Multiple sequence alignment - TraesCS5B01G185000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G185000 chr5B 100.000 4017 0 0 1 4017 336247825 336243809 0.000000e+00 7419.0
1 TraesCS5B01G185000 chr5D 93.700 3270 145 22 782 4011 294640087 294636839 0.000000e+00 4841.0
2 TraesCS5B01G185000 chr5D 95.349 43 1 1 3119 3161 294637710 294637751 2.590000e-07 67.6
3 TraesCS5B01G185000 chr5D 90.698 43 4 0 3124 3166 546920402 546920360 1.560000e-04 58.4
4 TraesCS5B01G185000 chr5A 94.311 3129 130 10 921 4011 387929742 387926624 0.000000e+00 4748.0
5 TraesCS5B01G185000 chr5A 95.349 43 1 1 3119 3161 387927500 387927541 2.590000e-07 67.6
6 TraesCS5B01G185000 chr1B 95.066 527 16 1 160 676 561632154 561632680 0.000000e+00 821.0
7 TraesCS5B01G185000 chr1B 93.006 529 26 6 159 676 74826821 74827349 0.000000e+00 761.0
8 TraesCS5B01G185000 chr1B 80.322 559 71 25 160 683 182752290 182751736 1.750000e-103 387.0
9 TraesCS5B01G185000 chr1B 79.855 551 75 23 160 676 162116925 162117473 1.760000e-98 370.0
10 TraesCS5B01G185000 chr1B 95.238 42 2 0 3135 3176 15881566 15881525 2.590000e-07 67.6
11 TraesCS5B01G185000 chr6B 94.129 528 21 1 160 677 375789474 375788947 0.000000e+00 795.0
12 TraesCS5B01G185000 chr6B 79.606 559 72 25 160 681 11681465 11680912 2.950000e-96 363.0
13 TraesCS5B01G185000 chr6B 97.674 43 1 0 3124 3166 139885258 139885300 1.550000e-09 75.0
14 TraesCS5B01G185000 chr6B 92.453 53 1 3 3109 3161 171460730 171460681 5.570000e-09 73.1
15 TraesCS5B01G185000 chr2B 94.118 527 21 5 160 676 646065946 646065420 0.000000e+00 793.0
16 TraesCS5B01G185000 chr2B 92.669 532 28 4 157 677 790772819 790772288 0.000000e+00 756.0
17 TraesCS5B01G185000 chr2B 80.144 554 68 24 159 675 869207 868659 3.790000e-100 375.0
18 TraesCS5B01G185000 chr2B 96.364 55 1 1 2 55 603432716 603432662 5.530000e-14 89.8
19 TraesCS5B01G185000 chr2B 93.878 49 2 1 3118 3166 697510055 697510102 5.570000e-09 73.1
20 TraesCS5B01G185000 chr4D 93.573 529 22 5 160 676 68859088 68858560 0.000000e+00 778.0
21 TraesCS5B01G185000 chr4B 93.182 528 25 6 160 676 632707871 632707344 0.000000e+00 765.0
22 TraesCS5B01G185000 chr3B 92.586 526 27 6 160 673 819652580 819653105 0.000000e+00 745.0
23 TraesCS5B01G185000 chr3B 80.254 552 71 25 160 676 160703351 160702803 8.150000e-102 381.0
24 TraesCS5B01G185000 chr3B 85.586 111 13 3 1 111 616257389 616257496 3.280000e-21 113.0
25 TraesCS5B01G185000 chr2D 91.205 523 39 5 160 676 114097191 114096670 0.000000e+00 704.0
26 TraesCS5B01G185000 chr2D 89.423 104 9 2 1 103 512927900 512927798 3.260000e-26 130.0
27 TraesCS5B01G185000 chr2D 93.023 43 2 1 3119 3161 579535293 579535334 1.210000e-05 62.1
28 TraesCS5B01G185000 chrUn 87.766 188 10 6 160 335 47552993 47552807 1.460000e-49 207.0
29 TraesCS5B01G185000 chr7B 86.772 189 12 6 160 336 710490655 710490468 8.810000e-47 198.0
30 TraesCS5B01G185000 chr7B 93.750 48 1 2 3128 3174 478482240 478482286 2.000000e-08 71.3
31 TraesCS5B01G185000 chr4A 92.000 75 6 0 2 76 679157151 679157077 5.490000e-19 106.0
32 TraesCS5B01G185000 chr7D 88.889 63 7 0 14 76 78621623 78621561 1.200000e-10 78.7
33 TraesCS5B01G185000 chr7D 93.878 49 3 0 3124 3172 165657903 165657855 1.550000e-09 75.0
34 TraesCS5B01G185000 chr6D 93.878 49 3 0 3118 3166 65053139 65053187 1.550000e-09 75.0
35 TraesCS5B01G185000 chr6D 95.455 44 1 1 3118 3161 89249181 89249139 7.200000e-08 69.4
36 TraesCS5B01G185000 chr1A 97.674 43 1 0 3124 3166 27361985 27362027 1.550000e-09 75.0
37 TraesCS5B01G185000 chr3D 93.750 48 2 1 3119 3166 504193879 504193925 2.000000e-08 71.3
38 TraesCS5B01G185000 chr3A 95.349 43 2 0 3124 3166 601333457 601333415 7.200000e-08 69.4
39 TraesCS5B01G185000 chr6A 97.500 40 0 1 3119 3158 107509375 107509337 2.590000e-07 67.6
40 TraesCS5B01G185000 chr1D 97.297 37 1 0 3125 3161 404066705 404066669 3.350000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G185000 chr5B 336243809 336247825 4016 True 7419 7419 100.000 1 4017 1 chr5B.!!$R1 4016
1 TraesCS5B01G185000 chr5D 294636839 294640087 3248 True 4841 4841 93.700 782 4011 1 chr5D.!!$R1 3229
2 TraesCS5B01G185000 chr5A 387926624 387929742 3118 True 4748 4748 94.311 921 4011 1 chr5A.!!$R1 3090
3 TraesCS5B01G185000 chr1B 561632154 561632680 526 False 821 821 95.066 160 676 1 chr1B.!!$F3 516
4 TraesCS5B01G185000 chr1B 74826821 74827349 528 False 761 761 93.006 159 676 1 chr1B.!!$F1 517
5 TraesCS5B01G185000 chr1B 182751736 182752290 554 True 387 387 80.322 160 683 1 chr1B.!!$R2 523
6 TraesCS5B01G185000 chr1B 162116925 162117473 548 False 370 370 79.855 160 676 1 chr1B.!!$F2 516
7 TraesCS5B01G185000 chr6B 375788947 375789474 527 True 795 795 94.129 160 677 1 chr6B.!!$R3 517
8 TraesCS5B01G185000 chr6B 11680912 11681465 553 True 363 363 79.606 160 681 1 chr6B.!!$R1 521
9 TraesCS5B01G185000 chr2B 646065420 646065946 526 True 793 793 94.118 160 676 1 chr2B.!!$R3 516
10 TraesCS5B01G185000 chr2B 790772288 790772819 531 True 756 756 92.669 157 677 1 chr2B.!!$R4 520
11 TraesCS5B01G185000 chr2B 868659 869207 548 True 375 375 80.144 159 675 1 chr2B.!!$R1 516
12 TraesCS5B01G185000 chr4D 68858560 68859088 528 True 778 778 93.573 160 676 1 chr4D.!!$R1 516
13 TraesCS5B01G185000 chr4B 632707344 632707871 527 True 765 765 93.182 160 676 1 chr4B.!!$R1 516
14 TraesCS5B01G185000 chr3B 819652580 819653105 525 False 745 745 92.586 160 673 1 chr3B.!!$F2 513
15 TraesCS5B01G185000 chr3B 160702803 160703351 548 True 381 381 80.254 160 676 1 chr3B.!!$R1 516
16 TraesCS5B01G185000 chr2D 114096670 114097191 521 True 704 704 91.205 160 676 1 chr2D.!!$R1 516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
688 727 0.030092 ACCCCTAGCTGGCCTGAATA 60.030 55.000 14.77 4.43 0.00 1.75 F
690 729 1.004044 CCCCTAGCTGGCCTGAATATG 59.996 57.143 14.77 2.70 0.00 1.78 F
1530 1570 0.667792 GGACTCGAGGTGCAGTGTTC 60.668 60.000 18.41 1.18 36.25 3.18 F
1559 1599 1.632589 GTGGGTGCCAGAAATCCTTT 58.367 50.000 0.00 0.00 32.34 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1530 1570 0.327924 TGGCACCCACCAGTTCATAG 59.672 55.000 0.00 0.0 33.75 2.23 R
2280 2329 1.202582 GCAAGAAGACTAGGCGACAGA 59.797 52.381 0.00 0.0 0.00 3.41 R
2689 2742 1.227823 TGTTGCAACCCTGAGACCG 60.228 57.895 26.14 0.0 0.00 4.79 R
