Multiple sequence alignment - TraesCS5B01G185100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G185100 chr5B 100.000 3345 0 0 1916 5260 336410194 336406850 0.000000e+00 6178.0
1 TraesCS5B01G185100 chr5B 100.000 1591 0 0 1 1591 336412109 336410519 0.000000e+00 2939.0
2 TraesCS5B01G185100 chr5B 100.000 521 0 0 5500 6020 336406610 336406090 0.000000e+00 963.0
3 TraesCS5B01G185100 chr5B 88.136 59 6 1 3656 3713 294766923 294766981 1.080000e-07 69.4
4 TraesCS5B01G185100 chr5A 93.936 3018 112 35 2061 5038 388166338 388169324 0.000000e+00 4494.0
5 TraesCS5B01G185100 chr5A 92.807 709 47 4 881 1588 388165626 388166331 0.000000e+00 1024.0
6 TraesCS5B01G185100 chr5A 97.826 46 1 0 3662 3707 174594118 174594073 5.000000e-11 80.5
7 TraesCS5B01G185100 chr5A 97.778 45 1 0 3663 3707 9653286 9653242 1.800000e-10 78.7
8 TraesCS5B01G185100 chr5A 97.778 45 1 0 3663 3707 544514191 544514147 1.800000e-10 78.7
9 TraesCS5B01G185100 chr5D 88.296 3093 221 65 2021 5040 294669455 294672479 0.000000e+00 3576.0
10 TraesCS5B01G185100 chr5D 92.531 723 40 5 881 1591 294668454 294669174 0.000000e+00 1024.0
11 TraesCS5B01G185100 chr5D 86.512 430 52 6 1 427 294667049 294667475 9.140000e-128 468.0
12 TraesCS5B01G185100 chr5D 81.724 290 45 8 4 287 438969623 438969910 1.010000e-57 235.0
13 TraesCS5B01G185100 chr5D 80.272 294 49 8 1 287 389057255 389057546 4.730000e-51 213.0
14 TraesCS5B01G185100 chr5D 94.231 52 2 1 3655 3706 298134529 298134579 1.800000e-10 78.7
15 TraesCS5B01G185100 chr5D 97.778 45 1 0 3663 3707 428676972 428676928 1.800000e-10 78.7
16 TraesCS5B01G185100 chr5D 93.617 47 3 0 3659 3705 261391154 261391108 3.010000e-08 71.3
17 TraesCS5B01G185100 chr5D 100.000 38 0 0 3670 3707 481269136 481269099 3.010000e-08 71.3
18 TraesCS5B01G185100 chr5D 100.000 35 0 0 3670 3704 260796375 260796409 1.400000e-06 65.8
19 TraesCS5B01G185100 chr3B 97.505 521 13 0 5500 6020 596967788 596968308 0.000000e+00 891.0
20 TraesCS5B01G185100 chr3B 97.126 522 14 1 5500 6020 593858785 593859306 0.000000e+00 880.0
21 TraesCS5B01G185100 chr3B 97.070 512 15 0 5509 6020 770223988 770223477 0.000000e+00 863.0
22 TraesCS5B01G185100 chr3B 96.413 223 5 2 5040 5259 596967221 596967443 1.230000e-96 364.0
23 TraesCS5B01G185100 chr3B 95.946 222 4 3 5041 5259 51805813 51806032 7.420000e-94 355.0
24 TraesCS5B01G185100 chr3B 95.413 218 9 1 5032 5248 565565973 565566190 4.470000e-91 346.0
25 TraesCS5B01G185100 chr3B 94.222 225 7 5 5041 5259 778499303 778499079 7.470000e-89 339.0
26 TraesCS5B01G185100 chr3B 83.333 66 10 1 344 408 571768011 571768076 6.520000e-05 60.2
27 TraesCS5B01G185100 chrUn 97.121 521 15 0 5500 6020 300571450 300570930 0.000000e+00 880.0
28 TraesCS5B01G185100 chrUn 96.429 224 1 3 5041 5260 471203679 471203459 4.430000e-96 363.0
29 TraesCS5B01G185100 chrUn 94.222 225 7 5 5041 5259 331576998 331577222 7.470000e-89 339.0
30 TraesCS5B01G185100 chr2A 96.929 521 16 0 5500 6020 508024363 508024883 0.000000e+00 874.0
31 TraesCS5B01G185100 chr2A 78.840 293 52 8 4 287 622265517 622265226 7.970000e-44 189.0
32 TraesCS5B01G185100 chr2A 92.453 53 4 0 3652 3704 657103384 657103436 6.470000e-10 76.8
33 TraesCS5B01G185100 chr7A 96.737 521 17 0 5500 6020 106430402 106430922 0.000000e+00 869.0
34 TraesCS5B01G185100 chr3A 96.737 521 17 0 5500 6020 739970033 739969513 0.000000e+00 869.0
35 TraesCS5B01G185100 chr3A 96.698 212 4 2 5041 5249 739970541 739970330 3.450000e-92 350.0
36 TraesCS5B01G185100 chr3A 78.716 296 53 8 1 287 264950130 264950424 7.970000e-44 189.0
37 TraesCS5B01G185100 chr1A 97.065 511 15 0 5510 6020 85044089 85044599 0.000000e+00 861.0
38 TraesCS5B01G185100 chr1B 96.161 521 20 0 5500 6020 173611090 173611610 0.000000e+00 852.0
39 TraesCS5B01G185100 chr1B 97.183 213 3 2 5041 5250 173610361 173610573 2.060000e-94 357.0
40 TraesCS5B01G185100 chr1B 78.030 264 46 11 7 262 629093902 629093643 8.080000e-34 156.0
41 TraesCS5B01G185100 chr1B 82.171 129 9 8 761 877 19437087 19437213 1.380000e-16 99.0
42 TraesCS5B01G185100 chr1B 96.296 54 2 0 824 877 19338478 19338531 8.310000e-14 89.8
43 TraesCS5B01G185100 chr1B 84.722 72 9 2 332 402 642960765 642960835 3.010000e-08 71.3
44 TraesCS5B01G185100 chr1B 94.595 37 2 0 841 877 19472166 19472202 2.340000e-04 58.4
45 TraesCS5B01G185100 chr6A 96.296 216 5 2 5036 5248 176002805 176002590 9.600000e-93 351.0
46 TraesCS5B01G185100 chr6A 80.000 275 51 4 17 287 123519840 123519566 3.680000e-47 200.0
47 TraesCS5B01G185100 chr6A 83.916 143 17 6 147 287 157964153 157964291 1.360000e-26 132.0
48 TraesCS5B01G185100 chr6A 90.000 50 5 0 3655 3704 33182572 33182523 1.400000e-06 65.8
49 TraesCS5B01G185100 chr3D 79.522 293 52 7 1 287 26308145 26308435 1.020000e-47 202.0
50 TraesCS5B01G185100 chr3D 93.750 48 3 0 3658 3705 389909196 389909243 8.370000e-09 73.1
51 TraesCS5B01G185100 chr3D 94.444 36 2 0 3651 3686 427802437 427802472 8.430000e-04 56.5
52 TraesCS5B01G185100 chr1D 79.649 285 52 6 4 283 431455254 431454971 3.680000e-47 200.0
53 TraesCS5B01G185100 chr1D 79.545 132 15 9 760 881 13796581 13796710 3.870000e-12 84.2
54 TraesCS5B01G185100 chr1D 95.238 42 2 0 3659 3700 198281542 198281583 3.890000e-07 67.6
55 TraesCS5B01G185100 chr4D 79.655 290 46 9 4 288 455291931 455291650 4.760000e-46 196.0
56 TraesCS5B01G185100 chr4D 77.193 228 40 9 401 623 362788259 362788039 8.190000e-24 122.0
57 TraesCS5B01G185100 chr4D 92.453 53 4 0 3652 3704 341396737 341396685 6.470000e-10 76.8
58 TraesCS5B01G185100 chr4B 77.700 287 50 12 4 285 568403918 568403641 4.830000e-36 163.0
59 TraesCS5B01G185100 chr4B 77.206 272 45 13 19 285 568371867 568371608 6.290000e-30 143.0
60 TraesCS5B01G185100 chr4A 93.103 58 4 0 823 880 521543373 521543316 1.080000e-12 86.1
61 TraesCS5B01G185100 chr2D 90.164 61 6 0 3647 3707 382456068 382456128 5.000000e-11 80.5
62 TraesCS5B01G185100 chr2D 93.182 44 3 0 835 878 266815055 266815098 1.400000e-06 65.8
63 TraesCS5B01G185100 chr7D 95.652 46 2 0 144 189 595761637 595761682 2.330000e-09 75.0
64 TraesCS5B01G185100 chr7D 93.617 47 3 0 3659 3705 230822464 230822418 3.010000e-08 71.3
65 TraesCS5B01G185100 chr7D 83.333 78 9 4 332 408 10880792 10880866 1.080000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G185100 chr5B 336406090 336412109 6019 True 3360.000000 6178 100.0000 1 6020 3 chr5B.!!$R1 6019
1 TraesCS5B01G185100 chr5A 388165626 388169324 3698 False 2759.000000 4494 93.3715 881 5038 2 chr5A.!!$F1 4157
2 TraesCS5B01G185100 chr5D 294667049 294672479 5430 False 1689.333333 3576 89.1130 1 5040 3 chr5D.!!$F5 5039
3 TraesCS5B01G185100 chr3B 593858785 593859306 521 False 880.000000 880 97.1260 5500 6020 1 chr3B.!!$F4 520
4 TraesCS5B01G185100 chr3B 770223477 770223988 511 True 863.000000 863 97.0700 5509 6020 1 chr3B.!!$R1 511
5 TraesCS5B01G185100 chr3B 596967221 596968308 1087 False 627.500000 891 96.9590 5040 6020 2 chr3B.!!$F5 980
6 TraesCS5B01G185100 chrUn 300570930 300571450 520 True 880.000000 880 97.1210 5500 6020 1 chrUn.!!$R1 520
7 TraesCS5B01G185100 chr2A 508024363 508024883 520 False 874.000000 874 96.9290 5500 6020 1 chr2A.!!$F1 520
8 TraesCS5B01G185100 chr7A 106430402 106430922 520 False 869.000000 869 96.7370 5500 6020 1 chr7A.!!$F1 520
9 TraesCS5B01G185100 chr3A 739969513 739970541 1028 True 609.500000 869 96.7175 5041 6020 2 chr3A.!!$R1 979
10 TraesCS5B01G185100 chr1A 85044089 85044599 510 False 861.000000 861 97.0650 5510 6020 1 chr1A.!!$F1 510
11 TraesCS5B01G185100 chr1B 173610361 173611610 1249 False 604.500000 852 96.6720 5041 6020 2 chr1B.!!$F5 979

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
166 170 0.033228 CCGAGCATCCCATGTCTCTC 59.967 60.0 0.00 0.00 33.90 3.20 F
610 1007 0.037975 CCAACCGCCTTACGTGTAGT 60.038 55.0 0.00 0.00 41.42 2.73 F
1017 1736 0.107643 GGATGAGGAGCTGGGCTAAC 59.892 60.0 0.00 0.00 39.88 2.34 F
2019 2750 0.103937 CTTCCTCGATCTGGCCAGAC 59.896 60.0 37.39 26.91 40.75 3.51 F
2250 2981 0.191064 ACCTGACTTCCCTGGTCTGA 59.809 55.0 0.00 0.00 33.83 3.27 F
2381 3118 0.888736 CCGGGCATGTCACACAAGAA 60.889 55.0 0.00 0.00 0.00 2.52 F
3697 4500 1.668419 AAGTGTCGCAGCTTTGAACT 58.332 45.0 0.00 0.00 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1512 2243 0.040514 TCAATTGCAAGCGTTCCACG 60.041 50.000 4.94 0.00 45.88 4.94 R
2000 2731 0.103937 GTCTGGCCAGATCGAGGAAG 59.896 60.000 37.07 6.86 39.97 3.46 R
2809 3561 0.251474 AAGGATGCAGCAAAGGAGCA 60.251 50.000 3.51 0.00 43.14 4.26 R
3884 4687 1.142870 ACAAGCCTACAAGAGTGGCAA 59.857 47.619 6.01 0.00 41.46 4.52 R
3888 4709 2.221169 TGCAACAAGCCTACAAGAGTG 58.779 47.619 0.00 0.00 44.83 3.51 R
4348 5174 1.378762 GCTCACCCTGCCACCTTTA 59.621 57.895 0.00 0.00 0.00 1.85 R
5570 6695 0.260523 ACTGTAGAGGAGGAGGAGCC 59.739 60.000 0.00 0.00 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 0.303493 GTTGTCTTGTTTGCTCGCGA 59.697 50.000 9.26 9.26 0.00 5.87
53 54 0.303493 TTGTCTTGTTTGCTCGCGAC 59.697 50.000 3.71 2.83 0.00 5.19
