Multiple sequence alignment - TraesCS5B01G184000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G184000 chr5B 100.000 4493 0 0 470 4962 334787337 334782845 0.000000e+00 8298.0
1 TraesCS5B01G184000 chr5B 100.000 113 0 0 1 113 334787806 334787694 5.030000e-50 209.0
2 TraesCS5B01G184000 chr5B 96.226 53 2 0 3718 3770 62027504 62027452 2.460000e-13 87.9
3 TraesCS5B01G184000 chr5D 96.879 2179 54 5 470 2642 293368114 293365944 0.000000e+00 3635.0
4 TraesCS5B01G184000 chr5D 95.544 1885 65 9 2859 4732 293365728 293363852 0.000000e+00 2998.0
5 TraesCS5B01G184000 chr5D 93.878 245 15 0 4718 4962 293206264 293206020 2.180000e-98 370.0
6 TraesCS5B01G184000 chr5D 96.460 113 3 1 1 112 293368241 293368129 8.480000e-43 185.0
7 TraesCS5B01G184000 chr5D 96.364 55 2 0 2641 2695 293365784 293365730 1.900000e-14 91.6
8 TraesCS5B01G184000 chr5D 92.453 53 4 0 3718 3770 58502810 58502862 5.330000e-10 76.8
9 TraesCS5B01G184000 chr5A 95.839 2235 72 8 470 2695 386174387 386172165 0.000000e+00 3592.0
10 TraesCS5B01G184000 chr5A 95.798 1523 46 8 2859 4366 386172163 386170644 0.000000e+00 2442.0
11 TraesCS5B01G184000 chr5A 95.238 189 9 0 2678 2866 597329497 597329685 2.900000e-77 300.0
12 TraesCS5B01G184000 chr5A 95.575 113 4 1 1 112 386174514 386174402 3.950000e-41 180.0
13 TraesCS5B01G184000 chr5A 90.000 70 5 2 3702 3770 46710733 46710801 6.840000e-14 89.8
14 TraesCS5B01G184000 chr7B 79.002 581 116 3 3285 3862 683107185 683107762 4.660000e-105 392.0
15 TraesCS5B01G184000 chr7B 76.429 140 31 2 3307 3445 40655463 40655601 1.920000e-09 75.0
16 TraesCS5B01G184000 chr3B 98.324 179 3 0 2684 2862 731267213 731267035 1.040000e-81 315.0
17 TraesCS5B01G184000 chr3B 98.824 170 2 0 2694 2863 783212875 783212706 2.240000e-78 303.0
18 TraesCS5B01G184000 chr3B 98.256 172 3 0 2692 2863 461200406 461200577 8.070000e-78 302.0
19 TraesCS5B01G184000 chr3B 87.654 81 6 3 4885 4962 812786389 812786468 1.900000e-14 91.6
20 TraesCS5B01G184000 chr1A 98.830 171 1 1 2693 2862 526575518 526575688 2.240000e-78 303.0
21 TraesCS5B01G184000 chr1A 73.663 243 49 12 3336 3572 554105169 554105402 4.120000e-11 80.5
22 TraesCS5B01G184000 chr7A 98.256 172 3 0 2689 2860 13105436 13105265 8.070000e-78 302.0
23 TraesCS5B01G184000 chr7A 75.540 139 34 0 3307 3445 91362543 91362681 8.910000e-08 69.4
24 TraesCS5B01G184000 chr2B 97.727 176 3 1 2689 2863 755512961 755513136 8.070000e-78 302.0
25 TraesCS5B01G184000 chr2B 89.024 82 5 3 4884 4962 728189424 728189504 1.140000e-16 99.0
26 TraesCS5B01G184000 chr2B 84.848 66 9 1 3713 3778 793525216 793525152 1.150000e-06 65.8
27 TraesCS5B01G184000 chr2A 97.714 175 2 2 2689 2863 113822464 113822292 2.900000e-77 300.0
28 TraesCS5B01G184000 chr2A 98.256 172 2 1 2693 2864 632622110 632622280 2.900000e-77 300.0
29 TraesCS5B01G184000 chr2A 88.750 80 6 2 4885 4962 17865135 17865213 1.470000e-15 95.3
30 TraesCS5B01G184000 chr7D 76.434 488 109 4 3369 3853 602629234 602629718 4.930000e-65 259.0
31 TraesCS5B01G184000 chr7D 74.704 253 54 9 3323 3569 602748706 602748458 2.440000e-18 104.0
32 TraesCS5B01G184000 chr7D 93.182 44 1 2 3520 3562 89831803 89831845 4.150000e-06 63.9
33 TraesCS5B01G184000 chr4D 88.095 84 8 2 4881 4962 71014092 71014009 1.140000e-16 99.0
34 TraesCS5B01G184000 chr4D 87.342 79 9 1 4885 4962 383871398 383871320 6.840000e-14 89.8
35 TraesCS5B01G184000 chr1B 88.608 79 8 1 4885 4962 388775300 388775222 1.470000e-15 95.3
36 TraesCS5B01G184000 chr4B 86.420 81 8 3 4884 4962 27119858 27119937 8.850000e-13 86.1
37 TraesCS5B01G184000 chr4B 83.117 77 13 0 3708 3784 42134944 42134868 2.480000e-08 71.3
38 TraesCS5B01G184000 chr3D 86.250 80 9 2 4885 4962 308828586 308828665 8.850000e-13 86.1
39 TraesCS5B01G184000 chr3A 94.340 53 3 0 1238 1290 700753276 700753328 1.140000e-11 82.4
40 TraesCS5B01G184000 chr1D 72.963 270 58 14 3309 3572 462336282 462336542 4.120000e-11 80.5
41 TraesCS5B01G184000 chr2D 81.053 95 18 0 3355 3449 9626455 9626361 5.330000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G184000 chr5B 334782845 334787806 4961 True 4253.500000 8298 100.000000 1 4962 2 chr5B.!!$R2 4961
1 TraesCS5B01G184000 chr5D 293363852 293368241 4389 True 1727.400000 3635 96.311750 1 4732 4 chr5D.!!$R2 4731
2 TraesCS5B01G184000 chr5A 386170644 386174514 3870 True 2071.333333 3592 95.737333 1 4366 3 chr5A.!!$R1 4365
3 TraesCS5B01G184000 chr7B 683107185 683107762 577 False 392.000000 392 79.002000 3285 3862 1 chr7B.!!$F2 577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
628 636 2.031245 CACATTAACAAGCCAGCGAACA 60.031 45.455 0.00 0.0 0.00 3.18 F
1186 1201 1.000396 GCCCCTTTCATGGAGCTGT 60.000 57.895 0.00 0.0 0.00 4.40 F
1614 1629 1.008309 GACCGCGGAGATCAGCTAC 60.008 63.158 35.90 5.6 34.89 3.58 F
1829 1844 1.204941 GTCGACATTGCTACCAGGAGT 59.795 52.381 11.55 0.0 0.00 3.85 F
2716 2731 1.558294 ACTCCCTCCGTTCCCAAATAC 59.442 52.381 0.00 0.0 0.00 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1834 1849 0.109342 ACAGTTTCAGGAGGCACAGG 59.891 55.000 0.00 0.00 0.00 4.00 R
2796 2812 1.135199 ACAAGTGACTACATACGGCGG 60.135 52.381 13.24 0.00 0.00 6.13 R
3436 3519 1.379916 CTTGGCTCCATGGTCCACA 59.620 57.895 22.30 11.24 0.00 4.17 R
3655 3741 5.995897 GTCCACCACTTCAAGTATAGTGTTT 59.004 40.000 11.57 0.00 40.06 2.83 R
4714 4807 0.251832 AGGAGAAGGAGAGGTCGCAA 60.252 55.000 0.00 0.00 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.863424 CGCGGTATGGTGGAACATATATC 59.137 47.826 0.00 0.00 44.52 1.63
90 92 4.722700 ACATGGCCGGACCTGCAC 62.723 66.667 13.17 0.22 40.22 4.57
112 114 6.586082 GCACCGAGAAATTGTTTCATGTTAAT 59.414 34.615 5.36 0.00 42.10 1.40
496 498 8.598916 TGGGTGTAAATGTAGTCTGAAGAAATA 58.401 33.333 0.00 0.00 0.00 1.40
583 591 5.082059 CGTCGGAAAATTCTGTTCATTCAG 58.918 41.667 2.14 0.00 35.11 3.02
609 617 4.092237 GGTTGTAACAAAAGTTGGTTGCAC 59.908 41.667 9.82 6.78 38.91 4.57
628 636 2.031245 CACATTAACAAGCCAGCGAACA 60.031 45.455 0.00 0.00 0.00 3.18
