60.022 45.833 4.32 0.00 0.00 2.59
1781 1824 1.039785 TGATAGTCGCTGCCTGCTCT 61.040 55.000 0.00 0.00 40.11 4.09
1800 1843 4.320456 CACTCCCACCAGCTGCGT 62.320 66.667 8.66 4.99 0.00 5.24
1929 1972 0.178967 TCTGGGTTTTGCAGCATCCA 60.179 50.000 0.00 1.53 0.00 3.41
1952 1995 3.808466 ACAATCTCTTCTCGCTGCATA 57.192 42.857 0.00 0.00 0.00 3.14
2135 2178 5.763698 AGTTATGTCAGCATGGAAGATCATG 59.236 40.000 0.00 0.00 45.26 3.07
2319 2362 1.525923 CACTCCTCCTGCATCCTGG 59.474 63.158 0.00 0.00 0.00 4.45
2325 2368 1.196766 ATGTCAGCACTCCTCCTGCA 61.197 55.000 0.00 0.00 37.08 4.41
2355 2398 2.546795 CCGAGCTTCAGAGTTTGAGTGT 60.547 50.000 0.00 0.00 37.07 3.55
2497 2569 7.174946 TCAGTCCTGAAAATTCATGGTTAAGAC 59.825 37.037 0.00 0.00 36.53 3.01
2533 2605 5.572896 CGATTTTTCTAATTCAACAGGCCAC 59.427 40.000 5.01 0.00 0.00 5.01
2581 2653 3.411446 CTGGTGTTCCTCAACTGCAATA 58.589 45.455 0.00 0.00 34.34 1.90
2677 2749 4.288398 ACCTCTCCCTAAAACCTAGTAGC 58.712 47.826 0.00 0.00 0.00 3.58
2778 2850 8.594881 ACTTATATCGGATTGTTAAAGAGCAG 57.405 34.615 0.00 0.00 0.00 4.24
2812 2884 7.202526 GGACTCAAGTCAATCAGAAGATCTAG 58.797 42.308 11.99 0.00 46.47 2.43
2929 3001 3.290710 CTTATGCAAGTTACATGGCCCT 58.709 45.455 0.00 0.00 0.00 5.19
2944 3016 3.658757 TTGGCAAGGTTGAACTTATGC 57.341 42.857 0.00 10.47 0.00 3.14
3018 3090 9.878599 CGGAATATACTTTGATTAAACCATGTC 57.121 33.333 0.00 0.00 0.00 3.06
3181 3253 2.457366 ACAAGGAGCTGTTTCTACCG 57.543 50.000 0.00 0.00 0.00 4.02
3423 3496 8.613060 TTGGAATGCAAAATTATTTGTAGCAA 57.387 26.923 13.67 0.02 46.19 3.91
3770 3871 5.358298 AAGTAAAGGAGAAAATGCGTGTC 57.642 39.130 0.00 0.00 0.00 3.67
3849 3950 1.446907 GCAGCTAAAGCAGAAGCAGA 58.553 50.000 4.54 0.00 45.49 4.26
3859 3960 8.730680 TCTTTTATAAACTTGAGGCAGCTAAAG 58.269 33.333 0.00 0.00 0.00 1.85
3867 3968 8.268850 TGTCAGATCTTTTATAAACTTGAGGC 57.731 34.615 0.00 0.00 0.00 4.70
3968 4069 4.453136 TCGTATGCAAAGGTAAAGGTGTTC 59.547 41.667 0.00 0.00 0.00 3.18
4068 4169 8.915057 ATATCTATCTTTAACAAGCAGCATGT 57.085 30.769 0.00 0.00 39.31 3.21
4278 5098 4.875544 TTACATTTCGGCTCAATACAGC 57.124 40.909 0.00 0.00 38.84 4.40
4299 5119 8.840321 CCAAATAACCATTCGATTCTAGACATT 58.160 33.333 0.00 0.00 0.00 2.71