3038 3091 4.201891 CCAGATCAATAAGCAGTCAAGCAC 60.202 45.833 0.00 0.0 36.85 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.998316 CAAAAAGGGGCTTGGTTTGA 57.002 45.000 0.00 0.00 32.18 2.69
20 21 2.837498 CAAAAAGGGGCTTGGTTTGAG 58.163 47.619 0.00 0.00 32.18 3.02
21 22 2.433970 CAAAAAGGGGCTTGGTTTGAGA 59.566 45.455 0.00 0.00 32.18 3.27
22 23 2.001076 AAAGGGGCTTGGTTTGAGAG 57.999 50.000 0.00 0.00 0.00 3.20
23 24 0.113190 AAGGGGCTTGGTTTGAGAGG 59.887 55.000 0.00 0.00 0.00 3.69
24 25 0.772124 AGGGGCTTGGTTTGAGAGGA 60.772 55.000 0.00 0.00 0.00 3.71
25 26 0.112412 GGGGCTTGGTTTGAGAGGAA 59.888 55.000 0.00 0.00 0.00 3.36
26 27 1.539157 GGGCTTGGTTTGAGAGGAAG 58.461 55.000 0.00 0.00 0.00 3.46
27 28 0.884514 GGCTTGGTTTGAGAGGAAGC 59.115 55.000 0.00 0.00 38.64 3.86
28 29 1.609208 GCTTGGTTTGAGAGGAAGCA 58.391 50.000 0.00 0.00 39.09 3.91
29 30 1.956477 GCTTGGTTTGAGAGGAAGCAA 59.044 47.619 0.00 0.00 40.82 3.91
30 31 2.362077 GCTTGGTTTGAGAGGAAGCAAA 59.638 45.455 0.00 0.00 41.99 3.68
31 32 3.181476 GCTTGGTTTGAGAGGAAGCAAAA 60.181 43.478 0.00 0.00 41.99 2.44
32 33 4.614946 CTTGGTTTGAGAGGAAGCAAAAG 58.385 43.478 0.00 0.00 41.99 2.27
33 34 3.631250 TGGTTTGAGAGGAAGCAAAAGT 58.369 40.909 0.00 0.00 35.95 2.66
34 35 4.023291 TGGTTTGAGAGGAAGCAAAAGTT 58.977 39.130 0.00 0.00 35.95 2.66
35 36 4.097892 TGGTTTGAGAGGAAGCAAAAGTTC 59.902 41.667 0.00 0.00 35.95 3.01
36 37 4.097892 GGTTTGAGAGGAAGCAAAAGTTCA 59.902 41.667 0.00 0.00 35.95 3.18
37 38 5.221322 GGTTTGAGAGGAAGCAAAAGTTCAT 60.221 40.000 0.00 0.00 35.95 2.57
38 39 5.443185 TTGAGAGGAAGCAAAAGTTCATG 57.557 39.130 0.00 0.00 0.00 3.07
39 40 4.717877 TGAGAGGAAGCAAAAGTTCATGA 58.282 39.130 0.00 0.00 0.00 3.07
40 41 5.319453 TGAGAGGAAGCAAAAGTTCATGAT 58.681 37.500 0.00 0.00 0.00 2.45
41 42 5.182570 TGAGAGGAAGCAAAAGTTCATGATG 59.817 40.000 0.00 0.00 0.00 3.07
42 43 4.461781 AGAGGAAGCAAAAGTTCATGATGG 59.538 41.667 0.00 0.00 0.00 3.51
43 44 4.410099 AGGAAGCAAAAGTTCATGATGGA 58.590 39.130 0.00 0.00 0.00 3.41
44 45 4.219288 AGGAAGCAAAAGTTCATGATGGAC 59.781 41.667 0.00 0.00 0.00 4.02
45 46 4.488879 GAAGCAAAAGTTCATGATGGACC 58.511 43.478 0.00 0.00 0.00 4.46
46 47 2.489329 AGCAAAAGTTCATGATGGACCG 59.511 45.455 0.00 0.00 0.00 4.79
47 48 2.487762 GCAAAAGTTCATGATGGACCGA 59.512 45.455 0.00 0.00 0.00 4.69
48 49 3.426695 GCAAAAGTTCATGATGGACCGAG 60.427 47.826 0.00 0.00 0.00 4.63
49 50 3.981071 AAAGTTCATGATGGACCGAGA 57.019 42.857 0.00 0.00 0.00 4.04
50 51 4.494091 AAAGTTCATGATGGACCGAGAT 57.506 40.909 0.00 0.00 0.00 2.75
51 52 3.465742 AGTTCATGATGGACCGAGATG 57.534 47.619 0.00 0.00 0.00 2.90
52 53 1.869767 GTTCATGATGGACCGAGATGC 59.130 52.381 0.00 0.00 0.00 3.91
53 54 0.032540 TCATGATGGACCGAGATGCG 59.967 55.000 0.00 0.00 40.47 4.73
54 55 0.249615 CATGATGGACCGAGATGCGT 60.250 55.000 0.00 0.00 38.67 5.24
55 56 1.000274 CATGATGGACCGAGATGCGTA 60.000 52.381 0.00 0.00 38.67 4.42
56 57 1.107945 TGATGGACCGAGATGCGTAA 58.892 50.000 0.00 0.00 38.67 3.18
57 58 1.686587 TGATGGACCGAGATGCGTAAT 59.313 47.619 0.00 0.00 38.67 1.89
58 59 2.288213 TGATGGACCGAGATGCGTAATC 60.288 50.000 0.00 0.00 38.67 1.75
59 60 1.107945 TGGACCGAGATGCGTAATCA 58.892 50.000 3.55 0.00 37.81 2.57
60 61 1.686587 TGGACCGAGATGCGTAATCAT 59.313 47.619 3.55 0.00 37.81 2.45
61 62 2.288213 TGGACCGAGATGCGTAATCATC 60.288 50.000 3.55 0.00 42.32 2.92
62 63 2.329379 GACCGAGATGCGTAATCATCC 58.671 52.381 0.63 0.00 42.84 3.51
63 64 1.964223 ACCGAGATGCGTAATCATCCT 59.036 47.619 0.63 0.00 42.84 3.24
64 65 3.154710 ACCGAGATGCGTAATCATCCTA 58.845 45.455 0.63 0.00 42.84 2.94
65 66 3.764434 ACCGAGATGCGTAATCATCCTAT 59.236 43.478 0.63 0.00 42.84 2.57
66 67 4.948004 ACCGAGATGCGTAATCATCCTATA 59.052 41.667 0.63 0.00 42.84 1.31
67 68 5.594725 ACCGAGATGCGTAATCATCCTATAT 59.405 40.000 0.63 0.00 42.84 0.86
68 69 6.096987 ACCGAGATGCGTAATCATCCTATATT 59.903 38.462 0.63 0.00 42.84 1.28
69 70 6.980978 CCGAGATGCGTAATCATCCTATATTT 59.019 38.462 0.63 0.00 42.84 1.40
70 71 7.043125 CCGAGATGCGTAATCATCCTATATTTG 60.043 40.741 0.63 0.00 42.84 2.32
71 72 7.489435 CGAGATGCGTAATCATCCTATATTTGT 59.511 37.037 0.63 0.00 42.84 2.83
72 73 9.155975 GAGATGCGTAATCATCCTATATTTGTT 57.844 33.333 0.63 0.00 42.84 2.83
73 74 9.507329 AGATGCGTAATCATCCTATATTTGTTT 57.493 29.630 0.63 0.00 42.84 2.83
74 75 9.546909 GATGCGTAATCATCCTATATTTGTTTG 57.453 33.333 0.00 0.00 37.47 2.93
75 76 8.445275 TGCGTAATCATCCTATATTTGTTTGT 57.555 30.769 0.00 0.00 0.00 2.83
76 77 8.898761 TGCGTAATCATCCTATATTTGTTTGTT 58.101 29.630 0.00 0.00 0.00 2.83
77 78 9.730420 GCGTAATCATCCTATATTTGTTTGTTT 57.270 29.630 0.00 0.00 0.00 2.83
86 87 9.921637 TCCTATATTTGTTTGTTTTCCATGAAC 57.078 29.630 0.00 0.00 0.00 3.18
87 88 9.927668 CCTATATTTGTTTGTTTTCCATGAACT 57.072 29.630 0.00 0.00 0.00 3.01
93 94 9.474920 TTTGTTTGTTTTCCATGAACTATGATC 57.525 29.630 0.00 0.00 39.21 2.92
94 95 7.304735 TGTTTGTTTTCCATGAACTATGATCG 58.695 34.615 0.00 0.00 39.21 3.69
95 96 7.174080 TGTTTGTTTTCCATGAACTATGATCGA 59.826 33.333 0.00 0.00 39.21 3.59
96 97 6.908870 TGTTTTCCATGAACTATGATCGAG 57.091 37.500 0.00 0.00 39.21 4.04
97 98 6.639563 TGTTTTCCATGAACTATGATCGAGA 58.360 36.000 0.00 0.00 39.21 4.04
98 99 7.275183 TGTTTTCCATGAACTATGATCGAGAT 58.725 34.615 0.00 0.00 39.21 2.75
99 100 7.225341 TGTTTTCCATGAACTATGATCGAGATG 59.775 37.037 0.00 0.00 39.21 2.90
100 101 4.814147 TCCATGAACTATGATCGAGATGC 58.186 43.478 0.00 0.00 39.21 3.91
101 102 4.281688 TCCATGAACTATGATCGAGATGCA 59.718 41.667 0.00 0.00 39.21 3.96
102 103 5.046807 TCCATGAACTATGATCGAGATGCAT 60.047 40.000 0.00 0.00 39.21 3.96
103 104 5.642491 CCATGAACTATGATCGAGATGCATT 59.358 40.000 0.00 0.00 39.21 3.56
104 105 6.815142 CCATGAACTATGATCGAGATGCATTA 59.185 38.462 0.00 0.00 39.21 1.90
105 106 7.332678 CCATGAACTATGATCGAGATGCATTAA 59.667 37.037 0.00 0.00 39.21 1.40
106 107 7.643528 TGAACTATGATCGAGATGCATTAAC 57.356 36.000 0.00 0.00 0.00 2.01
107 108 7.436933 TGAACTATGATCGAGATGCATTAACT 58.563 34.615 0.00 0.00 0.00 2.24
108 109 8.576442 TGAACTATGATCGAGATGCATTAACTA 58.424 33.333 0.00 0.00 0.00 2.24
109 110 9.579768 GAACTATGATCGAGATGCATTAACTAT 57.420 33.333 0.00 0.00 0.00 2.12
110 111 8.923609 ACTATGATCGAGATGCATTAACTATG 57.076 34.615 0.00 0.00 37.31 2.23
111 112 7.978414 ACTATGATCGAGATGCATTAACTATGG 59.022 37.037 0.00 0.00 34.66 2.74
