Multiple sequence alignment - TraesCS5B01G184600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G184600 chr5B 100.000 3902 0 0 1 3902 335746197 335750098 0.000000e+00 7206
1 TraesCS5B01G184600 chr5B 94.571 1013 51 2 602 1613 335582049 335583058 0.000000e+00 1563
2 TraesCS5B01G184600 chr5B 94.549 1009 51 2 606 1613 335569881 335570886 0.000000e+00 1555
3 TraesCS5B01G184600 chr5B 94.351 1009 53 2 606 1613 335575579 335576584 0.000000e+00 1544
4 TraesCS5B01G184600 chr5B 92.794 1013 68 3 602 1613 335712689 335713697 0.000000e+00 1461
5 TraesCS5B01G184600 chr5B 97.504 601 15 0 1 601 696486368 696485768 0.000000e+00 1027
6 TraesCS5B01G184600 chr5B 94.444 72 2 2 3612 3682 335749752 335749822 4.120000e-20 110
7 TraesCS5B01G184600 chr5B 94.444 72 2 2 3556 3626 335749808 335749878 4.120000e-20 110
8 TraesCS5B01G184600 chr5D 91.429 2590 117 27 602 3107 294292533 294289965 0.000000e+00 3456
9 TraesCS5B01G184600 chr5D 88.398 181 15 2 3609 3784 294288304 294288125 3.050000e-51 213
10 TraesCS5B01G184600 chr5D 86.957 161 13 7 3473 3626 294288391 294288232 1.440000e-39 174
11 TraesCS5B01G184600 chr5D 89.706 136 13 1 3305 3440 520111706 520111572 5.180000e-39 172
12 TraesCS5B01G184600 chr5D 96.250 80 3 0 3823 3902 223291073 223290994 8.800000e-27 132
13 TraesCS5B01G184600 chr2B 98.835 601 7 0 1 601 461573157 461572557 0.000000e+00 1072
14 TraesCS5B01G184600 chr1B 97.841 602 11 2 1 601 684678069 684678669 0.000000e+00 1038
15 TraesCS5B01G184600 chr1B 97.342 602 14 2 1 601 325972491 325973091 0.000000e+00 1022
16 TraesCS5B01G184600 chr1B 90.152 132 13 0 3309 3440 637393653 637393784 5.180000e-39 172
17 TraesCS5B01G184600 chr1B 94.048 84 4 1 3820 3902 194673972 194673889 4.090000e-25 126
18 TraesCS5B01G184600 chr3B 98.148 594 10 1 1 593 52434114 52434707 0.000000e+00 1035
19 TraesCS5B01G184600 chr3B 93.902 82 4 1 3822 3902 475370664 475370583 5.290000e-24 122
20 TraesCS5B01G184600 chr4A 97.512 603 15 0 1 603 719415509 719416111 0.000000e+00 1031
21 TraesCS5B01G184600 chr6A 97.512 603 13 2 1 601 499837853 499837251 0.000000e+00 1029
22 TraesCS5B01G184600 chr6A 98.630 73 1 0 3830 3902 7831479 7831551 3.160000e-26 130
23 TraesCS5B01G184600 chr1A 97.504 601 15 0 1 601 432878011 432878611 0.000000e+00 1027
24 TraesCS5B01G184600 chr1A 96.203 79 2 1 3825 3902 309738038 309737960 1.140000e-25 128
25 TraesCS5B01G184600 chr3A 97.342 602 15 1 1 601 726547576 726548177 0.000000e+00 1022
26 TraesCS5B01G184600 chr3A 90.370 135 12 1 3306 3440 608737297 608737164 4.010000e-40 176
27 TraesCS5B01G184600 chr4B 91.045 134 11 1 3309 3442 161559819 161559687 3.100000e-41 180
28 TraesCS5B01G184600 chr3D 90.977 133 12 0 3309 3441 597753251 597753383 3.100000e-41 180
29 TraesCS5B01G184600 chr7A 90.840 131 12 0 3310 3440 432148218 432148088 4.010000e-40 176
30 TraesCS5B01G184600 chr7A 89.286 140 13 1 3309 3446 562174660 562174521 1.440000e-39 174
31 TraesCS5B01G184600 chr1D 90.226 133 13 0 3308 3440 418404814 418404946 1.440000e-39 174
32 TraesCS5B01G184600 chr1D 87.755 147 13 3 3298 3442 485095136 485095279 2.410000e-37 167
33 TraesCS5B01G184600 chr6B 98.667 75 1 0 3828 3902 388602657 388602583 2.450000e-27 134
34 TraesCS5B01G184600 chr6B 98.649 74 1 0 3829 3902 518378459 518378386 8.800000e-27 132
35 TraesCS5B01G184600 chr6B 97.368 76 1 1 3827 3902 687744566 687744640 1.140000e-25 128
36 TraesCS5B01G184600 chr2D 96.250 80 2 1 3824 3902 465930320 465930399 3.160000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G184600 chr5B 335746197 335750098 3901 False 2475.333333 7206 96.296 1 3902 3 chr5B.!!$F5 3901
1 TraesCS5B01G184600 chr5B 335582049 335583058 1009 False 1563.000000 1563 94.571 602 1613 1 chr5B.!!$F3 1011
2 TraesCS5B01G184600 chr5B 335569881 335570886 1005 False 1555.000000 1555 94.549 606 1613 1 chr5B.!!$F1 1007
3 TraesCS5B01G184600 chr5B 335575579 335576584 1005 False 1544.000000 1544 94.351 606 1613 1 chr5B.!!$F2 1007
4 TraesCS5B01G184600 chr5B 335712689 335713697 1008 False 1461.000000 1461 92.794 602 1613 1 chr5B.!!$F4 1011
5 TraesCS5B01G184600 chr5B 696485768 696486368 600 True 1027.000000 1027 97.504 1 601 1 chr5B.!!$R1 600
6 TraesCS5B01G184600 chr5D 294288125 294292533 4408 True 1281.000000 3456 88.928 602 3784 3 chr5D.!!$R3 3182
7 TraesCS5B01G184600 chr2B 461572557 461573157 600 True 1072.000000 1072 98.835 1 601 1 chr2B.!!$R1 600
8 TraesCS5B01G184600 chr1B 684678069 684678669 600 False 1038.000000 1038 97.841 1 601 1 chr1B.!!$F3 600
9 TraesCS5B01G184600 chr1B 325972491 325973091 600 False 1022.000000 1022 97.342 1 601 1 chr1B.!!$F1 600
10 TraesCS5B01G184600 chr3B 52434114 52434707 593 False 1035.000000 1035 98.148 1 593 1 chr3B.!!$F1 592
11 TraesCS5B01G184600 chr4A 719415509 719416111 602 False 1031.000000 1031 97.512 1 603 1 chr4A.!!$F1 602
12 TraesCS5B01G184600 chr6A 499837251 499837853 602 True 1029.000000 1029 97.512 1 601 1 chr6A.!!$R1 600
13 TraesCS5B01G184600 chr1A 432878011 432878611 600 False 1027.000000 1027 97.504 1 601 1 chr1A.!!$F1 600
14 TraesCS5B01G184600 chr3A 726547576 726548177 601 False 1022.000000 1022 97.342 1 601 1 chr3A.!!$F1 600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
593 597 0.704076 CCACCAATCCCTTTCTCCCA 59.296 55.0 0.00 0.0 0.0 4.37 F
1683 1752 0.034863 ACTCGGAGTCAGAGGAGGAC 60.035 60.0 22.03 0.0 39.9 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2075 2144 0.033781 TGCAAAATGTGAGGCTTGGC 59.966 50.0 0.00 0.0 0.0 4.52 R
3185 3276 0.101399 CGCGCATCTCCAGTCTAGTT 59.899 55.0 8.75 0.0 0.0 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
567 571 1.061131 CGAGGCTCAAGCAATACAACG 59.939 52.381 15.95 0.00 44.36 4.10
586 590 2.844348 ACGACTATTCCACCAATCCCTT 59.156 45.455 0.00 0.00 0.00 3.95
593 597 0.704076 CCACCAATCCCTTTCTCCCA 59.296 55.000 0.00 0.00 0.00 4.37
661 666 1.543429 CCGAGAAAGTGAAGGGCAGTT 60.543 52.381 0.00 0.00 41.88 3.16