54 55 0.808060 TGTCTTGTTTGCTCGCGACA 60.808 50.000 3.71 5.94 0.00 4.35
72 73 3.315470 CGACATCTTCGGTTCTGGATCTA 59.685 47.826 0.00 0.00 44.60 1.98
75 76 4.582656 ACATCTTCGGTTCTGGATCTAGAG 59.417 45.833 8.93 0.00 0.00 2.43
79 80 2.952978 TCGGTTCTGGATCTAGAGAAGC 59.047 50.000 8.93 13.24 41.32 3.86
81 82 3.243367 CGGTTCTGGATCTAGAGAAGCTG 60.243 52.174 19.91 13.79 42.14 4.24
99 100 2.362077 GCTGGTCATCTTGTTGTTGGTT 59.638 45.455 0.00 0.00 0.00 3.67
123 124 1.137086 GCTACTTCTCAGGATGGCGAA 59.863 52.381 0.00 0.00 36.16 4.70
164 168 1.596477 GCCGAGCATCCCATGTCTC 60.596 63.158 0.00 0.00 33.23 3.36
166 170 0.033228 CCGAGCATCCCATGTCTCTC 59.967 60.000 0.00 0.00 33.90 3.20
170 174 0.469070 GCATCCCATGTCTCTCTGCT 59.531 55.000 0.00 0.00 0.00 4.24
174 178 1.440893 CCATGTCTCTCTGCTCCGG 59.559 63.158 0.00 0.00 0.00 5.14
216 220 2.813754 GTGTCTGTGCCATGTGTTGTAT 59.186 45.455 0.00 0.00 0.00 2.29
222 226 2.819608 GTGCCATGTGTTGTATCACCTT 59.180 45.455 0.00 0.00 37.51 3.50
225 229 5.048364 GTGCCATGTGTTGTATCACCTTTTA 60.048 40.000 0.00 0.00 37.51 1.52
231 235 9.383519 CATGTGTTGTATCACCTTTTATACTCT 57.616 33.333 0.00 0.00 37.51 3.24
233 237 8.590204 TGTGTTGTATCACCTTTTATACTCTCA 58.410 33.333 0.00 0.00 37.51 3.27
288 292 4.736307 AGTTTTGCGTATTCGTGAAAAACC 59.264 37.500 18.86 9.22 41.62 3.27
291 295 4.288670 TGCGTATTCGTGAAAAACCAAA 57.711 36.364 0.00 0.00 39.49 3.28
292 296 4.283678 TGCGTATTCGTGAAAAACCAAAG 58.716 39.130 0.00 0.00 39.49 2.77
293 297 3.666797 GCGTATTCGTGAAAAACCAAAGG 59.333 43.478 0.00 0.00 39.49 3.11
294 298 3.666797 CGTATTCGTGAAAAACCAAAGGC 59.333 43.478 0.00 0.00 0.00 4.35
296 300 0.382515 TCGTGAAAAACCAAAGGCGG 59.617 50.000 0.00 0.00 0.00 6.13
297 301 1.212455 CGTGAAAAACCAAAGGCGGC 61.212 55.000 0.00 0.00 0.00 6.53
299 303 1.663388 GAAAAACCAAAGGCGGCGG 60.663 57.895 9.78 0.77 0.00 6.13
301 305 1.677637 AAAAACCAAAGGCGGCGGAA 61.678 50.000 9.78 0.00 0.00 4.30
302 306 2.082629 AAAACCAAAGGCGGCGGAAG 62.083 55.000 9.78 0.00 0.00 3.46
318 322 2.880268 CGGAAGCTTGATCCATATTGCA 59.120 45.455 2.10 0.00 36.74 4.08
331 335 5.659463 TCCATATTGCACAACCATAAAAGC 58.341 37.500 0.00 0.00 0.00 3.51
374 378 9.764363 ATGTGTGTAAGGTATATGTCATGTAAG 57.236 33.333 0.00 0.00 0.00 2.34
388 392 7.144722 TGTCATGTAAGATTGATGTTGAACC 57.855 36.000 0.00 0.00 0.00 3.62
406 410 7.608761 TGTTGAACCACTAAAATATGTAGGACC 59.391 37.037 0.00 0.00 0.00 4.46
407 411 6.655930 TGAACCACTAAAATATGTAGGACCC 58.344 40.000 0.00 0.00 0.00 4.46
410 414 5.063880 CCACTAAAATATGTAGGACCCTGC 58.936 45.833 0.00 0.00 0.00 4.85
420 424 0.916358 AGGACCCTGCTAAGTGCCAT 60.916 55.000 0.00 0.00 42.00 4.40
427 431 3.123804 CCTGCTAAGTGCCATACGTTAG 58.876 50.000 0.00 0.00 42.00 2.34
429 433 2.498481 TGCTAAGTGCCATACGTTAGGT 59.502 45.455 0.00 0.00 42.00 3.08
431 435 4.047142 GCTAAGTGCCATACGTTAGGTAC 58.953 47.826 15.92 15.92 40.33 3.34
432 436 5.311858 GCTAAGTGCCATACGTTAGGTACG 61.312 50.000 17.07 8.18 44.06 3.67
433 437 7.437468 GCTAAGTGCCATACGTTAGGTACGA 62.437 48.000 17.07 10.93 44.06 3.43
444 839 2.004583 TAGGTACGAGCACATGCAAC 57.995 50.000 6.64 0.00 45.16 4.17
446 841 0.721718 GGTACGAGCACATGCAACTC 59.278 55.000 6.64 0.00 45.16 3.01
461 856 3.049912 GCAACTCCAAATGTTTTCGACC 58.950 45.455 0.00 0.00 0.00 4.79
469 865 3.430333 AATGTTTTCGACCGCAAGTTT 57.570 38.095 0.00 0.00 0.00 2.66
476 872 0.433492 CGACCGCAAGTTTAGTGACG 59.567 55.000 0.00 0.00 0.00 4.35
477 873 1.494824 GACCGCAAGTTTAGTGACGT 58.505 50.000 0.00 0.00 0.00 4.34
480 876 1.862201 CCGCAAGTTTAGTGACGTGAA 59.138 47.619 0.00 0.00 31.83 3.18
481 877 2.096909 CCGCAAGTTTAGTGACGTGAAG 60.097 50.000 0.00 0.00 31.83 3.02
485 881 5.220043 CGCAAGTTTAGTGACGTGAAGATAG 60.220 44.000 0.00 0.00 31.83 2.08
490 886 2.596452 AGTGACGTGAAGATAGCAACG 58.404 47.619 0.00 0.00 0.00 4.10
502 898 4.181578 AGATAGCAACGTTCGTGCTTTAT 58.818 39.130 17.64 7.06 39.79 1.40
503 899 4.630069 AGATAGCAACGTTCGTGCTTTATT 59.370 37.500 17.64 2.46 39.79 1.40
530 926 1.003866 GACAGAAACTTGCCGTGTGTC 60.004 52.381 0.00 0.00 0.00 3.67
533 929 1.014352 GAAACTTGCCGTGTGTCACT 58.986 50.000 4.27 0.00 31.34 3.41
534 930 2.159014 AGAAACTTGCCGTGTGTCACTA 60.159 45.455 4.27 0.00 31.34 2.74
535 931 1.865865 AACTTGCCGTGTGTCACTAG 58.134 50.000 4.27 0.00 31.34 2.57
536 932 1.037493 ACTTGCCGTGTGTCACTAGA 58.963 50.000 4.27 0.00 31.34 2.43
537 933 1.411246 ACTTGCCGTGTGTCACTAGAA 59.589 47.619 4.27 0.00 31.34 2.10
538 934 2.159014 ACTTGCCGTGTGTCACTAGAAA 60.159 45.455 4.27 0.00 31.34 2.52
539 935 2.831685 TGCCGTGTGTCACTAGAAAT 57.168 45.000 4.27 0.00 31.34 2.17
542 938 2.806244 GCCGTGTGTCACTAGAAATTGT 59.194 45.455 4.27 0.00 31.34 2.71
548 944 6.456315 CGTGTGTCACTAGAAATTGTCAACAA 60.456 38.462 4.27 0.00 34.66 2.83
551 947 6.360681 GTGTCACTAGAAATTGTCAACAATGC 59.639 38.462 9.03 5.29 45.06 3.56
552 948 6.039159 TGTCACTAGAAATTGTCAACAATGCA 59.961 34.615 9.03 0.00 45.06 3.96
555 951 6.864685 CACTAGAAATTGTCAACAATGCATGT 59.135 34.615 9.03 0.00 45.06 3.21
558 954 5.924254 AGAAATTGTCAACAATGCATGTCTG 59.076 36.000 9.03 0.00 45.06 3.51
565 961 4.523558 TCAACAATGCATGTCTGGAATTGA 59.476 37.500 0.00 0.00 42.99 2.57
595 992 2.185310 ATCAGGACCGGAGTGCCAAC 62.185 60.000 9.46 0.00 34.22 3.77
603 1000 2.038837 GGAGTGCCAACCGCCTTAC 61.039 63.158 0.00 0.00 36.24 2.34
605 1002 2.667199 GTGCCAACCGCCTTACGT 60.667 61.111 0.00 0.00 41.42 3.57
606 1003 2.666862 TGCCAACCGCCTTACGTG 60.667 61.111 0.00 0.00 41.42 4.49
607 1004 2.667199 GCCAACCGCCTTACGTGT 60.667 61.111 0.00 0.00 41.42 4.49
608 1005 1.374505 GCCAACCGCCTTACGTGTA 60.375 57.895 0.00 0.00 41.42 2.90
609 1006 1.356527 GCCAACCGCCTTACGTGTAG 61.357 60.000 0.00 0.00 41.42 2.74
610 1007 0.037975 CCAACCGCCTTACGTGTAGT 60.038 55.000 0.00 0.00 41.42 2.73
611 1008 1.343506 CAACCGCCTTACGTGTAGTC 58.656 55.000 0.00 0.00 41.42 2.59
615 1012 1.068055 CCGCCTTACGTGTAGTCACTT 60.068 52.381 0.00 0.00 41.89 3.16
616 1013 1.983605 CGCCTTACGTGTAGTCACTTG 59.016 52.381 0.00 0.00 41.89 3.16
617 1014 2.606308 CGCCTTACGTGTAGTCACTTGT 60.606 50.000 0.00 0.00 41.89 3.16
619 1016 3.551454 GCCTTACGTGTAGTCACTTGTCA 60.551 47.826 0.00 0.00 41.89 3.58
620 1017 4.806330 CCTTACGTGTAGTCACTTGTCAT 58.194 43.478 0.00 0.00 41.89 3.06
621 1018 5.227908 CCTTACGTGTAGTCACTTGTCATT 58.772 41.667 0.00 0.00 41.89 2.57
623 1020 6.202188 CCTTACGTGTAGTCACTTGTCATTTT 59.798 38.462 0.00 0.00 41.89 1.82
624 1021 7.383029 CCTTACGTGTAGTCACTTGTCATTTTA 59.617 37.037 0.00 0.00 41.89 1.52
626 1023 7.117241 ACGTGTAGTCACTTGTCATTTTATG 57.883 36.000 0.00 0.00 41.89 1.90
627 1024 6.704493 ACGTGTAGTCACTTGTCATTTTATGT 59.296 34.615 0.00 0.00 41.89 2.29
628 1025 7.868922 ACGTGTAGTCACTTGTCATTTTATGTA 59.131 33.333 0.00 0.00 41.89 2.29
629 1026 8.869897 CGTGTAGTCACTTGTCATTTTATGTAT 58.130 33.333 0.00 0.00 41.89 2.29
660 1378 6.295249 TGCAATTTGTATGGATTCGAGGATA 58.705 36.000 0.00 0.00 0.00 2.59
682 1401 1.743394 GAAGTGGGGTCAAATTAGGCG 59.257 52.381 0.00 0.00 0.00 5.52
700 1419 1.850377 CGATCTCGCTTGAAGATGCT 58.150 50.000 0.00 0.00 0.00 3.79
701 1420 2.200067 CGATCTCGCTTGAAGATGCTT 58.800 47.619 0.00 0.00 0.00 3.91
702 1421 2.606725 CGATCTCGCTTGAAGATGCTTT 59.393 45.455 0.00 0.00 0.00 3.51
703 1422 3.543656 CGATCTCGCTTGAAGATGCTTTG 60.544 47.826 0.00 0.00 0.00 2.77
704 1423 3.044235 TCTCGCTTGAAGATGCTTTGA 57.956 42.857 0.00 0.00 0.00 2.69
705 1424 3.603532 TCTCGCTTGAAGATGCTTTGAT 58.396 40.909 0.00 0.00 0.00 2.57
706 1425 3.620374 TCTCGCTTGAAGATGCTTTGATC 59.380 43.478 0.00 0.00 0.00 2.92
707 1426 2.349580 TCGCTTGAAGATGCTTTGATCG 59.650 45.455 0.00 0.00 0.00 3.69
708 1427 2.538333 CGCTTGAAGATGCTTTGATCGG 60.538 50.000 0.00 0.00 0.00 4.18
709 1428 2.223433 GCTTGAAGATGCTTTGATCGGG 60.223 50.000 0.00 0.00 0.00 5.14
710 1429 2.042686 TGAAGATGCTTTGATCGGGG 57.957 50.000 0.00 0.00 0.00 5.73
711 1430 1.559219 TGAAGATGCTTTGATCGGGGA 59.441 47.619 0.00 0.00 0.00 4.81
712 1431 2.173356 TGAAGATGCTTTGATCGGGGAT 59.827 45.455 0.00 0.00 0.00 3.85
713 1432 3.390967 TGAAGATGCTTTGATCGGGGATA 59.609 43.478 0.00 0.00 0.00 2.59
714 1433 4.042062 TGAAGATGCTTTGATCGGGGATAT 59.958 41.667 0.00 0.00 0.00 1.63
715 1434 4.647564 AGATGCTTTGATCGGGGATATT 57.352 40.909 0.00 0.00 0.00 1.28
716 1435 4.990526 AGATGCTTTGATCGGGGATATTT 58.009 39.130 0.00 0.00 0.00 1.40
717 1436 5.388654 AGATGCTTTGATCGGGGATATTTT 58.611 37.500 0.00 0.00 0.00 1.82
718 1437 5.835280 AGATGCTTTGATCGGGGATATTTTT 59.165 36.000 0.00 0.00 0.00 1.94
741 1460 6.922247 TTTTAACACAGTATTGACAACGGA 57.078 33.333 0.00 0.00 0.00 4.69
742 1461 5.910637 TTAACACAGTATTGACAACGGAC 57.089 39.130 0.00 0.00 0.00 4.79
743 1462 2.762745 ACACAGTATTGACAACGGACC 58.237 47.619 0.00 0.00 0.00 4.46
744 1463 2.073816 CACAGTATTGACAACGGACCC 58.926 52.381 0.00 0.00 0.00 4.46
745 1464 1.337447 ACAGTATTGACAACGGACCCG 60.337 52.381 6.94 6.94 46.03 5.28
746 1465 0.248289 AGTATTGACAACGGACCCGG 59.752 55.000 13.43 0.00 44.69 5.73
747 1466 0.741927 GTATTGACAACGGACCCGGG 60.742 60.000 22.25 22.25 44.69 5.73
748 1467 0.903924 TATTGACAACGGACCCGGGA 60.904 55.000 32.02 0.00 44.69 5.14
749 1468 1.559065 ATTGACAACGGACCCGGGAT 61.559 55.000 32.02 12.15 44.69 3.85
