Multiple sequence alignment - TraesCS5B01G183900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G183900 chr5B 100.000 4402 0 0 1 4402 334689179 334684778 0.000000e+00 8130
1 TraesCS5B01G183900 chr5B 97.021 235 7 0 594 828 445179350 445179584 3.560000e-106 396
2 TraesCS5B01G183900 chr5B 96.596 235 8 0 594 828 511291331 511291565 1.650000e-104 390
3 TraesCS5B01G183900 chr5B 84.856 383 51 5 8 388 221201406 221201783 3.580000e-101 379
4 TraesCS5B01G183900 chr5B 96.053 228 9 0 594 821 637133846 637133619 5.990000e-99 372
5 TraesCS5B01G183900 chr5B 100.000 199 0 0 4704 4902 334684476 334684278 7.750000e-98 368
6 TraesCS5B01G183900 chr5D 95.403 2110 45 8 924 2990 293168653 293166553 0.000000e+00 3312
7 TraesCS5B01G183900 chr5D 93.138 1501 59 17 2941 4402 293166552 293165057 0.000000e+00 2161
8 TraesCS5B01G183900 chr5D 82.519 389 62 4 1 388 314890267 314890650 2.190000e-88 337
9 TraesCS5B01G183900 chr5D 92.105 228 15 1 594 821 452221692 452221468 7.920000e-83 318
10 TraesCS5B01G183900 chr5D 89.140 221 23 1 12 231 11313014 11312794 1.740000e-69 274
11 TraesCS5B01G183900 chr5D 79.893 373 59 11 1 366 184098150 184098513 4.870000e-65 259
12 TraesCS5B01G183900 chr5D 93.506 77 5 0 2020 2096 556285495 556285419 1.120000e-21 115
13 TraesCS5B01G183900 chr5A 96.623 1540 24 7 1470 2990 386167218 386165688 0.000000e+00 2531
14 TraesCS5B01G183900 chr5A 93.725 1482 71 11 2941 4402 386165687 386164208 0.000000e+00 2202
15 TraesCS5B01G183900 chr5A 93.446 473 16 3 936 1396 386167684 386167215 0.000000e+00 688
16 TraesCS5B01G183900 chr5A 85.060 415 43 6 1 414 386168588 386168192 5.910000e-109 405
17 TraesCS5B01G183900 chr5A 86.000 200 8 5 4704 4900 386164166 386163984 3.870000e-46 196
18 TraesCS5B01G183900 chr5A 81.720 186 31 3 413 597 386168148 386167965 8.500000e-33 152
19 TraesCS5B01G183900 chr6D 83.810 630 56 17 3155 3772 413020805 413021400 1.540000e-154 556
20 TraesCS5B01G183900 chr6D 82.671 629 58 16 3155 3772 25490498 25491086 1.220000e-140 510
21 TraesCS5B01G183900 chr6D 96.596 235 8 0 594 828 143958706 143958472 1.650000e-104 390
22 TraesCS5B01G183900 chr4D 83.625 629 59 15 3155 3772 506091437 506092032 7.170000e-153 551
23 TraesCS5B01G183900 chr4D 94.505 91 3 1 4173 4263 207372898 207372986 6.620000e-29 139
24 TraesCS5B01G183900 chr4D 93.506 77 5 0 2020 2096 347173362 347173286 1.120000e-21 115
25 TraesCS5B01G183900 chr7A 82.780 633 62 18 3155 3775 32951441 32950844 5.620000e-144 521
26 TraesCS5B01G183900 chr7A 93.506 77 5 0 2020 2096 397427008 397426932 1.120000e-21 115
27 TraesCS5B01G183900 chr3A 82.698 630 63 19 3155 3772 479685859 479686454 7.270000e-143 518
28 TraesCS5B01G183900 chr6A 82.540 630 64 18 3155 3772 594275500 594276095 3.380000e-141 512
29 TraesCS5B01G183900 chr6A 80.864 162 24 7 421 580 228539749 228539905 2.400000e-23 121
30 TraesCS5B01G183900 chr4A 82.890 526 49 21 3155 3667 648976527 648977024 7.540000e-118 435
31 TraesCS5B01G183900 chr2D 86.598 388 45 6 1 385 474642213 474642596 5.870000e-114 422
32 TraesCS5B01G183900 chr2D 93.392 227 11 3 594 818 606697670 606697446 2.830000e-87 333