754 762 7.633193 TGTTTGTTTGTAGTTTGTCTATGGT 57.367 32.000 0.00 0.00 0.00 3.55
807 821 9.529325 CAATCAGGATATTAGTTTACGTCTTCA 57.471 33.333 0.00 0.00 0.00 3.02
859 873 3.118847 TGGAACATTGTTGCAAGCTTTGA 60.119 39.130 19.74 0.00 0.00 2.69
899 913 5.003804 CAGGCTACCATGTAGAAAACAAGT 58.996 41.667 5.48 0.00 42.70 3.16
943 958 3.242944 GCAAAAGCTTTGGTTTCGTTCTC 59.757 43.478 13.54 0.00 31.82 2.87
948 963 3.312697 AGCTTTGGTTTCGTTCTCTTCAC 59.687 43.478 0.00 0.00 0.00 3.18
951 966 5.676331 GCTTTGGTTTCGTTCTCTTCACTTT 60.676 40.000 0.00 0.00 0.00 2.66
967 982 6.430000 TCTTCACTTTTCCTACCAAATGTAGC 59.570 38.462 0.00 0.00 44.77 3.58
970 985 4.459337 ACTTTTCCTACCAAATGTAGCTGC 59.541 41.667 0.00 0.00 44.77 5.25
1064 1079 5.594926 CTCCTTATTGTTTTCCATCCATGC 58.405 41.667 0.00 0.00 0.00 4.06
1186 1201 1.000396 GCCCCTTTCATGGAGCTGT 60.000 57.895 0.00 0.00 0.00 4.40
1425 1440 4.010349 GGAATCTCGGACTTTTCAATGGT 58.990 43.478 0.00 0.00 0.00 3.55
1492 1507 3.541632 GAGTTTGACACCTTCAGGAACA 58.458 45.455 0.00 0.00 38.94 3.18
1498 1513 2.821969 GACACCTTCAGGAACATGCAAT 59.178 45.455 0.00 0.00 38.94 3.56
1507 1522 1.539388 GGAACATGCAATTGGACGACA 59.461 47.619 7.72 0.00 0.00 4.35
1614 1629 1.008309 GACCGCGGAGATCAGCTAC 60.008 63.158 35.90 5.60 34.89 3.58
1808 1823 3.908103 TCAACCCTAGCAGGTAAGAGTTT 59.092 43.478 2.18 0.00 40.05 2.66
1829 1844 1.204941 GTCGACATTGCTACCAGGAGT 59.795 52.381 11.55 0.00 0.00 3.85
2025 2040 9.813446 GAAGATGAAAATGATAAGGCTGAATTT 57.187 29.630 0.00 0.00 0.00 1.82
2190 2205 2.923655 TGTTGCGATAAAGAAGCTCTCG 59.076 45.455 0.00 0.00 0.00 4.04
2499 2514 9.490379 GAAGAACTAATTGAAGTCTAAGACCAA 57.510 33.333 0.00 0.00 32.18 3.67
2710 2725 2.970640 ACATAATACTCCCTCCGTTCCC 59.029 50.000 0.00 0.00 0.00 3.97
2711 2726 2.852714 TAATACTCCCTCCGTTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
2716 2731 1.558294 ACTCCCTCCGTTCCCAAATAC 59.442 52.381 0.00 0.00 0.00 1.89
2725 2740 4.758165 TCCGTTCCCAAATACTTGTCTTTC 59.242 41.667 0.00 0.00 0.00 2.62
2729 2744 6.092259 CGTTCCCAAATACTTGTCTTTCTAGG 59.908 42.308 0.00 0.00 0.00 3.02
2730 2745 5.497474 TCCCAAATACTTGTCTTTCTAGGC 58.503 41.667 0.00 0.00 0.00 3.93
2745 2760 6.375455 TCTTTCTAGGCATTTCAAATGGACTC 59.625 38.462 12.14 0.00 0.00 3.36
2746 2761 5.178096 TCTAGGCATTTCAAATGGACTCA 57.822 39.130 12.14 0.00 0.00 3.41
2750 2766 4.529377 AGGCATTTCAAATGGACTCAACAT 59.471 37.500 12.14 0.00 0.00 2.71
2798 2814 6.727824 AAGTGTAGATTCACTCATTTTCCG 57.272 37.500 0.00 0.00 46.25 4.30
2809 2825 3.118884 ACTCATTTTCCGCCGTATGTAGT 60.119 43.478 0.00 0.00 0.00 2.73
2837 2853 9.050601 ACTTGTTGAAATCTCTAGAAAGACAAG 57.949 33.333 17.75 17.75 33.18 3.16
2981 3054 2.863809 ACAGAAACATGTGAGAACCCC 58.136 47.619 0.00 0.00 30.46 4.95
3040 3115 4.330074 CCAACACAGCTTTAACCTCGATAG 59.670 45.833 0.00 0.00 0.00 2.08
3517 3603 1.728971 GATCCTGAGCTTGTCAACACG 59.271 52.381 0.00 0.00 33.60 4.49
3655 3741 0.770499 TCTGGGACCTGCACATCAAA 59.230 50.000 0.00 0.00 0.00 2.69
4268 4361 7.987458 CCAGAGTCAAGCTAGGTTGAAATAATA 59.013 37.037 32.72 11.66 38.17 0.98
4424 4517 5.794894 TCCCTGTGAAAACTGATAACTCTC 58.205 41.667 0.00 0.00 0.00 3.20
4449 4542 4.920640 TCTGTTCGATCCAGATCTTACC 57.079 45.455 10.36 0.00 34.12 2.85
4455 4548 5.063017 TCGATCCAGATCTTACCCTTAGT 57.937 43.478 6.12 0.00 35.72 2.24
4458 4551 6.659668 TCGATCCAGATCTTACCCTTAGTATG 59.340 42.308 6.12 0.00 35.72 2.39
4462 4555 7.130099 TCCAGATCTTACCCTTAGTATGAACA 58.870 38.462 0.00 0.00 38.29 3.18
4505 4598 5.049405 AGAGAATTGTTTCGGTTGTGTGATC 60.049 40.000 0.00 0.00 36.93 2.92
4510 4603 4.637276 TGTTTCGGTTGTGTGATCTACAT 58.363 39.130 4.58 0.00 42.24 2.29
4514 4607 3.108881 CGGTTGTGTGATCTACATCTCG 58.891 50.000 4.58 5.73 42.24 4.04
4521 4614 0.726452 GATCTACATCTCGCGGCGAC 60.726 60.000 22.69 4.43 0.00 5.19
4533 4626 4.655527 GGCGACGGTCAGATATGG 57.344 61.111 9.10 0.00 0.00 2.74
4577 4670 3.078097 TCTCTTTCTCTCTCACTGACCG 58.922 50.000 0.00 0.00 0.00 4.79
4636 4729 4.940463 CATTGCCATGGAAATAGGTGAAG 58.060 43.478 18.17 0.00 0.00 3.02
4659 4752 2.567049 GAGACGCGTGGTGCTACT 59.433 61.111 20.70 4.95 43.27 2.57
4660 4753 1.080705 GAGACGCGTGGTGCTACTT 60.081 57.895 20.70 0.00 43.27 2.24
4675 4768 2.050918 CTACTTTCCCTCTCCATCCCC 58.949 57.143 0.00 0.00 0.00 4.81
4714 4807 0.178990 GGTGCAAACCCTCACTCCTT 60.179 55.000 0.00 0.00 33.91 3.36
4715 4808 1.692411 GTGCAAACCCTCACTCCTTT 58.308 50.000 0.00 0.00 0.00 3.11
4719 4812 0.472471 AAACCCTCACTCCTTTGCGA 59.528 50.000 0.00 0.00 0.00 5.10
4729 4822 0.608640 TCCTTTGCGACCTCTCCTTC 59.391 55.000 0.00 0.00 0.00 3.46
4732 4825 0.608640 TTTGCGACCTCTCCTTCTCC 59.391 55.000 0.00 0.00 0.00 3.71
4733 4826 0.251832 TTGCGACCTCTCCTTCTCCT 60.252 55.000 0.00 0.00 0.00 3.69
4734 4827 0.624254 TGCGACCTCTCCTTCTCCTA 59.376 55.000 0.00 0.00 0.00 2.94
4735 4828 1.314730 GCGACCTCTCCTTCTCCTAG 58.685 60.000 0.00 0.00 0.00 3.02
4736 4829 1.409101 GCGACCTCTCCTTCTCCTAGT 60.409 57.143 0.00 0.00 0.00 2.57
4737 4830 2.294074 CGACCTCTCCTTCTCCTAGTG 58.706 57.143 0.00 0.00 0.00 2.74
4738 4831 2.356330 CGACCTCTCCTTCTCCTAGTGT 60.356 54.545 0.00 0.00 0.00 3.55
4739 4832 3.020984 GACCTCTCCTTCTCCTAGTGTG 58.979 54.545 0.00 0.00 0.00 3.82
4740 4833 1.754226 CCTCTCCTTCTCCTAGTGTGC 59.246 57.143 0.00 0.00 0.00 4.57
4741 4834 2.622977 CCTCTCCTTCTCCTAGTGTGCT 60.623 54.545 0.00 0.00 0.00 4.40
4742 4835 3.096092 CTCTCCTTCTCCTAGTGTGCTT 58.904 50.000 0.00 0.00 0.00 3.91
4743 4836 3.511477 TCTCCTTCTCCTAGTGTGCTTT 58.489 45.455 0.00 0.00 0.00 3.51
4744 4837 4.673968 TCTCCTTCTCCTAGTGTGCTTTA 58.326 43.478 0.00 0.00 0.00 1.85
4745 4838 5.084519 TCTCCTTCTCCTAGTGTGCTTTAA 58.915 41.667 0.00 0.00 0.00 1.52
4746 4839 5.542635 TCTCCTTCTCCTAGTGTGCTTTAAA 59.457 40.000 0.00 0.00 0.00 1.52
4747 4840 5.794894 TCCTTCTCCTAGTGTGCTTTAAAG 58.205 41.667 11.02 11.02 0.00 1.85
4748 4841 5.307196 TCCTTCTCCTAGTGTGCTTTAAAGT 59.693 40.000 16.38 0.00 0.00 2.66
4749 4842 5.639931 CCTTCTCCTAGTGTGCTTTAAAGTC 59.360 44.000 16.38 9.40 0.00 3.01