750 1469 2.175035 TTGACAACGGACCCGGGATC 62.175 60.000 32.02 20.61 44.69 3.36
751 1470 2.284405 ACAACGGACCCGGGATCT 60.284 61.111 32.02 3.91 44.69 2.75
752 1471 2.186903 CAACGGACCCGGGATCTG 59.813 66.667 32.02 26.17 44.69 2.90
753 1472 3.081409 AACGGACCCGGGATCTGG 61.081 66.667 32.02 17.80 44.69 3.86
754 1473 3.612115 AACGGACCCGGGATCTGGA 62.612 63.158 32.02 0.00 44.69 3.86
755 1474 2.524394 CGGACCCGGGATCTGGAT 60.524 66.667 32.02 0.82 35.56 3.41
756 1475 2.574955 CGGACCCGGGATCTGGATC 61.575 68.421 32.02 12.58 37.11 3.36
757 1476 1.459539 GGACCCGGGATCTGGATCA 60.460 63.158 32.02 0.00 39.54 2.92
758 1477 0.838122 GGACCCGGGATCTGGATCAT 60.838 60.000 32.02 0.00 39.54 2.45
759 1478 1.552486 GGACCCGGGATCTGGATCATA 60.552 57.143 32.02 0.00 39.54 2.15
760 1479 1.827969 GACCCGGGATCTGGATCATAG 59.172 57.143 32.02 0.00 39.54 2.23
761 1480 1.198713 CCCGGGATCTGGATCATAGG 58.801 60.000 18.48 10.58 39.54 2.57
762 1481 1.198713 CCGGGATCTGGATCATAGGG 58.801 60.000 11.93 4.23 39.54 3.53
763 1482 1.553417 CCGGGATCTGGATCATAGGGT 60.553 57.143 11.93 0.00 39.54 4.34
764 1483 2.260822 CGGGATCTGGATCATAGGGTT 58.739 52.381 11.93 0.00 39.54 4.11
765 1484 2.639839 CGGGATCTGGATCATAGGGTTT 59.360 50.000 11.93 0.00 39.54 3.27
766 1485 3.557898 CGGGATCTGGATCATAGGGTTTG 60.558 52.174 11.93 0.00 39.54 2.93
767 1486 3.652869 GGGATCTGGATCATAGGGTTTGA 59.347 47.826 11.93 0.00 39.54 2.69
768 1487 4.290722 GGGATCTGGATCATAGGGTTTGAT 59.709 45.833 11.93 0.00 39.54 2.57
769 1488 5.251764 GGATCTGGATCATAGGGTTTGATG 58.748 45.833 11.93 0.00 39.54 3.07
770 1489 5.013495 GGATCTGGATCATAGGGTTTGATGA 59.987 44.000 11.93 0.00 39.54 2.92
771 1490 6.296894 GGATCTGGATCATAGGGTTTGATGAT 60.297 42.308 11.93 0.00 43.82 2.45
772 1491 6.520021 TCTGGATCATAGGGTTTGATGATT 57.480 37.500 0.00 0.00 41.74 2.57
773 1492 6.914665 TCTGGATCATAGGGTTTGATGATTT 58.085 36.000 0.00 0.00 41.74 2.17
774 1493 6.774170 TCTGGATCATAGGGTTTGATGATTTG 59.226 38.462 0.00 0.00 41.74 2.32
775 1494 5.302568 TGGATCATAGGGTTTGATGATTTGC 59.697 40.000 0.00 0.00 41.74 3.68
776 1495 5.279156 GGATCATAGGGTTTGATGATTTGCC 60.279 44.000 0.00 0.00 41.74 4.52
777 1496 3.960102 TCATAGGGTTTGATGATTTGCCC 59.040 43.478 0.00 0.00 36.46 5.36
778 1497 1.185315 AGGGTTTGATGATTTGCCCG 58.815 50.000 0.00 0.00 40.86 6.13
779 1498 0.175531 GGGTTTGATGATTTGCCCGG 59.824 55.000 0.00 0.00 0.00 5.73
780 1499 0.894835 GGTTTGATGATTTGCCCGGT 59.105 50.000 0.00 0.00 0.00 5.28
781 1500 1.275010 GGTTTGATGATTTGCCCGGTT 59.725 47.619 0.00 0.00 0.00 4.44
782 1501 2.336667 GTTTGATGATTTGCCCGGTTG 58.663 47.619 0.00 0.00 0.00 3.77
783 1502 1.626686 TTGATGATTTGCCCGGTTGT 58.373 45.000 0.00 0.00 0.00 3.32
784 1503 1.173043 TGATGATTTGCCCGGTTGTC 58.827 50.000 0.00 0.00 0.00 3.18
785 1504 1.271871 TGATGATTTGCCCGGTTGTCT 60.272 47.619 0.00 0.00 0.00 3.41
786 1505 1.401905 GATGATTTGCCCGGTTGTCTC 59.598 52.381 0.00 0.00 0.00 3.36
787 1506 0.109532 TGATTTGCCCGGTTGTCTCA 59.890 50.000 0.00 0.00 0.00 3.27
788 1507 0.804989 GATTTGCCCGGTTGTCTCAG 59.195 55.000 0.00 0.00 0.00 3.35
789 1508 0.110486 ATTTGCCCGGTTGTCTCAGT 59.890 50.000 0.00 0.00 0.00 3.41
790 1509 0.817634 TTTGCCCGGTTGTCTCAGTG 60.818 55.000 0.00 0.00 0.00 3.66
791 1510 2.358737 GCCCGGTTGTCTCAGTGG 60.359 66.667 0.00 0.00 0.00 4.00
792 1511 2.358737 CCCGGTTGTCTCAGTGGC 60.359 66.667 0.00 0.00 0.00 5.01
793 1512 2.743718 CCGGTTGTCTCAGTGGCT 59.256 61.111 0.00 0.00 0.00 4.75
794 1513 1.541310 CCCGGTTGTCTCAGTGGCTA 61.541 60.000 0.00 0.00 0.00 3.93
795 1514 0.108615 CCGGTTGTCTCAGTGGCTAG 60.109 60.000 0.00 0.00 0.00 3.42
796 1515 0.603569 CGGTTGTCTCAGTGGCTAGT 59.396 55.000 0.00 0.00 0.00 2.57
797 1516 1.670087 CGGTTGTCTCAGTGGCTAGTG 60.670 57.143 0.00 0.00 0.00 2.74
798 1517 1.618837 GGTTGTCTCAGTGGCTAGTGA 59.381 52.381 7.44 7.44 35.08 3.41
799 1518 2.037251 GGTTGTCTCAGTGGCTAGTGAA 59.963 50.000 9.08 0.00 35.90 3.18
800 1519 3.060602 GTTGTCTCAGTGGCTAGTGAAC 58.939 50.000 9.08 10.20 35.90 3.18
801 1520 1.269723 TGTCTCAGTGGCTAGTGAACG 59.730 52.381 9.08 0.00 35.90 3.95
802 1521 1.269998 GTCTCAGTGGCTAGTGAACGT 59.730 52.381 9.08 0.00 35.90 3.99
803 1522 1.269723 TCTCAGTGGCTAGTGAACGTG 59.730 52.381 9.08 0.00 35.90 4.49
804 1523 0.317160 TCAGTGGCTAGTGAACGTGG 59.683 55.000 4.93 0.00 33.41 4.94
805 1524 1.004918 AGTGGCTAGTGAACGTGGC 60.005 57.895 0.00 0.00 0.00 5.01
806 1525 2.033194 GTGGCTAGTGAACGTGGCC 61.033 63.158 0.00 0.00 42.73 5.36
807 1526 2.436115 GGCTAGTGAACGTGGCCC 60.436 66.667 0.00 0.00 37.12 5.80
808 1527 2.436115 GCTAGTGAACGTGGCCCC 60.436 66.667 0.00 0.00 0.00 5.80
809 1528 3.065306 CTAGTGAACGTGGCCCCA 58.935 61.111 0.00 0.00 0.00 4.96
810 1529 1.375523 CTAGTGAACGTGGCCCCAC 60.376 63.158 0.00 7.39 43.01 4.61
811 1530 2.798148 CTAGTGAACGTGGCCCCACC 62.798 65.000 11.62 0.00 43.49 4.61
812 1531 4.265056 GTGAACGTGGCCCCACCT 62.265 66.667 11.62 0.00 43.49 4.00
813 1532 4.263572 TGAACGTGGCCCCACCTG 62.264 66.667 11.62 1.74 43.49 4.00
814 1533 4.265056 GAACGTGGCCCCACCTGT 62.265 66.667 11.62 2.36 43.49 4.00
815 1534 4.265056 AACGTGGCCCCACCTGTC 62.265 66.667 11.62 0.00 43.49 3.51
817 1536 4.263572 CGTGGCCCCACCTGTCAA 62.264 66.667 11.62 0.00 43.49 3.18
818 1537 2.440599 GTGGCCCCACCTGTCAAT 59.559 61.111 0.00 0.00 40.79 2.57
819 1538 1.678970 GTGGCCCCACCTGTCAATC 60.679 63.158 0.00 0.00 40.79 2.67
820 1539 2.043953 GGCCCCACCTGTCAATCC 60.044 66.667 0.00 0.00 34.51 3.01
821 1540 2.043953 GCCCCACCTGTCAATCCC 60.044 66.667 0.00 0.00 0.00 3.85
822 1541 2.917897 GCCCCACCTGTCAATCCCA 61.918 63.158 0.00 0.00 0.00 4.37
823 1542 1.304282 CCCCACCTGTCAATCCCAG 59.696 63.158 0.00 0.00 0.00 4.45
827 1546 3.841078 CCTGTCAATCCCAGGGGT 58.159 61.111 5.33 0.00 44.77 4.95
828 1547 1.304282 CCTGTCAATCCCAGGGGTG 59.696 63.158 5.33 4.58 44.77 4.61
829 1548 1.304282 CTGTCAATCCCAGGGGTGG 59.696 63.158 5.33 0.00 36.47 4.61
836 1555 4.010018 CCCAGGGGTGGGGCAAAT 62.010 66.667 0.00 0.00 45.34 2.32
837 1556 2.364186 CCAGGGGTGGGGCAAATC 60.364 66.667 0.00 0.00 0.00 2.17
838 1557 2.444696 CAGGGGTGGGGCAAATCA 59.555 61.111 0.00 0.00 0.00 2.57
839 1558 1.002017 CAGGGGTGGGGCAAATCAT 59.998 57.895 0.00 0.00 0.00 2.45
840 1559 1.044790 CAGGGGTGGGGCAAATCATC 61.045 60.000 0.00 0.00 0.00 2.92
841 1560 1.001503 GGGGTGGGGCAAATCATCA 59.998 57.895 0.00 0.00 0.00 3.07
842 1561 0.617249 GGGGTGGGGCAAATCATCAA 60.617 55.000 0.00 0.00 0.00 2.57
843 1562 1.274712 GGGTGGGGCAAATCATCAAA 58.725 50.000 0.00 0.00 0.00 2.69
844 1563 1.207811 GGGTGGGGCAAATCATCAAAG 59.792 52.381 0.00 0.00 0.00 2.77
845 1564 1.901833 GGTGGGGCAAATCATCAAAGT 59.098 47.619 0.00 0.00 0.00 2.66
846 1565 2.302733 GGTGGGGCAAATCATCAAAGTT 59.697 45.455 0.00 0.00 0.00 2.66
847 1566 3.513515 GGTGGGGCAAATCATCAAAGTTA 59.486 43.478 0.00 0.00 0.00 2.24
848 1567 4.381932 GGTGGGGCAAATCATCAAAGTTAG 60.382 45.833 0.00 0.00 0.00 2.34
849 1568 4.462483 GTGGGGCAAATCATCAAAGTTAGA 59.538 41.667 0.00 0.00 0.00 2.10
850 1569 5.047377 GTGGGGCAAATCATCAAAGTTAGAA 60.047 40.000 0.00 0.00 0.00 2.10
851 1570 5.185635 TGGGGCAAATCATCAAAGTTAGAAG 59.814 40.000 0.00 0.00 0.00 2.85
852 1571 5.185828 GGGGCAAATCATCAAAGTTAGAAGT 59.814 40.000 0.00 0.00 0.00 3.01
853 1572 6.377146 GGGGCAAATCATCAAAGTTAGAAGTA 59.623 38.462 0.00 0.00 0.00 2.24
854 1573 7.093945 GGGGCAAATCATCAAAGTTAGAAGTAA 60.094 37.037 0.00 0.00 0.00 2.24
855 1574 8.303876 GGGCAAATCATCAAAGTTAGAAGTAAA 58.696 33.333 0.00 0.00 0.00 2.01
856 1575 9.346725 GGCAAATCATCAAAGTTAGAAGTAAAG 57.653 33.333 0.00 0.00 0.00 1.85
857 1576 9.899226 GCAAATCATCAAAGTTAGAAGTAAAGT 57.101 29.630 0.00 0.00 0.00 2.66
861 1580 8.378172 TCATCAAAGTTAGAAGTAAAGTGTGG 57.622 34.615 0.00 0.00 0.00 4.17
862 1581 7.444183 TCATCAAAGTTAGAAGTAAAGTGTGGG 59.556 37.037 0.00 0.00 0.00 4.61
863 1582 6.655930 TCAAAGTTAGAAGTAAAGTGTGGGT 58.344 36.000 0.00 0.00 0.00 4.51
864 1583 7.114095 TCAAAGTTAGAAGTAAAGTGTGGGTT 58.886 34.615 0.00 0.00 0.00 4.11
865 1584 8.266473 TCAAAGTTAGAAGTAAAGTGTGGGTTA 58.734 33.333 0.00 0.00 0.00 2.85
866 1585 8.895737 CAAAGTTAGAAGTAAAGTGTGGGTTAA 58.104 33.333 0.00 0.00 0.00 2.01
867 1586 9.636789 AAAGTTAGAAGTAAAGTGTGGGTTAAT 57.363 29.630 0.00 0.00 0.00 1.40
871 1590 9.590451 TTAGAAGTAAAGTGTGGGTTAATATCG 57.410 33.333 0.00 0.00 0.00 2.92
872 1591 7.844009 AGAAGTAAAGTGTGGGTTAATATCGA 58.156 34.615 0.00 0.00 0.00 3.59
873 1592 8.316214 AGAAGTAAAGTGTGGGTTAATATCGAA 58.684 33.333 0.00 0.00 0.00 3.71
874 1593 9.106070 GAAGTAAAGTGTGGGTTAATATCGAAT 57.894 33.333 0.00 0.00 0.00 3.34
875 1594 9.457436 AAGTAAAGTGTGGGTTAATATCGAATT 57.543 29.630 0.00 0.00 0.00 2.17
876 1595 9.457436 AGTAAAGTGTGGGTTAATATCGAATTT 57.543 29.630 0.00 0.00 0.00 1.82
877 1596 9.712359 GTAAAGTGTGGGTTAATATCGAATTTC 57.288 33.333 0.00 0.00 0.00 2.17
878 1597 8.575649 AAAGTGTGGGTTAATATCGAATTTCT 57.424 30.769 0.00 0.00 0.00 2.52
879 1598 7.787725 AGTGTGGGTTAATATCGAATTTCTC 57.212 36.000 0.00 0.00 0.00 2.87
887 1606 7.439655 GGTTAATATCGAATTTCTCTGCTCTGT 59.560 37.037 0.00 0.00 0.00 3.41
890 1609 2.562738 TCGAATTTCTCTGCTCTGTCCA 59.437 45.455 0.00 0.00 0.00 4.02