1094 1157 4.271696 ACTACACTGCTTCTAACATGCA 57.728 40.909 0.00 0.00 34.14 3.96
1226 1292 2.837031 GAATCCAAAGGCTGGGCGGA 62.837 60.000 0.70 0.00 46.44 5.54
1227 1293 2.439553 AATCCAAAGGCTGGGCGGAA 62.440 55.000 0.70 0.00 46.44 4.30
1228 1294 2.843912 ATCCAAAGGCTGGGCGGAAG 62.844 60.000 0.70 0.00 46.44 3.46
1247 1313 3.543680 AGTTGATGATTCGAATCCGGT 57.456 42.857 30.16 18.53 34.50 5.28
1262 1328 1.065358 CCGGTCACACATCGTTACAC 58.935 55.000 0.00 0.00 0.00 2.90
1287 1353 7.055378 CAGTTCTTACTAGTAAGGCTCCTAGA 58.945 42.308 32.46 15.30 42.03 2.43
1469 1538 2.016704 GAGTGCACCGTCGACACAG 61.017 63.158 17.16 6.02 36.76 3.66
1501 1570 5.476945 GGTGACACCATCAAAGTAAGGAAAT 59.523 40.000 20.14 0.00 39.72 2.17
1517 1586 6.753107 AAGGAAATTACTGGGTGTTTATCG 57.247 37.500 0.00 0.00 0.00 2.92
1547 1616 3.880490 ACGAGATTACAGAGTGAGCCTAG 59.120 47.826 0.00 0.00 0.00 3.02
1674 1743 1.025041 CATCCATCGACTCGGAGTCA 58.975 55.000 31.17 20.83 45.30 3.41
1675 1744 1.001924 CATCCATCGACTCGGAGTCAG 60.002 57.143 31.17 24.06 45.30 3.51
1676 1745 0.252197 TCCATCGACTCGGAGTCAGA 59.748 55.000 31.17 27.33 45.30 3.27
1677 1746 0.660488 CCATCGACTCGGAGTCAGAG 59.340 60.000 31.17 20.88 45.30 3.35
1678 1747 0.660488 CATCGACTCGGAGTCAGAGG 59.340 60.000 31.17 25.42 45.30 3.69
1679 1748 0.542333 ATCGACTCGGAGTCAGAGGA 59.458 55.000 31.17 22.12 45.30 3.71
1680 1749 0.108089 TCGACTCGGAGTCAGAGGAG 60.108 60.000 31.17 17.39 45.30 3.69
1681 1750 1.092921 CGACTCGGAGTCAGAGGAGG 61.093 65.000 31.17 13.93 45.30 4.30
1682 1751 0.253610 GACTCGGAGTCAGAGGAGGA 59.746 60.000 28.54 0.00 44.45 3.71
1683 1752 0.034863 ACTCGGAGTCAGAGGAGGAC 60.035 60.000 22.03 0.00 39.90 3.85
1684 1753 1.078356 TCGGAGTCAGAGGAGGACG 60.078 63.158 0.00 0.00 40.20 4.79
1685 1754 1.078356 CGGAGTCAGAGGAGGACGA 60.078 63.158 0.00 0.00 40.20 4.20
1686 1755 1.092921 CGGAGTCAGAGGAGGACGAG 61.093 65.000 0.00 0.00 40.20 4.18
1687 1756 0.034863 GGAGTCAGAGGAGGACGAGT 60.035 60.000 0.00 0.00 40.20 4.18
1688 1757 1.375551 GAGTCAGAGGAGGACGAGTC 58.624 60.000 0.00 0.00 40.20 3.36
1749 1818 1.269621 GGCCGATACAACTACTGCGAT 60.270 52.381 0.00 0.00 0.00 4.58
1821 1890 0.808847 GGTTCGGGTCGGTCTATTGC 60.809 60.000 0.00 0.00 0.00 3.56
1836 1905 0.546122 ATTGCGGCTACCTGGATGAA 59.454 50.000 0.00 0.00 0.00 2.57
1947 2016 1.741770 GCTCAGGCATCGGAACGTT 60.742 57.895 0.00 0.00 45.96 3.99
1995 2064 0.600057 GGAAAGGGCTCTTGCTTGTG 59.400 55.000 3.74 0.00 39.59 3.33
2075 2144 2.568623 ACCTGGCAAGAAAGGTACTG 57.431 50.000 0.00 0.00 45.15 2.74
2083 2152 1.068121 AGAAAGGTACTGCCAAGCCT 58.932 50.000 0.00 0.00 40.86 4.58
2084 2153 1.003696 AGAAAGGTACTGCCAAGCCTC 59.996 52.381 0.00 0.00 40.86 4.70
2085 2154 0.771127 AAAGGTACTGCCAAGCCTCA 59.229 50.000 0.00 0.00 40.86 3.86
2086 2155 0.036875 AAGGTACTGCCAAGCCTCAC 59.963 55.000 0.00 0.00 40.86 3.51
2087 2156 1.127567 AGGTACTGCCAAGCCTCACA 61.128 55.000 0.00 0.00 37.18 3.58
2092 2161 1.342174 ACTGCCAAGCCTCACATTTTG 59.658 47.619 0.00 0.00 0.00 2.44
2207 2277 4.960938 TCAGCCATACAATATCTCCACAC 58.039 43.478 0.00 0.00 0.00 3.82
2227 2297 0.238289 GGAGTGCAACCAATGTGTCG 59.762 55.000 6.35 0.00 37.80 4.35
2272 2342 0.926155 CATCATGCTTGACTCGTCGG 59.074 55.000 4.14 0.00 33.85 4.79
2276 2346 0.109086 ATGCTTGACTCGTCGGACAG 60.109 55.000 9.10 7.39 0.00 3.51
2335 2405 1.133513 ACCATGGAGCAGAACCACAAA 60.134 47.619 21.47 0.00 40.36 2.83
2337 2407 2.233271 CATGGAGCAGAACCACAAACT 58.767 47.619 0.00 0.00 40.36 2.66
2349 2419 3.332034 ACCACAAACTACGCAGGTAATC 58.668 45.455 0.00 0.00 0.00 1.75
2397 2467 1.949525 GAGTTTGTGAGCAGCCAGAAA 59.050 47.619 3.12 3.12 0.00 2.52
2421 2491 3.119291 CGGCACAGAATCAGATGTCTAC 58.881 50.000 0.00 0.00 0.00 2.59
2541 2620 0.389948 ACCGCAACTCGATCCTTGAC 60.390 55.000 0.00 0.00 41.67 3.18
2551 2630 1.493950 GATCCTTGACGCCGCAGATG 61.494 60.000 0.00 0.00 0.00 2.90
2555 2634 1.699656 CTTGACGCCGCAGATGGAAG 61.700 60.000 0.00 0.00 0.00 3.46
2560 2639 2.586245 CCGCAGATGGAAGGCTCA 59.414 61.111 0.00 0.00 0.00 4.26
2571 2650 1.168714 GAAGGCTCAGTGGCGATTTT 58.831 50.000 0.00 0.00 46.88 1.82
2591 2670 1.888436 GACGGACACCAGATGGAGCA 61.888 60.000 5.72 0.00 38.94 4.26
2664 2743 0.899720 CCATTGAGCAAGCCATGGTT 59.100 50.000 14.67 3.81 40.59 3.67
2680 2759 1.957186 GTTGCCCTGCGTCGTTGTA 60.957 57.895 0.00 0.00 0.00 2.41
2742 2821 2.124151 ATGCATTGGCCCGACTCC 60.124 61.111 0.00 0.00 40.13 3.85
2751 2830 2.464459 GCCCGACTCCGAGCAAATG 61.464 63.158 0.00 0.00 39.44 2.32
2861 2940 1.474478 TGAGCACTCGTCTCATCTTCC 59.526 52.381 0.00 0.00 35.81 3.46
2881 2960 1.446272 GTACTCGACAGGTGCTGGC 60.446 63.158 0.00 0.00 35.89 4.85
2921 3000 3.293311 ACAGCTTAAACATTGCAGCAG 57.707 42.857 0.00 0.00 34.49 4.24
2968 3047 0.170561 CTCCTCATTTGTGCTGCAGC 59.829 55.000 31.89 31.89 42.50 5.25
2993 3084 5.833131 AGACAAATCTGCCTTTAAGACCAAA 59.167 36.000 0.00 0.00 32.29 3.28
3000 3091 2.963101 GCCTTTAAGACCAAACCAAGGT 59.037 45.455 0.00 0.00 43.46 3.50
3013 3104 2.741145 ACCAAGGTTAACAAAGTGGCA 58.259 42.857 8.10 0.00 0.00 4.92
3026 3117 4.365111 TGGCAGCGGGGCTTCAAT 62.365 61.111 6.54 0.00 43.83 2.57
3037 3128 2.556622 GGGGCTTCAATTTCGACTTGAA 59.443 45.455 17.06 17.06 39.60 2.69
3046 3137 5.239306 TCAATTTCGACTTGAAGATGCAGTT 59.761 36.000 0.00 0.00 37.99 3.16
3051 3142 3.248363 CGACTTGAAGATGCAGTTGTGAA 59.752 43.478 0.00 0.00 0.00 3.18
3074 3165 7.832187 TGAACGAAAGGGATAGGATATTTGTTT 59.168 33.333 0.00 0.00 0.00 2.83
3078 3169 8.560374 CGAAAGGGATAGGATATTTGTTTCTTC 58.440 37.037 0.00 0.00 0.00 2.87
3100 3191 5.604565 TCTGCGATGTGTCATGAGATTATT 58.395 37.500 0.00 0.00 0.00 1.40
3103 3194 7.330208 TCTGCGATGTGTCATGAGATTATTATG 59.670 37.037 0.00 0.00 0.00 1.90
3104 3195 6.930722 TGCGATGTGTCATGAGATTATTATGT 59.069 34.615 0.00 0.00 0.00 2.29
3105 3196 8.087750 TGCGATGTGTCATGAGATTATTATGTA 58.912 33.333 0.00 0.00 0.00 2.29
3144 3235 9.537192 TTTCTGTCGATTATGTATAATTTCCGT 57.463 29.630 0.00 0.00 33.37 4.69