4750 4843 5.148651 TCTCCTAGTGTGCTTTAAAGTCC 57.851 43.478 16.38 7.97 0.00 3.85
4751 4844 4.020485 TCTCCTAGTGTGCTTTAAAGTCCC 60.020 45.833 16.38 5.68 0.00 4.46
4752 4845 3.008704 TCCTAGTGTGCTTTAAAGTCCCC 59.991 47.826 16.38 0.71 0.00 4.81
4753 4846 2.287977 AGTGTGCTTTAAAGTCCCCC 57.712 50.000 16.38 0.34 0.00 5.40
4754 4847 1.780919 AGTGTGCTTTAAAGTCCCCCT 59.219 47.619 16.38 4.34 0.00 4.79
4755 4848 2.983898 AGTGTGCTTTAAAGTCCCCCTA 59.016 45.455 16.38 0.00 0.00 3.53
4756 4849 3.009143 AGTGTGCTTTAAAGTCCCCCTAG 59.991 47.826 16.38 0.00 0.00 3.02
4757 4850 2.983898 TGTGCTTTAAAGTCCCCCTAGT 59.016 45.455 16.38 0.00 0.00 2.57
4758 4851 4.019950 GTGTGCTTTAAAGTCCCCCTAGTA 60.020 45.833 16.38 0.00 0.00 1.82
4759 4852 4.224370 TGTGCTTTAAAGTCCCCCTAGTAG 59.776 45.833 16.38 0.00 0.00 2.57
4760 4853 3.199289 TGCTTTAAAGTCCCCCTAGTAGC 59.801 47.826 16.38 0.00 0.00 3.58
4761 4854 3.433314 GCTTTAAAGTCCCCCTAGTAGCC 60.433 52.174 16.38 0.00 0.00 3.93
4762 4855 3.495186 TTAAAGTCCCCCTAGTAGCCA 57.505 47.619 0.00 0.00 0.00 4.75
4763 4856 2.588925 AAAGTCCCCCTAGTAGCCAT 57.411 50.000 0.00 0.00 0.00 4.40
4764 4857 2.588925 AAGTCCCCCTAGTAGCCATT 57.411 50.000 0.00 0.00 0.00 3.16
4765 4858 3.719368 AAGTCCCCCTAGTAGCCATTA 57.281 47.619 0.00 0.00 0.00 1.90
4766 4859 3.261818 AGTCCCCCTAGTAGCCATTAG 57.738 52.381 0.00 0.00 0.00 1.73
4767 4860 2.158143 AGTCCCCCTAGTAGCCATTAGG 60.158 54.545 0.00 0.00 36.91 2.69
4768 4861 2.158154 TCCCCCTAGTAGCCATTAGGA 58.842 52.381 2.19 0.00 39.02 2.94
4769 4862 2.158204 TCCCCCTAGTAGCCATTAGGAC 60.158 54.545 2.19 0.00 39.02 3.85
4770 4863 2.258109 CCCCTAGTAGCCATTAGGACC 58.742 57.143 2.19 0.00 39.02 4.46
4771 4864 2.427297 CCCCTAGTAGCCATTAGGACCA 60.427 54.545 2.19 0.00 39.02 4.02
4772 4865 3.314693 CCCTAGTAGCCATTAGGACCAA 58.685 50.000 2.19 0.00 39.02 3.67
4773 4866 3.910627 CCCTAGTAGCCATTAGGACCAAT 59.089 47.826 2.19 0.00 39.02 3.16
4774 4867 4.263068 CCCTAGTAGCCATTAGGACCAATG 60.263 50.000 2.19 2.15 39.02 2.82
4775 4868 3.214696 AGTAGCCATTAGGACCAATGC 57.785 47.619 9.79 6.89 35.06 3.56
4776 4869 2.509548 AGTAGCCATTAGGACCAATGCA 59.490 45.455 9.79 0.00 35.06 3.96
4777 4870 1.767759 AGCCATTAGGACCAATGCAC 58.232 50.000 9.79 5.86 35.06 4.57
4778 4871 0.381801 GCCATTAGGACCAATGCACG 59.618 55.000 9.79 0.00 35.06 5.34
4779 4872 2.016604 GCCATTAGGACCAATGCACGA 61.017 52.381 9.79 0.00 35.06 4.35
4780 4873 2.364632 CCATTAGGACCAATGCACGAA 58.635 47.619 9.79 0.00 35.06 3.85
4781 4874 2.752354 CCATTAGGACCAATGCACGAAA 59.248 45.455 9.79 0.00 35.06 3.46
4782 4875 3.427503 CCATTAGGACCAATGCACGAAAC 60.428 47.826 9.79 0.00 35.06 2.78
4783 4876 1.816074 TAGGACCAATGCACGAAACC 58.184 50.000 0.00 0.00 0.00 3.27
4784 4877 1.209127 GGACCAATGCACGAAACCG 59.791 57.895 0.00 0.00 0.00 4.44
4785 4878 1.231958 GGACCAATGCACGAAACCGA 61.232 55.000 0.00 0.00 0.00 4.69
4786 4879 0.110373 GACCAATGCACGAAACCGAC 60.110 55.000 0.00 0.00 0.00 4.79
4787 4880 0.816018 ACCAATGCACGAAACCGACA 60.816 50.000 0.00 0.00 0.00 4.35
4788 4881 0.521291 CCAATGCACGAAACCGACAT 59.479 50.000 0.00 0.00 0.00 3.06
4789 4882 1.465689 CCAATGCACGAAACCGACATC 60.466 52.381 0.00 0.00 31.12 3.06
4790 4883 0.442310 AATGCACGAAACCGACATCG 59.558 50.000 0.00 0.00 44.33 3.84
4791 4884 0.389296 ATGCACGAAACCGACATCGA 60.389 50.000 2.09 0.00 41.43 3.59
4792 4885 1.279527 TGCACGAAACCGACATCGAC 61.280 55.000 2.09 3.67 41.43 4.20
4793 4886 1.007336 GCACGAAACCGACATCGACT 61.007 55.000 2.09 0.00 41.43 4.18
4794 4887 0.708370 CACGAAACCGACATCGACTG 59.292 55.000 2.09 0.00 41.43 3.51
4795 4888 1.007336 ACGAAACCGACATCGACTGC 61.007 55.000 2.09 0.00 41.43 4.40
4796 4889 1.683790 CGAAACCGACATCGACTGCC 61.684 60.000 2.09 0.00 41.43 4.85
4797 4890 0.389948 GAAACCGACATCGACTGCCT 60.390 55.000 2.09 0.00 43.02 4.75
4798 4891 0.389948 AAACCGACATCGACTGCCTC 60.390 55.000 2.09 0.00 43.02 4.70
4799 4892 1.251527 AACCGACATCGACTGCCTCT 61.252 55.000 2.09 0.00 43.02 3.69
4800 4893 0.393944 ACCGACATCGACTGCCTCTA 60.394 55.000 2.09 0.00 43.02 2.43
4801 4894 0.029567 CCGACATCGACTGCCTCTAC 59.970 60.000 2.09 0.00 43.02 2.59
4802 4895 0.733150 CGACATCGACTGCCTCTACA 59.267 55.000 0.00 0.00 43.02 2.74
4803 4896 1.532090 CGACATCGACTGCCTCTACAC 60.532 57.143 0.00 0.00 43.02 2.90
4804 4897 0.818296 ACATCGACTGCCTCTACACC 59.182 55.000 0.00 0.00 0.00 4.16
4805 4898 0.103208 CATCGACTGCCTCTACACCC 59.897 60.000 0.00 0.00 0.00 4.61
4806 4899 1.043673 ATCGACTGCCTCTACACCCC 61.044 60.000 0.00 0.00 0.00 4.95
4807 4900 2.722201 CGACTGCCTCTACACCCCC 61.722 68.421 0.00 0.00 0.00 5.40
4808 4901 1.306226 GACTGCCTCTACACCCCCT 60.306 63.158 0.00 0.00 0.00 4.79
4809 4902 1.306226 ACTGCCTCTACACCCCCTC 60.306 63.158 0.00 0.00 0.00 4.30
4810 4903 2.363795 TGCCTCTACACCCCCTCG 60.364 66.667 0.00 0.00 0.00 4.63
4811 4904 3.851128 GCCTCTACACCCCCTCGC 61.851 72.222 0.00 0.00 0.00 5.03
4812 4905 2.042843 CCTCTACACCCCCTCGCT 60.043 66.667 0.00 0.00 0.00 4.93
4813 4906 2.128507 CCTCTACACCCCCTCGCTC 61.129 68.421 0.00 0.00 0.00 5.03
4814 4907 2.439701 TCTACACCCCCTCGCTCG 60.440 66.667 0.00 0.00 0.00 5.03
4815 4908 2.439701 CTACACCCCCTCGCTCGA 60.440 66.667 0.00 0.00 0.00 4.04
4816 4909 2.036098 TACACCCCCTCGCTCGAA 59.964 61.111 0.00 0.00 0.00 3.71
4817 4910 1.380785 TACACCCCCTCGCTCGAAT 60.381 57.895 0.00 0.00 0.00 3.34
4818 4911 1.389609 TACACCCCCTCGCTCGAATC 61.390 60.000 0.00 0.00 0.00 2.52
4819 4912 2.363795 ACCCCCTCGCTCGAATCA 60.364 61.111 0.00 0.00 0.00 2.57
4820 4913 1.987855 ACCCCCTCGCTCGAATCAA 60.988 57.895 0.00 0.00 0.00 2.57
4821 4914 1.521681 CCCCCTCGCTCGAATCAAC 60.522 63.158 0.00 0.00 0.00 3.18
4822 4915 1.521681 CCCCTCGCTCGAATCAACC 60.522 63.158 0.00 0.00 0.00 3.77
4823 4916 1.517832 CCCTCGCTCGAATCAACCT 59.482 57.895 0.00 0.00 0.00 3.50
4824 4917 0.528684 CCCTCGCTCGAATCAACCTC 60.529 60.000 0.00 0.00 0.00 3.85
4825 4918 0.528684 CCTCGCTCGAATCAACCTCC 60.529 60.000 0.00 0.00 0.00 4.30
4826 4919 0.528684 CTCGCTCGAATCAACCTCCC 60.529 60.000 0.00 0.00 0.00 4.30
4827 4920 1.218047 CGCTCGAATCAACCTCCCA 59.782 57.895 0.00 0.00 0.00 4.37