4541 5364 2.726633 TGAGCTTAGCAACGTTTTTGC 58.273 42.857 7.07 0.00 45.22 3.68
4659 5482 7.106239 AGGTCCACAATGAACTATAAGAACAG 58.894 38.462 0.00 0.00 28.10 3.16
4800 5623 3.329386 CAATCATGTAGATAGGCCACCG 58.671 50.000 5.01 0.00 35.39 4.94
5096 5939 3.059393 TGATACCGAAGCTATACACGTCG 60.059 47.826 0.00 0.00 38.50 5.12
5246 6152 9.729023 CATCATCGTAAATACAAAAGGCAATTA 57.271 29.630 0.00 0.00 0.00 1.40
5265 6171 2.220479 TCTGAGAAGCTGCATCATCG 57.780 50.000 7.68 0.00 0.00 3.84
5270 6176 1.390565 GGCAATCTGAGAAGCTGCAT 58.609 50.000 14.00 0.00 34.66 3.96
5294 6200 2.228059 CATCTCCATTGATCCTGCCAC 58.772 52.381 0.00 0.00 0.00 5.01
5423 6329 1.747355 CAGAAGAACATCCCACATGCC 59.253 52.381 0.00 0.00 0.00 4.40
5456 6362 2.210116 CACACGTAAGGTTGCACTCTT 58.790 47.619 6.08 6.08 46.39 2.85
5580 6492 5.355596 CCATATAGAGCCCGATGAAATCTC 58.644 45.833 0.00 0.00 42.58 2.75
5599 6511 4.344102 ACTTAATAACCTCTGAGCGCCATA 59.656 41.667 2.29 0.00 0.00 2.74
5676 6635 1.992170 AGAATCGGTTCTGTACGCAC 58.008 50.000 10.88 0.00 42.97 5.34
5685 6644 3.121778 GCACATGCAAAAAGAATCGGTTC 59.878 43.478 0.00 0.00 41.59 3.62
5690 6649 3.052036 ACACGCACATGCAAAAAGAATC 58.948 40.909 4.49 0.00 42.21 2.52
5691 6650 3.052036 GACACGCACATGCAAAAAGAAT 58.948 40.909 4.49 0.00 42.21 2.40
5716 6675 3.251479 TGTGATTGAGCGCTCATAACT 57.749 42.857 38.40 23.40 39.64 2.24
5724 6683 2.285256 CGTCTACAATGTGATTGAGCGC 60.285 50.000 0.00 0.00 42.83 5.92
5745 6704 4.395542 AGAAACTGAGAAGATTCATGCTGC 59.604 41.667 0.00 0.00 0.00 5.25
5758 6717 3.323979 GGGTACTTGGTGAGAAACTGAGA 59.676 47.826 0.00 0.00 0.00 3.27
5799 6758 2.987149 ACTCAGAATAAACAGCACGACG 59.013 45.455 0.00 0.00 0.00 5.12
5800 6759 4.992381 AACTCAGAATAAACAGCACGAC 57.008 40.909 0.00 0.00 0.00 4.34
5801 6760 5.053811 TCAAACTCAGAATAAACAGCACGA 58.946 37.500 0.00 0.00 0.00 4.35
5819 6779 8.660373 CACACATCTATAACCTTCTCTTCAAAC 58.340 37.037 0.00 0.00 0.00 2.93
5847 6812 3.998913 TGGTGTAGATTGCAGGATTCA 57.001 42.857 0.00 0.00 0.00 2.57
5848 6813 4.202441 ACATGGTGTAGATTGCAGGATTC 58.798 43.478 0.00 0.00 0.00 2.52
5849 6814 4.240881 ACATGGTGTAGATTGCAGGATT 57.759 40.909 0.00 0.00 0.00 3.01
5879 6844 5.694816 TGATTTTTGCACGACGATACAATT 58.305 33.333 0.00 0.00 0.00 2.32