3145 3236 9.537192 TTCTGTCGATTATGTATAATTTCCGTT 57.463 29.630 0.00 0.00 33.37 4.44
3184 3275 6.963049 CGTAGGGTGAATTGTATTATAGGC 57.037 41.667 0.00 0.00 0.00 3.93
3185 3276 6.460781 CGTAGGGTGAATTGTATTATAGGCA 58.539 40.000 0.00 0.00 0.00 4.75
3186 3277 6.932400 CGTAGGGTGAATTGTATTATAGGCAA 59.068 38.462 0.00 0.00 0.00 4.52
3187 3278 7.095355 CGTAGGGTGAATTGTATTATAGGCAAC 60.095 40.741 0.00 0.00 0.00 4.17
3201 3292 1.946745 GGCAACTAGACTGGAGATGC 58.053 55.000 0.00 0.00 40.81 3.91
3202 3293 1.565305 GCAACTAGACTGGAGATGCG 58.435 55.000 0.00 0.00 33.74 4.73
3203 3294 1.565305 CAACTAGACTGGAGATGCGC 58.435 55.000 0.00 0.00 0.00 6.09
3204 3295 0.101399 AACTAGACTGGAGATGCGCG 59.899 55.000 0.00 0.00 0.00 6.86
3206 3297 3.469754 TAGACTGGAGATGCGCGCG 62.470 63.158 28.44 28.44 0.00 6.86
3207 3298 4.854784 GACTGGAGATGCGCGCGA 62.855 66.667 37.18 19.53 0.00 5.87
3209 3300 4.862092 CTGGAGATGCGCGCGAGT 62.862 66.667 37.18 21.48 0.00 4.18
3210 3301 4.435436 TGGAGATGCGCGCGAGTT 62.435 61.111 37.18 17.35 0.00 3.01
3212 3303 4.565704 GAGATGCGCGCGAGTTGC 62.566 66.667 37.18 16.48 41.47 4.17
3222 3313 3.055719 CGAGTTGCCGCACCCATT 61.056 61.111 0.00 0.00 0.00 3.16
3224 3315 1.302383 CGAGTTGCCGCACCCATTAA 61.302 55.000 0.00 0.00 0.00 1.40
3225 3316 0.885196 GAGTTGCCGCACCCATTAAA 59.115 50.000 0.00 0.00 0.00 1.52
3226 3317 1.476488 GAGTTGCCGCACCCATTAAAT 59.524 47.619 0.00 0.00 0.00 1.40
3228 3319 0.108424 TTGCCGCACCCATTAAATGC 60.108 50.000 0.00 0.00 35.96 3.56
3229 3320 1.253593 TGCCGCACCCATTAAATGCA 61.254 50.000 0.00 0.00 39.39 3.96
3230 3321 0.104671 GCCGCACCCATTAAATGCAT 59.895 50.000 0.00 0.00 39.39 3.96
3232 4579 2.203401 CCGCACCCATTAAATGCATTG 58.797 47.619 13.82 0.23 39.39 2.82
3238 4585 4.696402 CACCCATTAAATGCATTGCTTTGT 59.304 37.500 13.82 3.96 0.00 2.83
3240 4587 5.874261 ACCCATTAAATGCATTGCTTTGTAC 59.126 36.000 13.82 0.00 0.00 2.90
3248 4595 3.057386 TGCATTGCTTTGTACTCCATGTG 60.057 43.478 10.49 0.00 0.00 3.21
3250 4597 3.500448 TTGCTTTGTACTCCATGTGGA 57.500 42.857 1.17 1.17 43.08 4.02
3251 4598 2.778299 TGCTTTGTACTCCATGTGGAC 58.222 47.619 0.00 0.00 39.78 4.02
3254 4601 3.758554 GCTTTGTACTCCATGTGGACAAT 59.241 43.478 12.59 0.00 39.78 2.71
3255 4602 4.941263 GCTTTGTACTCCATGTGGACAATA 59.059 41.667 12.59 5.65 39.78 1.90
3258 4605 5.034852 TGTACTCCATGTGGACAATATGG 57.965 43.478 0.00 0.00 39.78 2.74
3259 4606 4.473196 TGTACTCCATGTGGACAATATGGT 59.527 41.667 5.57 0.00 41.61 3.55
3261 4608 4.526970 ACTCCATGTGGACAATATGGTTC 58.473 43.478 5.57 0.00 41.61 3.62
3264 4611 1.745232 TGTGGACAATATGGTTCCGC 58.255 50.000 5.70 5.70 0.00 5.54
3265 4612 1.003696 TGTGGACAATATGGTTCCGCA 59.996 47.619 9.58 9.58 38.47 5.69
3268 4615 3.057174 GTGGACAATATGGTTCCGCAAAA 60.057 43.478 7.16 0.00 0.00 2.44
3269 4616 3.574396 TGGACAATATGGTTCCGCAAAAA 59.426 39.130 0.00 0.00 0.00 1.94
3305 4652 8.782137 ATATGGTTAAAAATATTCAGGTGGCT 57.218 30.769 0.00 0.00 0.00 4.75
3306 4653 6.926630 TGGTTAAAAATATTCAGGTGGCTT 57.073 33.333 0.00 0.00 0.00 4.35
3307 4654 6.930731 TGGTTAAAAATATTCAGGTGGCTTC 58.069 36.000 0.00 0.00 0.00 3.86
3308 4655 6.723977 TGGTTAAAAATATTCAGGTGGCTTCT 59.276 34.615 0.00 0.00 0.00 2.85
3310 4657 8.094548 GGTTAAAAATATTCAGGTGGCTTCTTT 58.905 33.333 0.00 0.00 0.00 2.52
3311 4658 9.489084 GTTAAAAATATTCAGGTGGCTTCTTTT 57.511 29.630 0.00 0.00 0.00 2.27
3364 4711 7.609760 TCAATCATGGTAGTACAATGAACAC 57.390 36.000 21.60 0.00 0.00 3.32
3365 4712 6.597672 TCAATCATGGTAGTACAATGAACACC 59.402 38.462 21.60 0.00 0.00 4.16
3366 4713 5.491323 TCATGGTAGTACAATGAACACCA 57.509 39.130 16.63 0.00 40.15 4.17
3367 4714 5.487433 TCATGGTAGTACAATGAACACCAG 58.513 41.667 16.63 0.00 39.29 4.00
3369 4716 5.554437 TGGTAGTACAATGAACACCAGAA 57.446 39.130 2.06 0.00 32.47 3.02
3370 4717 5.931294 TGGTAGTACAATGAACACCAGAAA 58.069 37.500 2.06 0.00 32.47 2.52
3371 4718 6.539173 TGGTAGTACAATGAACACCAGAAAT 58.461 36.000 2.06 0.00 32.47 2.17
3373 4720 8.158132 TGGTAGTACAATGAACACCAGAAATAA 58.842 33.333 2.06 0.00 32.47 1.40
3374 4721 8.448615 GGTAGTACAATGAACACCAGAAATAAC 58.551 37.037 2.06 0.00 0.00 1.89
3375 4722 8.995220 GTAGTACAATGAACACCAGAAATAACA 58.005 33.333 0.00 0.00 0.00 2.41
3376 4723 8.458573 AGTACAATGAACACCAGAAATAACAA 57.541 30.769 0.00 0.00 0.00 2.83
3377 4724 8.908903 AGTACAATGAACACCAGAAATAACAAA 58.091 29.630 0.00 0.00 0.00 2.83
3402 4749 9.950496 AATATTACATCCAGATTCATAGACCAC 57.050 33.333 0.00 0.00 0.00 4.16
3403 4750 4.696479 ACATCCAGATTCATAGACCACC 57.304 45.455 0.00 0.00 0.00 4.61
3404 4751 4.302067 ACATCCAGATTCATAGACCACCT 58.698 43.478 0.00 0.00 0.00 4.00
3405 4752 5.467738 ACATCCAGATTCATAGACCACCTA 58.532 41.667 0.00 0.00 0.00 3.08
3406 4753 5.541868 ACATCCAGATTCATAGACCACCTAG 59.458 44.000 0.00 0.00 0.00 3.02
3408 4755 3.305676 CCAGATTCATAGACCACCTAGCG 60.306 52.174 0.00 0.00 0.00 4.26
3409 4756 3.570125 CAGATTCATAGACCACCTAGCGA 59.430 47.826 0.00 0.00 0.00 4.93
3410 4757 3.570550 AGATTCATAGACCACCTAGCGAC 59.429 47.826 0.00 0.00 0.00 5.19
3411 4758 1.306148 TCATAGACCACCTAGCGACG 58.694 55.000 0.00 0.00 0.00 5.12
3414 4761 0.251354 TAGACCACCTAGCGACGACT 59.749 55.000 0.00 0.00 0.00 4.18
3415 4762 0.251354 AGACCACCTAGCGACGACTA 59.749 55.000 0.00 0.00 0.00 2.59
3416 4763 0.376502 GACCACCTAGCGACGACTAC 59.623 60.000 0.00 0.00 0.00 2.73
3417 4764 0.321919 ACCACCTAGCGACGACTACA 60.322 55.000 0.00 0.00 0.00 2.74
3418 4765 0.806868 CCACCTAGCGACGACTACAA 59.193 55.000 0.00 0.00 0.00 2.41
3419 4766 1.202154 CCACCTAGCGACGACTACAAG 60.202 57.143 0.00 0.00 0.00 3.16
3420 4767 0.450983 ACCTAGCGACGACTACAAGC 59.549 55.000 0.00 0.00 0.00 4.01
3421 4768 0.450583 CCTAGCGACGACTACAAGCA 59.549 55.000 0.00 0.00 0.00 3.91
3422 4769 1.536149 CTAGCGACGACTACAAGCAC 58.464 55.000 0.00 0.00 0.00 4.40
3423 4770 1.130749 CTAGCGACGACTACAAGCACT 59.869 52.381 0.00 0.00 0.00 4.40
3424 4771 0.387367 AGCGACGACTACAAGCACTG 60.387 55.000 0.00 0.00 0.00 3.66
3425 4772 0.386858 GCGACGACTACAAGCACTGA 60.387 55.000 0.00 0.00 0.00 3.41