112 113 6.101650 TGATCGAGATGCATTAACTATGGT 57.898 37.500 0.00 0.00 34.66 3.55
113 114 6.524734 TGATCGAGATGCATTAACTATGGTT 58.475 36.000 0.00 0.00 39.26 3.67
114 115 7.666623 TGATCGAGATGCATTAACTATGGTTA 58.333 34.615 0.00 0.00 36.92 2.85
115 116 8.314021 TGATCGAGATGCATTAACTATGGTTAT 58.686 33.333 0.00 0.00 37.69 1.89
116 117 7.889589 TCGAGATGCATTAACTATGGTTATG 57.110 36.000 0.00 5.11 37.69 1.90
117 118 6.873605 TCGAGATGCATTAACTATGGTTATGG 59.126 38.462 0.00 0.00 37.69 2.74
118 119 6.650807 CGAGATGCATTAACTATGGTTATGGT 59.349 38.462 0.00 0.00 37.69 3.55
119 120 7.817478 CGAGATGCATTAACTATGGTTATGGTA 59.183 37.037 0.00 0.00 37.69 3.25
120 121 9.672673 GAGATGCATTAACTATGGTTATGGTAT 57.327 33.333 0.00 3.62 37.69 2.73
121 122 9.453572 AGATGCATTAACTATGGTTATGGTATG 57.546 33.333 0.00 5.01 37.69 2.39
122 123 7.447374 TGCATTAACTATGGTTATGGTATGC 57.553 36.000 20.75 20.75 42.58 3.14
123 124 7.001073 TGCATTAACTATGGTTATGGTATGCA 58.999 34.615 23.95 23.95 45.68 3.96
124 125 7.040755 TGCATTAACTATGGTTATGGTATGCAC 60.041 37.037 23.95 7.82 44.50 4.57
125 126 7.040755 GCATTAACTATGGTTATGGTATGCACA 60.041 37.037 21.82 0.16 42.23 4.57
126 127 9.013229 CATTAACTATGGTTATGGTATGCACAT 57.987 33.333 2.17 0.00 37.69 3.21
127 128 6.882610 AACTATGGTTATGGTATGCACATG 57.117 37.500 0.00 0.00 33.39 3.21
128 129 5.940617 ACTATGGTTATGGTATGCACATGT 58.059 37.500 0.00 0.00 0.00 3.21
129 130 5.764686 ACTATGGTTATGGTATGCACATGTG 59.235 40.000 21.83 21.83 0.00 3.21
130 131 4.227864 TGGTTATGGTATGCACATGTGA 57.772 40.909 29.80 14.54 0.00 3.58
131 132 4.790937 TGGTTATGGTATGCACATGTGAT 58.209 39.130 29.80 19.95 0.00 3.06
132 133 5.199723 TGGTTATGGTATGCACATGTGATT 58.800 37.500 29.80 16.92 0.00 2.57
133 134 5.655974 TGGTTATGGTATGCACATGTGATTT 59.344 36.000 29.80 14.45 0.00 2.17
134 135 6.154192 TGGTTATGGTATGCACATGTGATTTT 59.846 34.615 29.80 12.03 0.00 1.82
135 136 7.041107 GGTTATGGTATGCACATGTGATTTTT 58.959 34.615 29.80 10.32 0.00 1.94
136 137 7.010367 GGTTATGGTATGCACATGTGATTTTTG 59.990 37.037 29.80 0.99 0.00 2.44
137 138 5.465532 TGGTATGCACATGTGATTTTTGT 57.534 34.783 29.80 8.35 0.00 2.83
138 139 5.228665 TGGTATGCACATGTGATTTTTGTG 58.771 37.500 29.80 0.94 42.80 3.33
139 140 5.221402 TGGTATGCACATGTGATTTTTGTGT 60.221 36.000 29.80 5.91 42.11 3.72
140 141 5.118971 GGTATGCACATGTGATTTTTGTGTG 59.881 40.000 29.80 0.00 42.11 3.82
144 145 5.660629 CACATGTGATTTTTGTGTGCAAT 57.339 34.783 21.64 0.00 36.77 3.56
145 146 5.436410 CACATGTGATTTTTGTGTGCAATG 58.564 37.500 21.64 0.00 36.77 2.82
146 147 5.006844 CACATGTGATTTTTGTGTGCAATGT 59.993 36.000 21.64 0.00 36.77 2.71
147 148 5.585445 ACATGTGATTTTTGTGTGCAATGTT 59.415 32.000 0.00 0.00 34.18 2.71
148 149 6.093771 ACATGTGATTTTTGTGTGCAATGTTT 59.906 30.769 0.00 0.00 34.18 2.83
149 150 7.279536 ACATGTGATTTTTGTGTGCAATGTTTA 59.720 29.630 0.00 0.00 34.18 2.01
150 151 7.783090 TGTGATTTTTGTGTGCAATGTTTAT 57.217 28.000 0.00 0.00 34.18 1.40
151 152 7.628235 TGTGATTTTTGTGTGCAATGTTTATG 58.372 30.769 0.00 0.00 34.18 1.90
152 153 6.574462 GTGATTTTTGTGTGCAATGTTTATGC 59.426 34.615 0.00 0.00 44.08 3.14
153 154 6.482641 TGATTTTTGTGTGCAATGTTTATGCT 59.517 30.769 0.00 0.00 44.14 3.79
154 155 5.654317 TTTTGTGTGCAATGTTTATGCTG 57.346 34.783 0.00 0.00 44.14 4.41
155 156 3.300852 TGTGTGCAATGTTTATGCTGG 57.699 42.857 0.00 0.00 44.14 4.85
404 428 2.197324 AAGGCCCAACCGCTCAAA 59.803 55.556 0.00 0.00 46.52 2.69
677 716 0.533085 GCTCGAATTCCACCCCTAGC 60.533 60.000 0.00 0.00 0.00 3.42
682 721 1.937924 AATTCCACCCCTAGCTGGCC 61.938 60.000 0.00 0.00 0.00 5.36
683 722 2.865183 ATTCCACCCCTAGCTGGCCT 62.865 60.000 3.32 0.00 0.00 5.19
684 723 3.801997 CCACCCCTAGCTGGCCTG 61.802 72.222 3.32 4.26 0.00 4.85
685 724 2.688666 CACCCCTAGCTGGCCTGA 60.689 66.667 14.77 0.00 0.00 3.86
686 725 2.124996 ACCCCTAGCTGGCCTGAA 59.875 61.111 14.77 0.00 0.00 3.02
687 726 1.308216 ACCCCTAGCTGGCCTGAAT 60.308 57.895 14.77 3.37 0.00 2.57
688 727 0.030092 ACCCCTAGCTGGCCTGAATA 60.030 55.000 14.77 4.43 0.00 1.75
689 728 1.366319 CCCCTAGCTGGCCTGAATAT 58.634 55.000 14.77 0.00 0.00 1.28
690 729 1.004044 CCCCTAGCTGGCCTGAATATG 59.996 57.143 14.77 2.70 0.00 1.78
691 730 1.980765 CCCTAGCTGGCCTGAATATGA 59.019 52.381 14.77 0.00 0.00 2.15
692 731 2.575279 CCCTAGCTGGCCTGAATATGAT 59.425 50.000 14.77 0.00 0.00 2.45
693 732 3.776969 CCCTAGCTGGCCTGAATATGATA 59.223 47.826 14.77 0.00 0.00 2.15
694 733 4.383552 CCCTAGCTGGCCTGAATATGATAC 60.384 50.000 14.77 0.00 0.00 2.24
695 734 3.710209 AGCTGGCCTGAATATGATACC 57.290 47.619 14.77 0.00 0.00 2.73
696 735 2.981784 AGCTGGCCTGAATATGATACCA 59.018 45.455 14.77 0.00 0.00 3.25
697 736 3.590630 AGCTGGCCTGAATATGATACCAT 59.409 43.478 14.77 0.00 36.81 3.55
698 737 3.693085 GCTGGCCTGAATATGATACCATG 59.307 47.826 14.77 0.00 34.31 3.66
699 738 3.689347 TGGCCTGAATATGATACCATGC 58.311 45.455 3.32 0.00 34.31 4.06
700 739 3.074242 TGGCCTGAATATGATACCATGCA 59.926 43.478 3.32 0.00 34.31 3.96
701 740 4.081406 GGCCTGAATATGATACCATGCAA 58.919 43.478 0.00 0.00 34.31 4.08
702 741 4.523943 GGCCTGAATATGATACCATGCAAA 59.476 41.667 0.00 0.00 34.31 3.68
703 742 5.010922 GGCCTGAATATGATACCATGCAAAA 59.989 40.000 0.00 0.00 34.31 2.44
704 743 6.462768 GGCCTGAATATGATACCATGCAAAAA 60.463 38.462 0.00 0.00 34.31 1.94
705 744 7.156673 GCCTGAATATGATACCATGCAAAAAT 58.843 34.615 0.00 0.00 34.31 1.82
706 745 7.117236 GCCTGAATATGATACCATGCAAAAATG 59.883 37.037 0.00 0.00 34.31 2.32
707 746 7.117236 CCTGAATATGATACCATGCAAAAATGC 59.883 37.037 0.00 0.00 34.31 3.56
708 747 7.728148 TGAATATGATACCATGCAAAAATGCT 58.272 30.769 0.00 0.00 34.31 3.79
709 748 8.858094 TGAATATGATACCATGCAAAAATGCTA 58.142 29.630 0.00 0.00 34.31 3.49
710 749 9.132521 GAATATGATACCATGCAAAAATGCTAC 57.867 33.333 0.00 0.00 34.31 3.58
711 750 5.261209 TGATACCATGCAAAAATGCTACC 57.739 39.130 0.00 0.00 35.49 3.18
712 751 4.955450 TGATACCATGCAAAAATGCTACCT 59.045 37.500 0.00 0.00 35.49 3.08
713 752 3.874392 ACCATGCAAAAATGCTACCTC 57.126 42.857 0.00 0.00 35.49 3.85
714 753 2.497273 ACCATGCAAAAATGCTACCTCC 59.503 45.455 0.00 0.00 35.49 4.30
715 754 2.480073 CCATGCAAAAATGCTACCTCCG 60.480 50.000 0.00 0.00 35.49 4.63
716 755 1.173043 TGCAAAAATGCTACCTCCGG 58.827 50.000 0.00 0.00 35.49 5.14
717 756 1.173913 GCAAAAATGCTACCTCCGGT 58.826 50.000 0.00 0.00 40.16 5.28