4828 4921 0.179073 CGCTCGAATCAACCTCCCAT 60.179 55.000 0.00 0.00 0.00 4.00
4829 4922 1.587547 GCTCGAATCAACCTCCCATC 58.412 55.000 0.00 0.00 0.00 3.51
4830 4923 1.134401 GCTCGAATCAACCTCCCATCA 60.134 52.381 0.00 0.00 0.00 3.07
4831 4924 2.555199 CTCGAATCAACCTCCCATCAC 58.445 52.381 0.00 0.00 0.00 3.06
4832 4925 1.209504 TCGAATCAACCTCCCATCACC 59.790 52.381 0.00 0.00 0.00 4.02
4833 4926 1.210478 CGAATCAACCTCCCATCACCT 59.790 52.381 0.00 0.00 0.00 4.00
4834 4927 2.434336 CGAATCAACCTCCCATCACCTA 59.566 50.000 0.00 0.00 0.00 3.08
4835 4928 3.071602 CGAATCAACCTCCCATCACCTAT 59.928 47.826 0.00 0.00 0.00 2.57
4836 4929 4.283467 CGAATCAACCTCCCATCACCTATA 59.717 45.833 0.00 0.00 0.00 1.31
4837 4930 5.221641 CGAATCAACCTCCCATCACCTATAA 60.222 44.000 0.00 0.00 0.00 0.98
4838 4931 6.520742 CGAATCAACCTCCCATCACCTATAAT 60.521 42.308 0.00 0.00 0.00 1.28
4839 4932 7.310423 CGAATCAACCTCCCATCACCTATAATA 60.310 40.741 0.00 0.00 0.00 0.98
4840 4933 6.935240 TCAACCTCCCATCACCTATAATAG 57.065 41.667 0.00 0.00 0.00 1.73
4854 4947 3.778954 ATAATAGGAGCTCCAAGGCAC 57.221 47.619 33.90 5.61 38.89 5.01
4855 4948 0.548510 AATAGGAGCTCCAAGGCACC 59.451 55.000 33.90 5.53 42.00 5.01
4856 4949 1.348775 ATAGGAGCTCCAAGGCACCC 61.349 60.000 33.90 4.71 42.52 4.61
4857 4950 4.432741 GGAGCTCCAAGGCACCCC 62.433 72.222 28.43 0.00 37.06 4.95
4858 4951 3.334054 GAGCTCCAAGGCACCCCT 61.334 66.667 0.87 0.00 45.77 4.79
4859 4952 1.995626 GAGCTCCAAGGCACCCCTA 60.996 63.158 0.87 0.00 41.90 3.53
4860 4953 1.308216 AGCTCCAAGGCACCCCTAT 60.308 57.895 0.00 0.00 41.90 2.57
4861 4954 1.149401 GCTCCAAGGCACCCCTATC 59.851 63.158 0.00 0.00 41.90 2.08
4862 4955 1.348775 GCTCCAAGGCACCCCTATCT 61.349 60.000 0.00 0.00 41.90 1.98
4863 4956 1.216990 CTCCAAGGCACCCCTATCTT 58.783 55.000 0.00 0.00 41.90 2.40
4864 4957 1.566231 CTCCAAGGCACCCCTATCTTT 59.434 52.381 0.00 0.00 41.90 2.52
4865 4958 1.284785 TCCAAGGCACCCCTATCTTTG 59.715 52.381 0.00 0.00 41.90 2.77
4866 4959 1.686115 CCAAGGCACCCCTATCTTTGG 60.686 57.143 0.00 0.00 41.90 3.28
4867 4960 1.005924 CAAGGCACCCCTATCTTTGGT 59.994 52.381 0.00 0.00 41.90 3.67
4868 4961 0.919710 AGGCACCCCTATCTTTGGTC 59.080 55.000 0.00 0.00 40.58 4.02
4869 4962 0.919710 GGCACCCCTATCTTTGGTCT 59.080 55.000 0.00 0.00 0.00 3.85
4870 4963 1.408822 GGCACCCCTATCTTTGGTCTG 60.409 57.143 0.00 0.00 0.00 3.51
4871 4964 2.019156 GCACCCCTATCTTTGGTCTGC 61.019 57.143 0.00 0.00 0.00 4.26
4872 4965 1.561542 CACCCCTATCTTTGGTCTGCT 59.438 52.381 0.00 0.00 0.00 4.24
4873 4966 1.840635 ACCCCTATCTTTGGTCTGCTC 59.159 52.381 0.00 0.00 0.00 4.26
4874 4967 1.141858 CCCCTATCTTTGGTCTGCTCC 59.858 57.143 0.00 0.00 0.00 4.70
4875 4968 2.122768 CCCTATCTTTGGTCTGCTCCT 58.877 52.381 0.00 0.00 0.00 3.69
4876 4969 2.507471 CCCTATCTTTGGTCTGCTCCTT 59.493 50.000 0.00 0.00 0.00 3.36
4877 4970 3.054065 CCCTATCTTTGGTCTGCTCCTTT 60.054 47.826 0.00 0.00 0.00 3.11
4878 4971 4.195416 CCTATCTTTGGTCTGCTCCTTTC 58.805 47.826 0.00 0.00 0.00 2.62
4879 4972 2.568623 TCTTTGGTCTGCTCCTTTCC 57.431 50.000 0.00 0.00 0.00 3.13
4880 4973 1.073923 TCTTTGGTCTGCTCCTTTCCC 59.926 52.381 0.00 0.00 0.00 3.97
4881 4974 0.112412 TTTGGTCTGCTCCTTTCCCC 59.888 55.000 0.00 0.00 0.00 4.81
4882 4975 0.772124 TTGGTCTGCTCCTTTCCCCT 60.772 55.000 0.00 0.00 0.00 4.79
4883 4976 1.201429 TGGTCTGCTCCTTTCCCCTC 61.201 60.000 0.00 0.00 0.00 4.30
4884 4977 0.912006 GGTCTGCTCCTTTCCCCTCT 60.912 60.000 0.00 0.00 0.00 3.69
4885 4978 0.251634 GTCTGCTCCTTTCCCCTCTG 59.748 60.000 0.00 0.00 0.00 3.35
4886 4979 0.178891 TCTGCTCCTTTCCCCTCTGT 60.179 55.000 0.00 0.00 0.00 3.41
4887 4980 0.695347 CTGCTCCTTTCCCCTCTGTT 59.305 55.000 0.00 0.00 0.00 3.16
4888 4981 1.909302 CTGCTCCTTTCCCCTCTGTTA 59.091 52.381 0.00 0.00 0.00 2.41
4889 4982 1.909302 TGCTCCTTTCCCCTCTGTTAG 59.091 52.381 0.00 0.00 0.00 2.34
4890 4983 2.188817 GCTCCTTTCCCCTCTGTTAGA 58.811 52.381 0.00 0.00 0.00 2.10
4891 4984 2.572104 GCTCCTTTCCCCTCTGTTAGAA 59.428 50.000 0.00 0.00 0.00 2.10
4892 4985 3.201045 GCTCCTTTCCCCTCTGTTAGAAT 59.799 47.826 0.00 0.00 0.00 2.40
4893 4986 4.409247 GCTCCTTTCCCCTCTGTTAGAATA 59.591 45.833 0.00 0.00 0.00 1.75
4894 4987 5.104485 GCTCCTTTCCCCTCTGTTAGAATAA 60.104 44.000 0.00 0.00 0.00 1.40
4895 4988 6.409810 GCTCCTTTCCCCTCTGTTAGAATAAT 60.410 42.308 0.00 0.00 0.00 1.28
4896 4989 7.138054 TCCTTTCCCCTCTGTTAGAATAATC 57.862 40.000 0.00 0.00 0.00 1.75
4897 4990 6.909158 TCCTTTCCCCTCTGTTAGAATAATCT 59.091 38.462 0.00 0.00 39.82 2.40
4898 4991 6.995091 CCTTTCCCCTCTGTTAGAATAATCTG 59.005 42.308 0.00 0.00 37.10 2.90
4899 4992 7.147479 CCTTTCCCCTCTGTTAGAATAATCTGA 60.147 40.741 0.00 0.00 37.10 3.27
4900 4993 7.937700 TTCCCCTCTGTTAGAATAATCTGAT 57.062 36.000 0.00 0.00 37.10 2.90
4901 4994 7.308450 TCCCCTCTGTTAGAATAATCTGATG 57.692 40.000 0.00 0.00 37.10 3.07
4902 4995 5.936956 CCCCTCTGTTAGAATAATCTGATGC 59.063 44.000 0.00 0.00 37.10 3.91
4903 4996 5.936956 CCCTCTGTTAGAATAATCTGATGCC 59.063 44.000 0.00 0.00 37.10 4.40
4904 4997 6.464892 CCCTCTGTTAGAATAATCTGATGCCA 60.465 42.308 0.00 0.00 37.10 4.92
4905 4998 7.166851 CCTCTGTTAGAATAATCTGATGCCAT 58.833 38.462 0.00 0.00 37.10 4.40
4906 4999 7.333921 CCTCTGTTAGAATAATCTGATGCCATC 59.666 40.741 0.00 0.00 37.10 3.51
4907 5000 7.738847 TCTGTTAGAATAATCTGATGCCATCA 58.261 34.615 7.26 7.26 37.10 3.07
4908 5001 8.380867 TCTGTTAGAATAATCTGATGCCATCAT 58.619 33.333 8.03 0.00 38.85 2.45
4918 5011 1.931841 GATGCCATCATCGATCATCCG 59.068 52.381 11.21 0.00 39.63 4.18
4919 5012 0.968405 TGCCATCATCGATCATCCGA 59.032 50.000 0.00 0.00 43.16 4.55
4920 5013 1.067354 TGCCATCATCGATCATCCGAG 60.067 52.381 0.00 0.00 42.21 4.63
4921 5014 1.067283 GCCATCATCGATCATCCGAGT 60.067 52.381 0.00 0.00 42.21 4.18
4922 5015 2.164422 GCCATCATCGATCATCCGAGTA 59.836 50.000 0.00 0.00 42.21 2.59
4923 5016 3.181482 GCCATCATCGATCATCCGAGTAT 60.181 47.826 0.00 0.00 42.21 2.12
4924 5017 4.605968 CCATCATCGATCATCCGAGTATC 58.394 47.826 0.00 0.00 42.21 2.24
4925 5018 4.096984 CCATCATCGATCATCCGAGTATCA 59.903 45.833 0.00 0.00 42.21 2.15