3426 4773 1.929038 GCGACGACTACAAGCACTGAA 60.929 52.381 0.00 0.00 0.00 3.02
3427 4774 1.979469 CGACGACTACAAGCACTGAAG 59.021 52.381 0.00 0.00 0.00 3.02
3428 4775 1.721926 GACGACTACAAGCACTGAAGC 59.278 52.381 0.00 0.00 0.00 3.86
3429 4776 0.710567 CGACTACAAGCACTGAAGCG 59.289 55.000 0.00 0.00 40.15 4.68
3430 4777 1.666023 CGACTACAAGCACTGAAGCGA 60.666 52.381 0.00 0.00 40.15 4.93
3431 4778 1.989165 GACTACAAGCACTGAAGCGAG 59.011 52.381 0.00 0.00 40.15 5.03
3432 4779 0.718343 CTACAAGCACTGAAGCGAGC 59.282 55.000 0.00 0.00 40.15 5.03
3435 4782 1.227943 AAGCACTGAAGCGAGCCAA 60.228 52.632 0.00 0.00 40.15 4.52
3436 4783 0.819259 AAGCACTGAAGCGAGCCAAA 60.819 50.000 0.00 0.00 40.15 3.28
3437 4784 1.208614 GCACTGAAGCGAGCCAAAG 59.791 57.895 0.00 0.00 0.00 2.77
3438 4785 1.871772 CACTGAAGCGAGCCAAAGG 59.128 57.895 0.00 0.00 0.00 3.11
3454 4801 3.053896 GGCACCACCTAACGCCAC 61.054 66.667 0.00 0.00 44.25 5.01
3455 4802 3.053896 GCACCACCTAACGCCACC 61.054 66.667 0.00 0.00 0.00 4.61
3457 4804 1.976898 CACCACCTAACGCCACCTA 59.023 57.895 0.00 0.00 0.00 3.08
3458 4805 0.108329 CACCACCTAACGCCACCTAG 60.108 60.000 0.00 0.00 0.00 3.02
3459 4806 1.153429 CCACCTAACGCCACCTAGC 60.153 63.158 0.00 0.00 0.00 3.42
3467 4814 3.506108 GCCACCTAGCGACGACTA 58.494 61.111 0.00 0.00 0.00 2.59
3468 4815 1.063811 GCCACCTAGCGACGACTAC 59.936 63.158 0.00 0.00 0.00 2.73
3469 4816 1.651240 GCCACCTAGCGACGACTACA 61.651 60.000 0.00 0.00 0.00 2.74
3470 4817 1.022735 CCACCTAGCGACGACTACAT 58.977 55.000 0.00 0.00 0.00 2.29
3471 4818 1.404391 CCACCTAGCGACGACTACATT 59.596 52.381 0.00 0.00 0.00 2.71
3472 4819 2.159282 CCACCTAGCGACGACTACATTT 60.159 50.000 0.00 0.00 0.00 2.32
3473 4820 3.508762 CACCTAGCGACGACTACATTTT 58.491 45.455 0.00 0.00 0.00 1.82
3474 4821 3.924686 CACCTAGCGACGACTACATTTTT 59.075 43.478 0.00 0.00 0.00 1.94
3475 4822 5.097529 CACCTAGCGACGACTACATTTTTA 58.902 41.667 0.00 0.00 0.00 1.52
3476 4823 5.229469 CACCTAGCGACGACTACATTTTTAG 59.771 44.000 0.00 0.00 0.00 1.85
3477 4824 5.124457 ACCTAGCGACGACTACATTTTTAGA 59.876 40.000 0.00 0.00 0.00 2.10
3478 4825 6.032094 CCTAGCGACGACTACATTTTTAGAA 58.968 40.000 0.00 0.00 0.00 2.10
3479 4826 5.758570 AGCGACGACTACATTTTTAGAAC 57.241 39.130 0.00 0.00 0.00 3.01
3480 4827 5.467705 AGCGACGACTACATTTTTAGAACT 58.532 37.500 0.00 0.00 0.00 3.01
3481 4828 5.572126 AGCGACGACTACATTTTTAGAACTC 59.428 40.000 0.00 0.00 0.00 3.01
3482 4829 5.344128 GCGACGACTACATTTTTAGAACTCA 59.656 40.000 0.00 0.00 0.00 3.41
3483 4830 6.034683 GCGACGACTACATTTTTAGAACTCAT 59.965 38.462 0.00 0.00 0.00 2.90
3484 4831 7.219535 GCGACGACTACATTTTTAGAACTCATA 59.780 37.037 0.00 0.00 0.00 2.15
3485 4832 8.734933 CGACGACTACATTTTTAGAACTCATAG 58.265 37.037 0.00 0.00 0.00 2.23
3554 4904 5.803020 TTCAATTTTTGTTTCAAACCCCG 57.197 34.783 0.00 0.00 0.00 5.73
3556 4906 5.488341 TCAATTTTTGTTTCAAACCCCGAA 58.512 33.333 0.00 0.00 0.00 4.30
3557 4907 5.351740 TCAATTTTTGTTTCAAACCCCGAAC 59.648 36.000 0.00 0.00 0.00 3.95
3559 4909 3.512033 TTTGTTTCAAACCCCGAACAG 57.488 42.857 0.00 0.00 33.97 3.16
3579 4930 7.860373 CGAACAGTTTTTAATGAAGACCATTCA 59.140 33.333 0.00 0.00 43.96 2.57
3600 4951 6.065976 TCAACATGAATGGTGACCTATCTT 57.934 37.500 6.94 0.00 46.77 2.40
3601 4952 7.194112 TCAACATGAATGGTGACCTATCTTA 57.806 36.000 6.94 0.00 46.77 2.10
3602 4953 7.275183 TCAACATGAATGGTGACCTATCTTAG 58.725 38.462 6.94 0.00 46.77 2.18
3603 4954 7.635750 TCAACATGAATGGTGACCTATCTTAGG 60.636 40.741 6.94 0.00 46.77 2.69
3654 5005 5.698741 TCAACATGAATGGTGACCTATCT 57.301 39.130 6.94 0.00 46.77 1.98
3752 5108 2.436646 CCGACCCAAAGCGCTCAT 60.437 61.111 12.06 0.00 0.00 2.90
3781 5137 1.587054 GTGCGCGATAGGAGGCTAT 59.413 57.895 12.10 0.00 0.00 2.97
3784 5140 1.405463 TGCGCGATAGGAGGCTATATG 59.595 52.381 12.10 0.00 0.00 1.78
3785 5141 1.866063 GCGCGATAGGAGGCTATATGC 60.866 57.143 12.10 0.00 41.94 3.14
3794 5150 2.345991 GCTATATGCCGGCCCGAA 59.654 61.111 26.77 4.98 35.15 4.30
3795 5151 1.078426 GCTATATGCCGGCCCGAAT 60.078 57.895 26.77 13.56 35.15 3.34
3796 5152 1.090052 GCTATATGCCGGCCCGAATC 61.090 60.000 26.77 5.44 35.15 2.52
3797 5153 0.462047 CTATATGCCGGCCCGAATCC 60.462 60.000 26.77 0.00 0.00 3.01
3798 5154 0.907704 TATATGCCGGCCCGAATCCT 60.908 55.000 26.77 4.43 0.00 3.24
3799 5155 0.907704 ATATGCCGGCCCGAATCCTA 60.908 55.000 26.77 0.73 0.00 2.94
3800 5156 1.122632 TATGCCGGCCCGAATCCTAA 61.123 55.000 26.77 0.00 0.00 2.69
3801 5157 2.590859 GCCGGCCCGAATCCTAAC 60.591 66.667 18.11 0.00 0.00 2.34
3802 5158 3.103091 GCCGGCCCGAATCCTAACT 62.103 63.158 18.11 0.00 0.00 2.24
3803 5159 1.751349 GCCGGCCCGAATCCTAACTA 61.751 60.000 18.11 0.00 0.00 2.24
3804 5160 0.754472 CCGGCCCGAATCCTAACTAA 59.246 55.000 3.71 0.00 0.00 2.24
3805 5161 1.346722 CCGGCCCGAATCCTAACTAAT 59.653 52.381 3.71 0.00 0.00 1.73
3806 5162 2.413837 CGGCCCGAATCCTAACTAATG 58.586 52.381 0.00 0.00 0.00 1.90
3807 5163 2.036733 CGGCCCGAATCCTAACTAATGA 59.963 50.000 0.00 0.00 0.00 2.57
3808 5164 3.400255 GGCCCGAATCCTAACTAATGAC 58.600 50.000 0.00 0.00 0.00 3.06
3809 5165 3.400255 GCCCGAATCCTAACTAATGACC 58.600 50.000 0.00 0.00 0.00 4.02
3810 5166 3.650139 CCCGAATCCTAACTAATGACCG 58.350 50.000 0.00 0.00 0.00 4.79
3811 5167 3.069158 CCCGAATCCTAACTAATGACCGT 59.931 47.826 0.00 0.00 0.00 4.83
3812 5168 4.279169 CCCGAATCCTAACTAATGACCGTA 59.721 45.833 0.00 0.00 0.00 4.02
3813 5169 5.218139 CCGAATCCTAACTAATGACCGTAC 58.782 45.833 0.00 0.00 0.00 3.67
3814 5170 5.009410 CCGAATCCTAACTAATGACCGTACT 59.991 44.000 0.00 0.00 0.00 2.73
3815 5171 5.913514 CGAATCCTAACTAATGACCGTACTG 59.086 44.000 0.00 0.00 0.00 2.74
3816 5172 6.238566 CGAATCCTAACTAATGACCGTACTGA 60.239 42.308 0.00 0.00 0.00 3.41
3817 5173 7.521748 CGAATCCTAACTAATGACCGTACTGAT 60.522 40.741 0.00 0.00 0.00 2.90
3818 5174 6.630444 TCCTAACTAATGACCGTACTGATC 57.370 41.667 0.00 0.00 0.00 2.92
3819 5175 5.533903 TCCTAACTAATGACCGTACTGATCC 59.466 44.000 0.00 0.00 0.00 3.36