718 757 1.544246 GCAAAAATGCTACCTCCGGTT 59.456 47.619 0.00 0.00 37.09 4.44
719 758 2.415491 GCAAAAATGCTACCTCCGGTTC 60.415 50.000 0.00 0.00 37.09 3.62
720 759 2.817258 CAAAAATGCTACCTCCGGTTCA 59.183 45.455 0.00 0.00 37.09 3.18
721 760 2.871096 AAATGCTACCTCCGGTTCAA 57.129 45.000 0.00 0.00 37.09 2.69
722 761 2.871096 AATGCTACCTCCGGTTCAAA 57.129 45.000 0.00 0.00 37.09 2.69
723 762 3.366052 AATGCTACCTCCGGTTCAAAT 57.634 42.857 0.00 0.00 37.09 2.32
724 763 2.871096 TGCTACCTCCGGTTCAAATT 57.129 45.000 0.00 0.00 37.09 1.82
725 764 3.985019 TGCTACCTCCGGTTCAAATTA 57.015 42.857 0.00 0.00 37.09 1.40
726 765 4.289238 TGCTACCTCCGGTTCAAATTAA 57.711 40.909 0.00 0.00 37.09 1.40
727 766 4.850680 TGCTACCTCCGGTTCAAATTAAT 58.149 39.130 0.00 0.00 37.09 1.40
728 767 5.258051 TGCTACCTCCGGTTCAAATTAATT 58.742 37.500 0.00 0.00 37.09 1.40
729 768 5.124776 TGCTACCTCCGGTTCAAATTAATTG 59.875 40.000 0.00 0.00 37.47 2.32
730 769 5.124936 GCTACCTCCGGTTCAAATTAATTGT 59.875 40.000 0.00 0.00 37.43 2.71
731 770 6.316890 GCTACCTCCGGTTCAAATTAATTGTA 59.683 38.462 0.00 0.00 37.43 2.41
732 771 6.753107 ACCTCCGGTTCAAATTAATTGTAG 57.247 37.500 0.00 0.00 40.11 2.74
733 772 6.243148 ACCTCCGGTTCAAATTAATTGTAGT 58.757 36.000 0.00 0.00 40.11 2.73
734 773 7.396418 ACCTCCGGTTCAAATTAATTGTAGTA 58.604 34.615 0.00 0.00 40.11 1.82
735 774 7.884354 ACCTCCGGTTCAAATTAATTGTAGTAA 59.116 33.333 0.00 0.00 40.11 2.24
736 775 8.899771 CCTCCGGTTCAAATTAATTGTAGTAAT 58.100 33.333 0.00 0.00 40.11 1.89
762 801 8.999220 AGTTTTAGTATAACCTTGTACTCAGC 57.001 34.615 0.00 0.00 36.63 4.26
763 802 8.813951 AGTTTTAGTATAACCTTGTACTCAGCT 58.186 33.333 0.00 0.00 36.63 4.24
764 803 8.870879 GTTTTAGTATAACCTTGTACTCAGCTG 58.129 37.037 7.63 7.63 36.63 4.24
765 804 5.599999 AGTATAACCTTGTACTCAGCTGG 57.400 43.478 15.13 7.28 30.55 4.85
766 805 5.269991 AGTATAACCTTGTACTCAGCTGGA 58.730 41.667 15.13 0.00 30.55 3.86
780 819 6.761731 CTCAGCTGGAGTAGATTTATTTCG 57.238 41.667 15.13 0.00 38.90 3.46
797 836 4.772046 TTTCGCTAAATCTACGACATGC 57.228 40.909 0.00 0.00 35.20 4.06
815 854 6.584942 CGACATGCTTTTAACACTAGTGTAGA 59.415 38.462 28.13 16.61 44.13 2.59
816 855 7.115805 CGACATGCTTTTAACACTAGTGTAGAA 59.884 37.037 28.13 21.09 44.13 2.10
817 856 8.084590 ACATGCTTTTAACACTAGTGTAGAAC 57.915 34.615 28.13 15.71 44.13 3.01
818 857 6.758593 TGCTTTTAACACTAGTGTAGAACG 57.241 37.500 28.13 21.16 44.13 3.95
819 858 5.176223 TGCTTTTAACACTAGTGTAGAACGC 59.824 40.000 28.13 27.83 44.13 4.84
820 859 5.404667 GCTTTTAACACTAGTGTAGAACGCT 59.595 40.000 28.13 13.52 44.13 5.07
821 860 6.399775 GCTTTTAACACTAGTGTAGAACGCTC 60.400 42.308 28.13 10.35 44.13 5.03
822 861 5.954296 TTAACACTAGTGTAGAACGCTCT 57.046 39.130 28.13 12.09 44.13 4.09
823 862 7.439157 TTTAACACTAGTGTAGAACGCTCTA 57.561 36.000 28.13 11.09 44.13 2.43
824 863 5.954296 AACACTAGTGTAGAACGCTCTAA 57.046 39.130 28.13 0.00 44.13 2.10
825 864 6.512342 AACACTAGTGTAGAACGCTCTAAT 57.488 37.500 28.13 5.58 44.13 1.73
826 865 7.621428 AACACTAGTGTAGAACGCTCTAATA 57.379 36.000 28.13 0.00 44.13 0.98
828 867 8.223177 ACACTAGTGTAGAACGCTCTAATATT 57.777 34.615 26.91 0.00 42.90 1.28
829 868 9.334947 ACACTAGTGTAGAACGCTCTAATATTA 57.665 33.333 26.91 0.00 42.90 0.98
834 873 8.088981 AGTGTAGAACGCTCTAATATTAATGGG 58.911 37.037 0.00 3.83 32.75 4.00
835 874 8.086522 GTGTAGAACGCTCTAATATTAATGGGA 58.913 37.037 14.21 1.81 35.89 4.37
836 875 8.304596 TGTAGAACGCTCTAATATTAATGGGAG 58.695 37.037 14.21 10.15 35.89 4.30
843 882 6.070538 GCTCTAATATTAATGGGAGAGAGGCA 60.071 42.308 18.97 0.00 33.72 4.75
847 886 7.821134 AATATTAATGGGAGAGAGGCAGTAT 57.179 36.000 0.00 0.00 0.00 2.12
856 895 5.247110 GGGAGAGAGGCAGTATATTTGATGA 59.753 44.000 0.00 0.00 0.00 2.92
858 897 7.220030 GGAGAGAGGCAGTATATTTGATGAAA 58.780 38.462 0.00 0.00 0.00 2.69
881 921 2.438434 GAATGGCGTGGACCCCTG 60.438 66.667 0.00 0.00 0.00 4.45
885 925 2.682494 GGCGTGGACCCCTGTCTA 60.682 66.667 0.00 0.00 41.47 2.59
895 935 1.480954 ACCCCTGTCTAGCACATTACG 59.519 52.381 0.00 0.00 33.23 3.18
923 963 2.047179 GGTCGGCTGGTTGGAGTC 60.047 66.667 0.00 0.00 0.00 3.36
1200 1240 2.663478 TTCACGGTTGTCGATGCGC 61.663 57.895 0.00 0.00 42.43 6.09
1315 1355 2.550830 ATCGTGAACTTGAGCTGGTT 57.449 45.000 0.00 0.00 0.00 3.67
1320 1360 3.211045 GTGAACTTGAGCTGGTTAACCA 58.789 45.455 25.58 25.58 45.30 3.67
1328 1368 3.572255 TGAGCTGGTTAACCAATGGTTTC 59.428 43.478 26.90 15.74 44.33 2.78
1330 1370 4.993028 AGCTGGTTAACCAATGGTTTCTA 58.007 39.130 26.90 13.22 44.33 2.10
1410 1450 9.374838 GCTGTATGATTTTTCATCTCCATTTTT 57.625 29.630 0.00 0.00 0.00 1.94
1432 1472 9.569167 TTTTTGTTACAATACATGTCGTTTGAA 57.431 25.926 17.91 8.74 42.70 2.69
1436 1476 8.065407 TGTTACAATACATGTCGTTTGAACTTC 58.935 33.333 17.91 7.93 42.70 3.01
1442 1482 2.226330 TGTCGTTTGAACTTCCCATGG 58.774 47.619 4.14 4.14 0.00 3.66
1451 1491 3.267233 TTCCCATGGGCTGGCACT 61.267 61.111 27.41 0.00 44.46 4.40
1479 1519 4.644685 ACACCAGCTGTTTGTTGAAATACT 59.355 37.500 13.81 0.00 0.00 2.12
1501 1541 1.827969 GTGTGGAGTATGAGCTCTGGT 59.172 52.381 16.19 3.71 35.89 4.00
1508 1548 3.636300 GAGTATGAGCTCTGGTCAGTGAT 59.364 47.826 16.19 0.00 43.30 3.06
1517 1557 3.017442 TCTGGTCAGTGATTAGGACTCG 58.983 50.000 0.00 0.00 0.00 4.18
1521 1561 3.018149 GTCAGTGATTAGGACTCGAGGT 58.982 50.000 18.41 1.94 0.00 3.85
1530 1570 0.667792 GGACTCGAGGTGCAGTGTTC 60.668 60.000 18.41 1.18 36.25 3.18
1546 1586 3.074412 GTGTTCTATGAACTGGTGGGTG 58.926 50.000 11.06 0.00 0.00 4.61
1559 1599 1.632589 GTGGGTGCCAGAAATCCTTT 58.367 50.000 0.00 0.00 32.34 3.11
1609 1649 5.189180 GGATTTCAGCCTGAATTACTGTCT 58.811 41.667 8.18 0.00 36.11 3.41
1641 1681 1.817357 TCTGCCATCTTGCTTGTCAG 58.183 50.000 0.00 0.00 0.00 3.51
1659 1708 4.403752 TGTCAGATCAACATCTACTGGGAG 59.596 45.833 0.00 0.00 37.25 4.30
1689 1738 6.258727 TGCATAACTAGCTGAATCTAACAAGC 59.741 38.462 0.00 0.00 0.00 4.01
1747 1796 4.658063 ACCGACATGAATTAAGGGTTTCA 58.342 39.130 0.00 0.00 36.38 2.69
1800 1849 5.918608 TGCAGATCTTAAGTTATCTGGACC 58.081 41.667 24.70 14.67 46.04 4.46
1803 1852 7.290014 TGCAGATCTTAAGTTATCTGGACCATA 59.710 37.037 24.70 0.00 46.04 2.74
1896 1945 2.553602 TCAGTGCAGCGAAATCATTTGT 59.446 40.909 0.00 0.00 0.00 2.83
1909 1958 7.275341 GCGAAATCATTTGTCAAATCCAATACA 59.725 33.333 7.87 0.00 0.00 2.29
1931 1980 6.656902 ACATGATGTGGATCTTGTGATTACT 58.343 36.000 0.00 0.00 42.50 2.24