4926 5019 5.393461 CCATCATCGATCATCCGAGTATCAA 60.393 44.000 0.00 0.00 42.21 2.57
4927 5020 5.302357 TCATCGATCATCCGAGTATCAAG 57.698 43.478 0.00 0.00 42.21 3.02
4928 5021 3.560902 TCGATCATCCGAGTATCAAGC 57.439 47.619 0.00 0.00 34.19 4.01
4929 5022 2.884639 TCGATCATCCGAGTATCAAGCA 59.115 45.455 0.00 0.00 34.19 3.91
4930 5023 3.317993 TCGATCATCCGAGTATCAAGCAA 59.682 43.478 0.00 0.00 34.19 3.91
4931 5024 3.426859 CGATCATCCGAGTATCAAGCAAC 59.573 47.826 0.00 0.00 33.17 4.17
4932 5025 3.179443 TCATCCGAGTATCAAGCAACC 57.821 47.619 0.00 0.00 33.17 3.77
4933 5026 2.499693 TCATCCGAGTATCAAGCAACCA 59.500 45.455 0.00 0.00 33.17 3.67
4934 5027 2.380084 TCCGAGTATCAAGCAACCAC 57.620 50.000 0.00 0.00 33.17 4.16
4935 5028 1.621317 TCCGAGTATCAAGCAACCACA 59.379 47.619 0.00 0.00 33.17 4.17
4936 5029 2.236146 TCCGAGTATCAAGCAACCACAT 59.764 45.455 0.00 0.00 33.17 3.21
4937 5030 2.352651 CCGAGTATCAAGCAACCACATG 59.647 50.000 0.00 0.00 33.17 3.21
4938 5031 3.261580 CGAGTATCAAGCAACCACATGA 58.738 45.455 0.00 0.00 33.17 3.07
4939 5032 3.308053 CGAGTATCAAGCAACCACATGAG 59.692 47.826 0.00 0.00 33.17 2.90
4940 5033 3.614092 AGTATCAAGCAACCACATGAGG 58.386 45.455 7.74 7.74 0.00 3.86
4941 5034 1.180029 ATCAAGCAACCACATGAGGC 58.820 50.000 9.34 0.22 0.00 4.70
4942 5035 0.178995 TCAAGCAACCACATGAGGCA 60.179 50.000 9.34 0.00 0.00 4.75
4943 5036 0.038892 CAAGCAACCACATGAGGCAC 60.039 55.000 9.34 0.00 0.00 5.01
4944 5037 1.518056 AAGCAACCACATGAGGCACG 61.518 55.000 9.34 0.00 0.00 5.34
4945 5038 1.965930 GCAACCACATGAGGCACGA 60.966 57.895 9.34 0.00 0.00 4.35
4946 5039 1.868997 CAACCACATGAGGCACGAC 59.131 57.895 9.34 0.00 0.00 4.34
4947 5040 0.884259 CAACCACATGAGGCACGACA 60.884 55.000 9.34 0.00 0.00 4.35
4948 5041 0.884704 AACCACATGAGGCACGACAC 60.885 55.000 9.34 0.00 0.00 3.67
4949 5042 2.034879 CCACATGAGGCACGACACC 61.035 63.158 0.00 0.00 0.00 4.16
4950 5043 2.048222 ACATGAGGCACGACACCG 60.048 61.111 0.00 0.00 42.50 4.94
4951 5044 2.261361 CATGAGGCACGACACCGA 59.739 61.111 0.00 0.00 39.50 4.69
4952 5045 1.807165 CATGAGGCACGACACCGAG 60.807 63.158 0.00 0.00 39.50 4.63
4953 5046 1.977009 ATGAGGCACGACACCGAGA 60.977 57.895 0.00 0.00 39.50 4.04
4954 5047 1.323271 ATGAGGCACGACACCGAGAT 61.323 55.000 0.00 0.00 39.50 2.75
4955 5048 1.215647 GAGGCACGACACCGAGATT 59.784 57.895 0.00 0.00 39.50 2.40
4956 5049 0.389948 GAGGCACGACACCGAGATTT 60.390 55.000 0.00 0.00 39.50 2.17
4957 5050 0.670546 AGGCACGACACCGAGATTTG 60.671 55.000 0.00 0.00 39.50 2.32
4958 5051 0.949105 GGCACGACACCGAGATTTGT 60.949 55.000 0.00 0.00 39.50 2.83
4959 5052 0.865769 GCACGACACCGAGATTTGTT 59.134 50.000 0.00 0.00 39.50 2.83
4960 5053 2.063266 GCACGACACCGAGATTTGTTA 58.937 47.619 0.00 0.00 39.50 2.41
4961 5054 2.477375 GCACGACACCGAGATTTGTTAA 59.523 45.455 0.00 0.00 39.50 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 55 2.205022 TGAGCAAGGTCCCTTTCATG 57.795 50.000 0.00 0.00 33.42 3.07
525 533 7.123997 AGACACAGAACATAGTGATCTCAGAAT 59.876 37.037 0.00 0.00 39.03 2.40
583 591 4.118093 ACCAACTTTTGTTACAACCTGC 57.882 40.909 0.00 0.00 41.35 4.85
609 617 2.987413 TGTTCGCTGGCTTGTTAATG 57.013 45.000 0.00 0.00 0.00 1.90
628 636 1.899142 CCCGTTTTCCCATGGACAAAT 59.101 47.619 15.22 0.00 0.00 2.32
754 762 1.545582 GCAGCTGAGCACCCAAATAAA 59.454 47.619 20.43 0.00 0.00 1.40
807 821 4.039124 CCATTTGGCAGGTTTAGAAACTGT 59.961 41.667 7.48 0.00 38.89 3.55
859 873 2.666317 CCTGGACCTTTTCAAACCACT 58.334 47.619 0.00 0.00 0.00 4.00
967 982 1.152567 TTGGTGTTTGGGAGGGCAG 60.153 57.895 0.00 0.00 0.00 4.85
970 985 0.106217 ACTGTTGGTGTTTGGGAGGG 60.106 55.000 0.00 0.00 0.00 4.30
1064 1079 1.630878 AGAGTGAGGTAGCAAAAGGGG 59.369 52.381 0.00 0.00 0.00 4.79
1186 1201 4.680708 GCCTTCACTGATATCGTTCTTGGA 60.681 45.833 0.00 0.00 0.00 3.53
1190 1205 4.184629 GTTGCCTTCACTGATATCGTTCT 58.815 43.478 0.00 0.00 0.00 3.01
1425 1440 3.549827 CGGTTGCATTCTTGTTGTTGCTA 60.550 43.478 0.00 0.00 36.10 3.49
1492 1507 2.819019 TGTCATTGTCGTCCAATTGCAT 59.181 40.909 0.00 0.00 41.93 3.96
1498 1513 2.333688 TGGTTGTCATTGTCGTCCAA 57.666 45.000 0.00 0.00 37.49 3.53
1536 1551 3.017442 TGACACAACCGAAACAATGGAA 58.983 40.909 0.00 0.00 0.00 3.53
1614 1629 5.578336 TGACAATTTCTCTGTGCTATTCTCG 59.422 40.000 0.00 0.00 0.00 4.04
1808 1823 1.204704 CTCCTGGTAGCAATGTCGACA 59.795 52.381 22.48 22.48 0.00 4.35
1829 1844 0.835971 TTCAGGAGGCACAGGCACTA 60.836 55.000 0.00 0.00 43.71 2.74
1831 1846 1.228245 TTTCAGGAGGCACAGGCAC 60.228 57.895 0.00 0.00 43.71 5.01
1832 1847 1.228245 GTTTCAGGAGGCACAGGCA 60.228 57.895 0.00 0.00 43.71 4.75
1833 1848 1.073897 AGTTTCAGGAGGCACAGGC 59.926 57.895 0.00 0.00 40.13 4.85
1834 1849 0.109342 ACAGTTTCAGGAGGCACAGG 59.891 55.000 0.00 0.00 0.00 4.00
1835 1850 1.202687 TCACAGTTTCAGGAGGCACAG 60.203 52.381 0.00 0.00 0.00 3.66
1836 1851 0.836606 TCACAGTTTCAGGAGGCACA 59.163 50.000 0.00 0.00 0.00 4.57
1901 1916 5.403166 CACACCAACACAGAAAATATTGCAG 59.597 40.000 0.00 0.00 0.00 4.41
2190 2205 4.836825 TCCCTTGAACAGATGATTCAGAC 58.163 43.478 0.00 0.00 37.38 3.51
2405 2420 4.871933 AAGAAATTCCGCAAGAAACCAT 57.128 36.364 0.00 0.00 38.21 3.55
2509 2524 7.174413 TCACTGGACTCCAATTATCATTTTGA 58.826 34.615 0.00 0.00 30.80 2.69
2710 2725 8.514594 TGAAATGCCTAGAAAGACAAGTATTTG 58.485 33.333 0.00 0.00 40.24 2.32
2711 2726 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
2716 2731 6.810182 CCATTTGAAATGCCTAGAAAGACAAG 59.190 38.462 12.26 0.00 0.00 3.16
2725 2740 5.183713 TGTTGAGTCCATTTGAAATGCCTAG 59.816 40.000 12.26 0.00 0.00 3.02
2729 2744 5.512788 CGTATGTTGAGTCCATTTGAAATGC 59.487 40.000 12.26 0.23 0.00 3.56
2730 2745 6.029607 CCGTATGTTGAGTCCATTTGAAATG 58.970 40.000 10.84 10.84 0.00 2.32
2788 2804 3.454375 ACTACATACGGCGGAAAATGAG 58.546 45.455 13.24 10.53 0.00 2.90
2796 2812 1.135199 ACAAGTGACTACATACGGCGG 60.135 52.381 13.24 0.00 0.00 6.13
2798 2814 3.581755 TCAACAAGTGACTACATACGGC 58.418 45.455 0.00 0.00 0.00 5.68
2809 2825 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