3820 5176 3.984508 ACTAATGACCGTACTGATCCG 57.015 47.619 0.00 0.00 0.00 4.18
3821 5177 2.034305 ACTAATGACCGTACTGATCCGC 59.966 50.000 0.00 0.00 0.00 5.54
3822 5178 0.104304 AATGACCGTACTGATCCGCC 59.896 55.000 0.00 0.00 0.00 6.13
3823 5179 2.025727 GACCGTACTGATCCGCCG 59.974 66.667 0.00 0.00 0.00 6.46
3824 5180 3.480225 GACCGTACTGATCCGCCGG 62.480 68.421 12.35 12.35 44.06 6.13
3825 5181 4.280494 CCGTACTGATCCGCCGGG 62.280 72.222 1.90 0.00 35.11 5.73
3826 5182 4.280494 CGTACTGATCCGCCGGGG 62.280 72.222 12.43 12.43 37.02 5.73
3827 5183 3.152400 GTACTGATCCGCCGGGGT 61.152 66.667 18.27 0.00 37.00 4.95
3828 5184 2.364579 TACTGATCCGCCGGGGTT 60.365 61.111 18.27 4.18 37.00 4.11
3829 5185 1.076118 TACTGATCCGCCGGGGTTA 60.076 57.895 18.27 5.47 37.00 2.85
3830 5186 0.470456 TACTGATCCGCCGGGGTTAT 60.470 55.000 18.27 10.44 37.00 1.89
3831 5187 0.470456 ACTGATCCGCCGGGGTTATA 60.470 55.000 18.27 0.03 37.00 0.98
3832 5188 0.902531 CTGATCCGCCGGGGTTATAT 59.097 55.000 18.27 5.24 37.00 0.86
3833 5189 1.278127 CTGATCCGCCGGGGTTATATT 59.722 52.381 18.27 0.00 37.00 1.28
3834 5190 1.002659 TGATCCGCCGGGGTTATATTG 59.997 52.381 18.27 0.00 37.00 1.90
3835 5191 1.276989 GATCCGCCGGGGTTATATTGA 59.723 52.381 18.27 5.80 37.00 2.57
3836 5192 1.129917 TCCGCCGGGGTTATATTGAA 58.870 50.000 18.27 0.00 37.00 2.69
3837 5193 1.071071 TCCGCCGGGGTTATATTGAAG 59.929 52.381 18.27 0.00 37.00 3.02
3838 5194 1.519408 CGCCGGGGTTATATTGAAGG 58.481 55.000 11.01 0.00 0.00 3.46
3839 5195 1.071071 CGCCGGGGTTATATTGAAGGA 59.929 52.381 11.01 0.00 0.00 3.36
3840 5196 2.485835 CGCCGGGGTTATATTGAAGGAA 60.486 50.000 11.01 0.00 0.00 3.36
3841 5197 3.558033 GCCGGGGTTATATTGAAGGAAA 58.442 45.455 2.18 0.00 0.00 3.13
3842 5198 4.149598 GCCGGGGTTATATTGAAGGAAAT 58.850 43.478 2.18 0.00 0.00 2.17
3843 5199 5.318630 GCCGGGGTTATATTGAAGGAAATA 58.681 41.667 2.18 0.00 0.00 1.40
3844 5200 5.949952 GCCGGGGTTATATTGAAGGAAATAT 59.050 40.000 2.18 0.00 36.79 1.28
3845 5201 6.127730 GCCGGGGTTATATTGAAGGAAATATG 60.128 42.308 2.18 0.00 35.05 1.78
3846 5202 6.127730 CCGGGGTTATATTGAAGGAAATATGC 60.128 42.308 0.00 0.00 35.05 3.14
3847 5203 6.127730 CGGGGTTATATTGAAGGAAATATGCC 60.128 42.308 0.00 0.00 35.05 4.40
3848 5204 6.154534 GGGGTTATATTGAAGGAAATATGCCC 59.845 42.308 15.61 15.61 41.84 5.36
3849 5205 6.954102 GGGTTATATTGAAGGAAATATGCCCT 59.046 38.462 16.14 0.00 40.84 5.19
3850 5206 8.113462 GGGTTATATTGAAGGAAATATGCCCTA 58.887 37.037 16.14 0.00 40.84 3.53
3851 5207 9.178758 GGTTATATTGAAGGAAATATGCCCTAG 57.821 37.037 0.00 0.00 35.05 3.02
3852 5208 9.959721 GTTATATTGAAGGAAATATGCCCTAGA 57.040 33.333 0.00 0.00 35.05 2.43
3854 5210 4.982241 TGAAGGAAATATGCCCTAGAGG 57.018 45.455 0.00 0.00 39.47 3.69
3870 5226 7.881775 CCCTAGAGGCAATAATAAAGTTGTT 57.118 36.000 0.00 0.00 0.00 2.83
3871 5227 8.974060 CCCTAGAGGCAATAATAAAGTTGTTA 57.026 34.615 0.00 0.00 0.00 2.41
3872 5228 9.574516 CCCTAGAGGCAATAATAAAGTTGTTAT 57.425 33.333 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
567 571 5.117406 AGAAAGGGATTGGTGGAATAGTC 57.883 43.478 0.00 0.00 0.00 2.59
586 590 4.162320 GGTCATGACTGTTAGATGGGAGAA 59.838 45.833 24.50 0.00 0.00 2.87
593 597 3.260884 ACAACCGGTCATGACTGTTAGAT 59.739 43.478 28.57 15.83 35.97 1.98
903 937 6.682861 GCTGAAGTTGGAAAACAAGGTACAAT 60.683 38.462 0.00 0.00 40.38 2.71
915 949 1.270839 CGAGGGAGCTGAAGTTGGAAA 60.271 52.381 0.00 0.00 0.00 3.13
1094 1157 3.009723 CGGCCATGAACAGAAGTAACAT 58.990 45.455 2.24 0.00 0.00 2.71
1226 1292 3.871594 GACCGGATTCGAATCATCAACTT 59.128 43.478 32.92 13.86 39.00 2.66
1227 1293 3.118775 TGACCGGATTCGAATCATCAACT 60.119 43.478 32.92 13.27 39.00 3.16
1228 1294 3.001330 GTGACCGGATTCGAATCATCAAC 59.999 47.826 32.92 21.43 39.00 3.18
1247 1313 4.316205 AGAACTGTGTAACGATGTGTGA 57.684 40.909 0.00 0.00 42.39 3.58
1262 1328 7.055378 TCTAGGAGCCTTACTAGTAAGAACTG 58.945 42.308 34.41 22.19 43.90 3.16
1356 1422 3.044894 AGGAGAAGGGATGTGATTCCTC 58.955 50.000 0.00 0.00 35.97 3.71
1469 1538 3.140325 TGATGGTGTCACCTTTCTTCC 57.860 47.619 22.56 5.26 39.58 3.46
1501 1570 3.537580 GATGGCGATAAACACCCAGTAA 58.462 45.455 0.00 0.00 0.00 2.24
1517 1586 1.337071 TCTGTAATCTCGTCGGATGGC 59.663 52.381 0.00 0.00 0.00 4.40
1547 1616 1.064458 GCGGTAACTCTCGAGCCTC 59.936 63.158 7.81 0.00 0.00 4.70
1651 1720 1.300465 CCGAGTCGATGGATGCTGG 60.300 63.158 15.64 0.00 0.00 4.85
1683 1752 3.827898 GGCCTCAGGACGGACTCG 61.828 72.222 0.00 0.00 43.02 4.18
1684 1753 2.363147 AGGCCTCAGGACGGACTC 60.363 66.667 0.00 0.00 33.56 3.36
1685 1754 2.681778 CAGGCCTCAGGACGGACT 60.682 66.667 0.00 0.00 41.83 3.85
1686 1755 2.680352 TCAGGCCTCAGGACGGAC 60.680 66.667 0.00 0.00 34.63 4.79
1687 1756 2.363018 CTCAGGCCTCAGGACGGA 60.363 66.667 0.00 0.00 34.63 4.69
1688 1757 4.154347 GCTCAGGCCTCAGGACGG 62.154 72.222 5.53 0.00 34.63 4.79
1689 1758 1.754621 TAGCTCAGGCCTCAGGACG 60.755 63.158 5.53 0.00 34.63 4.79
1690 1759 0.686112 AGTAGCTCAGGCCTCAGGAC 60.686 60.000 5.53 0.00 39.73 3.85
1821 1890 0.179073 CCTGTTCATCCAGGTAGCCG 60.179 60.000 0.00 0.00 45.81 5.52
1836 1905 4.722700 GCCACATGACGGCCCTGT 62.723 66.667 16.99 0.00 44.22 4.00
1995 2064 1.661341 CTCCAGGCACAAGCTCATAC 58.339 55.000 0.00 0.00 41.70 2.39
2075 2144 0.033781 TGCAAAATGTGAGGCTTGGC 59.966 50.000 0.00 0.00 0.00 4.52
2083 2152 7.710044 ACATTGTTTCATAACTGCAAAATGTGA 59.290 29.630 0.00 0.00 35.24 3.58
2084 2153 7.853524 ACATTGTTTCATAACTGCAAAATGTG 58.146 30.769 0.00 0.00 35.24 3.21
2085 2154 8.436046 AACATTGTTTCATAACTGCAAAATGT 57.564 26.923 0.00 0.00 35.24 2.71
2092 2161 7.756722 AGCAGATAAACATTGTTTCATAACTGC 59.243 33.333 27.42 27.42 42.74 4.40
2207 2277 0.238289 GACACATTGGTTGCACTCCG 59.762 55.000 0.00 0.00 0.00 4.63
2227 2297 1.440353 GTTTGATGTCGCCGTGCAC 60.440 57.895 6.82 6.82 0.00 4.57
2286 2356 2.824489 GCTAGCCCAAAGTCGCCC 60.824 66.667 2.29 0.00 0.00 6.13
2397 2467 1.086067 CATCTGATTCTGTGCCGCGT 61.086 55.000 4.92 0.00 0.00 6.01