5905 6870 0.961358 AAGCTAGGCGAGTCAGACGT 60.961 55.000 0.00 0.00 0.00 4.34
5913 6878 3.393089 ACATTGGATAAGCTAGGCGAG 57.607 47.619 0.00 0.00 0.00 5.03
5914 6879 4.883083 CTTACATTGGATAAGCTAGGCGA 58.117 43.478 0.00 0.00 0.00 5.54
6022 8471 3.004951 CATCAGGAGGGCAAGCCT 58.995 61.111 11.40 0.00 36.10 4.58
6023 8472 2.832201 GCATCAGGAGGGCAAGCC 60.832 66.667 1.52 1.52 0.00 4.35
6024 8473 1.453762 GATGCATCAGGAGGGCAAGC 61.454 60.000 21.92 0.00 41.43 4.01
6025 8474 0.106868 TGATGCATCAGGAGGGCAAG 60.107 55.000 25.42 0.00 41.43 4.01
6026 8475 2.000983 TGATGCATCAGGAGGGCAA 58.999 52.632 25.42 0.00 41.43 4.52
6027 8476 3.744137 TGATGCATCAGGAGGGCA 58.256 55.556 25.42 0.34 42.43 5.36
6061 8511 1.092921 TGCCAACTGTCAACACCGTC 61.093 55.000 0.00 0.00 0.00 4.79
6071 8521 3.362262 CAGCATGCTGCCAACTGT 58.638 55.556 33.18 0.00 46.52 3.55
6087 8537 2.769652 ATTTTGAGGGCAGCGAGGCA 62.770 55.000 7.94 0.00 46.44 4.75
6105 8555 9.528018 AAAATTAAGTGTCATTTCGTCAAACAT 57.472 25.926 0.00 0.00 0.00 2.71
6122 8572 7.327214 TGCTTTCCAGTTGAACAAAATTAAGT 58.673 30.769 0.00 0.00 31.05 2.24
6129 8579 3.096092 ACCTGCTTTCCAGTTGAACAAA 58.904 40.909 0.00 0.00 40.06 2.83
6209 8715 5.689383 TTTCAATTCACTGCAGGTACTTC 57.311 39.130 19.93 0.00 34.60 3.01
6219 8725 7.748691 AAATGGGGAAATTTTCAATTCACTG 57.251 32.000 11.09 0.00 0.00 3.66
6231 8737 5.023514 AGGACAGGTTAAATGGGGAAATT 57.976 39.130 0.00 0.00 0.00 1.82
6232 8738 4.692523 AGGACAGGTTAAATGGGGAAAT 57.307 40.909 0.00 0.00 0.00 2.17
6244 8751 2.519013 GCCATCAGAAAAGGACAGGTT 58.481 47.619 0.00 0.00 0.00 3.50
6432 9286 9.676195 CTCAGGCTAATCTATCATCATATTACG 57.324 37.037 0.00 0.00 0.00 3.18
6467 9321 2.951642 TGCTAAATGGAACTATGCAGGC 59.048 45.455 0.00 0.00 0.00 4.85
6471 9325 6.624352 TTCAGATGCTAAATGGAACTATGC 57.376 37.500 0.00 0.00 0.00 3.14
6531 9385 2.494151 AAAGAGGAGGGAGGGGGTCC 62.494 65.000 0.00 0.00 46.10 4.46
6610 9464 2.685850 AACTGTCCGGGCTGTAATAC 57.314 50.000 19.59 0.00 0.00 1.89
6622 9476 1.602771 GTCAGGCCCCTAACTGTCC 59.397 63.158 0.00 0.00 36.17 4.02
6639 9493 5.070047 CCCTAACACGATAAGATAACTGGGT 59.930 44.000 0.00 0.00 0.00 4.51
6798 9652 1.992277 AGGAAGGAGATGGCGCAGT 60.992 57.895 10.83 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.