1017 1736 0.107643 GGATGAGGAGCTGGGCTAAC 59.892 60.000 0.00 0.00 39.88 2.34
1155 1874 2.323939 TTTGTACGCGCAATTCTTGG 57.676 45.000 5.73 0.00 0.00 3.61
1221 1940 6.385649 AAAATCAGTCTTTAAACCGCTCAA 57.614 33.333 0.00 0.00 0.00 3.02
1225 1944 5.757886 TCAGTCTTTAAACCGCTCAAATTG 58.242 37.500 0.00 0.00 0.00 2.32
1253 1972 7.526359 GCAAGTTAGGAATTTTGGGGTGAAATA 60.526 37.037 0.00 0.00 0.00 1.40
1313 2036 6.765512 ACCCTAGTATTTCGTACTACAGAGTC 59.234 42.308 0.00 0.00 41.84 3.36
1363 2094 2.259818 CGTTCTGGACGCTGCTCT 59.740 61.111 0.00 0.00 45.86 4.09
1365 2096 1.005630 GTTCTGGACGCTGCTCTGT 60.006 57.895 0.00 0.00 0.00 3.41
1389 2120 3.266772 AGGTCCAAGCCATCTTTGTATCA 59.733 43.478 0.00 0.00 0.00 2.15
1394 2125 3.131709 AGCCATCTTTGTATCATCCGG 57.868 47.619 0.00 0.00 0.00 5.14
1421 2152 1.444119 TTGTGTCGGTCCTTGCAAGC 61.444 55.000 21.43 8.23 0.00 4.01
1468 2199 1.069296 GCTCAACGCTATGCACACAAA 60.069 47.619 0.00 0.00 35.14 2.83
1469 2200 2.843077 CTCAACGCTATGCACACAAAG 58.157 47.619 0.00 0.00 0.00 2.77
1470 2201 1.069296 TCAACGCTATGCACACAAAGC 60.069 47.619 0.00 0.00 0.00 3.51
1476 2207 4.732285 GCTATGCACACAAAGCGTATAT 57.268 40.909 0.00 0.00 33.41 0.86
1478 2209 6.223138 GCTATGCACACAAAGCGTATATAA 57.777 37.500 0.00 0.00 33.41 0.98
1479 2210 6.071463 GCTATGCACACAAAGCGTATATAAC 58.929 40.000 0.00 0.00 33.41 1.89
1512 2243 4.818534 TGAAGAATTTGCTCTGTGACAC 57.181 40.909 0.00 0.00 0.00 3.67
1555 2286 9.535170 TGACAATTTGTTAAATCAATAGGGGTA 57.465 29.630 3.08 0.00 0.00 3.69
1573 2304 4.338400 GGGGTAGTCCAAATCTTATGCAAC 59.662 45.833 0.00 0.00 37.22 4.17
1943 2674 2.492484 GGCTATACCCATAGTCCAGACG 59.508 54.545 0.00 0.00 37.13 4.18
1944 2675 3.155501 GCTATACCCATAGTCCAGACGT 58.844 50.000 0.00 0.00 37.13 4.34
1945 2676 3.573110 GCTATACCCATAGTCCAGACGTT 59.427 47.826 0.00 0.00 37.13 3.99
1946 2677 4.038883 GCTATACCCATAGTCCAGACGTTT 59.961 45.833 0.00 0.00 37.13 3.60
1947 2678 4.667519 ATACCCATAGTCCAGACGTTTC 57.332 45.455 0.00 0.00 36.20 2.78
1948 2679 2.253610 ACCCATAGTCCAGACGTTTCA 58.746 47.619 0.00 0.00 36.20 2.69
1949 2680 2.233922 ACCCATAGTCCAGACGTTTCAG 59.766 50.000 0.00 0.00 36.20 3.02
1950 2681 2.271800 CCATAGTCCAGACGTTTCAGC 58.728 52.381 0.00 0.00 36.20 4.26
1951 2682 2.093973 CCATAGTCCAGACGTTTCAGCT 60.094 50.000 0.00 0.00 36.20 4.24
1952 2683 2.724977 TAGTCCAGACGTTTCAGCTG 57.275 50.000 7.63 7.63 36.20 4.24
1953 2684 1.040646 AGTCCAGACGTTTCAGCTGA 58.959 50.000 13.74 13.74 36.20 4.26
1954 2685 1.412710 AGTCCAGACGTTTCAGCTGAA 59.587 47.619 25.16 25.16 36.20 3.02
1955 2686 2.037772 AGTCCAGACGTTTCAGCTGAAT 59.962 45.455 28.89 15.24 36.20 2.57
1956 2687 2.158449 GTCCAGACGTTTCAGCTGAATG 59.842 50.000 28.89 24.53 33.54 2.67
1957 2688 2.146342 CCAGACGTTTCAGCTGAATGT 58.854 47.619 28.89 27.26 33.54 2.71
1958 2689 2.549754 CCAGACGTTTCAGCTGAATGTT 59.450 45.455 28.89 15.79 33.54 2.71
1959 2690 3.364366 CCAGACGTTTCAGCTGAATGTTC 60.364 47.826 28.89 22.28 33.54 3.18
1960 2691 3.248363 CAGACGTTTCAGCTGAATGTTCA 59.752 43.478 28.89 11.78 33.54 3.18
1961 2692 4.067896 AGACGTTTCAGCTGAATGTTCAT 58.932 39.130 28.89 16.37 36.46 2.57
1962 2693 4.083643 AGACGTTTCAGCTGAATGTTCATG 60.084 41.667 28.89 20.15 36.46 3.07
1963 2694 3.814842 ACGTTTCAGCTGAATGTTCATGA 59.185 39.130 28.89 9.49 36.46 3.07
1964 2695 4.275689 ACGTTTCAGCTGAATGTTCATGAA 59.724 37.500 28.89 8.74 35.53 2.57
1965 2696 5.214417 CGTTTCAGCTGAATGTTCATGAAA 58.786 37.500 28.89 15.33 40.78 2.69
1966 2697 5.860182 CGTTTCAGCTGAATGTTCATGAAAT 59.140 36.000 28.89 3.66 42.89 2.17
1967 2698 6.033196 CGTTTCAGCTGAATGTTCATGAAATC 59.967 38.462 28.89 9.63 42.89 2.17
1968 2699 6.829229 TTCAGCTGAATGTTCATGAAATCT 57.171 33.333 25.16 0.00 34.84 2.40
1969 2700 6.190954 TCAGCTGAATGTTCATGAAATCTG 57.809 37.500 15.67 13.10 36.46 2.90
1970 2701 5.941647 TCAGCTGAATGTTCATGAAATCTGA 59.058 36.000 15.67 7.99 36.46 3.27
1971 2702 6.093633 TCAGCTGAATGTTCATGAAATCTGAG 59.906 38.462 15.67 5.31 36.46 3.35
1972 2703 5.944599 AGCTGAATGTTCATGAAATCTGAGT 59.055 36.000 10.35 2.66 36.46 3.41
1973 2704 6.433404 AGCTGAATGTTCATGAAATCTGAGTT 59.567 34.615 10.35 0.00 36.46 3.01
1974 2705 7.609146 AGCTGAATGTTCATGAAATCTGAGTTA 59.391 33.333 10.35 0.00 36.46 2.24
1975 2706 8.404000 GCTGAATGTTCATGAAATCTGAGTTAT 58.596 33.333 10.35 0.00 36.46 1.89
1978 2709 9.512435 GAATGTTCATGAAATCTGAGTTATTGG 57.488 33.333 10.35 0.00 0.00 3.16
1979 2710 6.855836 TGTTCATGAAATCTGAGTTATTGGC 58.144 36.000 10.35 0.00 0.00 4.52
1980 2711 6.433716 TGTTCATGAAATCTGAGTTATTGGCA 59.566 34.615 10.35 0.00 0.00 4.92
1981 2712 7.039853 TGTTCATGAAATCTGAGTTATTGGCAA 60.040 33.333 10.35 0.68 0.00 4.52
1982 2713 7.649533 TCATGAAATCTGAGTTATTGGCAAT 57.350 32.000 18.01 18.01 0.00 3.56
1983 2714 7.485810 TCATGAAATCTGAGTTATTGGCAATG 58.514 34.615 22.57 4.85 0.00 2.82
1984 2715 5.653507 TGAAATCTGAGTTATTGGCAATGC 58.346 37.500 22.57 14.48 0.00 3.56
1998 2729 3.738830 GCAATGCCATATTGTCACCAT 57.261 42.857 0.00 0.00 0.00 3.55
1999 2730 4.852134 GCAATGCCATATTGTCACCATA 57.148 40.909 0.00 0.00 0.00 2.74
2000 2731 4.549458 GCAATGCCATATTGTCACCATAC 58.451 43.478 0.00 0.00 0.00 2.39
2001 2732 4.279169 GCAATGCCATATTGTCACCATACT 59.721 41.667 0.00 0.00 0.00 2.12
2002 2733 5.221303 GCAATGCCATATTGTCACCATACTT 60.221 40.000 0.00 0.00 0.00 2.24
2003 2734 6.441274 CAATGCCATATTGTCACCATACTTC 58.559 40.000 0.00 0.00 0.00 3.01
2004 2735 4.460263 TGCCATATTGTCACCATACTTCC 58.540 43.478 0.00 0.00 0.00 3.46
2005 2736 4.165950 TGCCATATTGTCACCATACTTCCT 59.834 41.667 0.00 0.00 0.00 3.36
2006 2737 4.757149 GCCATATTGTCACCATACTTCCTC 59.243 45.833 0.00 0.00 0.00 3.71
2007 2738 4.991056 CCATATTGTCACCATACTTCCTCG 59.009 45.833 0.00 0.00 0.00 4.63
2008 2739 5.221441 CCATATTGTCACCATACTTCCTCGA 60.221 44.000 0.00 0.00 0.00 4.04
2009 2740 6.459066 CATATTGTCACCATACTTCCTCGAT 58.541 40.000 0.00 0.00 0.00 3.59
2010 2741 4.386867 TTGTCACCATACTTCCTCGATC 57.613 45.455 0.00 0.00 0.00 3.69
2011 2742 3.632333 TGTCACCATACTTCCTCGATCT 58.368 45.455 0.00 0.00 0.00 2.75
2012 2743 3.381590 TGTCACCATACTTCCTCGATCTG 59.618 47.826 0.00 0.00 0.00 2.90
2013 2744 2.959030 TCACCATACTTCCTCGATCTGG 59.041 50.000 0.00 0.00 0.00 3.86
2014 2745 1.689273 ACCATACTTCCTCGATCTGGC 59.311 52.381 0.00 0.00 0.00 4.85
2015 2746 1.001406 CCATACTTCCTCGATCTGGCC 59.999 57.143 0.00 0.00 0.00 5.36
2016 2747 1.688735 CATACTTCCTCGATCTGGCCA 59.311 52.381 4.71 4.71 0.00 5.36
2017 2748 1.403814 TACTTCCTCGATCTGGCCAG 58.596 55.000 27.87 27.87 0.00 4.85
2018 2749 0.324738 ACTTCCTCGATCTGGCCAGA 60.325 55.000 36.73 36.73 42.37 3.86
2019 2750 0.103937 CTTCCTCGATCTGGCCAGAC 59.896 60.000 37.39 26.91 40.75 3.51
2027 2758 2.297315 CGATCTGGCCAGACTAGCAATA 59.703 50.000 37.39 12.80 40.75 1.90
2121 2852 6.183360 TGCTGAAAATTTTGTCTGGAGATGTT 60.183 34.615 8.47 0.00 0.00 2.71
2192 2923 4.153475 CCTACCCAAAGACACATGTTTACG 59.847 45.833 0.00 0.00 0.00 3.18
2193 2924 3.547746 ACCCAAAGACACATGTTTACGT 58.452 40.909 0.00 0.00 0.00 3.57
2194 2925 4.706035 ACCCAAAGACACATGTTTACGTA 58.294 39.130 0.00 0.00 0.00 3.57
2250 2981 0.191064 ACCTGACTTCCCTGGTCTGA 59.809 55.000 0.00 0.00 33.83 3.27
2263 2994 4.641989 CCCTGGTCTGACTAATTTGGATTG 59.358 45.833 7.85 0.00 0.00 2.67
2349 3084 7.944729 AACCAGTTGCTACAGATGAAATTAT 57.055 32.000 0.13 0.00 0.00 1.28
2352 3087 7.611467 ACCAGTTGCTACAGATGAAATTATGAA 59.389 33.333 0.13 0.00 0.00 2.57
2353 3088 8.627403 CCAGTTGCTACAGATGAAATTATGAAT 58.373 33.333 0.13 0.00 0.00 2.57
2371 3108 3.766591 TGAATGTTTTATTCCGGGCATGT 59.233 39.130 0.00 0.00 0.00 3.21
2381 3118 0.888736 CCGGGCATGTCACACAAGAA 60.889 55.000 0.00 0.00 0.00 2.52
2386 3123 3.568538 GGCATGTCACACAAGAAATGTC 58.431 45.455 0.00 0.00 41.46 3.06
2387 3124 3.004629 GGCATGTCACACAAGAAATGTCA 59.995 43.478 0.00 0.00 41.46 3.58
2433 3170 5.363580 CCATGGCAATACAAATAAGGTCCTT 59.636 40.000 9.62 9.62 0.00 3.36
2455 3193 9.280456 TCCTTACCCAGATCTTTCTTAAGTAAT 57.720 33.333 1.63 0.00 32.98 1.89
2517 3255 2.836154 GTGGCCAGGAGACACCAA 59.164 61.111 5.11 0.00 42.04 3.67
2632 3370 9.500785 TTGATAACTTGTTTGTACATGATCTCA 57.499 29.630 0.00 0.00 34.47 3.27
2727 3468 5.353394 AACTTGACACAGGAAACTACTCA 57.647 39.130 0.00 0.00 40.21 3.41
2755 3496 7.994334 ACTTGACCAACTTAACTTTATACCACA 59.006 33.333 0.00 0.00 0.00 4.17
3034 3790 1.948834 CAAAGCCACACACACATGAGA 59.051 47.619 0.00 0.00 0.00 3.27
3512 4278 7.965107 GCACAAGTATGATGTTCCTCTTTTTAG 59.035 37.037 0.00 0.00 0.00 1.85
3530 4297 8.562052 TCTTTTTAGGTCTGTTATTTTCGTTCC 58.438 33.333 0.00 0.00 0.00 3.62
3533 4300 5.223449 AGGTCTGTTATTTTCGTTCCTCA 57.777 39.130 0.00 0.00 0.00 3.86
3653 4426 6.326375 TGTTGGTGAATTCAACTTTGTGTAC 58.674 36.000 23.46 10.56 43.36 2.90
3662 4465 9.836076 GAATTCAACTTTGTGTACTTATTACCC 57.164 33.333 0.00 0.00 0.00 3.69
3663 4466 7.748691 TTCAACTTTGTGTACTTATTACCCC 57.251 36.000 0.00 0.00 0.00 4.95
3664 4467 6.240145 TCAACTTTGTGTACTTATTACCCCC 58.760 40.000 0.00 0.00 0.00 5.40
3666 4469 6.058553 ACTTTGTGTACTTATTACCCCCTC 57.941 41.667 0.00 0.00 0.00 4.30