2421 2491 1.000506 AGAAGCACAATGCCAAAGCTG 59.999 47.619 0.00 0.00 46.52 4.24
2492 2571 3.674523 AGACGCGTCTCAGCAGCA 61.675 61.111 34.98 0.00 34.17 4.41
2541 2620 4.845580 AGCCTTCCATCTGCGGCG 62.846 66.667 0.51 0.51 46.85 6.46
2551 2630 0.678048 AAATCGCCACTGAGCCTTCC 60.678 55.000 0.00 0.00 0.00 3.46
2555 2634 0.169009 GTCAAAATCGCCACTGAGCC 59.831 55.000 0.00 0.00 0.00 4.70
2560 2639 0.250124 TGTCCGTCAAAATCGCCACT 60.250 50.000 0.00 0.00 0.00 4.00
2571 2650 1.888436 GCTCCATCTGGTGTCCGTCA 61.888 60.000 0.00 0.00 36.34 4.35
2598 2677 2.258591 CACCAGAGACCCGTCACG 59.741 66.667 0.00 0.00 0.00 4.35
2664 2743 1.225376 CTTTACAACGACGCAGGGCA 61.225 55.000 0.00 0.00 0.00 5.36
2680 2759 2.420022 CCGGCGACTCAAAATCATCTTT 59.580 45.455 9.30 0.00 0.00 2.52
2734 2813 2.464459 GCATTTGCTCGGAGTCGGG 61.464 63.158 6.90 0.00 40.45 5.14
2742 2821 1.135315 CAGGGAACGCATTTGCTCG 59.865 57.895 0.51 0.00 39.32 5.03
2758 2837 1.816961 GCCATATGCCTGTTCCTCCAG 60.817 57.143 0.00 0.00 0.00 3.86
2793 2872 2.042831 GCATGCCGAACTGGAGCTT 61.043 57.895 6.36 0.00 42.00 3.74
2820 2899 4.738252 TCAAGCGTATGATAAACAGTAGCG 59.262 41.667 0.00 0.00 32.89 4.26
2861 2940 1.154016 CAGCACCTGTCGAGTACCG 60.154 63.158 0.00 0.00 40.25 4.02
2921 3000 6.698766 GGATCATTTTCAGAAACCATGCATAC 59.301 38.462 0.00 0.00 0.00 2.39
2927 3006 5.021458 AGCAGGATCATTTTCAGAAACCAT 58.979 37.500 0.00 0.00 0.00 3.55
2930 3009 4.704057 AGGAGCAGGATCATTTTCAGAAAC 59.296 41.667 0.00 0.00 0.00 2.78
2934 3013 3.882444 TGAGGAGCAGGATCATTTTCAG 58.118 45.455 0.00 0.00 0.00 3.02
2968 3047 4.761739 TGGTCTTAAAGGCAGATTTGTCTG 59.238 41.667 0.00 1.17 38.62 3.51
2971 3050 5.221441 GGTTTGGTCTTAAAGGCAGATTTGT 60.221 40.000 0.00 0.00 0.00 2.83
2975 3054 4.112634 TGGTTTGGTCTTAAAGGCAGAT 57.887 40.909 0.00 0.00 0.00 2.90
2986 3077 5.020795 ACTTTGTTAACCTTGGTTTGGTCT 58.979 37.500 10.52 0.00 36.69 3.85
2993 3084 2.693074 CTGCCACTTTGTTAACCTTGGT 59.307 45.455 2.48 0.00 0.00 3.67
3000 3091 1.175983 CCCCGCTGCCACTTTGTTAA 61.176 55.000 0.00 0.00 0.00 2.01
3013 3104 1.002624 TCGAAATTGAAGCCCCGCT 60.003 52.632 0.00 0.00 42.56 5.52
3023 3114 5.039480 ACTGCATCTTCAAGTCGAAATTG 57.961 39.130 5.47 5.47 31.71 2.32
3025 3116 4.516698 ACAACTGCATCTTCAAGTCGAAAT 59.483 37.500 0.00 0.00 31.71 2.17
3026 3117 3.876914 ACAACTGCATCTTCAAGTCGAAA 59.123 39.130 0.00 0.00 31.71 3.46
3037 3128 2.549754 CCTTTCGTTCACAACTGCATCT 59.450 45.455 0.00 0.00 0.00 2.90
3046 3137 6.494666 AATATCCTATCCCTTTCGTTCACA 57.505 37.500 0.00 0.00 0.00 3.58
3051 3142 7.574607 AGAAACAAATATCCTATCCCTTTCGT 58.425 34.615 0.00 0.00 0.00 3.85
3074 3165 2.493278 TCTCATGACACATCGCAGAAGA 59.507 45.455 0.00 0.00 43.58 2.87
3078 3169 5.919272 AATAATCTCATGACACATCGCAG 57.081 39.130 0.00 0.00 0.00 5.18
3118 3209 9.537192 ACGGAAATTATACATAATCGACAGAAA 57.463 29.630 0.00 0.00 32.08 2.52
3119 3210 9.537192 AACGGAAATTATACATAATCGACAGAA 57.463 29.630 0.00 0.00 32.08 3.02
3120 3211 9.537192 AAACGGAAATTATACATAATCGACAGA 57.463 29.630 0.00 0.00 32.08 3.41
3159 3250 5.873164 CCTATAATACAATTCACCCTACGGC 59.127 44.000 0.00 0.00 0.00 5.68
3163 3254 8.041143 AGTTGCCTATAATACAATTCACCCTA 57.959 34.615 0.00 0.00 0.00 3.53
3165 3256 8.154856 TCTAGTTGCCTATAATACAATTCACCC 58.845 37.037 0.00 0.00 0.00 4.61
3169 3260 9.209175 CCAGTCTAGTTGCCTATAATACAATTC 57.791 37.037 0.00 0.00 0.00 2.17
3180 3271 2.695666 GCATCTCCAGTCTAGTTGCCTA 59.304 50.000 0.00 0.00 34.86 3.93
3183 3274 1.565305 CGCATCTCCAGTCTAGTTGC 58.435 55.000 0.00 0.00 36.67 4.17
3184 3275 1.565305 GCGCATCTCCAGTCTAGTTG 58.435 55.000 0.30 0.00 0.00 3.16
3185 3276 0.101399 CGCGCATCTCCAGTCTAGTT 59.899 55.000 8.75 0.00 0.00 2.24
3186 3277 1.730487 CGCGCATCTCCAGTCTAGT 59.270 57.895 8.75 0.00 0.00 2.57
3187 3278 1.659954 GCGCGCATCTCCAGTCTAG 60.660 63.158 29.10 0.00 0.00 2.43
3188 3279 2.413351 GCGCGCATCTCCAGTCTA 59.587 61.111 29.10 0.00 0.00 2.59
3189 3280 4.862092 CGCGCGCATCTCCAGTCT 62.862 66.667 32.61 0.00 0.00 3.24
3191 3282 4.862092 CTCGCGCGCATCTCCAGT 62.862 66.667 32.61 0.00 0.00 4.00
3192 3283 4.862092 ACTCGCGCGCATCTCCAG 62.862 66.667 32.61 18.02 0.00 3.86
3193 3284 4.435436 AACTCGCGCGCATCTCCA 62.435 61.111 32.61 4.63 0.00 3.86
3194 3285 3.918220 CAACTCGCGCGCATCTCC 61.918 66.667 32.61 0.00 0.00 3.71
3195 3286 4.565704 GCAACTCGCGCGCATCTC 62.566 66.667 32.61 10.23 0.00 2.75
3206 3297 0.885196 TTTAATGGGTGCGGCAACTC 59.115 50.000 18.73 8.71 0.00 3.01
3207 3298 1.204467 CATTTAATGGGTGCGGCAACT 59.796 47.619 18.73 0.08 0.00 3.16
3209 3300 0.108424 GCATTTAATGGGTGCGGCAA 60.108 50.000 3.23 0.00 0.00 4.52
3210 3301 1.253593 TGCATTTAATGGGTGCGGCA 61.254 50.000 7.08 0.00 41.61 5.69
3212 3303 2.203401 CAATGCATTTAATGGGTGCGG 58.797 47.619 9.83 0.00 41.61 5.69
3213 3304 1.593933 GCAATGCATTTAATGGGTGCG 59.406 47.619 9.83 0.00 41.61 5.34
3214 3305 2.908916 AGCAATGCATTTAATGGGTGC 58.091 42.857 9.83 8.45 39.26 5.01
3215 3306 4.696402 ACAAAGCAATGCATTTAATGGGTG 59.304 37.500 9.83 4.63 0.00 4.61
3216 3307 4.909001 ACAAAGCAATGCATTTAATGGGT 58.091 34.783 9.83 0.46 0.00 4.51
3217 3308 6.108015 AGTACAAAGCAATGCATTTAATGGG 58.892 36.000 9.83 0.00 0.00 4.00
3218 3309 6.256321 GGAGTACAAAGCAATGCATTTAATGG 59.744 38.462 9.83 0.00 0.00 3.16
3219 3310 6.812656 TGGAGTACAAAGCAATGCATTTAATG 59.187 34.615 9.83 9.18 0.00 1.90
3222 3313 5.973899 TGGAGTACAAAGCAATGCATTTA 57.026 34.783 9.83 0.00 0.00 1.40
3224 3315 4.221262 ACATGGAGTACAAAGCAATGCATT 59.779 37.500 5.99 5.99 0.00 3.56
3225 3316 3.765511 ACATGGAGTACAAAGCAATGCAT 59.234 39.130 8.35 0.00 0.00 3.96
3226 3317 3.057386 CACATGGAGTACAAAGCAATGCA 60.057 43.478 8.35 0.00 0.00 3.96
3228 3319 3.758023 TCCACATGGAGTACAAAGCAATG 59.242 43.478 0.00 0.00 39.78 2.82
3229 3320 3.758554 GTCCACATGGAGTACAAAGCAAT 59.241 43.478 0.00 0.00 46.49 3.56
3230 3321 3.146066 GTCCACATGGAGTACAAAGCAA 58.854 45.455 0.00 0.00 46.49 3.91
3232 4579 2.778299 TGTCCACATGGAGTACAAAGC 58.222 47.619 0.00 0.00 46.49 3.51