2015 2064 4.317671 AGGTGTTAATTCGGATCCTACG 57.682 45.455 10.75 0.00 0.00 3.51
2040 2089 5.997746 TGTTCTGATGAGGTTAGTTCTTTGG 59.002 40.000 0.00 0.00 0.00 3.28
2042 2091 5.794894 TCTGATGAGGTTAGTTCTTTGGAC 58.205 41.667 0.00 0.00 0.00 4.02
2044 2093 4.039973 TGATGAGGTTAGTTCTTTGGACGT 59.960 41.667 0.00 0.00 0.00 4.34
2048 2097 3.314357 AGGTTAGTTCTTTGGACGTTTGC 59.686 43.478 0.00 0.00 0.00 3.68
2097 2146 6.375174 TCACATTAGCAATGCTTGTTGACTAT 59.625 34.615 14.85 0.00 42.69 2.12
2161 2210 9.453572 ACTAATGGTTATACATATGCTTGATGG 57.546 33.333 1.58 0.00 0.00 3.51
2168 2217 9.231297 GTTATACATATGCTTGATGGGTATGTT 57.769 33.333 1.58 0.00 37.26 2.71
2183 2232 9.887406 GATGGGTATGTTTATGGTTTTATAACG 57.113 33.333 0.00 0.00 35.00 3.18
2197 2246 1.832883 ATAACGCCATGCAGGTTGAA 58.167 45.000 0.00 0.00 40.61 2.69
2206 2255 3.191371 CCATGCAGGTTGAAGAGTTAACC 59.809 47.826 0.88 0.00 45.24 2.85
2221 2270 3.374058 AGTTAACCGAGGAATTTGATGCG 59.626 43.478 0.88 0.00 0.00 4.73
2266 2315 2.191128 CAGCTACTGCCAGGAACTTT 57.809 50.000 0.00 0.00 40.80 2.66
2279 2328 4.074970 CAGGAACTTTGAGCAGGTATGTT 58.925 43.478 0.00 0.00 34.60 2.71
2280 2329 4.520492 CAGGAACTTTGAGCAGGTATGTTT 59.480 41.667 0.00 0.00 34.60 2.83
2285 2334 4.757149 ACTTTGAGCAGGTATGTTTCTGTC 59.243 41.667 0.00 0.00 33.81 3.51
2304 2353 1.893137 TCGCCTAGTCTTCTTGCTTGA 59.107 47.619 0.00 0.00 0.00 3.02
2307 2356 2.679349 GCCTAGTCTTCTTGCTTGAGGG 60.679 54.545 0.00 0.00 0.00 4.30
2340 2389 8.294341 TCGTTTTCTTACAGAAATCACACTAG 57.706 34.615 0.00 0.00 43.06 2.57
2353 2406 9.372369 AGAAATCACACTAGTCTGCTTTTATAC 57.628 33.333 2.19 0.00 0.00 1.47
2354 2407 9.151471 GAAATCACACTAGTCTGCTTTTATACA 57.849 33.333 2.19 0.00 0.00 2.29
2370 2423 7.148373 GCTTTTATACAGTCGGAACATTTACCA 60.148 37.037 0.00 0.00 0.00 3.25
2472 2525 8.143193 CACTATTCAGAGCTGTCAAGAATATCT 58.857 37.037 0.00 0.00 34.30 1.98
2499 2552 3.393687 ACTAAATGGATCCCAGCTACCA 58.606 45.455 9.90 0.00 36.75 3.25
2556 2609 3.261951 CCGGCAAGTGTATCGCGG 61.262 66.667 6.13 0.00 0.00 6.46
2627 2680 8.641498 ATTTTCTGTGATCAATTCTAACTGGT 57.359 30.769 0.00 0.00 0.00 4.00
2836 2889 1.290955 CAAACCACTGCTGCATGGG 59.709 57.895 24.74 20.72 40.59 4.00
3080 3136 1.636988 GCATGATGTTTGAGGCAAGC 58.363 50.000 0.00 0.00 0.00 4.01
3084 3140 0.881118 GATGTTTGAGGCAAGCGGAA 59.119 50.000 0.00 0.00 0.00 4.30
3096 3152 2.742053 GCAAGCGGAATTCTTGAGTACA 59.258 45.455 5.23 0.00 42.52 2.90
3254 3332 8.198778 GGTGATTTTGTAGTTTACCCTTTTTGA 58.801 33.333 0.00 0.00 0.00 2.69
3255 3333 9.589111 GTGATTTTGTAGTTTACCCTTTTTGAA 57.411 29.630 0.00 0.00 0.00 2.69
3256 3334 9.810545 TGATTTTGTAGTTTACCCTTTTTGAAG 57.189 29.630 0.00 0.00 0.00 3.02
3257 3335 8.657074 ATTTTGTAGTTTACCCTTTTTGAAGC 57.343 30.769 0.00 0.00 0.00 3.86
3258 3336 6.777213 TTGTAGTTTACCCTTTTTGAAGCA 57.223 33.333 0.00 0.00 0.00 3.91
3259 3337 6.777213 TGTAGTTTACCCTTTTTGAAGCAA 57.223 33.333 0.00 0.00 0.00 3.91
3359 3437 2.067766 GCAGTTCTGAAGCAGAGAGTG 58.932 52.381 3.84 0.00 41.75 3.51
3408 3486 7.638683 GGCGTTTTTATGTTAGTAGCTACATTG 59.361 37.037 25.28 2.20 0.00 2.82
3451 3529 1.134371 GCCTAGCCCTAGTGGTTCTTG 60.134 57.143 1.99 0.00 36.04 3.02
3580 3658 1.069823 CCGTTATGCTCTGGCTCTCAT 59.930 52.381 0.00 0.00 39.59 2.90
3597 3675 5.047092 GCTCTCATTTGGATTTTCCCAGAAA 60.047 40.000 0.00 0.00 37.53 2.52
3693 3771 3.385384 CCCTCGAGCAGGCTCACA 61.385 66.667 20.18 6.00 41.80 3.58
3696 3774 3.292500 CTCGAGCAGGCTCACAGCA 62.293 63.158 20.18 0.00 44.75 4.41
3720 3798 6.428083 TTGGACATCTTTGGTCTAAGTGTA 57.572 37.500 0.00 0.00 31.87 2.90
3884 3962 4.459330 AGATGCAATTAGCCTCTTCCTTC 58.541 43.478 0.00 0.00 44.49 3.46
3885 3963 3.719268 TGCAATTAGCCTCTTCCTTCA 57.281 42.857 0.00 0.00 44.83 3.02
4011 4089 9.436957 TCCTTTAACTATTCTCTCAAATGACAC 57.563 33.333 0.00 0.00 0.00 3.67
4012 4090 9.219603 CCTTTAACTATTCTCTCAAATGACACA 57.780 33.333 0.00 0.00 0.00 3.72
4015 4093 7.856145 AACTATTCTCTCAAATGACACATCC 57.144 36.000 0.00 0.00 0.00 3.51
4016 4094 7.192852 ACTATTCTCTCAAATGACACATCCT 57.807 36.000 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.433970 TCTCAAACCAAGCCCCTTTTTG 59.566 45.455 0.00 0.00 0.00 2.44
1 2 2.700371 CTCTCAAACCAAGCCCCTTTTT 59.300 45.455 0.00 0.00 0.00 1.94
2 3 2.319844 CTCTCAAACCAAGCCCCTTTT 58.680 47.619 0.00 0.00 0.00 2.27
3 4 1.481242 CCTCTCAAACCAAGCCCCTTT 60.481 52.381 0.00 0.00 0.00 3.11
4 5 0.113190 CCTCTCAAACCAAGCCCCTT 59.887 55.000 0.00 0.00 0.00 3.95
5 6 0.772124 TCCTCTCAAACCAAGCCCCT 60.772 55.000 0.00 0.00 0.00 4.79
6 7 0.112412 TTCCTCTCAAACCAAGCCCC 59.888 55.000 0.00 0.00 0.00 5.80
7 8 1.539157 CTTCCTCTCAAACCAAGCCC 58.461 55.000 0.00 0.00 0.00 5.19
8 9 0.884514 GCTTCCTCTCAAACCAAGCC 59.115 55.000 0.00 0.00 34.59 4.35
9 10 1.609208 TGCTTCCTCTCAAACCAAGC 58.391 50.000 0.00 0.00 39.98 4.01
10 11 4.098501 ACTTTTGCTTCCTCTCAAACCAAG 59.901 41.667 0.00 0.00 32.58 3.61
11 12 4.023291 ACTTTTGCTTCCTCTCAAACCAA 58.977 39.130 0.00 0.00 32.58 3.67
12 13 3.631250 ACTTTTGCTTCCTCTCAAACCA 58.369 40.909 0.00 0.00 32.58 3.67
13 14 4.097892 TGAACTTTTGCTTCCTCTCAAACC 59.902 41.667 0.00 0.00 32.58 3.27
14 15 5.248870 TGAACTTTTGCTTCCTCTCAAAC 57.751 39.130 0.00 0.00 32.58 2.93
15 16 5.593909 TCATGAACTTTTGCTTCCTCTCAAA 59.406 36.000 0.00 0.00 0.00 2.69
16 17 5.132502 TCATGAACTTTTGCTTCCTCTCAA 58.867 37.500 0.00 0.00 0.00 3.02
17 18 4.717877 TCATGAACTTTTGCTTCCTCTCA 58.282 39.130 0.00 0.00 0.00 3.27
18 19 5.392811 CCATCATGAACTTTTGCTTCCTCTC 60.393 44.000 0.00 0.00 0.00 3.20
19 20 4.461781 CCATCATGAACTTTTGCTTCCTCT 59.538 41.667 0.00 0.00 0.00 3.69
20 21 4.460382 TCCATCATGAACTTTTGCTTCCTC 59.540 41.667 0.00 0.00 0.00 3.71
21 22 4.219288 GTCCATCATGAACTTTTGCTTCCT 59.781 41.667 0.00 0.00 0.00 3.36
22 23 4.488879 GTCCATCATGAACTTTTGCTTCC 58.511 43.478 0.00 0.00 0.00 3.46
23 24 4.488879 GGTCCATCATGAACTTTTGCTTC 58.511 43.478 0.00 0.00 0.00 3.86
24 25 3.057315 CGGTCCATCATGAACTTTTGCTT 60.057 43.478 0.00 0.00 0.00 3.91
25 26 2.489329 CGGTCCATCATGAACTTTTGCT 59.511 45.455 0.00 0.00 0.00 3.91
26 27 2.487762 TCGGTCCATCATGAACTTTTGC 59.512 45.455 0.00 0.00 0.00 3.68
27 28 4.002982 TCTCGGTCCATCATGAACTTTTG 58.997 43.478 0.00 0.00 0.00 2.44
28 29 4.286297 TCTCGGTCCATCATGAACTTTT 57.714 40.909 0.00 0.00 0.00 2.27
29 30 3.981071 TCTCGGTCCATCATGAACTTT 57.019 42.857 0.00 0.00 0.00 2.66