3667 4470 5.789054 ACTTTGTGTACTTATTACCCCCTCT 59.211 40.000 0.00 0.00 0.00 3.69
3668 4471 5.687166 TTGTGTACTTATTACCCCCTCTG 57.313 43.478 0.00 0.00 0.00 3.35
3669 4472 4.950361 TGTGTACTTATTACCCCCTCTGA 58.050 43.478 0.00 0.00 0.00 3.27
3672 4475 5.011840 GTGTACTTATTACCCCCTCTGATCC 59.988 48.000 0.00 0.00 0.00 3.36
3673 4476 4.295905 ACTTATTACCCCCTCTGATCCA 57.704 45.455 0.00 0.00 0.00 3.41
3674 4477 4.641868 ACTTATTACCCCCTCTGATCCAA 58.358 43.478 0.00 0.00 0.00 3.53
3677 4480 6.162241 ACTTATTACCCCCTCTGATCCAAAAT 59.838 38.462 0.00 0.00 0.00 1.82
3678 4481 7.352522 ACTTATTACCCCCTCTGATCCAAAATA 59.647 37.037 0.00 0.00 0.00 1.40
3679 4482 6.606241 ATTACCCCCTCTGATCCAAAATAA 57.394 37.500 0.00 0.00 0.00 1.40
3680 4483 4.526438 ACCCCCTCTGATCCAAAATAAG 57.474 45.455 0.00 0.00 0.00 1.73
3682 4485 4.210331 CCCCCTCTGATCCAAAATAAGTG 58.790 47.826 0.00 0.00 0.00 3.16
3683 4486 4.325344 CCCCCTCTGATCCAAAATAAGTGT 60.325 45.833 0.00 0.00 0.00 3.55
3684 4487 4.884164 CCCCTCTGATCCAAAATAAGTGTC 59.116 45.833 0.00 0.00 0.00 3.67
3685 4488 4.572389 CCCTCTGATCCAAAATAAGTGTCG 59.428 45.833 0.00 0.00 0.00 4.35
3686 4489 4.034510 CCTCTGATCCAAAATAAGTGTCGC 59.965 45.833 0.00 0.00 0.00 5.19
3687 4490 4.574892 TCTGATCCAAAATAAGTGTCGCA 58.425 39.130 0.00 0.00 0.00 5.10
3688 4491 4.631377 TCTGATCCAAAATAAGTGTCGCAG 59.369 41.667 0.00 0.00 0.00 5.18
3689 4492 3.126858 TGATCCAAAATAAGTGTCGCAGC 59.873 43.478 0.00 0.00 0.00 5.25
3690 4493 2.778299 TCCAAAATAAGTGTCGCAGCT 58.222 42.857 0.00 0.00 0.00 4.24
3691 4494 3.146066 TCCAAAATAAGTGTCGCAGCTT 58.854 40.909 0.00 0.00 0.00 3.74
3692 4495 3.568007 TCCAAAATAAGTGTCGCAGCTTT 59.432 39.130 0.00 0.00 0.00 3.51
3693 4496 3.670055 CCAAAATAAGTGTCGCAGCTTTG 59.330 43.478 0.00 0.00 0.00 2.77
3694 4497 4.536065 CAAAATAAGTGTCGCAGCTTTGA 58.464 39.130 0.00 0.00 0.00 2.69
3695 4498 4.829064 AAATAAGTGTCGCAGCTTTGAA 57.171 36.364 0.00 0.00 0.00 2.69
3696 4499 3.813529 ATAAGTGTCGCAGCTTTGAAC 57.186 42.857 0.00 0.00 0.00 3.18
3697 4500 1.668419 AAGTGTCGCAGCTTTGAACT 58.332 45.000 0.00 0.00 0.00 3.01
3698 4501 2.526304 AGTGTCGCAGCTTTGAACTA 57.474 45.000 0.00 0.00 0.00 2.24
3699 4502 2.833794 AGTGTCGCAGCTTTGAACTAA 58.166 42.857 0.00 0.00 0.00 2.24
3700 4503 2.802816 AGTGTCGCAGCTTTGAACTAAG 59.197 45.455 0.00 0.00 0.00 2.18
3701 4504 2.096218 GTGTCGCAGCTTTGAACTAAGG 60.096 50.000 0.00 0.00 0.00 2.69
3702 4505 2.143925 GTCGCAGCTTTGAACTAAGGT 58.856 47.619 0.00 0.00 36.35 3.50
3703 4506 2.548480 GTCGCAGCTTTGAACTAAGGTT 59.452 45.455 0.00 0.00 38.52 3.50
3704 4507 3.744426 GTCGCAGCTTTGAACTAAGGTTA 59.256 43.478 0.00 0.00 35.58 2.85
3705 4508 3.994392 TCGCAGCTTTGAACTAAGGTTAG 59.006 43.478 0.00 0.00 35.58 2.34
3706 4509 3.746492 CGCAGCTTTGAACTAAGGTTAGT 59.254 43.478 0.00 0.00 45.43 2.24
3758 4561 2.275134 TGCTTGGCAGATCTTTGTGA 57.725 45.000 0.00 0.00 33.32 3.58
3882 4685 8.655651 TTATTTTGTTTGAACTGCCCTAAAAG 57.344 30.769 0.00 0.00 0.00 2.27
3883 4686 5.923733 TTTGTTTGAACTGCCCTAAAAGA 57.076 34.783 0.00 0.00 0.00 2.52
3884 4687 6.478512 TTTGTTTGAACTGCCCTAAAAGAT 57.521 33.333 0.00 0.00 0.00 2.40
3888 4709 2.825532 TGAACTGCCCTAAAAGATTGCC 59.174 45.455 0.00 0.00 0.00 4.52
4047 4872 6.644347 TCCTTGGCTTTGTTAATTTTGTTGA 58.356 32.000 0.00 0.00 0.00 3.18
4103 4929 5.289675 GCCTATGTAGATAGCATTTACAGCG 59.710 44.000 1.28 0.00 37.01 5.18
4348 5174 1.465172 GGGCTCCAAACCTTTCCCT 59.535 57.895 0.00 0.00 0.00 4.20
4380 5206 5.279256 GCAGGGTGAGCAATTTTTAACCTAA 60.279 40.000 0.00 0.00 0.00 2.69
4436 5271 8.144478 TCTATTAAGCTTCATAGTAGCCAGTTG 58.856 37.037 21.50 0.49 39.47 3.16
4445 5280 3.710209 AGTAGCCAGTTGAGCTTCATT 57.290 42.857 0.00 0.00 41.83 2.57
4538 5377 8.937884 TCCGTAAGATAAAATCGTTCATTTTCA 58.062 29.630 0.00 0.00 41.17 2.69
5016 5855 1.065551 GTGCACAAGAAAAAGCCGTCT 59.934 47.619 13.17 0.00 0.00 4.18
5033 5872 4.382793 GCCGTCTTAGTTGTAAGATCCCTT 60.383 45.833 0.00 0.00 45.16 3.95
5171 6013 3.181527 CGATCAATACATCGCGATTGCAT 60.182 43.478 21.14 9.88 42.97 3.96
5526 6651 2.904866 CGCTCCCTCTCCCTCTCG 60.905 72.222 0.00 0.00 0.00 4.04
5540 6665 4.471726 CTCGGTAACTCGCGCCGT 62.472 66.667 19.13 8.36 45.11 5.68
5556 6681 2.275418 GTGCCCCATCCCGTTCAT 59.725 61.111 0.00 0.00 0.00 2.57
5562 6687 2.202878 CATCCCGTTCATCGCCGT 60.203 61.111 0.00 0.00 38.35 5.68
5570 6695 0.583438 GTTCATCGCCGTCATCATGG 59.417 55.000 0.00 0.00 0.00 3.66
5605 6730 2.207924 AGTCTCCAACCCGTTCGCT 61.208 57.895 0.00 0.00 0.00 4.93
5638 6763 1.436336 CCTCGTCCGCGACCTTAAT 59.564 57.895 8.23 0.00 42.81 1.40
5847 6972 0.459237 CTCACCATCTCCAGCGACAC 60.459 60.000 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.087009 GGAGAACAACGCCGAGACG 61.087 63.158 0.00 0.00 39.50 4.18
34 35 0.303493 GTCGCGAGCAAACAAGACAA 59.697 50.000 10.24 0.00 0.00 3.18
52 53 4.537751 TCTAGATCCAGAACCGAAGATGT 58.462 43.478 0.00 0.00 0.00 3.06
53 54 4.824537 TCTCTAGATCCAGAACCGAAGATG 59.175 45.833 0.00 0.00 0.00 2.90
54 55 5.055265 TCTCTAGATCCAGAACCGAAGAT 57.945 43.478 0.00 0.00 0.00 2.40
66 67 4.151883 AGATGACCAGCTTCTCTAGATCC 58.848 47.826 0.00 0.00 0.00 3.36
72 73 3.072184 ACAACAAGATGACCAGCTTCTCT 59.928 43.478 0.00 0.00 34.42 3.10
75 76 3.304928 CCAACAACAAGATGACCAGCTTC 60.305 47.826 0.00 0.00 34.42 3.86
79 80 4.362279 CAAACCAACAACAAGATGACCAG 58.638 43.478 0.00 0.00 0.00 4.00
81 82 3.492482 CCCAAACCAACAACAAGATGACC 60.492 47.826 0.00 0.00 0.00 4.02
99 100 1.839994 CCATCCTGAGAAGTAGCCCAA 59.160 52.381 0.00 0.00 0.00 4.12
136 140 1.442769 GATGCTCGGCTCAAACAGAA 58.557 50.000 0.00 0.00 0.00 3.02
140 144 0.749454 ATGGGATGCTCGGCTCAAAC 60.749 55.000 0.00 0.00 0.00 2.93
148 152 1.039068 AGAGAGACATGGGATGCTCG 58.961 55.000 0.00 0.00 37.99 5.03
170 174 1.963855 CGTGAACATGTTGCCCGGA 60.964 57.895 17.58 0.00 0.00 5.14
174 178 1.210155 GAGGCGTGAACATGTTGCC 59.790 57.895 24.08 24.08 46.07 4.52
178 182 1.229428 CACAAGAGGCGTGAACATGT 58.771 50.000 0.00 0.00 36.43 3.21
266 270 4.499758 TGGTTTTTCACGAATACGCAAAAC 59.500 37.500 0.00 0.00 43.96 2.43
267 271 4.669318 TGGTTTTTCACGAATACGCAAAA 58.331 34.783 0.00 0.00 43.96 2.44
271 275 3.666797 CCTTTGGTTTTTCACGAATACGC 59.333 43.478 0.00 0.00 43.96 4.42
272 276 3.666797 GCCTTTGGTTTTTCACGAATACG 59.333 43.478 0.00 0.00 45.75 3.06
288 292 3.365265 AAGCTTCCGCCGCCTTTG 61.365 61.111 0.00 0.00 36.60 2.77
291 295 4.101448 ATCAAGCTTCCGCCGCCT 62.101 61.111 0.00 0.00 36.60 5.52
292 296 3.577313 GATCAAGCTTCCGCCGCC 61.577 66.667 0.00 0.00 36.60 6.13
293 297 3.577313 GGATCAAGCTTCCGCCGC 61.577 66.667 0.00 0.00 36.60 6.53
294 298 0.249868 TATGGATCAAGCTTCCGCCG 60.250 55.000 0.00 0.00 35.94 6.46
296 300 2.351157 GCAATATGGATCAAGCTTCCGC 60.351 50.000 0.00 0.00 35.94 5.54
297 301 2.880268 TGCAATATGGATCAAGCTTCCG 59.120 45.455 0.00 0.00 35.94 4.30
299 303 4.906065 TGTGCAATATGGATCAAGCTTC 57.094 40.909 0.00 0.00 0.00 3.86
301 305 3.382546 GGTTGTGCAATATGGATCAAGCT 59.617 43.478 0.00 0.00 30.95 3.74
302 306 3.130869 TGGTTGTGCAATATGGATCAAGC 59.869 43.478 0.00 0.00 32.60 4.01
303 307 4.987408 TGGTTGTGCAATATGGATCAAG 57.013 40.909 0.00 0.00 0.00 3.02
304 308 7.415592 TTTATGGTTGTGCAATATGGATCAA 57.584 32.000 0.00 0.00 0.00 2.57
305 309 7.415592 TTTTATGGTTGTGCAATATGGATCA 57.584 32.000 0.00 0.00 0.00 2.92
306 310 6.421801 GCTTTTATGGTTGTGCAATATGGATC 59.578 38.462 0.00 0.00 0.00 3.36
307 311 6.282930 GCTTTTATGGTTGTGCAATATGGAT 58.717 36.000 0.00 0.00 0.00 3.41
308 312 5.395103 GGCTTTTATGGTTGTGCAATATGGA 60.395 40.000 0.00 0.00 0.00 3.41
309 313 4.810491 GGCTTTTATGGTTGTGCAATATGG 59.190 41.667 0.00 0.00 0.00 2.74
310 314 5.417811 TGGCTTTTATGGTTGTGCAATATG 58.582 37.500 0.00 0.00 0.00 1.78
311 315 5.674052 TGGCTTTTATGGTTGTGCAATAT 57.326 34.783 0.00 0.00 0.00 1.28
314 318 3.827008 TTGGCTTTTATGGTTGTGCAA 57.173 38.095 0.00 0.00 0.00 4.08
318 322 7.775053 TCTAGATTTTGGCTTTTATGGTTGT 57.225 32.000 0.00 0.00 0.00 3.32
348 352 9.764363 CTTACATGACATATACCTTACACACAT 57.236 33.333 0.00 0.00 0.00 3.21
366 370 6.942005 AGTGGTTCAACATCAATCTTACATGA 59.058 34.615 0.00 0.00 0.00 3.07
367 371 7.149569 AGTGGTTCAACATCAATCTTACATG 57.850 36.000 0.00 0.00 0.00 3.21
388 392 5.930135 AGCAGGGTCCTACATATTTTAGTG 58.070 41.667 0.00 0.00 0.00 2.74
410 414 4.285292 CGTACCTAACGTATGGCACTTAG 58.715 47.826 6.66 0.00 46.72 2.18
420 424 4.974262 TGCATGTGCTCGTACCTAACGTA 61.974 47.826 6.55 0.00 44.83 3.57
427 431 0.721718 GAGTTGCATGTGCTCGTACC 59.278 55.000 6.55 0.00 42.66 3.34
429 433 0.320050 TGGAGTTGCATGTGCTCGTA 59.680 50.000 6.55 0.00 42.66 3.43
431 435 0.592637 TTTGGAGTTGCATGTGCTCG 59.407 50.000 6.55 0.00 42.66 5.03
432 436 2.029649 ACATTTGGAGTTGCATGTGCTC 60.030 45.455 6.55 0.00 42.66 4.26
433 437 1.965643 ACATTTGGAGTTGCATGTGCT 59.034 42.857 6.55 0.00 42.66 4.40
434 438 2.443887 ACATTTGGAGTTGCATGTGC 57.556 45.000 0.00 0.00 42.50 4.57
437 441 4.148696 GTCGAAAACATTTGGAGTTGCATG 59.851 41.667 0.00 0.00 0.00 4.06
438 442 4.298332 GTCGAAAACATTTGGAGTTGCAT 58.702 39.130 0.00 0.00 0.00 3.96
444 839 1.265635 TGCGGTCGAAAACATTTGGAG 59.734 47.619 0.00 0.00 0.00 3.86
446 841 2.050691 CTTGCGGTCGAAAACATTTGG 58.949 47.619 0.00 0.00 0.00 3.28