3238 4585 5.397447 GGAACCATATTGTCCACATGGAGTA 60.397 44.000 0.00 0.00 46.49 2.59
3240 4587 3.885297 GGAACCATATTGTCCACATGGAG 59.115 47.826 0.00 0.00 46.49 3.86
3248 4595 3.859411 TTTTGCGGAACCATATTGTCC 57.141 42.857 0.00 0.00 0.00 4.02
3279 4626 9.875708 AGCCACCTGAATATTTTTAACCATATA 57.124 29.630 0.00 0.00 0.00 0.86
3281 4628 8.602472 AAGCCACCTGAATATTTTTAACCATA 57.398 30.769 0.00 0.00 0.00 2.74
3283 4630 6.723977 AGAAGCCACCTGAATATTTTTAACCA 59.276 34.615 0.00 0.00 0.00 3.67
3284 4631 7.170393 AGAAGCCACCTGAATATTTTTAACC 57.830 36.000 0.00 0.00 0.00 2.85
3285 4632 9.489084 AAAAGAAGCCACCTGAATATTTTTAAC 57.511 29.630 0.00 0.00 0.00 2.01
3310 4657 3.121019 CGGGTGTTTCCGGCAAAA 58.879 55.556 0.00 0.00 45.78 2.44
3341 4688 6.374053 TGGTGTTCATTGTACTACCATGATTG 59.626 38.462 11.08 0.00 33.60 2.67
3342 4689 6.480763 TGGTGTTCATTGTACTACCATGATT 58.519 36.000 11.08 0.00 33.60 2.57
3344 4691 5.247337 TCTGGTGTTCATTGTACTACCATGA 59.753 40.000 13.74 0.00 37.55 3.07
3345 4692 5.487433 TCTGGTGTTCATTGTACTACCATG 58.513 41.667 13.74 10.21 37.55 3.66
3346 4693 5.755409 TCTGGTGTTCATTGTACTACCAT 57.245 39.130 13.74 0.00 37.55 3.55
3347 4694 5.554437 TTCTGGTGTTCATTGTACTACCA 57.446 39.130 13.12 13.12 36.79 3.25
3348 4695 8.448615 GTTATTTCTGGTGTTCATTGTACTACC 58.551 37.037 0.00 7.56 0.00 3.18
3349 4696 8.995220 TGTTATTTCTGGTGTTCATTGTACTAC 58.005 33.333 0.00 0.00 0.00 2.73
3350 4697 9.562408 TTGTTATTTCTGGTGTTCATTGTACTA 57.438 29.630 0.00 0.00 0.00 1.82
3351 4698 8.458573 TTGTTATTTCTGGTGTTCATTGTACT 57.541 30.769 0.00 0.00 0.00 2.73
3352 4699 9.691362 ATTTGTTATTTCTGGTGTTCATTGTAC 57.309 29.630 0.00 0.00 0.00 2.90
3376 4723 9.950496 GTGGTCTATGAATCTGGATGTAATATT 57.050 33.333 0.00 0.00 0.00 1.28
3377 4724 8.543774 GGTGGTCTATGAATCTGGATGTAATAT 58.456 37.037 0.00 0.00 0.00 1.28
3379 4726 6.560304 AGGTGGTCTATGAATCTGGATGTAAT 59.440 38.462 0.00 0.00 0.00 1.89
3382 4729 4.302067 AGGTGGTCTATGAATCTGGATGT 58.698 43.478 0.00 0.00 0.00 3.06
3383 4730 4.970860 AGGTGGTCTATGAATCTGGATG 57.029 45.455 0.00 0.00 0.00 3.51
3385 4732 3.898123 GCTAGGTGGTCTATGAATCTGGA 59.102 47.826 0.00 0.00 0.00 3.86
3386 4733 3.305676 CGCTAGGTGGTCTATGAATCTGG 60.306 52.174 0.00 0.00 0.00 3.86
3387 4734 3.570125 TCGCTAGGTGGTCTATGAATCTG 59.430 47.826 0.00 0.00 0.00 2.90
3388 4735 3.570550 GTCGCTAGGTGGTCTATGAATCT 59.429 47.826 0.00 0.00 0.00 2.40
3390 4737 2.293677 CGTCGCTAGGTGGTCTATGAAT 59.706 50.000 0.00 0.00 0.00 2.57
3391 4738 1.674441 CGTCGCTAGGTGGTCTATGAA 59.326 52.381 0.00 0.00 0.00 2.57
3392 4739 1.134310 TCGTCGCTAGGTGGTCTATGA 60.134 52.381 0.00 0.00 0.00 2.15
3393 4740 1.002684 GTCGTCGCTAGGTGGTCTATG 60.003 57.143 0.00 0.00 0.00 2.23
3394 4741 1.134159 AGTCGTCGCTAGGTGGTCTAT 60.134 52.381 0.00 0.00 0.00 1.98
3395 4742 0.251354 AGTCGTCGCTAGGTGGTCTA 59.749 55.000 0.00 0.00 0.00 2.59
3396 4743 0.251354 TAGTCGTCGCTAGGTGGTCT 59.749 55.000 0.00 0.00 0.00 3.85
3397 4744 0.376502 GTAGTCGTCGCTAGGTGGTC 59.623 60.000 0.00 0.00 0.00 4.02
3398 4745 0.321919 TGTAGTCGTCGCTAGGTGGT 60.322 55.000 0.00 0.00 0.00 4.16
3400 4747 1.794437 GCTTGTAGTCGTCGCTAGGTG 60.794 57.143 0.00 0.00 0.00 4.00
3402 4749 0.450583 TGCTTGTAGTCGTCGCTAGG 59.549 55.000 0.00 0.00 0.00 3.02
3403 4750 1.130749 AGTGCTTGTAGTCGTCGCTAG 59.869 52.381 0.00 0.00 0.00 3.42
3404 4751 1.135774 CAGTGCTTGTAGTCGTCGCTA 60.136 52.381 0.00 0.00 0.00 4.26
3405 4752 0.387367 CAGTGCTTGTAGTCGTCGCT 60.387 55.000 0.00 0.00 0.00 4.93
3406 4753 0.386858 TCAGTGCTTGTAGTCGTCGC 60.387 55.000 0.00 0.00 0.00 5.19
3408 4755 1.721926 GCTTCAGTGCTTGTAGTCGTC 59.278 52.381 0.00 0.00 0.00 4.20
3409 4756 1.784525 GCTTCAGTGCTTGTAGTCGT 58.215 50.000 0.00 0.00 0.00 4.34
3410 4757 0.710567 CGCTTCAGTGCTTGTAGTCG 59.289 55.000 0.00 0.00 0.00 4.18
3411 4758 1.989165 CTCGCTTCAGTGCTTGTAGTC 59.011 52.381 0.00 0.00 0.00 2.59
3414 4761 0.670546 GGCTCGCTTCAGTGCTTGTA 60.671 55.000 0.00 0.00 0.00 2.41
3415 4762 1.963338 GGCTCGCTTCAGTGCTTGT 60.963 57.895 0.00 0.00 0.00 3.16
3416 4763 1.509644 TTGGCTCGCTTCAGTGCTTG 61.510 55.000 0.00 0.00 0.00 4.01
3417 4764 0.819259 TTTGGCTCGCTTCAGTGCTT 60.819 50.000 0.00 0.00 0.00 3.91
3418 4765 1.227943 TTTGGCTCGCTTCAGTGCT 60.228 52.632 0.00 0.00 0.00 4.40
3419 4766 1.208614 CTTTGGCTCGCTTCAGTGC 59.791 57.895 0.00 0.00 0.00 4.40
3420 4767 1.871772 CCTTTGGCTCGCTTCAGTG 59.128 57.895 0.00 0.00 0.00 3.66
3421 4768 1.968540 GCCTTTGGCTCGCTTCAGT 60.969 57.895 0.73 0.00 46.69 3.41
3422 4769 2.873288 GCCTTTGGCTCGCTTCAG 59.127 61.111 0.73 0.00 46.69 3.02
3438 4785 2.175035 TAGGTGGCGTTAGGTGGTGC 62.175 60.000 0.00 0.00 0.00 5.01
3439 4786 0.108329 CTAGGTGGCGTTAGGTGGTG 60.108 60.000 0.00 0.00 0.00 4.17
3440 4787 1.896122 GCTAGGTGGCGTTAGGTGGT 61.896 60.000 0.00 0.00 0.00 4.16
3441 4788 1.153429 GCTAGGTGGCGTTAGGTGG 60.153 63.158 0.00 0.00 0.00 4.61
3442 4789 4.515404 GCTAGGTGGCGTTAGGTG 57.485 61.111 0.00 0.00 0.00 4.00
3450 4797 1.063811 GTAGTCGTCGCTAGGTGGC 59.936 63.158 0.00 0.00 0.00 5.01
3451 4798 1.022735 ATGTAGTCGTCGCTAGGTGG 58.977 55.000 0.00 0.00 0.00 4.61
3452 4799 2.846039 AATGTAGTCGTCGCTAGGTG 57.154 50.000 0.00 0.00 0.00 4.00
3454 4801 5.575957 TCTAAAAATGTAGTCGTCGCTAGG 58.424 41.667 0.00 0.00 0.00 3.02
3455 4802 6.746364 AGTTCTAAAAATGTAGTCGTCGCTAG 59.254 38.462 0.00 0.00 0.00 3.42
3457 4804 5.467705 AGTTCTAAAAATGTAGTCGTCGCT 58.532 37.500 0.00 0.00 0.00 4.93
3458 4805 5.344128 TGAGTTCTAAAAATGTAGTCGTCGC 59.656 40.000 0.00 0.00 0.00 5.19
3459 4806 6.922980 TGAGTTCTAAAAATGTAGTCGTCG 57.077 37.500 0.00 0.00 0.00 5.12
3460 4807 9.570488 ACTATGAGTTCTAAAAATGTAGTCGTC 57.430 33.333 0.00 0.00 0.00 4.20
3528 4878 7.430793 CGGGGTTTGAAACAAAAATTGAATTTC 59.569 33.333 10.53 0.00 0.00 2.17
3536 4886 4.833390 TGTTCGGGGTTTGAAACAAAAAT 58.167 34.783 10.53 0.00 0.00 1.82
3554 4904 9.528018 TTGAATGGTCTTCATTAAAAACTGTTC 57.472 29.630 0.00 0.00 45.36 3.18
3556 4906 8.474025 TGTTGAATGGTCTTCATTAAAAACTGT 58.526 29.630 0.00 0.00 45.36 3.55