30 31 3.801698 CATCTCGGTCCATCATGAACTT 58.198 45.455 0.00 0.00 0.00 2.66
31 32 2.484417 GCATCTCGGTCCATCATGAACT 60.484 50.000 0.00 0.00 0.00 3.01
32 33 1.869767 GCATCTCGGTCCATCATGAAC 59.130 52.381 0.00 0.00 0.00 3.18
33 34 1.538849 CGCATCTCGGTCCATCATGAA 60.539 52.381 0.00 0.00 33.78 2.57
34 35 0.032540 CGCATCTCGGTCCATCATGA 59.967 55.000 0.00 0.00 33.78 3.07
35 36 0.249615 ACGCATCTCGGTCCATCATG 60.250 55.000 0.00 0.00 43.86 3.07
36 37 1.328279 TACGCATCTCGGTCCATCAT 58.672 50.000 0.00 0.00 43.86 2.45
37 38 1.107945 TTACGCATCTCGGTCCATCA 58.892 50.000 0.00 0.00 43.86 3.07
38 39 2.288213 TGATTACGCATCTCGGTCCATC 60.288 50.000 0.00 0.00 43.86 3.51
39 40 1.686587 TGATTACGCATCTCGGTCCAT 59.313 47.619 0.00 0.00 43.86 3.41
40 41 1.107945 TGATTACGCATCTCGGTCCA 58.892 50.000 0.00 0.00 43.86 4.02
41 42 2.329379 GATGATTACGCATCTCGGTCC 58.671 52.381 0.00 0.00 43.86 4.46
42 43 2.029828 AGGATGATTACGCATCTCGGTC 60.030 50.000 0.00 0.00 43.25 4.79
43 44 1.964223 AGGATGATTACGCATCTCGGT 59.036 47.619 0.00 0.00 43.25 4.69
44 45 2.732412 AGGATGATTACGCATCTCGG 57.268 50.000 0.00 0.00 43.25 4.63
45 46 7.489435 ACAAATATAGGATGATTACGCATCTCG 59.511 37.037 0.00 0.00 43.25 4.04
46 47 8.709386 ACAAATATAGGATGATTACGCATCTC 57.291 34.615 0.00 0.00 43.25 2.75
47 48 9.507329 AAACAAATATAGGATGATTACGCATCT 57.493 29.630 0.00 0.00 43.25 2.90
48 49 9.546909 CAAACAAATATAGGATGATTACGCATC 57.453 33.333 0.00 0.00 43.04 3.91
49 50 9.066892 ACAAACAAATATAGGATGATTACGCAT 57.933 29.630 0.00 0.00 0.00 4.73
50 51 8.445275 ACAAACAAATATAGGATGATTACGCA 57.555 30.769 0.00 0.00 0.00 5.24
51 52 9.730420 AAACAAACAAATATAGGATGATTACGC 57.270 29.630 0.00 0.00 0.00 4.42
60 61 9.921637 GTTCATGGAAAACAAACAAATATAGGA 57.078 29.630 0.00 0.00 0.00 2.94
61 62 9.927668 AGTTCATGGAAAACAAACAAATATAGG 57.072 29.630 0.00 0.00 0.00 2.57
67 68 9.474920 GATCATAGTTCATGGAAAACAAACAAA 57.525 29.630 0.00 0.00 35.16 2.83
68 69 7.807433 CGATCATAGTTCATGGAAAACAAACAA 59.193 33.333 0.00 0.00 35.16 2.83
69 70 7.174080 TCGATCATAGTTCATGGAAAACAAACA 59.826 33.333 0.00 0.00 35.16 2.83
70 71 7.526608 TCGATCATAGTTCATGGAAAACAAAC 58.473 34.615 0.00 0.00 35.16 2.93
71 72 7.606073 TCTCGATCATAGTTCATGGAAAACAAA 59.394 33.333 0.00 0.00 35.16 2.83
72 73 7.102993 TCTCGATCATAGTTCATGGAAAACAA 58.897 34.615 0.00 0.00 35.16 2.83
73 74 6.639563 TCTCGATCATAGTTCATGGAAAACA 58.360 36.000 0.00 0.00 35.16 2.83
74 75 7.571026 CATCTCGATCATAGTTCATGGAAAAC 58.429 38.462 0.00 0.00 35.16 2.43
75 76 6.203530 GCATCTCGATCATAGTTCATGGAAAA 59.796 38.462 0.00 0.00 35.16 2.29
76 77 5.698089 GCATCTCGATCATAGTTCATGGAAA 59.302 40.000 0.00 0.00 35.16 3.13
77 78 5.221501 TGCATCTCGATCATAGTTCATGGAA 60.222 40.000 0.00 0.00 35.16 3.53
78 79 4.281688 TGCATCTCGATCATAGTTCATGGA 59.718 41.667 0.00 0.00 35.16 3.41
79 80 4.563061 TGCATCTCGATCATAGTTCATGG 58.437 43.478 0.00 0.00 35.16 3.66
80 81 6.723131 AATGCATCTCGATCATAGTTCATG 57.277 37.500 0.00 0.00 35.81 3.07
81 82 8.093307 AGTTAATGCATCTCGATCATAGTTCAT 58.907 33.333 0.00 0.00 0.00 2.57
82 83 7.436933 AGTTAATGCATCTCGATCATAGTTCA 58.563 34.615 0.00 0.00 0.00 3.18
83 84 7.881643 AGTTAATGCATCTCGATCATAGTTC 57.118 36.000 0.00 0.00 0.00 3.01
84 85 9.363763 CATAGTTAATGCATCTCGATCATAGTT 57.636 33.333 0.00 0.00 0.00 2.24
85 86 7.978414 CCATAGTTAATGCATCTCGATCATAGT 59.022 37.037 0.00 0.00 33.92 2.12
86 87 7.978414 ACCATAGTTAATGCATCTCGATCATAG 59.022 37.037 0.00 0.00 33.92 2.23
87 88 7.840931 ACCATAGTTAATGCATCTCGATCATA 58.159 34.615 0.00 0.00 33.92 2.15
88 89 6.705302 ACCATAGTTAATGCATCTCGATCAT 58.295 36.000 0.00 0.00 33.92 2.45
89 90 6.101650 ACCATAGTTAATGCATCTCGATCA 57.898 37.500 0.00 0.00 33.92 2.92
90 91 8.598924 CATAACCATAGTTAATGCATCTCGATC 58.401 37.037 0.00 0.00 41.68 3.69
91 92 7.550551 CCATAACCATAGTTAATGCATCTCGAT 59.449 37.037 0.00 0.00 41.68 3.59
92 93 6.873605 CCATAACCATAGTTAATGCATCTCGA 59.126 38.462 0.00 0.00 41.68 4.04
93 94 6.650807 ACCATAACCATAGTTAATGCATCTCG 59.349 38.462 0.00 0.00 41.68 4.04
94 95 7.986085 ACCATAACCATAGTTAATGCATCTC 57.014 36.000 0.00 0.00 41.68 2.75
95 96 9.453572 CATACCATAACCATAGTTAATGCATCT 57.546 33.333 0.00 0.00 41.68 2.90
96 97 8.184192 GCATACCATAACCATAGTTAATGCATC 58.816 37.037 0.00 0.00 42.86 3.91
97 98 7.669304 TGCATACCATAACCATAGTTAATGCAT 59.331 33.333 13.60 0.00 45.30 3.96
98 99 7.001073 TGCATACCATAACCATAGTTAATGCA 58.999 34.615 13.60 13.60 46.56 3.96
99 100 7.040755 TGTGCATACCATAACCATAGTTAATGC 60.041 37.037 9.92 9.92 43.24 3.56
100 101 8.389779 TGTGCATACCATAACCATAGTTAATG 57.610 34.615 0.00 0.00 41.68 1.90
101 102 9.013229 CATGTGCATACCATAACCATAGTTAAT 57.987 33.333 0.00 0.00 41.68 1.40
102 103 7.996066 ACATGTGCATACCATAACCATAGTTAA 59.004 33.333 0.00 0.00 41.68 2.01
103 104 7.443879 CACATGTGCATACCATAACCATAGTTA 59.556 37.037 13.94 0.00 42.54 2.24
104 105 6.262944 CACATGTGCATACCATAACCATAGTT 59.737 38.462 13.94 0.00 40.15 2.24
105 106 5.764686 CACATGTGCATACCATAACCATAGT 59.235 40.000 13.94 0.00 0.00 2.12
106 107 5.997129 TCACATGTGCATACCATAACCATAG 59.003 40.000 21.38 0.00 0.00 2.23
107 108 5.934781 TCACATGTGCATACCATAACCATA 58.065 37.500 21.38 0.00 0.00 2.74
108 109 4.790937 TCACATGTGCATACCATAACCAT 58.209 39.130 21.38 0.00 0.00 3.55
109 110 4.227864 TCACATGTGCATACCATAACCA 57.772 40.909 21.38 0.00 0.00 3.67
110 111 5.772825 AATCACATGTGCATACCATAACC 57.227 39.130 21.38 0.00 0.00 2.85
111 112 7.545265 ACAAAAATCACATGTGCATACCATAAC 59.455 33.333 21.38 0.00 0.00 1.89
112 113 7.544915 CACAAAAATCACATGTGCATACCATAA 59.455 33.333 21.38 0.43 38.14 1.90
113 114 7.034397 CACAAAAATCACATGTGCATACCATA 58.966 34.615 21.38 1.22 38.14 2.74
114 115 5.870433 CACAAAAATCACATGTGCATACCAT 59.130 36.000 21.38 5.30 38.14 3.55
115 116 5.221402 ACACAAAAATCACATGTGCATACCA 60.221 36.000 21.38 2.81 46.42 3.25
116 117 5.118971 CACACAAAAATCACATGTGCATACC 59.881 40.000 21.38 0.00 46.42 2.73
117 118 6.143349 CACACAAAAATCACATGTGCATAC 57.857 37.500 21.38 0.00 46.42 2.39
123 124 5.117584 ACATTGCACACAAAAATCACATGT 58.882 33.333 0.00 0.00 39.77 3.21
124 125 5.660629 ACATTGCACACAAAAATCACATG 57.339 34.783 0.00 0.00 39.77 3.21
125 126 6.680874 AAACATTGCACACAAAAATCACAT 57.319 29.167 0.00 0.00 39.77 3.21
126 127 7.628235 CATAAACATTGCACACAAAAATCACA 58.372 30.769 0.00 0.00 39.77 3.58