2837 2853 5.136105 TCTACTCCCTCCGTTCCTAAATAC 58.864 45.833 0.00 0.00 0.00 1.89
2844 2860 1.887854 GCTATCTACTCCCTCCGTTCC 59.112 57.143 0.00 0.00 0.00 3.62
2848 2864 2.156098 GAGTGCTATCTACTCCCTCCG 58.844 57.143 0.00 0.00 38.85 4.63
2981 3054 5.350633 TGCAAATGGTTCACTTTCTCTTTG 58.649 37.500 0.00 0.00 0.00 2.77
3040 3115 9.736023 CTTAATACCAATTTATTGTCCTCTTGC 57.264 33.333 2.13 0.00 36.06 4.01
3133 3208 5.265191 AGACAGAGTGGCAGAGAGTAAATA 58.735 41.667 0.00 0.00 0.00 1.40
3135 3210 3.501349 AGACAGAGTGGCAGAGAGTAAA 58.499 45.455 0.00 0.00 0.00 2.01
3269 3349 2.976185 TGTACCTGTCAATGGAAGGTCA 59.024 45.455 10.34 7.01 43.33 4.02
3436 3519 1.379916 CTTGGCTCCATGGTCCACA 59.620 57.895 22.30 11.24 0.00 4.17
3655 3741 5.995897 GTCCACCACTTCAAGTATAGTGTTT 59.004 40.000 11.57 0.00 40.06 2.83
4222 4314 5.889853 TCTGGGAAATGATGAAATCTTCCAG 59.110 40.000 0.00 0.00 44.94 3.86
4224 4316 5.890419 ACTCTGGGAAATGATGAAATCTTCC 59.110 40.000 0.00 0.00 45.81 3.46
4268 4361 9.715121 CAAGCATATGAAATTGGGCTTAATAAT 57.285 29.630 6.97 0.00 39.36 1.28
4395 4488 8.960591 AGTTATCAGTTTTCACAGGGATTATTG 58.039 33.333 0.00 0.00 0.00 1.90
4407 4500 7.901029 ACAGATCTGAGAGTTATCAGTTTTCA 58.099 34.615 29.27 0.00 45.70 2.69
4478 4571 4.638421 ACACAACCGAAACAATTCTCTCAA 59.362 37.500 0.00 0.00 33.17 3.02
4488 4581 4.061357 TGTAGATCACACAACCGAAACA 57.939 40.909 0.00 0.00 30.04 2.83
4505 4598 2.722548 CGTCGCCGCGAGATGTAG 60.723 66.667 17.42 0.00 36.23 2.74
4514 4607 2.016704 CATATCTGACCGTCGCCGC 61.017 63.158 0.00 0.00 0.00 6.53
4521 4614 2.612972 GGGTATGTGCCATATCTGACCG 60.613 54.545 5.72 0.00 0.00 4.79
4533 4626 0.679960 AAGGGCGAAAGGGTATGTGC 60.680 55.000 0.00 0.00 0.00 4.57
4547 4640 1.484653 GAGAGAAAGAGAGGGAAGGGC 59.515 57.143 0.00 0.00 0.00 5.19
4577 4670 0.321653 ACTGATTTGTGGGCTCCGTC 60.322 55.000 0.00 0.00 0.00 4.79
4600 4693 2.107378 TGGCAATGGTGAGAGGTACAAA 59.893 45.455 0.00 0.00 0.00 2.83
4604 4697 2.715749 CATGGCAATGGTGAGAGGTA 57.284 50.000 0.00 0.00 0.00 3.08
4648 4741 0.608640 AGAGGGAAAGTAGCACCACG 59.391 55.000 0.00 0.00 0.00 4.94
4659 4752 0.691078 CTCGGGGATGGAGAGGGAAA 60.691 60.000 0.00 0.00 33.27 3.13
4660 4753 1.075226 CTCGGGGATGGAGAGGGAA 60.075 63.158 0.00 0.00 33.27 3.97
4688 4781 1.152756 AGGGTTTGCACCTGGACAC 60.153 57.895 0.00 0.00 43.65 3.67
4690 4783 1.150536 TGAGGGTTTGCACCTGGAC 59.849 57.895 0.00 0.00 43.65 4.02
4714 4807 0.251832 AGGAGAAGGAGAGGTCGCAA 60.252 55.000 0.00 0.00 0.00 4.85
4715 4808 0.624254 TAGGAGAAGGAGAGGTCGCA 59.376 55.000 0.00 0.00 0.00 5.10
4719 4812 2.886391 GCACACTAGGAGAAGGAGAGGT 60.886 54.545 0.00 0.00 0.00 3.85
4729 4822 4.254492 GGGACTTTAAAGCACACTAGGAG 58.746 47.826 15.24 0.00 0.00 3.69
4732 4825 3.009143 AGGGGGACTTTAAAGCACACTAG 59.991 47.826 15.24 0.00 0.00 2.57
4733 4826 2.983898 AGGGGGACTTTAAAGCACACTA 59.016 45.455 15.24 0.00 0.00 2.74
4734 4827 1.780919 AGGGGGACTTTAAAGCACACT 59.219 47.619 15.24 12.22 0.00 3.55
4735 4828 2.287977 AGGGGGACTTTAAAGCACAC 57.712 50.000 15.24 10.17 0.00 3.82
4736 4829 2.983898 ACTAGGGGGACTTTAAAGCACA 59.016 45.455 15.24 0.00 0.00 4.57
4737 4830 3.715638 ACTAGGGGGACTTTAAAGCAC 57.284 47.619 15.24 8.95 0.00 4.40
4738 4831 3.199289 GCTACTAGGGGGACTTTAAAGCA 59.801 47.826 15.24 0.00 0.00 3.91
4739 4832 3.433314 GGCTACTAGGGGGACTTTAAAGC 60.433 52.174 15.24 7.95 0.00 3.51
4740 4833 3.778629 TGGCTACTAGGGGGACTTTAAAG 59.221 47.826 13.76 13.76 0.00 1.85
4741 4834 3.805762 TGGCTACTAGGGGGACTTTAAA 58.194 45.455 0.00 0.00 0.00 1.52
4742 4835 3.495186 TGGCTACTAGGGGGACTTTAA 57.505 47.619 0.00 0.00 0.00 1.52
4743 4836 3.719368 ATGGCTACTAGGGGGACTTTA 57.281 47.619 0.00 0.00 0.00 1.85
4744 4837 2.588925 ATGGCTACTAGGGGGACTTT 57.411 50.000 0.00 0.00 0.00 2.66
4745 4838 2.588925 AATGGCTACTAGGGGGACTT 57.411 50.000 0.00 0.00 0.00 3.01
4746 4839 2.158143 CCTAATGGCTACTAGGGGGACT 60.158 54.545 0.00 0.00 32.46 3.85
4747 4840 2.158204 TCCTAATGGCTACTAGGGGGAC 60.158 54.545 4.65 0.00 36.17 4.46
4748 4841 2.158154 TCCTAATGGCTACTAGGGGGA 58.842 52.381 4.65 0.00 36.17 4.81
4749 4842 2.258109 GTCCTAATGGCTACTAGGGGG 58.742 57.143 4.65 0.00 36.17 5.40
4750 4843 2.258109 GGTCCTAATGGCTACTAGGGG 58.742 57.143 4.65 0.00 36.17 4.79
4751 4844 2.972348 TGGTCCTAATGGCTACTAGGG 58.028 52.381 4.65 0.00 36.17 3.53
4752 4845 4.804261 GCATTGGTCCTAATGGCTACTAGG 60.804 50.000 0.00 0.00 38.25 3.02
4753 4846 4.202357 TGCATTGGTCCTAATGGCTACTAG 60.202 45.833 12.91 0.00 38.25 2.57
4754 4847 3.714280 TGCATTGGTCCTAATGGCTACTA 59.286 43.478 12.91 0.00 38.25 1.82
4755 4848 2.509548 TGCATTGGTCCTAATGGCTACT 59.490 45.455 12.91 0.00 38.25 2.57
4756 4849 2.618709 GTGCATTGGTCCTAATGGCTAC 59.381 50.000 12.91 1.78 38.25 3.58
4757 4850 2.744823 CGTGCATTGGTCCTAATGGCTA 60.745 50.000 12.91 0.00 38.25 3.93
4758 4851 1.767759 GTGCATTGGTCCTAATGGCT 58.232 50.000 12.91 0.00 38.25 4.75
4759 4852 0.381801 CGTGCATTGGTCCTAATGGC 59.618 55.000 12.91 3.26 38.25 4.40
4760 4853 2.036958 TCGTGCATTGGTCCTAATGG 57.963 50.000 12.91 0.00 38.25 3.16
4761 4854 3.427503 GGTTTCGTGCATTGGTCCTAATG 60.428 47.826 0.00 8.76 40.25 1.90
4762 4855 2.752903 GGTTTCGTGCATTGGTCCTAAT 59.247 45.455 0.00 0.00 0.00 1.73
4763 4856 2.156098 GGTTTCGTGCATTGGTCCTAA 58.844 47.619 0.00 0.00 0.00 2.69
4764 4857 1.816074 GGTTTCGTGCATTGGTCCTA 58.184 50.000 0.00 0.00 0.00 2.94
4765 4858 1.234615 CGGTTTCGTGCATTGGTCCT 61.235 55.000 0.00 0.00 0.00 3.85
4766 4859 1.209127 CGGTTTCGTGCATTGGTCC 59.791 57.895 0.00 0.00 0.00 4.46
4767 4860 0.110373 GTCGGTTTCGTGCATTGGTC 60.110 55.000 0.00 0.00 37.69 4.02
4768 4861 0.816018 TGTCGGTTTCGTGCATTGGT 60.816 50.000 0.00 0.00 37.69 3.67
4769 4862 0.521291 ATGTCGGTTTCGTGCATTGG 59.479 50.000 0.00 0.00 37.69 3.16
4770 4863 1.786575 CGATGTCGGTTTCGTGCATTG 60.787 52.381 0.00 0.00 35.04 2.82
4771 4864 0.442310 CGATGTCGGTTTCGTGCATT 59.558 50.000 0.00 0.00 35.04 3.56
4772 4865 0.389296 TCGATGTCGGTTTCGTGCAT 60.389 50.000 2.25 0.00 40.29 3.96
4773 4866 1.007154 TCGATGTCGGTTTCGTGCA 60.007 52.632 2.25 0.00 40.29 4.57