461 856 2.792674 TCTTCACGTCACTAAACTTGCG 59.207 45.455 0.00 0.00 0.00 4.85
469 865 3.189910 ACGTTGCTATCTTCACGTCACTA 59.810 43.478 0.00 0.00 0.00 2.74
476 872 2.472397 GCACGAACGTTGCTATCTTCAC 60.472 50.000 5.00 0.00 0.00 3.18
477 873 1.724623 GCACGAACGTTGCTATCTTCA 59.275 47.619 5.00 0.00 0.00 3.02
480 876 2.080286 AAGCACGAACGTTGCTATCT 57.920 45.000 13.29 0.00 38.01 1.98
481 877 2.875080 AAAGCACGAACGTTGCTATC 57.125 45.000 13.29 0.00 38.01 2.08
485 881 4.685824 AAAAATAAAGCACGAACGTTGC 57.314 36.364 5.00 3.48 0.00 4.17
512 908 1.013596 TGACACACGGCAAGTTTCTG 58.986 50.000 0.00 0.00 0.00 3.02
518 914 2.148916 TTCTAGTGACACACGGCAAG 57.851 50.000 8.59 0.00 39.64 4.01
521 917 2.806244 ACAATTTCTAGTGACACACGGC 59.194 45.455 8.59 0.00 39.64 5.68
530 926 6.864685 ACATGCATTGTTGACAATTTCTAGTG 59.135 34.615 6.62 4.13 43.48 2.74
533 929 7.085746 CAGACATGCATTGTTGACAATTTCTA 58.914 34.615 6.62 0.00 43.48 2.10
534 930 5.924254 CAGACATGCATTGTTGACAATTTCT 59.076 36.000 6.62 2.50 43.48 2.52
535 931 5.119588 CCAGACATGCATTGTTGACAATTTC 59.880 40.000 6.62 3.48 43.48 2.17
536 932 4.992319 CCAGACATGCATTGTTGACAATTT 59.008 37.500 6.62 0.00 43.48 1.82
537 933 4.281435 TCCAGACATGCATTGTTGACAATT 59.719 37.500 6.62 0.00 43.48 2.32
538 934 3.827876 TCCAGACATGCATTGTTGACAAT 59.172 39.130 0.00 3.60 46.62 2.71
539 935 3.220940 TCCAGACATGCATTGTTGACAA 58.779 40.909 0.00 0.00 39.18 3.18
542 938 4.523558 TCAATTCCAGACATGCATTGTTGA 59.476 37.500 0.00 0.00 39.18 3.18
570 966 2.504367 CACTCCGGTCCTGATGTTTTT 58.496 47.619 0.00 0.00 0.00 1.94
576 973 1.918293 TTGGCACTCCGGTCCTGAT 60.918 57.895 0.00 0.00 34.14 2.90
584 981 3.599285 TAAGGCGGTTGGCACTCCG 62.599 63.158 21.07 21.07 46.16 4.63
585 982 2.038837 GTAAGGCGGTTGGCACTCC 61.039 63.158 0.00 0.00 46.16 3.85
595 992 3.025866 GTGACTACACGTAAGGCGG 57.974 57.895 0.00 0.00 46.52 6.13
605 1002 8.664798 GCATACATAAAATGACAAGTGACTACA 58.335 33.333 0.00 0.00 0.00 2.74
606 1003 8.883731 AGCATACATAAAATGACAAGTGACTAC 58.116 33.333 0.00 0.00 0.00 2.73
608 1005 7.928307 AGCATACATAAAATGACAAGTGACT 57.072 32.000 0.00 0.00 0.00 3.41
609 1006 9.098355 TCTAGCATACATAAAATGACAAGTGAC 57.902 33.333 0.00 0.00 0.00 3.67
610 1007 9.836864 ATCTAGCATACATAAAATGACAAGTGA 57.163 29.630 0.00 0.00 0.00 3.41
611 1008 9.874215 CATCTAGCATACATAAAATGACAAGTG 57.126 33.333 0.00 0.00 0.00 3.16
640 1358 8.432805 ACTTCTTATCCTCGAATCCATACAAAT 58.567 33.333 0.00 0.00 0.00 2.32
660 1378 3.431415 GCCTAATTTGACCCCACTTCTT 58.569 45.455 0.00 0.00 0.00 2.52
682 1401 3.620374 TCAAAGCATCTTCAAGCGAGATC 59.380 43.478 0.00 0.00 31.66 2.75
689 1408 2.357009 CCCCGATCAAAGCATCTTCAAG 59.643 50.000 0.00 0.00 0.00 3.02
693 1412 4.647564 ATATCCCCGATCAAAGCATCTT 57.352 40.909 0.00 0.00 0.00 2.40
717 1436 7.188157 GTCCGTTGTCAATACTGTGTTAAAAA 58.812 34.615 0.00 0.00 0.00 1.94
718 1437 6.238429 GGTCCGTTGTCAATACTGTGTTAAAA 60.238 38.462 0.00 0.00 0.00 1.52
719 1438 5.236911 GGTCCGTTGTCAATACTGTGTTAAA 59.763 40.000 0.00 0.00 0.00 1.52
720 1439 4.751098 GGTCCGTTGTCAATACTGTGTTAA 59.249 41.667 0.00 0.00 0.00 2.01
721 1440 4.309099 GGTCCGTTGTCAATACTGTGTTA 58.691 43.478 0.00 0.00 0.00 2.41
722 1441 3.135994 GGTCCGTTGTCAATACTGTGTT 58.864 45.455 0.00 0.00 0.00 3.32
723 1442 2.549349 GGGTCCGTTGTCAATACTGTGT 60.549 50.000 0.00 0.00 0.00 3.72
724 1443 2.073816 GGGTCCGTTGTCAATACTGTG 58.926 52.381 0.00 0.00 0.00 3.66
725 1444 1.337447 CGGGTCCGTTGTCAATACTGT 60.337 52.381 0.55 0.00 34.35 3.55
726 1445 1.355971 CGGGTCCGTTGTCAATACTG 58.644 55.000 0.55 0.00 34.35 2.74
727 1446 0.248289 CCGGGTCCGTTGTCAATACT 59.752 55.000 8.67 0.00 37.81 2.12
728 1447 0.741927 CCCGGGTCCGTTGTCAATAC 60.742 60.000 14.18 0.00 37.81 1.89
729 1448 0.903924 TCCCGGGTCCGTTGTCAATA 60.904 55.000 22.86 0.00 37.81 1.90
730 1449 1.559065 ATCCCGGGTCCGTTGTCAAT 61.559 55.000 22.86 0.00 37.81 2.57
731 1450 2.175035 GATCCCGGGTCCGTTGTCAA 62.175 60.000 22.86 0.00 37.81 3.18
732 1451 2.605295 ATCCCGGGTCCGTTGTCA 60.605 61.111 22.86 0.00 37.81 3.58
733 1452 2.186125 GATCCCGGGTCCGTTGTC 59.814 66.667 22.86 4.90 37.81 3.18
734 1453 2.284405 AGATCCCGGGTCCGTTGT 60.284 61.111 22.86 0.00 37.81 3.32
735 1454 2.186903 CAGATCCCGGGTCCGTTG 59.813 66.667 22.86 9.47 37.81 4.10
736 1455 2.891307 ATCCAGATCCCGGGTCCGTT 62.891 60.000 22.86 0.91 37.81 4.44
737 1456 3.390671 ATCCAGATCCCGGGTCCGT 62.391 63.158 22.86 5.15 37.81 4.69
738 1457 2.524394 ATCCAGATCCCGGGTCCG 60.524 66.667 22.86 9.73 39.44 4.79
739 1458 0.838122 ATGATCCAGATCCCGGGTCC 60.838 60.000 22.86 13.66 37.02 4.46
740 1459 1.827969 CTATGATCCAGATCCCGGGTC 59.172 57.143 22.86 17.28 37.02 4.46
741 1460 1.553417 CCTATGATCCAGATCCCGGGT 60.553 57.143 22.86 8.01 37.02 5.28
742 1461 1.198713 CCTATGATCCAGATCCCGGG 58.801 60.000 16.85 16.85 37.02 5.73
743 1462 1.198713 CCCTATGATCCAGATCCCGG 58.801 60.000 5.22 0.00 37.02 5.73
744 1463 1.944177 ACCCTATGATCCAGATCCCG 58.056 55.000 5.22 0.00 37.02 5.14
745 1464 3.652869 TCAAACCCTATGATCCAGATCCC 59.347 47.826 5.22 0.00 37.02 3.85
746 1465 4.982241 TCAAACCCTATGATCCAGATCC 57.018 45.455 5.22 0.00 37.02 3.36
747 1466 6.119240 TCATCAAACCCTATGATCCAGATC 57.881 41.667 0.47 0.47 35.38 2.75
748 1467 6.715350 ATCATCAAACCCTATGATCCAGAT 57.285 37.500 0.00 0.00 38.19 2.90
749 1468 6.520021 AATCATCAAACCCTATGATCCAGA 57.480 37.500 0.00 0.00 40.98 3.86
750 1469 6.516194 GCAAATCATCAAACCCTATGATCCAG 60.516 42.308 0.00 0.00 40.98 3.86
751 1470 5.302568 GCAAATCATCAAACCCTATGATCCA 59.697 40.000 0.00 0.00 40.98 3.41
752 1471 5.279156 GGCAAATCATCAAACCCTATGATCC 60.279 44.000 0.00 0.00 40.98 3.36
753 1472 5.279156 GGGCAAATCATCAAACCCTATGATC 60.279 44.000 0.00 0.00 40.98 2.92
754 1473 4.590222 GGGCAAATCATCAAACCCTATGAT 59.410 41.667 0.00 0.00 43.10 2.45
755 1474 3.960102 GGGCAAATCATCAAACCCTATGA 59.040 43.478 0.00 0.00 36.60 2.15
756 1475 3.243501 CGGGCAAATCATCAAACCCTATG 60.244 47.826 0.00 0.00 35.05 2.23
757 1476 2.958355 CGGGCAAATCATCAAACCCTAT 59.042 45.455 0.00 0.00 35.05 2.57
758 1477 2.374184 CGGGCAAATCATCAAACCCTA 58.626 47.619 0.00 0.00 35.05 3.53
759 1478 1.185315 CGGGCAAATCATCAAACCCT 58.815 50.000 0.00 0.00 35.05 4.34
760 1479 0.175531 CCGGGCAAATCATCAAACCC 59.824 55.000 0.00 0.00 0.00 4.11
761 1480 0.894835 ACCGGGCAAATCATCAAACC 59.105 50.000 6.32 0.00 0.00 3.27
762 1481 2.288763 ACAACCGGGCAAATCATCAAAC 60.289 45.455 6.32 0.00 0.00 2.93
763 1482 1.967066 ACAACCGGGCAAATCATCAAA 59.033 42.857 6.32 0.00 0.00 2.69
764 1483 1.543802 GACAACCGGGCAAATCATCAA 59.456 47.619 6.32 0.00 0.00 2.57
765 1484 1.173043 GACAACCGGGCAAATCATCA 58.827 50.000 6.32 0.00 0.00 3.07
766 1485 1.401905 GAGACAACCGGGCAAATCATC 59.598 52.381 6.32 0.00 0.00 2.92
767 1486 1.271871 TGAGACAACCGGGCAAATCAT 60.272 47.619 6.32 0.00 0.00 2.45
768 1487 0.109532 TGAGACAACCGGGCAAATCA 59.890 50.000 6.32 1.06 0.00 2.57
769 1488 0.804989 CTGAGACAACCGGGCAAATC 59.195 55.000 6.32 0.00 0.00 2.17
770 1489 0.110486 ACTGAGACAACCGGGCAAAT 59.890 50.000 6.32 0.00 0.00 2.32
771 1490 0.817634 CACTGAGACAACCGGGCAAA 60.818 55.000 6.32 0.00 0.00 3.68
772 1491 1.227823 CACTGAGACAACCGGGCAA 60.228 57.895 6.32 0.00 0.00 4.52
773 1492 2.425592 CACTGAGACAACCGGGCA 59.574 61.111 6.32 0.00 0.00 5.36
774 1493 2.358737 CCACTGAGACAACCGGGC 60.359 66.667 6.32 0.00 0.00 6.13
775 1494 1.541310 TAGCCACTGAGACAACCGGG 61.541 60.000 6.32 0.00 0.00 5.73
776 1495 0.108615 CTAGCCACTGAGACAACCGG 60.109 60.000 0.00 0.00 0.00 5.28
777 1496 0.603569 ACTAGCCACTGAGACAACCG 59.396 55.000 0.00 0.00 0.00 4.44
778 1497 1.618837 TCACTAGCCACTGAGACAACC 59.381 52.381 0.00 0.00 0.00 3.77
779 1498 3.060602 GTTCACTAGCCACTGAGACAAC 58.939 50.000 0.00 0.00 0.00 3.32
780 1499 2.288213 CGTTCACTAGCCACTGAGACAA 60.288 50.000 0.00 0.00 0.00 3.18
781 1500 1.269723 CGTTCACTAGCCACTGAGACA 59.730 52.381 0.00 0.00 0.00 3.41
782 1501 1.269998 ACGTTCACTAGCCACTGAGAC 59.730 52.381 0.00 0.00 0.00 3.36
783 1502 1.269723 CACGTTCACTAGCCACTGAGA 59.730 52.381 0.00 0.00 0.00 3.27
784 1503 1.670087 CCACGTTCACTAGCCACTGAG 60.670 57.143 0.00 0.00 0.00 3.35
785 1504 0.317160 CCACGTTCACTAGCCACTGA 59.683 55.000 0.00 0.00 0.00 3.41
786 1505 1.291877 GCCACGTTCACTAGCCACTG 61.292 60.000 0.00 0.00 0.00 3.66
787 1506 1.004918 GCCACGTTCACTAGCCACT 60.005 57.895 0.00 0.00 0.00 4.00
788 1507 2.033194 GGCCACGTTCACTAGCCAC 61.033 63.158 0.00 0.00 43.32 5.01
789 1508 2.345991 GGCCACGTTCACTAGCCA 59.654 61.111 0.00 0.00 43.32 4.75
790 1509 2.436115 GGGCCACGTTCACTAGCC 60.436 66.667 4.39 0.00 43.09 3.93
791 1510 2.436115 GGGGCCACGTTCACTAGC 60.436 66.667 4.39 0.00 0.00 3.42
792 1511 1.375523 GTGGGGCCACGTTCACTAG 60.376 63.158 4.39 0.00 37.19 2.57
793 1512 2.745037 GTGGGGCCACGTTCACTA 59.255 61.111 4.39 0.00 37.19 2.74
801 1520 1.678970 GATTGACAGGTGGGGCCAC 60.679 63.158 4.39 0.00 45.49 5.01
802 1521 2.763215 GATTGACAGGTGGGGCCA 59.237 61.111 4.39 0.00 40.61 5.36
803 1522 2.043953 GGATTGACAGGTGGGGCC 60.044 66.667 0.00 0.00 37.58 5.80
804 1523 2.043953 GGGATTGACAGGTGGGGC 60.044 66.667 0.00 0.00 0.00 5.80
805 1524 1.304282 CTGGGATTGACAGGTGGGG 59.696 63.158 0.00 0.00 32.38 4.96