127 128 6.574462 GCATAAACATTGCACACAAAAATCAC 59.426 34.615 0.00 0.00 39.77 3.06
128 129 6.482641 AGCATAAACATTGCACACAAAAATCA 59.517 30.769 0.00 0.00 42.62 2.57
129 130 6.793203 CAGCATAAACATTGCACACAAAAATC 59.207 34.615 0.00 0.00 42.62 2.17
130 131 6.293516 CCAGCATAAACATTGCACACAAAAAT 60.294 34.615 0.00 0.00 42.62 1.82
131 132 5.007430 CCAGCATAAACATTGCACACAAAAA 59.993 36.000 0.00 0.00 42.62 1.94
132 133 4.510711 CCAGCATAAACATTGCACACAAAA 59.489 37.500 0.00 0.00 42.62 2.44
133 134 4.056740 CCAGCATAAACATTGCACACAAA 58.943 39.130 0.00 0.00 42.62 2.83
134 135 3.651206 CCAGCATAAACATTGCACACAA 58.349 40.909 0.00 0.00 42.62 3.33
135 136 2.609984 GCCAGCATAAACATTGCACACA 60.610 45.455 0.00 0.00 42.62 3.72
136 137 1.994779 GCCAGCATAAACATTGCACAC 59.005 47.619 0.00 0.00 42.62 3.82
137 138 1.067000 GGCCAGCATAAACATTGCACA 60.067 47.619 0.00 0.00 42.62 4.57
138 139 1.205417 AGGCCAGCATAAACATTGCAC 59.795 47.619 5.01 0.00 42.62 4.57
139 140 1.559368 AGGCCAGCATAAACATTGCA 58.441 45.000 5.01 0.00 42.62 4.08
140 141 2.678471 AAGGCCAGCATAAACATTGC 57.322 45.000 5.01 0.00 40.45 3.56
141 142 3.068590 CCCTAAGGCCAGCATAAACATTG 59.931 47.826 5.01 0.00 0.00 2.82
142 143 3.299503 CCCTAAGGCCAGCATAAACATT 58.700 45.455 5.01 0.00 0.00 2.71
143 144 2.949447 CCCTAAGGCCAGCATAAACAT 58.051 47.619 5.01 0.00 0.00 2.71
144 145 2.435372 CCCTAAGGCCAGCATAAACA 57.565 50.000 5.01 0.00 0.00 2.83
352 365 6.308282 CGCAAGGTGTTTAGTGTTTGTTTTTA 59.692 34.615 0.00 0.00 0.00 1.52
543 582 4.338682 AGATTGGCTCGACTCGTATAACTT 59.661 41.667 0.00 0.00 0.00 2.66
677 716 3.693085 GCATGGTATCATATTCAGGCCAG 59.307 47.826 5.01 0.00 31.77 4.85
682 721 7.870954 AGCATTTTTGCATGGTATCATATTCAG 59.129 33.333 0.00 0.00 33.02 3.02
683 722 7.728148 AGCATTTTTGCATGGTATCATATTCA 58.272 30.769 0.00 0.00 33.02 2.57
684 723 9.132521 GTAGCATTTTTGCATGGTATCATATTC 57.867 33.333 0.71 0.00 38.91 1.75
685 724 8.090214 GGTAGCATTTTTGCATGGTATCATATT 58.910 33.333 3.27 0.00 38.91 1.28
686 725 7.452501 AGGTAGCATTTTTGCATGGTATCATAT 59.547 33.333 9.49 0.00 39.68 1.78
687 726 6.777091 AGGTAGCATTTTTGCATGGTATCATA 59.223 34.615 9.49 0.00 39.68 2.15
688 727 5.599656 AGGTAGCATTTTTGCATGGTATCAT 59.400 36.000 9.49 0.00 39.68 2.45
689 728 4.955450 AGGTAGCATTTTTGCATGGTATCA 59.045 37.500 9.49 0.00 39.68 2.15
690 729 5.507985 GGAGGTAGCATTTTTGCATGGTATC 60.508 44.000 0.71 0.48 38.91 2.24
691 730 4.342092 GGAGGTAGCATTTTTGCATGGTAT 59.658 41.667 0.71 0.00 38.91 2.73
692 731 3.699038 GGAGGTAGCATTTTTGCATGGTA 59.301 43.478 0.00 0.00 36.32 3.25
693 732 2.497273 GGAGGTAGCATTTTTGCATGGT 59.503 45.455 0.00 0.00 38.44 3.55
694 733 2.480073 CGGAGGTAGCATTTTTGCATGG 60.480 50.000 0.00 0.00 37.25 3.66
695 734 2.801063 CGGAGGTAGCATTTTTGCATG 58.199 47.619 0.33 0.00 37.25 4.06
710 749 6.753107 ACTACAATTAATTTGAACCGGAGG 57.247 37.500 9.46 0.00 46.75 4.30
737 776 8.813951 AGCTGAGTACAAGGTTATACTAAAACT 58.186 33.333 0.00 0.00 31.69 2.66
738 777 8.870879 CAGCTGAGTACAAGGTTATACTAAAAC 58.129 37.037 8.42 0.00 31.69 2.43
739 778 8.038944 CCAGCTGAGTACAAGGTTATACTAAAA 58.961 37.037 17.39 0.00 31.69 1.52
740 779 7.398047 TCCAGCTGAGTACAAGGTTATACTAAA 59.602 37.037 17.39 0.00 31.69 1.85
741 780 6.893554 TCCAGCTGAGTACAAGGTTATACTAA 59.106 38.462 17.39 0.00 31.69 2.24
742 781 6.429151 TCCAGCTGAGTACAAGGTTATACTA 58.571 40.000 17.39 0.00 31.69 1.82
743 782 5.269991 TCCAGCTGAGTACAAGGTTATACT 58.730 41.667 17.39 0.00 34.28 2.12
744 783 5.593010 CTCCAGCTGAGTACAAGGTTATAC 58.407 45.833 17.39 0.00 36.27 1.47
745 784 5.854010 CTCCAGCTGAGTACAAGGTTATA 57.146 43.478 17.39 0.00 36.27 0.98
746 785 4.744795 CTCCAGCTGAGTACAAGGTTAT 57.255 45.455 17.39 0.00 36.27 1.89
758 797 5.050490 GCGAAATAAATCTACTCCAGCTGA 58.950 41.667 17.39 0.00 0.00 4.26
759 798 5.053145 AGCGAAATAAATCTACTCCAGCTG 58.947 41.667 6.78 6.78 0.00 4.24
760 799 5.283457 AGCGAAATAAATCTACTCCAGCT 57.717 39.130 0.00 0.00 0.00 4.24
761 800 7.478520 TTTAGCGAAATAAATCTACTCCAGC 57.521 36.000 0.00 0.00 0.00 4.85
770 809 9.517361 CATGTCGTAGATTTAGCGAAATAAATC 57.483 33.333 4.66 15.09 45.99 2.17
771 810 8.009974 GCATGTCGTAGATTTAGCGAAATAAAT 58.990 33.333 4.66 0.00 40.67 1.40
772 811 7.223971 AGCATGTCGTAGATTTAGCGAAATAAA 59.776 33.333 4.66 0.00 40.67 1.40
773 812 6.700081 AGCATGTCGTAGATTTAGCGAAATAA 59.300 34.615 4.66 0.00 40.67 1.40
774 813 6.213677 AGCATGTCGTAGATTTAGCGAAATA 58.786 36.000 4.66 0.00 40.67 1.40
775 814 5.050490 AGCATGTCGTAGATTTAGCGAAAT 58.950 37.500 4.30 4.30 40.67 2.17
776 815 4.430007 AGCATGTCGTAGATTTAGCGAAA 58.570 39.130 0.00 0.00 40.67 3.46
777 816 4.041740 AGCATGTCGTAGATTTAGCGAA 57.958 40.909 0.00 0.00 40.67 4.70
778 817 3.710326 AGCATGTCGTAGATTTAGCGA 57.290 42.857 0.00 0.00 40.67 4.93
779 818 4.778842 AAAGCATGTCGTAGATTTAGCG 57.221 40.909 0.00 0.00 40.67 4.26
780 819 7.425595 GTGTTAAAAGCATGTCGTAGATTTAGC 59.574 37.037 0.00 0.00 40.67 3.09
791 830 7.884816 TCTACACTAGTGTTAAAAGCATGTC 57.115 36.000 32.15 0.00 41.83 3.06
792 831 7.095774 CGTTCTACACTAGTGTTAAAAGCATGT 60.096 37.037 32.15 6.64 41.83 3.21
797 836 6.862090 AGAGCGTTCTACACTAGTGTTAAAAG 59.138 38.462 32.15 25.29 41.83 2.27
815 854 7.310113 CCTCTCTCCCATTAATATTAGAGCGTT 60.310 40.741 12.19 0.00 32.38 4.84
816 855 6.153680 CCTCTCTCCCATTAATATTAGAGCGT 59.846 42.308 12.19 0.00 32.38 5.07
817 856 6.568869 CCTCTCTCCCATTAATATTAGAGCG 58.431 44.000 12.19 8.27 32.38 5.03
818 857 6.070538 TGCCTCTCTCCCATTAATATTAGAGC 60.071 42.308 12.19 5.95 32.38 4.09
819 858 7.180051 ACTGCCTCTCTCCCATTAATATTAGAG 59.820 40.741 11.31 11.31 33.37 2.43
820 859 7.019388 ACTGCCTCTCTCCCATTAATATTAGA 58.981 38.462 0.00 0.00 0.00 2.10
821 860 7.251321 ACTGCCTCTCTCCCATTAATATTAG 57.749 40.000 0.00 0.00 0.00 1.73
822 861 8.917414 ATACTGCCTCTCTCCCATTAATATTA 57.083 34.615 0.00 0.00 0.00 0.98
823 862 7.821134 ATACTGCCTCTCTCCCATTAATATT 57.179 36.000 0.00 0.00 0.00 1.28
824 863 9.512748 AATATACTGCCTCTCTCCCATTAATAT 57.487 33.333 0.00 0.00 0.00 1.28
825 864 8.917414 AATATACTGCCTCTCTCCCATTAATA 57.083 34.615 0.00 0.00 0.00 0.98
826 865 7.821134 AATATACTGCCTCTCTCCCATTAAT 57.179 36.000 0.00 0.00 0.00 1.40
828 867 6.787458 TCAAATATACTGCCTCTCTCCCATTA 59.213 38.462 0.00 0.00 0.00 1.90
829 868 5.608437 TCAAATATACTGCCTCTCTCCCATT 59.392 40.000 0.00 0.00 0.00 3.16
830 869 5.158141 TCAAATATACTGCCTCTCTCCCAT 58.842 41.667 0.00 0.00 0.00 4.00