4774 4867 1.007336 AGTCGATGTCGGTTTCGTGC 61.007 55.000 2.25 0.00 40.29 5.34
4775 4868 0.708370 CAGTCGATGTCGGTTTCGTG 59.292 55.000 2.25 0.00 40.29 4.35
4776 4869 1.007336 GCAGTCGATGTCGGTTTCGT 61.007 55.000 2.25 0.00 40.29 3.85
4777 4870 1.683790 GGCAGTCGATGTCGGTTTCG 61.684 60.000 2.25 0.00 40.29 3.46
4778 4871 0.389948 AGGCAGTCGATGTCGGTTTC 60.390 55.000 2.25 0.00 39.07 2.78
4779 4872 0.389948 GAGGCAGTCGATGTCGGTTT 60.390 55.000 2.25 0.00 39.07 3.27
4780 4873 1.215647 GAGGCAGTCGATGTCGGTT 59.784 57.895 2.25 0.00 39.07 4.44
4781 4874 0.393944 TAGAGGCAGTCGATGTCGGT 60.394 55.000 2.25 0.00 39.07 4.69
4782 4875 0.029567 GTAGAGGCAGTCGATGTCGG 59.970 60.000 2.25 0.00 39.07 4.79
4783 4876 0.733150 TGTAGAGGCAGTCGATGTCG 59.267 55.000 0.00 0.00 39.07 4.35
4784 4877 1.202313 GGTGTAGAGGCAGTCGATGTC 60.202 57.143 0.00 0.00 0.00 3.06
4785 4878 0.818296 GGTGTAGAGGCAGTCGATGT 59.182 55.000 0.00 0.00 0.00 3.06
4786 4879 0.103208 GGGTGTAGAGGCAGTCGATG 59.897 60.000 0.00 0.00 0.00 3.84
4787 4880 1.043673 GGGGTGTAGAGGCAGTCGAT 61.044 60.000 0.00 0.00 0.00 3.59
4788 4881 1.681327 GGGGTGTAGAGGCAGTCGA 60.681 63.158 0.00 0.00 0.00 4.20
4789 4882 2.722201 GGGGGTGTAGAGGCAGTCG 61.722 68.421 0.00 0.00 0.00 4.18
4790 4883 1.306226 AGGGGGTGTAGAGGCAGTC 60.306 63.158 0.00 0.00 0.00 3.51
4791 4884 1.306226 GAGGGGGTGTAGAGGCAGT 60.306 63.158 0.00 0.00 0.00 4.40
4792 4885 2.427245 CGAGGGGGTGTAGAGGCAG 61.427 68.421 0.00 0.00 0.00 4.85
4793 4886 2.363795 CGAGGGGGTGTAGAGGCA 60.364 66.667 0.00 0.00 0.00 4.75
4794 4887 3.851128 GCGAGGGGGTGTAGAGGC 61.851 72.222 0.00 0.00 0.00 4.70
4795 4888 2.042843 AGCGAGGGGGTGTAGAGG 60.043 66.667 0.00 0.00 0.00 3.69
4796 4889 2.482333 CGAGCGAGGGGGTGTAGAG 61.482 68.421 0.00 0.00 0.00 2.43
4797 4890 2.439701 CGAGCGAGGGGGTGTAGA 60.440 66.667 0.00 0.00 0.00 2.59
4798 4891 1.392710 ATTCGAGCGAGGGGGTGTAG 61.393 60.000 0.00 0.00 0.00 2.74
4799 4892 1.380785 ATTCGAGCGAGGGGGTGTA 60.381 57.895 0.00 0.00 0.00 2.90
4800 4893 2.683933 ATTCGAGCGAGGGGGTGT 60.684 61.111 0.00 0.00 0.00 4.16
4801 4894 2.107141 GATTCGAGCGAGGGGGTG 59.893 66.667 0.00 0.00 0.00 4.61
4802 4895 1.987855 TTGATTCGAGCGAGGGGGT 60.988 57.895 0.00 0.00 0.00 4.95
4803 4896 1.521681 GTTGATTCGAGCGAGGGGG 60.522 63.158 0.00 0.00 0.00 5.40
4804 4897 1.521681 GGTTGATTCGAGCGAGGGG 60.522 63.158 0.00 0.00 0.00 4.79
4805 4898 0.528684 GAGGTTGATTCGAGCGAGGG 60.529 60.000 0.00 0.00 0.00 4.30
4806 4899 0.528684 GGAGGTTGATTCGAGCGAGG 60.529 60.000 0.00 0.00 0.00 4.63
4807 4900 0.528684 GGGAGGTTGATTCGAGCGAG 60.529 60.000 0.00 0.00 0.00 5.03
4808 4901 1.254975 TGGGAGGTTGATTCGAGCGA 61.255 55.000 0.00 0.00 0.00 4.93
4809 4902 0.179073 ATGGGAGGTTGATTCGAGCG 60.179 55.000 0.00 0.00 0.00 5.03
4810 4903 1.134401 TGATGGGAGGTTGATTCGAGC 60.134 52.381 0.00 0.00 0.00 5.03
4811 4904 2.555199 GTGATGGGAGGTTGATTCGAG 58.445 52.381 0.00 0.00 0.00 4.04
4812 4905 1.209504 GGTGATGGGAGGTTGATTCGA 59.790 52.381 0.00 0.00 0.00 3.71
4813 4906 1.210478 AGGTGATGGGAGGTTGATTCG 59.790 52.381 0.00 0.00 0.00 3.34
4814 4907 4.713792 ATAGGTGATGGGAGGTTGATTC 57.286 45.455 0.00 0.00 0.00 2.52
4815 4908 6.786843 ATTATAGGTGATGGGAGGTTGATT 57.213 37.500 0.00 0.00 0.00 2.57
4816 4909 6.445139 CCTATTATAGGTGATGGGAGGTTGAT 59.555 42.308 10.02 0.00 41.18 2.57
4817 4910 5.785423 CCTATTATAGGTGATGGGAGGTTGA 59.215 44.000 10.02 0.00 41.18 3.18
4818 4911 5.785423 TCCTATTATAGGTGATGGGAGGTTG 59.215 44.000 16.94 0.00 46.32 3.77
4819 4912 5.989717 TCCTATTATAGGTGATGGGAGGTT 58.010 41.667 16.94 0.00 46.32 3.50
4820 4913 5.594777 CTCCTATTATAGGTGATGGGAGGT 58.405 45.833 16.94 0.00 42.12 3.85
4821 4914 4.407296 GCTCCTATTATAGGTGATGGGAGG 59.593 50.000 20.63 0.00 44.40 4.30
4822 4915 5.276440 AGCTCCTATTATAGGTGATGGGAG 58.724 45.833 20.63 9.89 45.93 4.30
4823 4916 5.273208 GAGCTCCTATTATAGGTGATGGGA 58.727 45.833 20.63 0.21 46.32 4.37
4824 4917 4.407296 GGAGCTCCTATTATAGGTGATGGG 59.593 50.000 26.25 6.99 46.32 4.00
4825 4918 5.026121 TGGAGCTCCTATTATAGGTGATGG 58.974 45.833 32.28 8.35 46.32 3.51
4826 4919 6.351711 CCTTGGAGCTCCTATTATAGGTGATG 60.352 46.154 32.28 10.19 46.32 3.07
4827 4920 5.723887 CCTTGGAGCTCCTATTATAGGTGAT 59.276 44.000 32.28 15.85 46.32 3.06
4828 4921 5.087323 CCTTGGAGCTCCTATTATAGGTGA 58.913 45.833 32.28 5.57 46.32 4.02
4829 4922 4.323104 GCCTTGGAGCTCCTATTATAGGTG 60.323 50.000 32.28 15.46 46.32 4.00
4830 4923 3.841255 GCCTTGGAGCTCCTATTATAGGT 59.159 47.826 32.28 0.00 46.32 3.08
4832 4925 4.323104 GGTGCCTTGGAGCTCCTATTATAG 60.323 50.000 32.28 18.05 42.02 1.31
4833 4926 3.583086 GGTGCCTTGGAGCTCCTATTATA 59.417 47.826 32.28 9.35 42.02 0.98
4834 4927 2.373502 GGTGCCTTGGAGCTCCTATTAT 59.626 50.000 32.28 0.00 42.02 1.28
4835 4928 1.768870 GGTGCCTTGGAGCTCCTATTA 59.231 52.381 32.28 10.58 42.02 0.98
4836 4929 0.548510 GGTGCCTTGGAGCTCCTATT 59.451 55.000 32.28 0.00 42.02 1.73
4837 4930 1.348775 GGGTGCCTTGGAGCTCCTAT 61.349 60.000 32.28 0.00 44.19 2.57
4838 4931 1.995626 GGGTGCCTTGGAGCTCCTA 60.996 63.158 32.28 24.46 44.19 2.94
4839 4932 3.334054 GGGTGCCTTGGAGCTCCT 61.334 66.667 32.28 0.00 44.19 3.69
4840 4933 4.432741 GGGGTGCCTTGGAGCTCC 62.433 72.222 26.78 26.78 44.05 4.70
4841 4934 1.348775 ATAGGGGTGCCTTGGAGCTC 61.349 60.000 4.71 4.71 0.00 4.09
4842 4935 1.308216 ATAGGGGTGCCTTGGAGCT 60.308 57.895 0.00 0.00 0.00 4.09
4843 4936 1.149401 GATAGGGGTGCCTTGGAGC 59.851 63.158 0.00 0.00 0.00 4.70
4844 4937 1.216990 AAGATAGGGGTGCCTTGGAG 58.783 55.000 0.00 0.00 0.00 3.86
4845 4938 1.284785 CAAAGATAGGGGTGCCTTGGA 59.715 52.381 0.00 0.00 0.00 3.53
4846 4939 1.686115 CCAAAGATAGGGGTGCCTTGG 60.686 57.143 0.00 0.00 0.00 3.61
4847 4940 1.005924 ACCAAAGATAGGGGTGCCTTG 59.994 52.381 0.00 0.00 32.60 3.61
4848 4941 1.285078 GACCAAAGATAGGGGTGCCTT 59.715 52.381 0.00 0.00 34.39 4.35
4849 4942 0.919710 GACCAAAGATAGGGGTGCCT 59.080 55.000 0.00 0.00 34.39 4.75
4850 4943 0.919710 AGACCAAAGATAGGGGTGCC 59.080 55.000 0.00 0.00 34.39 5.01