811 1530 1.304282 CCACCCCTGGGATTGACAG 59.696 63.158 16.20 0.00 38.96 3.51
812 1531 3.506808 CCACCCCTGGGATTGACA 58.493 61.111 16.20 0.00 38.96 3.58
820 1539 2.364186 GATTTGCCCCACCCCTGG 60.364 66.667 0.00 0.00 37.29 4.45
821 1540 1.002017 ATGATTTGCCCCACCCCTG 59.998 57.895 0.00 0.00 0.00 4.45
822 1541 1.311059 GATGATTTGCCCCACCCCT 59.689 57.895 0.00 0.00 0.00 4.79
823 1542 0.617249 TTGATGATTTGCCCCACCCC 60.617 55.000 0.00 0.00 0.00 4.95
824 1543 1.207811 CTTTGATGATTTGCCCCACCC 59.792 52.381 0.00 0.00 0.00 4.61
825 1544 1.901833 ACTTTGATGATTTGCCCCACC 59.098 47.619 0.00 0.00 0.00 4.61
826 1545 3.683365 AACTTTGATGATTTGCCCCAC 57.317 42.857 0.00 0.00 0.00 4.61
827 1546 4.671831 TCTAACTTTGATGATTTGCCCCA 58.328 39.130 0.00 0.00 0.00 4.96
828 1547 5.185828 ACTTCTAACTTTGATGATTTGCCCC 59.814 40.000 0.00 0.00 0.00 5.80
829 1548 6.272822 ACTTCTAACTTTGATGATTTGCCC 57.727 37.500 0.00 0.00 0.00 5.36
830 1549 9.346725 CTTTACTTCTAACTTTGATGATTTGCC 57.653 33.333 0.00 0.00 0.00 4.52
831 1550 9.899226 ACTTTACTTCTAACTTTGATGATTTGC 57.101 29.630 0.00 0.00 0.00 3.68
835 1554 9.003658 CCACACTTTACTTCTAACTTTGATGAT 57.996 33.333 0.00 0.00 0.00 2.45
836 1555 7.444183 CCCACACTTTACTTCTAACTTTGATGA 59.556 37.037 0.00 0.00 0.00 2.92
837 1556 7.228706 ACCCACACTTTACTTCTAACTTTGATG 59.771 37.037 0.00 0.00 0.00 3.07
838 1557 7.287810 ACCCACACTTTACTTCTAACTTTGAT 58.712 34.615 0.00 0.00 0.00 2.57
839 1558 6.655930 ACCCACACTTTACTTCTAACTTTGA 58.344 36.000 0.00 0.00 0.00 2.69
840 1559 6.937436 ACCCACACTTTACTTCTAACTTTG 57.063 37.500 0.00 0.00 0.00 2.77
841 1560 9.636789 ATTAACCCACACTTTACTTCTAACTTT 57.363 29.630 0.00 0.00 0.00 2.66
845 1564 9.590451 CGATATTAACCCACACTTTACTTCTAA 57.410 33.333 0.00 0.00 0.00 2.10
846 1565 8.970020 TCGATATTAACCCACACTTTACTTCTA 58.030 33.333 0.00 0.00 0.00 2.10
847 1566 7.844009 TCGATATTAACCCACACTTTACTTCT 58.156 34.615 0.00 0.00 0.00 2.85
848 1567 8.483307 TTCGATATTAACCCACACTTTACTTC 57.517 34.615 0.00 0.00 0.00 3.01
849 1568 9.457436 AATTCGATATTAACCCACACTTTACTT 57.543 29.630 0.00 0.00 0.00 2.24
850 1569 9.457436 AAATTCGATATTAACCCACACTTTACT 57.543 29.630 0.00 0.00 0.00 2.24
851 1570 9.712359 GAAATTCGATATTAACCCACACTTTAC 57.288 33.333 0.00 0.00 0.00 2.01
852 1571 9.675464 AGAAATTCGATATTAACCCACACTTTA 57.325 29.630 0.00 0.00 0.00 1.85
853 1572 8.575649 AGAAATTCGATATTAACCCACACTTT 57.424 30.769 0.00 0.00 0.00 2.66
854 1573 8.047310 AGAGAAATTCGATATTAACCCACACTT 58.953 33.333 0.00 0.00 0.00 3.16
855 1574 7.495934 CAGAGAAATTCGATATTAACCCACACT 59.504 37.037 0.00 0.00 0.00 3.55
856 1575 7.630924 CAGAGAAATTCGATATTAACCCACAC 58.369 38.462 0.00 0.00 0.00 3.82
857 1576 6.260050 GCAGAGAAATTCGATATTAACCCACA 59.740 38.462 0.00 0.00 0.00 4.17
858 1577 6.483640 AGCAGAGAAATTCGATATTAACCCAC 59.516 38.462 0.00 0.00 0.00 4.61
859 1578 6.591935 AGCAGAGAAATTCGATATTAACCCA 58.408 36.000 0.00 0.00 0.00 4.51
860 1579 6.931840 AGAGCAGAGAAATTCGATATTAACCC 59.068 38.462 0.00 0.00 0.00 4.11
861 1580 7.439655 ACAGAGCAGAGAAATTCGATATTAACC 59.560 37.037 0.00 0.00 0.00 2.85
862 1581 8.359060 ACAGAGCAGAGAAATTCGATATTAAC 57.641 34.615 0.00 0.00 0.00 2.01
863 1582 7.653713 GGACAGAGCAGAGAAATTCGATATTAA 59.346 37.037 0.00 0.00 0.00 1.40
864 1583 7.148641 GGACAGAGCAGAGAAATTCGATATTA 58.851 38.462 0.00 0.00 0.00 0.98
865 1584 5.988561 GGACAGAGCAGAGAAATTCGATATT 59.011 40.000 0.00 0.00 0.00 1.28
866 1585 5.069648 TGGACAGAGCAGAGAAATTCGATAT 59.930 40.000 0.00 0.00 0.00 1.63
867 1586 4.402474 TGGACAGAGCAGAGAAATTCGATA 59.598 41.667 0.00 0.00 0.00 2.92
868 1587 3.196469 TGGACAGAGCAGAGAAATTCGAT 59.804 43.478 0.00 0.00 0.00 3.59
869 1588 2.562738 TGGACAGAGCAGAGAAATTCGA 59.437 45.455 0.00 0.00 0.00 3.71
870 1589 2.670414 GTGGACAGAGCAGAGAAATTCG 59.330 50.000 0.00 0.00 0.00 3.34
871 1590 2.670414 CGTGGACAGAGCAGAGAAATTC 59.330 50.000 0.00 0.00 0.00 2.17
872 1591 2.693069 CGTGGACAGAGCAGAGAAATT 58.307 47.619 0.00 0.00 0.00 1.82
873 1592 1.674221 GCGTGGACAGAGCAGAGAAAT 60.674 52.381 0.00 0.00 0.00 2.17
874 1593 0.319900 GCGTGGACAGAGCAGAGAAA 60.320 55.000 0.00 0.00 0.00 2.52
875 1594 1.290324 GCGTGGACAGAGCAGAGAA 59.710 57.895 0.00 0.00 0.00 2.87
876 1595 2.640302 GGCGTGGACAGAGCAGAGA 61.640 63.158 0.00 0.00 0.00 3.10
877 1596 2.125753 GGCGTGGACAGAGCAGAG 60.126 66.667 0.00 0.00 0.00 3.35
878 1597 4.056125 CGGCGTGGACAGAGCAGA 62.056 66.667 0.00 0.00 0.00 4.26
912 1631 1.521616 CTGAGGAGGAGCTTCTGCC 59.478 63.158 10.40 6.16 40.80 4.85
970 1689 0.030908 CCTAGAATCGTCAGTCCGGC 59.969 60.000 0.00 0.00 0.00 6.13
975 1694 2.356382 CGAAGCTCCTAGAATCGTCAGT 59.644 50.000 0.00 0.00 0.00 3.41
1155 1874 0.370273 CATCGTAACAGCTGGCGAAC 59.630 55.000 25.59 14.37 36.92 3.95
1221 1940 6.466812 CCCAAAATTCCTAACTTGCTCAATT 58.533 36.000 0.00 0.00 0.00 2.32
1225 1944 3.832490 ACCCCAAAATTCCTAACTTGCTC 59.168 43.478 0.00 0.00 0.00 4.26
1253 1972 5.010012 CCCACAAAACAGAACAAAGCTCTAT 59.990 40.000 0.00 0.00 0.00 1.98
1363 2094 3.181434 ACAAAGATGGCTTGGACCTTACA 60.181 43.478 0.00 0.00 33.79 2.41
1365 2096 3.806949 ACAAAGATGGCTTGGACCTTA 57.193 42.857 0.00 0.00 33.79 2.69
1389 2120 2.484770 CCGACACAATAATCACCCGGAT 60.485 50.000 0.73 0.00 38.10 4.18
1394 2125 3.261981 AGGACCGACACAATAATCACC 57.738 47.619 0.00 0.00 0.00 4.02
1421 2152 4.853924 AACCCAAACAGTAGCAAAGATG 57.146 40.909 0.00 0.00 0.00 2.90
1434 2165 1.068588 GTTGAGCCTCCAAACCCAAAC 59.931 52.381 0.00 0.00 0.00 2.93
1468 2199 6.317642 TCATGCAAAACAAGGTTATATACGCT 59.682 34.615 0.00 0.00 0.00 5.07
1469 2200 6.491394 TCATGCAAAACAAGGTTATATACGC 58.509 36.000 0.00 0.00 0.00 4.42
1470 2201 8.394877 TCTTCATGCAAAACAAGGTTATATACG 58.605 33.333 0.00 0.00 0.00 3.06
1474 2205 9.995003 AAATTCTTCATGCAAAACAAGGTTATA 57.005 25.926 0.00 0.00 0.00 0.98
1475 2206 8.776470 CAAATTCTTCATGCAAAACAAGGTTAT 58.224 29.630 0.00 0.00 0.00 1.89
1476 2207 7.254727 GCAAATTCTTCATGCAAAACAAGGTTA 60.255 33.333 0.00 0.00 39.81 2.85
1478 2209 5.007921 GCAAATTCTTCATGCAAAACAAGGT 59.992 36.000 0.00 0.00 39.81 3.50
1479 2210 5.237779 AGCAAATTCTTCATGCAAAACAAGG 59.762 36.000 0.00 0.00 42.45 3.61
1512 2243 0.040514 TCAATTGCAAGCGTTCCACG 60.041 50.000 4.94 0.00 45.88 4.94
1555 2286 3.081061 TGCGTTGCATAAGATTTGGACT 58.919 40.909 0.00 0.00 31.71 3.85
1922 2653 2.492484 CGTCTGGACTATGGGTATAGCC 59.508 54.545 14.30 14.30 39.96 3.93
1923 2654 3.155501 ACGTCTGGACTATGGGTATAGC 58.844 50.000 0.00 0.00 39.96 2.97
1924 2655 5.301045 TGAAACGTCTGGACTATGGGTATAG 59.699 44.000 0.00 0.00 41.68 1.31
1925 2656 5.202765 TGAAACGTCTGGACTATGGGTATA 58.797 41.667 0.00 0.00 0.00 1.47
1926 2657 4.028131 TGAAACGTCTGGACTATGGGTAT 58.972 43.478 0.00 0.00 0.00 2.73
1927 2658 3.433343 TGAAACGTCTGGACTATGGGTA 58.567 45.455 0.00 0.00 0.00 3.69
1928 2659 2.233922 CTGAAACGTCTGGACTATGGGT 59.766 50.000 0.00 0.00 0.00 4.51
1929 2660 2.893637 CTGAAACGTCTGGACTATGGG 58.106 52.381 0.00 0.00 0.00 4.00
1930 2661 2.093973 AGCTGAAACGTCTGGACTATGG 60.094 50.000 0.00 0.00 0.00 2.74
1931 2662 2.926200 CAGCTGAAACGTCTGGACTATG 59.074 50.000 8.42 0.00 0.00 2.23
1932 2663 2.826128 TCAGCTGAAACGTCTGGACTAT 59.174 45.455 15.67 0.00 0.00 2.12
1933 2664 2.235891 TCAGCTGAAACGTCTGGACTA 58.764 47.619 15.67 0.00 0.00 2.59
1934 2665 1.040646 TCAGCTGAAACGTCTGGACT 58.959 50.000 15.67 0.00 0.00 3.85
1935 2666 1.865865 TTCAGCTGAAACGTCTGGAC 58.134 50.000 26.61 0.00 0.00 4.02
1936 2667 2.224281 ACATTCAGCTGAAACGTCTGGA 60.224 45.455 31.55 7.35 37.61 3.86
1937 2668 2.146342 ACATTCAGCTGAAACGTCTGG 58.854 47.619 31.55 16.72 37.61 3.86
1938 2669 3.248363 TGAACATTCAGCTGAAACGTCTG 59.752 43.478 31.55 25.23 37.61 3.51
1939 2670 3.466836 TGAACATTCAGCTGAAACGTCT 58.533 40.909 31.55 19.79 37.61 4.18
1940 2671 3.878086 TGAACATTCAGCTGAAACGTC 57.122 42.857 31.55 25.29 37.61 4.34
1941 2672 3.814842 TCATGAACATTCAGCTGAAACGT 59.185 39.130 31.55 26.44 41.08 3.99
1942 2673 4.408993 TCATGAACATTCAGCTGAAACG 57.591 40.909 31.55 25.83 41.08 3.60
1943 2674 7.061905 CAGATTTCATGAACATTCAGCTGAAAC 59.938 37.037 31.55 21.56 43.33 2.78
1944 2675 7.040271 TCAGATTTCATGAACATTCAGCTGAAA 60.040 33.333 31.55 16.23 44.01 2.69
1945 2676 6.431852 TCAGATTTCATGAACATTCAGCTGAA 59.568 34.615 30.23 30.23 41.08 3.02
1946 2677 5.941647 TCAGATTTCATGAACATTCAGCTGA 59.058 36.000 13.74 13.74 41.08 4.26
1947 2678 6.127980 ACTCAGATTTCATGAACATTCAGCTG 60.128 38.462 7.89 11.47 41.08 4.24
1948 2679 5.944599 ACTCAGATTTCATGAACATTCAGCT 59.055 36.000 7.89 0.00 41.08 4.24
1949 2680 6.192234 ACTCAGATTTCATGAACATTCAGC 57.808 37.500 7.89 0.00 41.08 4.26
1952 2683 9.512435 CCAATAACTCAGATTTCATGAACATTC 57.488 33.333 7.89 5.92 0.00 2.67
1953 2684 7.977853 GCCAATAACTCAGATTTCATGAACATT 59.022 33.333 7.89 0.00 0.00 2.71
1954 2685 7.123098 TGCCAATAACTCAGATTTCATGAACAT 59.877 33.333 7.89 5.30 0.00 2.71
1955 2686 6.433716 TGCCAATAACTCAGATTTCATGAACA 59.566 34.615 7.89 0.11 0.00 3.18
1956 2687 6.855836 TGCCAATAACTCAGATTTCATGAAC 58.144 36.000 7.89 0.00 0.00 3.18
1957 2688 7.465353 TTGCCAATAACTCAGATTTCATGAA 57.535 32.000 3.38 3.38 0.00 2.57