831 870 4.556697 TCAAATATACTGCCTCTCTCCCA 58.443 43.478 0.00 0.00 0.00 4.37
832 871 5.247110 TCATCAAATATACTGCCTCTCTCCC 59.753 44.000 0.00 0.00 0.00 4.30
833 872 6.352016 TCATCAAATATACTGCCTCTCTCC 57.648 41.667 0.00 0.00 0.00 3.71
834 873 8.668510 TTTTCATCAAATATACTGCCTCTCTC 57.331 34.615 0.00 0.00 0.00 3.20
869 909 2.893398 CTAGACAGGGGTCCACGC 59.107 66.667 0.00 0.00 45.48 5.34
877 917 2.540515 CACGTAATGTGCTAGACAGGG 58.459 52.381 0.00 0.00 42.70 4.45
901 941 2.268076 CCAACCAGCCGACCCAAAG 61.268 63.158 0.00 0.00 0.00 2.77
904 944 3.636231 CTCCAACCAGCCGACCCA 61.636 66.667 0.00 0.00 0.00 4.51
1134 1174 1.101049 GGAGAGGGTGAGCGAGAGAG 61.101 65.000 0.00 0.00 0.00 3.20
1245 1285 2.099405 CACCATTTTATCCCAACGGCT 58.901 47.619 0.00 0.00 0.00 5.52
1246 1286 1.136110 CCACCATTTTATCCCAACGGC 59.864 52.381 0.00 0.00 0.00 5.68
1284 1324 3.073022 GTTCACGATTTCTGAACGACG 57.927 47.619 7.31 7.67 38.52 5.12
1308 1348 3.844640 AGAAACCATTGGTTAACCAGCT 58.155 40.909 25.74 15.42 46.20 4.24
1315 1355 5.005094 CGGTCCTTTAGAAACCATTGGTTA 58.995 41.667 21.10 3.43 46.20 2.85
1320 1360 2.817844 GCACGGTCCTTTAGAAACCATT 59.182 45.455 0.00 0.00 32.35 3.16
1328 1368 1.787847 CGCAAGCACGGTCCTTTAG 59.212 57.895 0.00 0.00 0.00 1.85
1410 1450 7.485418 AGTTCAAACGACATGTATTGTAACA 57.515 32.000 20.27 0.00 39.18 2.41
1425 1465 0.243636 GCCCATGGGAAGTTCAAACG 59.756 55.000 36.00 3.15 37.50 3.60
1442 1482 3.360340 GTGTGCTCAGTGCCAGCC 61.360 66.667 1.66 0.00 42.00 4.85
1451 1491 0.394216 ACAAACAGCTGGTGTGCTCA 60.394 50.000 20.75 0.00 41.98 4.26
1479 1519 2.234661 CCAGAGCTCATACTCCACACAA 59.765 50.000 17.77 0.00 37.39 3.33
1501 1541 3.017442 CACCTCGAGTCCTAATCACTGA 58.983 50.000 12.31 0.00 0.00 3.41
1508 1548 0.888619 CACTGCACCTCGAGTCCTAA 59.111 55.000 12.31 0.00 0.00 2.69
1517 1557 3.681897 CAGTTCATAGAACACTGCACCTC 59.318 47.826 11.92 0.00 31.99 3.85
1521 1561 3.402110 CACCAGTTCATAGAACACTGCA 58.598 45.455 11.92 0.00 37.24 4.41
1530 1570 0.327924 TGGCACCCACCAGTTCATAG 59.672 55.000 0.00 0.00 33.75 2.23
1551 1591 5.711976 CCACATTGTGACCTAGAAAGGATTT 59.288 40.000 18.33 0.00 46.70 2.17
1553 1593 4.536090 TCCACATTGTGACCTAGAAAGGAT 59.464 41.667 18.33 0.00 46.70 3.24
1559 1599 3.260884 GGAAGTCCACATTGTGACCTAGA 59.739 47.826 18.33 3.63 35.23 2.43
1590 1630 4.623932 ACAGACAGTAATTCAGGCTGAA 57.376 40.909 30.29 30.29 40.54 3.02
1609 1649 6.405065 GCAAGATGGCAGATTTCTCAATAACA 60.405 38.462 0.00 0.00 0.00 2.41
1641 1681 5.606348 ACTTCTCCCAGTAGATGTTGATC 57.394 43.478 0.00 0.00 31.75 2.92
1659 1708 6.917217 AGATTCAGCTAGTTATGCAACTTC 57.083 37.500 0.00 0.00 42.51 3.01
1689 1738 4.553323 CAGCAAGAAAGTGGGAAATGAAG 58.447 43.478 0.00 0.00 0.00 3.02
1747 1796 7.716998 AGACATTAAATTGACGATAAGAGGCAT 59.283 33.333 0.00 0.00 0.00 4.40
1800 1849 3.133542 TCCTTGTGGACTCTGCATCTATG 59.866 47.826 0.00 0.00 37.46 2.23
1803 1852 1.649321 TCCTTGTGGACTCTGCATCT 58.351 50.000 0.00 0.00 37.46 2.90
1896 1945 7.292319 AGATCCACATCATGTATTGGATTTGA 58.708 34.615 19.21 0.43 46.75 2.69
1909 1958 6.656902 ACAGTAATCACAAGATCCACATCAT 58.343 36.000 0.00 0.00 31.90 2.45
1931 1980 2.031919 GTGCCATCACCACCGACA 59.968 61.111 0.00 0.00 37.24 4.35
2015 2064 6.073003 CCAAAGAACTAACCTCATCAGAACAC 60.073 42.308 0.00 0.00 0.00 3.32
2040 2089 7.639039 TCAATAGATGATTATTGGCAAACGTC 58.361 34.615 3.01 7.48 40.06 4.34
2042 2091 8.745837 GTTTCAATAGATGATTATTGGCAAACG 58.254 33.333 3.01 0.00 40.06 3.60
2044 2093 8.756927 TGGTTTCAATAGATGATTATTGGCAAA 58.243 29.630 3.01 0.00 40.06 3.68
2097 2146 6.587226 GTGCAAAGAAGAACATATGCAAATGA 59.413 34.615 1.58 0.00 44.39 2.57
2151 2200 5.457686 ACCATAAACATACCCATCAAGCAT 58.542 37.500 0.00 0.00 0.00 3.79
2161 2210 7.705214 TGGCGTTATAAAACCATAAACATACC 58.295 34.615 4.04 0.00 31.46 2.73
2168 2217 5.221145 CCTGCATGGCGTTATAAAACCATAA 60.221 40.000 16.38 9.69 40.95 1.90
2183 2232 1.251251 AACTCTTCAACCTGCATGGC 58.749 50.000 0.00 0.00 40.22 4.40
2197 2246 4.636206 GCATCAAATTCCTCGGTTAACTCT 59.364 41.667 5.42 0.00 0.00 3.24
2206 2255 3.190079 TCTTCTCGCATCAAATTCCTCG 58.810 45.455 0.00 0.00 0.00 4.63
2221 2270 4.329462 AAGATATCCGGTGCTTCTTCTC 57.671 45.455 0.00 0.00 0.00 2.87
2258 2307 4.373156 AACATACCTGCTCAAAGTTCCT 57.627 40.909 0.00 0.00 0.00 3.36
2266 2315 2.930887 GCGACAGAAACATACCTGCTCA 60.931 50.000 0.00 0.00 33.90 4.26
2279 2328 2.352814 GCAAGAAGACTAGGCGACAGAA 60.353 50.000 0.00 0.00 0.00 3.02
2280 2329 1.202582 GCAAGAAGACTAGGCGACAGA 59.797 52.381 0.00 0.00 0.00 3.41
2285 2334 2.266554 CTCAAGCAAGAAGACTAGGCG 58.733 52.381 0.00 0.00 33.66 5.52
2304 2353 5.617252 TGTAAGAAAACGAATTGAGACCCT 58.383 37.500 0.00 0.00 0.00 4.34
2340 2389 4.927425 TGTTCCGACTGTATAAAAGCAGAC 59.073 41.667 0.00 0.00 36.62 3.51
2353 2406 6.677913 AGAAATTTGGTAAATGTTCCGACTG 58.322 36.000 0.00 0.00 0.00 3.51
2354 2407 6.894339 AGAAATTTGGTAAATGTTCCGACT 57.106 33.333 0.00 0.00 0.00 4.18
2370 2423 8.166422 AGAGAACGGTAACATTCAAGAAATTT 57.834 30.769 0.00 0.00 0.00 1.82
2472 2525 4.016444 GCTGGGATCCATTTAGTTTCACA 58.984 43.478 15.23 0.00 30.82 3.58
2556 2609 7.148557 GCTCAAAGTCAGTACCTTAATGAGAAC 60.149 40.741 12.52 0.00 32.99 3.01
2638 2691 5.010282 GTCTCCCCATTGCTTCTTTTTCTA 58.990 41.667 0.00 0.00 0.00 2.10
2666 2719 7.552687 ACCGCTTGATCTAGAATTAATCAAACA 59.447 33.333 8.45 0.00 38.54 2.83
2689 2742 1.227823 TGTTGCAACCCTGAGACCG 60.228 57.895 26.14 0.00 0.00 4.79
3038 3091 4.201891 CCAGATCAATAAGCAGTCAAGCAC 60.202 45.833 0.00 0.00 36.85 4.40
3080 3136 9.367444 AGTAGTTTAATGTACTCAAGAATTCCG 57.633 33.333 0.65 0.00 0.00 4.30
3408 3486 5.533482 CCACTATGTCTATTCTGGCAGTAC 58.467 45.833 15.27 7.01 0.00 2.73
3451 3529 5.419542 TGTATTTCAGATCTGTACACCTGC 58.580 41.667 21.92 7.01 0.00 4.85
3597 3675 3.589988 CTCAAGTGGTCTACGCAGAAAT 58.410 45.455 0.00 0.00 30.85 2.17
3693 3771 3.446442 AGACCAAAGATGTCCAATGCT 57.554 42.857 0.00 0.00 33.09 3.79
3696 3774 5.880901 ACACTTAGACCAAAGATGTCCAAT 58.119 37.500 0.00 0.00 33.09 3.16
3720 3798 2.746412 TATGCACCAACGCAGCACCT 62.746 55.000 0.00 0.00 46.99 4.00
3884 3962 3.544048 CGCATACATACCTTGAACGCTTG 60.544 47.826 0.00 0.00 0.00 4.01
3885 3963 2.607635 CGCATACATACCTTGAACGCTT 59.392 45.455 0.00 0.00 0.00 4.68
3990 4068 8.762645 AGGATGTGTCATTTGAGAGAATAGTTA 58.237 33.333 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.