4851 4944 2.019156 GCAGACCAAAGATAGGGGTGC 61.019 57.143 0.00 0.00 34.39 5.01
4852 4945 1.561542 AGCAGACCAAAGATAGGGGTG 59.438 52.381 0.00 0.00 34.39 4.61
4853 4946 1.840635 GAGCAGACCAAAGATAGGGGT 59.159 52.381 0.00 0.00 37.70 4.95
4854 4947 1.141858 GGAGCAGACCAAAGATAGGGG 59.858 57.143 0.00 0.00 0.00 4.79
4855 4948 2.122768 AGGAGCAGACCAAAGATAGGG 58.877 52.381 0.00 0.00 0.00 3.53
4856 4949 3.922171 AAGGAGCAGACCAAAGATAGG 57.078 47.619 0.00 0.00 0.00 2.57
4857 4950 4.195416 GGAAAGGAGCAGACCAAAGATAG 58.805 47.826 0.00 0.00 0.00 2.08
4858 4951 3.054361 GGGAAAGGAGCAGACCAAAGATA 60.054 47.826 0.00 0.00 0.00 1.98
4859 4952 2.291217 GGGAAAGGAGCAGACCAAAGAT 60.291 50.000 0.00 0.00 0.00 2.40
4860 4953 1.073923 GGGAAAGGAGCAGACCAAAGA 59.926 52.381 0.00 0.00 0.00 2.52
4861 4954 1.539157 GGGAAAGGAGCAGACCAAAG 58.461 55.000 0.00 0.00 0.00 2.77
4862 4955 0.112412 GGGGAAAGGAGCAGACCAAA 59.888 55.000 0.00 0.00 0.00 3.28
4863 4956 0.772124 AGGGGAAAGGAGCAGACCAA 60.772 55.000 0.00 0.00 0.00 3.67
4864 4957 1.151810 AGGGGAAAGGAGCAGACCA 60.152 57.895 0.00 0.00 0.00 4.02
4865 4958 0.912006 AGAGGGGAAAGGAGCAGACC 60.912 60.000 0.00 0.00 0.00 3.85
4866 4959 0.251634 CAGAGGGGAAAGGAGCAGAC 59.748 60.000 0.00 0.00 0.00 3.51
4867 4960 0.178891 ACAGAGGGGAAAGGAGCAGA 60.179 55.000 0.00 0.00 0.00 4.26
4868 4961 0.695347 AACAGAGGGGAAAGGAGCAG 59.305 55.000 0.00 0.00 0.00 4.24
4869 4962 1.909302 CTAACAGAGGGGAAAGGAGCA 59.091 52.381 0.00 0.00 0.00 4.26
4870 4963 2.188817 TCTAACAGAGGGGAAAGGAGC 58.811 52.381 0.00 0.00 0.00 4.70
4871 4964 6.561519 TTATTCTAACAGAGGGGAAAGGAG 57.438 41.667 0.00 0.00 0.00 3.69
4872 4965 6.909158 AGATTATTCTAACAGAGGGGAAAGGA 59.091 38.462 0.00 0.00 0.00 3.36
4873 4966 6.995091 CAGATTATTCTAACAGAGGGGAAAGG 59.005 42.308 0.00 0.00 0.00 3.11
4874 4967 7.796054 TCAGATTATTCTAACAGAGGGGAAAG 58.204 38.462 0.00 0.00 0.00 2.62
4875 4968 7.749377 TCAGATTATTCTAACAGAGGGGAAA 57.251 36.000 0.00 0.00 0.00 3.13
4876 4969 7.690301 GCATCAGATTATTCTAACAGAGGGGAA 60.690 40.741 0.00 0.00 0.00 3.97
4877 4970 6.239714 GCATCAGATTATTCTAACAGAGGGGA 60.240 42.308 0.00 0.00 0.00 4.81
4878 4971 5.936956 GCATCAGATTATTCTAACAGAGGGG 59.063 44.000 0.00 0.00 0.00 4.79
4879 4972 5.936956 GGCATCAGATTATTCTAACAGAGGG 59.063 44.000 0.00 0.00 0.00 4.30
4880 4973 6.528321 TGGCATCAGATTATTCTAACAGAGG 58.472 40.000 0.00 0.00 0.00 3.69
4881 4974 7.876582 TGATGGCATCAGATTATTCTAACAGAG 59.123 37.037 25.63 0.00 33.59 3.35
4882 4975 7.738847 TGATGGCATCAGATTATTCTAACAGA 58.261 34.615 25.63 0.00 33.59 3.41
4883 4976 7.974482 TGATGGCATCAGATTATTCTAACAG 57.026 36.000 25.63 0.00 33.59 3.16
4898 4991 1.931841 CGGATGATCGATGATGGCATC 59.068 52.381 20.52 20.52 45.94 3.91
4899 4992 1.551883 TCGGATGATCGATGATGGCAT 59.448 47.619 0.54 0.00 37.47 4.40
4900 4993 0.968405 TCGGATGATCGATGATGGCA 59.032 50.000 0.54 0.00 33.92 4.92
4901 4994 1.067283 ACTCGGATGATCGATGATGGC 60.067 52.381 0.54 0.00 38.55 4.40
4902 4995 4.096984 TGATACTCGGATGATCGATGATGG 59.903 45.833 0.54 0.00 38.55 3.51
4903 4996 5.240713 TGATACTCGGATGATCGATGATG 57.759 43.478 0.54 0.00 38.55 3.07
4904 4997 5.678361 GCTTGATACTCGGATGATCGATGAT 60.678 44.000 0.54 0.00 38.55 2.45
4905 4998 4.379918 GCTTGATACTCGGATGATCGATGA 60.380 45.833 0.54 0.00 38.55 2.92
4906 4999 3.856521 GCTTGATACTCGGATGATCGATG 59.143 47.826 0.54 0.00 38.55 3.84
4907 5000 3.507622 TGCTTGATACTCGGATGATCGAT 59.492 43.478 0.00 0.00 38.55 3.59
4908 5001 2.884639 TGCTTGATACTCGGATGATCGA 59.115 45.455 0.00 0.00 37.60 3.59
4909 5002 3.288809 TGCTTGATACTCGGATGATCG 57.711 47.619 0.00 0.00 0.00 3.69
4910 5003 3.743396 GGTTGCTTGATACTCGGATGATC 59.257 47.826 0.00 0.00 0.00 2.92
4911 5004 3.134623 TGGTTGCTTGATACTCGGATGAT 59.865 43.478 0.00 0.00 0.00 2.45
4912 5005 2.499693 TGGTTGCTTGATACTCGGATGA 59.500 45.455 0.00 0.00 0.00 2.92
4913 5006 2.609459 GTGGTTGCTTGATACTCGGATG 59.391 50.000 0.00 0.00 0.00 3.51
4914 5007 2.236146 TGTGGTTGCTTGATACTCGGAT 59.764 45.455 0.00 0.00 0.00 4.18
4915 5008 1.621317 TGTGGTTGCTTGATACTCGGA 59.379 47.619 0.00 0.00 0.00 4.55
4916 5009 2.093306 TGTGGTTGCTTGATACTCGG 57.907 50.000 0.00 0.00 0.00 4.63
4917 5010 3.261580 TCATGTGGTTGCTTGATACTCG 58.738 45.455 0.00 0.00 0.00 4.18
4918 5011 3.624861 CCTCATGTGGTTGCTTGATACTC 59.375 47.826 5.61 0.00 0.00 2.59
4919 5012 3.614092 CCTCATGTGGTTGCTTGATACT 58.386 45.455 5.61 0.00 0.00 2.12
4920 5013 2.098117 GCCTCATGTGGTTGCTTGATAC 59.902 50.000 15.01 0.00 0.00 2.24
4921 5014 2.290832 TGCCTCATGTGGTTGCTTGATA 60.291 45.455 15.01 0.00 0.00 2.15
4922 5015 1.180029 GCCTCATGTGGTTGCTTGAT 58.820 50.000 15.01 0.00 0.00 2.57
4923 5016 0.178995 TGCCTCATGTGGTTGCTTGA 60.179 50.000 15.01 0.00 0.00 3.02
4924 5017 0.038892 GTGCCTCATGTGGTTGCTTG 60.039 55.000 15.01 0.00 0.00 4.01
4925 5018 1.518056 CGTGCCTCATGTGGTTGCTT 61.518 55.000 15.01 0.00 0.00 3.91
4926 5019 1.968017 CGTGCCTCATGTGGTTGCT 60.968 57.895 15.01 0.00 0.00 3.91
4927 5020 1.965930 TCGTGCCTCATGTGGTTGC 60.966 57.895 15.01 2.01 0.00 4.17
4928 5021 0.884259 TGTCGTGCCTCATGTGGTTG 60.884 55.000 15.01 5.84 0.00 3.77
4929 5022 0.884704 GTGTCGTGCCTCATGTGGTT 60.885 55.000 15.01 0.00 0.00 3.67
4930 5023 1.301716 GTGTCGTGCCTCATGTGGT 60.302 57.895 15.01 0.00 0.00 4.16
4931 5024 2.034879 GGTGTCGTGCCTCATGTGG 61.035 63.158 9.54 9.54 0.00 4.17
4932 5025 2.382746 CGGTGTCGTGCCTCATGTG 61.383 63.158 0.00 0.00 0.00 3.21
4933 5026 2.048222 CGGTGTCGTGCCTCATGT 60.048 61.111 0.00 0.00 0.00 3.21
4934 5027 1.807165 CTCGGTGTCGTGCCTCATG 60.807 63.158 0.00 0.00 37.69 3.07
4935 5028 1.323271 ATCTCGGTGTCGTGCCTCAT 61.323 55.000 0.00 0.00 37.69 2.90
4936 5029 1.532604 AATCTCGGTGTCGTGCCTCA 61.533 55.000 0.00 0.00 37.69 3.86
4937 5030 0.389948 AAATCTCGGTGTCGTGCCTC 60.390 55.000 0.00 0.00 37.69 4.70
4938 5031 0.670546 CAAATCTCGGTGTCGTGCCT 60.671 55.000 0.00 0.00 37.69 4.75
4939 5032 0.949105 ACAAATCTCGGTGTCGTGCC 60.949 55.000 0.00 0.00 37.69 5.01
4940 5033 0.865769 AACAAATCTCGGTGTCGTGC 59.134 50.000 0.00 0.00 37.69 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.