1958 2689 7.485810 CATTGCCAATAACTCAGATTTCATGA 58.514 34.615 0.00 0.00 0.00 3.07
1959 2690 6.200286 GCATTGCCAATAACTCAGATTTCATG 59.800 38.462 0.00 0.00 0.00 3.07
1960 2691 6.278363 GCATTGCCAATAACTCAGATTTCAT 58.722 36.000 0.00 0.00 0.00 2.57
1961 2692 5.653507 GCATTGCCAATAACTCAGATTTCA 58.346 37.500 0.00 0.00 0.00 2.69
1977 2708 1.755959 TGGTGACAATATGGCATTGCC 59.244 47.619 21.12 21.12 37.93 4.52
1991 2722 3.243569 CCAGATCGAGGAAGTATGGTGAC 60.244 52.174 1.35 0.00 0.00 3.67
1992 2723 2.959030 CCAGATCGAGGAAGTATGGTGA 59.041 50.000 1.35 0.00 0.00 4.02
1993 2724 2.546795 GCCAGATCGAGGAAGTATGGTG 60.547 54.545 10.95 0.00 0.00 4.17
1994 2725 1.689273 GCCAGATCGAGGAAGTATGGT 59.311 52.381 10.95 0.00 0.00 3.55
1995 2726 1.001406 GGCCAGATCGAGGAAGTATGG 59.999 57.143 10.95 0.00 0.00 2.74
1996 2727 1.688735 TGGCCAGATCGAGGAAGTATG 59.311 52.381 0.00 0.00 0.00 2.39
1997 2728 1.967066 CTGGCCAGATCGAGGAAGTAT 59.033 52.381 29.88 0.00 0.00 2.12
1998 2729 1.063942 TCTGGCCAGATCGAGGAAGTA 60.064 52.381 32.00 4.64 31.41 2.24
1999 2730 0.324738 TCTGGCCAGATCGAGGAAGT 60.325 55.000 32.00 0.00 31.41 3.01
2000 2731 0.103937 GTCTGGCCAGATCGAGGAAG 59.896 60.000 37.07 6.86 39.97 3.46
2001 2732 0.324738 AGTCTGGCCAGATCGAGGAA 60.325 55.000 37.07 10.80 39.97 3.36
2002 2733 0.551396 TAGTCTGGCCAGATCGAGGA 59.449 55.000 37.07 16.37 39.97 3.71
2003 2734 0.958091 CTAGTCTGGCCAGATCGAGG 59.042 60.000 37.07 20.84 39.97 4.63
2004 2735 0.313672 GCTAGTCTGGCCAGATCGAG 59.686 60.000 37.07 30.35 39.97 4.04
2005 2736 0.395724 TGCTAGTCTGGCCAGATCGA 60.396 55.000 37.07 23.63 39.97 3.59
2006 2737 0.461548 TTGCTAGTCTGGCCAGATCG 59.538 55.000 37.07 26.64 39.97 3.69
2007 2738 2.926778 ATTGCTAGTCTGGCCAGATC 57.073 50.000 37.07 27.90 39.97 2.75
2008 2739 4.989875 AATATTGCTAGTCTGGCCAGAT 57.010 40.909 37.07 26.09 39.97 2.90
2009 2740 4.778213 AAATATTGCTAGTCTGGCCAGA 57.222 40.909 32.00 32.00 34.56 3.86
2010 2741 5.841957 AAAAATATTGCTAGTCTGGCCAG 57.158 39.130 27.87 27.87 0.00 4.85
2011 2742 6.239008 GCATAAAAATATTGCTAGTCTGGCCA 60.239 38.462 4.71 4.71 33.61 5.36
2012 2743 6.152379 GCATAAAAATATTGCTAGTCTGGCC 58.848 40.000 5.65 0.00 33.61 5.36
2013 2744 6.015940 AGGCATAAAAATATTGCTAGTCTGGC 60.016 38.462 0.32 0.32 36.62 4.85
2014 2745 7.516198 AGGCATAAAAATATTGCTAGTCTGG 57.484 36.000 0.00 0.00 36.62 3.86
2015 2746 8.078596 GGAAGGCATAAAAATATTGCTAGTCTG 58.921 37.037 0.00 0.00 36.62 3.51
2016 2747 7.779798 TGGAAGGCATAAAAATATTGCTAGTCT 59.220 33.333 0.00 0.00 36.62 3.24
2017 2748 7.940850 TGGAAGGCATAAAAATATTGCTAGTC 58.059 34.615 0.00 0.00 36.62 2.59
2018 2749 7.896383 TGGAAGGCATAAAAATATTGCTAGT 57.104 32.000 0.00 0.00 36.62 2.57
2019 2750 8.579006 TCATGGAAGGCATAAAAATATTGCTAG 58.421 33.333 0.00 0.00 36.62 3.42
2027 2758 9.387257 GAAAGAATTCATGGAAGGCATAAAAAT 57.613 29.630 8.44 0.00 35.54 1.82
2090 2821 6.878389 TCCAGACAAAATTTTCAGCAAAGTTT 59.122 30.769 0.00 0.00 42.09 2.66
2095 2826 5.850557 TCTCCAGACAAAATTTTCAGCAA 57.149 34.783 0.00 0.00 0.00 3.91
2152 2883 2.295253 AGGCTACGACATGCTTACAC 57.705 50.000 0.00 0.00 0.00 2.90
2237 2968 4.019321 TCCAAATTAGTCAGACCAGGGAAG 60.019 45.833 0.00 0.00 0.00 3.46
2340 3075 9.762933 CCCGGAATAAAACATTCATAATTTCAT 57.237 29.630 0.73 0.00 0.00 2.57
2349 3084 3.766591 ACATGCCCGGAATAAAACATTCA 59.233 39.130 0.73 0.00 0.00 2.57
2352 3087 3.130340 GTGACATGCCCGGAATAAAACAT 59.870 43.478 0.73 0.00 0.00 2.71
2353 3088 2.490115 GTGACATGCCCGGAATAAAACA 59.510 45.455 0.73 0.00 0.00 2.83
2371 3108 5.125356 ACATGAGTGACATTTCTTGTGTGA 58.875 37.500 0.00 0.00 39.18 3.58
2381 3118 6.769822 ACAGAGAGAAAAACATGAGTGACATT 59.230 34.615 0.00 0.00 37.07 2.71
2386 3123 5.049818 GGACACAGAGAGAAAAACATGAGTG 60.050 44.000 0.00 0.00 0.00 3.51
2387 3124 5.059833 GGACACAGAGAGAAAAACATGAGT 58.940 41.667 0.00 0.00 0.00 3.41
2463 3201 8.915036 CCTTAGAGAAGCTCTAACAGGTTATAA 58.085 37.037 11.70 0.00 44.85 0.98
2517 3255 3.060866 GACGTCTGGTCAGCCCTT 58.939 61.111 8.70 0.00 45.36 3.95
2690 3428 6.047231 GTGTCAAGTTAACAGTCCAGTTAGT 58.953 40.000 8.61 0.00 35.57 2.24
2727 3468 9.411189 TGGTATAAAGTTAAGTTGGTCAAGTTT 57.589 29.630 8.79 0.00 35.70 2.66
2809 3561 0.251474 AAGGATGCAGCAAAGGAGCA 60.251 50.000 3.51 0.00 43.14 4.26
3034 3790 3.509442 TCCTTTCCCTTGAACAATGCAT 58.491 40.909 0.00 0.00 0.00 3.96
3231 3996 3.138304 CTCTTGTTCCCGAAACATGTCA 58.862 45.455 0.00 0.00 46.94 3.58
3470 4236 2.161855 TGTGCTGAAAACTGCATAGGG 58.838 47.619 0.00 0.00 0.00 3.53
3512 4278 5.934935 TTGAGGAACGAAAATAACAGACC 57.065 39.130 0.00 0.00 0.00 3.85
3653 4426 5.646692 TTTGGATCAGAGGGGGTAATAAG 57.353 43.478 0.00 0.00 0.00 1.73
3660 4463 4.210331 CACTTATTTTGGATCAGAGGGGG 58.790 47.826 0.00 0.00 0.00 5.40
3661 4464 4.860022 ACACTTATTTTGGATCAGAGGGG 58.140 43.478 0.00 0.00 0.00 4.79
3662 4465 4.572389 CGACACTTATTTTGGATCAGAGGG 59.428 45.833 0.00 0.00 0.00 4.30
3663 4466 4.034510 GCGACACTTATTTTGGATCAGAGG 59.965 45.833 0.00 0.00 0.00 3.69
3664 4467 4.631377 TGCGACACTTATTTTGGATCAGAG 59.369 41.667 0.00 0.00 0.00 3.35
3666 4469 4.728882 GCTGCGACACTTATTTTGGATCAG 60.729 45.833 0.00 0.00 0.00 2.90
3667 4470 3.126858 GCTGCGACACTTATTTTGGATCA 59.873 43.478 0.00 0.00 0.00 2.92
3668 4471 3.375299 AGCTGCGACACTTATTTTGGATC 59.625 43.478 0.00 0.00 0.00 3.36
3669 4472 3.347216 AGCTGCGACACTTATTTTGGAT 58.653 40.909 0.00 0.00 0.00 3.41
3672 4475 4.536065 TCAAAGCTGCGACACTTATTTTG 58.464 39.130 0.00 0.00 0.00 2.44
3673 4476 4.829064 TCAAAGCTGCGACACTTATTTT 57.171 36.364 0.00 0.00 0.00 1.82
3674 4477 4.275936 AGTTCAAAGCTGCGACACTTATTT 59.724 37.500 0.00 0.00 0.00 1.40
3677 4480 2.833794 AGTTCAAAGCTGCGACACTTA 58.166 42.857 0.00 0.00 0.00 2.24
3678 4481 1.668419 AGTTCAAAGCTGCGACACTT 58.332 45.000 0.00 0.00 0.00 3.16
3679 4482 2.526304 TAGTTCAAAGCTGCGACACT 57.474 45.000 0.00 0.00 0.00 3.55
3680 4483 2.096218 CCTTAGTTCAAAGCTGCGACAC 60.096 50.000 0.00 0.00 0.00 3.67
3682 4485 2.143925 ACCTTAGTTCAAAGCTGCGAC 58.856 47.619 0.00 0.00 0.00 5.19
3683 4486 2.543777 ACCTTAGTTCAAAGCTGCGA 57.456 45.000 0.00 0.00 0.00 5.10
3684 4487 3.746492 ACTAACCTTAGTTCAAAGCTGCG 59.254 43.478 0.00 0.00 40.96 5.18
3685 4488 6.819146 AGATACTAACCTTAGTTCAAAGCTGC 59.181 38.462 3.08 0.00 40.96 5.25
3686 4489 8.660373 CAAGATACTAACCTTAGTTCAAAGCTG 58.340 37.037 3.08 0.00 40.96 4.24
3687 4490 8.594550 TCAAGATACTAACCTTAGTTCAAAGCT 58.405 33.333 3.08 0.00 40.96 3.74
3688 4491 8.773404 TCAAGATACTAACCTTAGTTCAAAGC 57.227 34.615 3.08 0.00 40.96 3.51
3698 4501 9.588096 AAGGAAACAATTCAAGATACTAACCTT 57.412 29.630 0.00 0.00 37.29 3.50
3704 4507 9.660180 GAGTCTAAGGAAACAATTCAAGATACT 57.340 33.333 0.00 0.00 37.29 2.12
3705 4508 9.436957 TGAGTCTAAGGAAACAATTCAAGATAC 57.563 33.333 0.00 0.00 37.29 2.24
3758 4561 3.181462 TGTCAGATCACAGTGAAGTGCTT 60.181 43.478 7.50 0.00 39.35 3.91
3881 4684 1.912043 AGCCTACAAGAGTGGCAATCT 59.088 47.619 12.35 12.35 41.46 2.40
3882 4685 2.409948 AGCCTACAAGAGTGGCAATC 57.590 50.000 6.88 6.88 41.46 2.67
3883 4686 2.224867 ACAAGCCTACAAGAGTGGCAAT 60.225 45.455 6.01 0.00 41.46 3.56
3884 4687 1.142870 ACAAGCCTACAAGAGTGGCAA 59.857 47.619 6.01 0.00 41.46 4.52
3888 4709 2.221169 TGCAACAAGCCTACAAGAGTG 58.779 47.619 0.00 0.00 44.83 3.51
3936 4757 3.807071 GGCAGGTACAACAACCAAATTTG 59.193 43.478 11.40 11.40 42.40 2.32
4047 4872 6.861055 CGCGCCTATTATTTTCAACCAAATAT 59.139 34.615 0.00 0.00 30.40 1.28
4068 4894 4.224715 TCTACATAGGCATATATCGCGC 57.775 45.455 0.00 0.00 0.00 6.86
4069 4895 6.024664 GCTATCTACATAGGCATATATCGCG 58.975 44.000 0.00 0.00 33.61 5.87
4085 4911 7.653767 AAATACCGCTGTAAATGCTATCTAC 57.346 36.000 0.00 0.00 0.00 2.59
4103 4929 9.463443 GAGTTCAATATTGCCATTGTAAATACC 57.537 33.333 10.76 0.00 37.23 2.73
4348 5174 1.378762 GCTCACCCTGCCACCTTTA 59.621 57.895 0.00 0.00 0.00 1.85
4468 5307 4.224433 CACAACAACAAGCTCTGCATAAG 58.776 43.478 0.00 0.00 0.00 1.73
4513 5352 9.716507 ATGAAAATGAACGATTTTATCTTACGG 57.283 29.630 0.00 0.00 43.12 4.02
4676 5515 9.716531 TGTTTTGTTCAAATGCAAATGGATATA 57.283 25.926 0.00 0.00 34.99 0.86
4733 5572 4.684484 AACACTAAGTCGGAAGGTTTCT 57.316 40.909 0.00 0.00 0.00 2.52
5016 5855 5.724854 AGGTAGCAAGGGATCTTACAACTAA 59.275 40.000 0.00 0.00 0.00 2.24
5033 5872 6.294361 ACACAATATACTCAACAGGTAGCA 57.706 37.500 0.00 0.00 0.00 3.49
5171 6013 6.408092 CCATGTAGAAGGACAAGTTATGGCTA 60.408 42.308 0.00 0.00 37.17 3.93
5540 6665 2.595095 GATGAACGGGATGGGGCA 59.405 61.111 0.00 0.00 0.00 5.36
5547 6672 2.622903 GATGACGGCGATGAACGGGA 62.623 60.000 16.62 0.00 42.83 5.14
5552 6677 0.532640 CCCATGATGACGGCGATGAA 60.533 55.000 16.62 0.00 0.00 2.57
5562 6687 0.765903 GGAGGAGGAGCCCATGATGA 60.766 60.000 0.00 0.00 37.37 2.92
5570 6695 0.260523 ACTGTAGAGGAGGAGGAGCC 59.739 60.000 0.00 0.00 0.00 4.70
5605 6730 4.608774 AGGGTGACGTCGGGACCA 62.609 66.667 21.23 0.00 0.00 4.02
5635 6760 1.067142 GGGACGCGCTCATGGATATTA 60.067 52.381 5.73 0.00 0.00 0.98
5638 6763 2.734591 GGGACGCGCTCATGGATA 59.265 61.111 5.73 0.00 0.00 2.59
5940 7065 4.441634 CGTAAAACTCACCATAGAGGAGGG 60.442 50.000 0.00 0.00 41.22 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.