3557 4907 8.870160 TGTTGAATGGTCTTCATTAAAAACTG 57.130 30.769 0.00 0.00 45.36 3.16
3559 4909 9.474920 TCATGTTGAATGGTCTTCATTAAAAAC 57.525 29.630 0.00 0.00 45.36 2.43
3579 4930 6.386927 TCCTAAGATAGGTCACCATTCATGTT 59.613 38.462 0.00 0.00 46.32 2.71
3631 4982 6.065976 AGATAGGTCACCATTCATGTTGAA 57.934 37.500 0.00 0.00 41.09 2.69
3632 4983 5.698741 AGATAGGTCACCATTCATGTTGA 57.301 39.130 0.00 0.00 0.00 3.18
3633 4984 6.484643 CCTAAGATAGGTCACCATTCATGTTG 59.515 42.308 0.00 0.00 41.18 3.33
3634 4985 6.386927 TCCTAAGATAGGTCACCATTCATGTT 59.613 38.462 0.00 0.00 46.32 2.71
3635 4986 5.905331 TCCTAAGATAGGTCACCATTCATGT 59.095 40.000 0.00 0.00 46.32 3.21
3636 4987 6.425210 TCCTAAGATAGGTCACCATTCATG 57.575 41.667 0.00 0.00 46.32 3.07
3637 4988 6.386927 TGTTCCTAAGATAGGTCACCATTCAT 59.613 38.462 0.00 0.00 46.32 2.57
3638 4989 5.724370 TGTTCCTAAGATAGGTCACCATTCA 59.276 40.000 0.00 0.00 46.32 2.57
3639 4990 6.235231 TGTTCCTAAGATAGGTCACCATTC 57.765 41.667 0.00 0.00 46.32 2.67
3640 4991 6.636454 TTGTTCCTAAGATAGGTCACCATT 57.364 37.500 0.00 0.00 46.32 3.16
3641 4992 6.386927 TCATTGTTCCTAAGATAGGTCACCAT 59.613 38.462 0.00 0.00 46.32 3.55
3642 4993 5.724370 TCATTGTTCCTAAGATAGGTCACCA 59.276 40.000 0.00 0.00 46.32 4.17
3643 4994 6.235231 TCATTGTTCCTAAGATAGGTCACC 57.765 41.667 3.49 0.00 46.32 4.02
3644 4995 7.103641 TGTTCATTGTTCCTAAGATAGGTCAC 58.896 38.462 3.49 3.29 46.32 3.67
3645 4996 7.252612 TGTTCATTGTTCCTAAGATAGGTCA 57.747 36.000 3.49 2.64 46.32 4.02
3646 4997 8.738645 AATGTTCATTGTTCCTAAGATAGGTC 57.261 34.615 3.49 0.37 46.32 3.85
3647 4998 9.533831 AAAATGTTCATTGTTCCTAAGATAGGT 57.466 29.630 3.49 0.00 46.32 3.08
3716 5072 3.814268 CCATGGGCTTGGCGAACG 61.814 66.667 2.85 0.00 0.00 3.95
3735 5091 2.436646 ATGAGCGCTTTGGGTCGG 60.437 61.111 13.26 0.00 37.24 4.79
3781 5137 1.122632 TTAGGATTCGGGCCGGCATA 61.123 55.000 30.85 14.73 0.00 3.14
3784 5140 1.751349 TAGTTAGGATTCGGGCCGGC 61.751 60.000 27.98 21.18 0.00 6.13
3785 5141 0.754472 TTAGTTAGGATTCGGGCCGG 59.246 55.000 27.98 7.65 0.00 6.13
3786 5142 2.036733 TCATTAGTTAGGATTCGGGCCG 59.963 50.000 22.51 22.51 0.00 6.13
3787 5143 3.400255 GTCATTAGTTAGGATTCGGGCC 58.600 50.000 0.00 0.00 0.00 5.80
3788 5144 3.400255 GGTCATTAGTTAGGATTCGGGC 58.600 50.000 0.00 0.00 0.00 6.13
3789 5145 3.069158 ACGGTCATTAGTTAGGATTCGGG 59.931 47.826 0.00 0.00 0.00 5.14
3790 5146 4.317671 ACGGTCATTAGTTAGGATTCGG 57.682 45.455 0.00 0.00 0.00 4.30
3791 5147 5.913514 CAGTACGGTCATTAGTTAGGATTCG 59.086 44.000 0.00 0.00 0.00 3.34
3792 5148 7.035840 TCAGTACGGTCATTAGTTAGGATTC 57.964 40.000 0.00 0.00 0.00 2.52
3793 5149 7.255871 GGATCAGTACGGTCATTAGTTAGGATT 60.256 40.741 0.00 0.00 0.00 3.01
3794 5150 6.208994 GGATCAGTACGGTCATTAGTTAGGAT 59.791 42.308 0.00 0.00 0.00 3.24
3795 5151 5.533903 GGATCAGTACGGTCATTAGTTAGGA 59.466 44.000 0.00 0.00 0.00 2.94
3796 5152 5.562307 CGGATCAGTACGGTCATTAGTTAGG 60.562 48.000 0.00 0.00 0.00 2.69
3797 5153 5.450171 CGGATCAGTACGGTCATTAGTTAG 58.550 45.833 0.00 0.00 0.00 2.34
3798 5154 4.261322 GCGGATCAGTACGGTCATTAGTTA 60.261 45.833 0.00 0.00 30.33 2.24
3799 5155 3.490419 GCGGATCAGTACGGTCATTAGTT 60.490 47.826 0.00 0.00 30.33 2.24
3800 5156 2.034305 GCGGATCAGTACGGTCATTAGT 59.966 50.000 0.00 0.00 30.33 2.24
3801 5157 2.607282 GGCGGATCAGTACGGTCATTAG 60.607 54.545 0.00 0.00 30.33 1.73
3802 5158 1.338973 GGCGGATCAGTACGGTCATTA 59.661 52.381 0.00 0.00 30.33 1.90
3803 5159 0.104304 GGCGGATCAGTACGGTCATT 59.896 55.000 0.00 0.00 30.33 2.57
3804 5160 1.740285 GGCGGATCAGTACGGTCAT 59.260 57.895 0.00 0.00 30.33 3.06
3805 5161 2.767445 CGGCGGATCAGTACGGTCA 61.767 63.158 0.00 0.00 30.33 4.02
3806 5162 2.025727 CGGCGGATCAGTACGGTC 59.974 66.667 0.00 0.00 30.33 4.79
3807 5163 3.524606 CCGGCGGATCAGTACGGT 61.525 66.667 24.41 0.00 39.70 4.83
3808 5164 4.280494 CCCGGCGGATCAGTACGG 62.280 72.222 30.79 18.71 43.89 4.02
3809 5165 4.280494 CCCCGGCGGATCAGTACG 62.280 72.222 30.79 7.64 33.78 3.67
3810 5166 1.394266 TAACCCCGGCGGATCAGTAC 61.394 60.000 30.79 0.00 34.64 2.73
3811 5167 0.470456 ATAACCCCGGCGGATCAGTA 60.470 55.000 30.79 12.13 34.64 2.74
3812 5168 0.470456 TATAACCCCGGCGGATCAGT 60.470 55.000 30.79 16.12 34.64 3.41
3813 5169 0.902531 ATATAACCCCGGCGGATCAG 59.097 55.000 30.79 15.41 34.64 2.90
3814 5170 1.002659 CAATATAACCCCGGCGGATCA 59.997 52.381 30.79 9.89 34.64 2.92
3815 5171 1.276989 TCAATATAACCCCGGCGGATC 59.723 52.381 30.79 0.00 34.64 3.36
3816 5172 1.354101 TCAATATAACCCCGGCGGAT 58.646 50.000 30.79 15.69 34.64 4.18
3817 5173 1.071071 CTTCAATATAACCCCGGCGGA 59.929 52.381 30.79 7.71 34.64 5.54
3818 5174 1.519408 CTTCAATATAACCCCGGCGG 58.481 55.000 21.46 21.46 37.81 6.13
3819 5175 1.071071 TCCTTCAATATAACCCCGGCG 59.929 52.381 0.00 0.00 0.00 6.46
3820 5176 2.943036 TCCTTCAATATAACCCCGGC 57.057 50.000 0.00 0.00 0.00 6.13
3821 5177 6.127730 GCATATTTCCTTCAATATAACCCCGG 60.128 42.308 0.00 0.00 29.69 5.73
3822 5178 6.127730 GGCATATTTCCTTCAATATAACCCCG 60.128 42.308 0.00 0.00 29.69 5.73
3823 5179 6.154534 GGGCATATTTCCTTCAATATAACCCC 59.845 42.308 10.20 6.44 37.98 4.95
3824 5180 6.954102 AGGGCATATTTCCTTCAATATAACCC 59.046 38.462 12.08 12.08 40.80 4.11
3825 5181 9.178758 CTAGGGCATATTTCCTTCAATATAACC 57.821 37.037 0.00 0.00 34.75 2.85
3826 5182 9.959721 TCTAGGGCATATTTCCTTCAATATAAC 57.040 33.333 0.00 0.00 34.75 1.89
3828 5184 8.772250 CCTCTAGGGCATATTTCCTTCAATATA 58.228 37.037 0.00 0.00 34.75 0.86
3829 5185 7.637511 CCTCTAGGGCATATTTCCTTCAATAT 58.362 38.462 0.00 0.00 34.75 1.28
3830 5186 7.020827 CCTCTAGGGCATATTTCCTTCAATA 57.979 40.000 0.00 0.00 34.75 1.90
3831 5187 5.885465 CCTCTAGGGCATATTTCCTTCAAT 58.115 41.667 0.00 0.00 34.75 2.57
3832 5188 5.310409 CCTCTAGGGCATATTTCCTTCAA 57.690 43.478 0.00 0.00 34.75 2.69
3833 5189 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
3846 5202 7.881775 AACAACTTTATTATTGCCTCTAGGG 57.118 36.000 0.00 0.00 35.18 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.