33 TraesCS5B01G183900 chr2D 84.830 323 41 7 2267 2583 13980812 13980492 7.920000e-83 318
34 TraesCS5B01G183900 chr2D 84.564 298 24 11 588 885 559399124 559398849 4.830000e-70 276
35 TraesCS5B01G183900 chr6B 81.939 526 51 19 3155 3667 123934681 123935175 5.910000e-109 405
36 TraesCS5B01G183900 chr6B 97.447 235 6 0 594 828 260601042 260601276 7.640000e-108 401
37 TraesCS5B01G183900 chr6B 83.117 385 54 6 1 378 548113801 548113421 1.690000e-89 340
38 TraesCS5B01G183900 chr6B 82.069 145 20 6 433 576 602546199 602546338 8.620000e-23 119
39 TraesCS5B01G183900 chr7D 86.450 369 48 2 21 388 46130259 46130626 2.120000e-108 403
40 TraesCS5B01G183900 chr7D 83.448 145 18 6 429 571 536285735 536285595 3.980000e-26 130
41 TraesCS5B01G183900 chr7D 93.506 77 5 0 2020 2096 435181372 435181448 1.120000e-21 115
42 TraesCS5B01G183900 chr7D 93.506 77 5 0 2020 2096 577331256 577331180 1.120000e-21 115
43 TraesCS5B01G183900 chr7D 79.755 163 25 7 417 576 19581331 19581488 1.440000e-20 111
44 TraesCS5B01G183900 chr7D 79.870 154 24 7 424 576 311624382 311624235 6.710000e-19 106
45 TraesCS5B01G183900 chr7B 97.021 235 7 0 594 828 735986796 735987030 3.560000e-106 396
46 TraesCS5B01G183900 chr7B 89.035 228 21 2 594 821 380710961 380710738 3.740000e-71 279
47 TraesCS5B01G183900 chr7B 81.325 166 23 8 421 585 706272512 706272670 1.430000e-25 128
48 TraesCS5B01G183900 chr3B 96.266 241 8 1 588 828 825271358 825271119 1.280000e-105 394
49 TraesCS5B01G183900 chr3B 83.784 148 21 3 412 558 524766326 524766181 2.380000e-28 137
50 TraesCS5B01G183900 chr3B 93.506 77 5 0 2020 2096 290617137 290617213 1.120000e-21 115
51 TraesCS5B01G183900 chr4B 96.596 235 8 0 594 828 546575858 546575624 1.650000e-104 390
52 TraesCS5B01G183900 chr4B 96.596 235 8 0 594 828 546598225 546597991 1.650000e-104 390
53 TraesCS5B01G183900 chr4B 95.851 241 9 1 588 828 136674735 136674974 5.950000e-104 388
54 TraesCS5B01G183900 chr4B 81.522 368 58 6 9 369 127726486 127726850 1.330000e-75 294
55 TraesCS5B01G183900 chr1B 88.646 229 21 5 594 821 666082029 666081805 1.740000e-69 274
56 TraesCS5B01G183900 chr1B 84.669 287 22 9 594 879 521228922 521228657 2.910000e-67 267
57 TraesCS5B01G183900 chr1D 88.384 198 23 0 594 791 460986685 460986488 6.340000e-59 239
58 TraesCS5B01G183900 chr2B 82.379 227 37 1 95 321 759178437 759178214 1.390000e-45 195
59 TraesCS5B01G183900 chrUn 80.000 215 27 6 2034 2233 2058397 2058184 1.420000e-30 145
60 TraesCS5B01G183900 chr3D 80.203 197 12 14 694 886 607308058 607307885 6.660000e-24 122
61 TraesCS5B01G183900 chr3D 93.506 77 5 0 2020 2096 584380482 584380406 1.120000e-21 115
62 TraesCS5B01G183900 chr1A 80.745 161 28 3 424 583 373787447 373787289 6.660000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G183900 chr5B 334684278 334689179 4901 True 4249.0 8130 100.0000 1 4902 2 chr5B.!!$R2 4901
1 TraesCS5B01G183900 chr5D 293165057 293168653 3596 True 2736.5 3312 94.2705 924 4402 2 chr5D.!!$R4 3478
2 TraesCS5B01G183900 chr5A 386163984 386168588 4604 True 1029.0 2531 89.4290 1 4900 6 chr5A.!!$R1 4899
3 TraesCS5B01G183900 chr6D 413020805 413021400 595 False 556.0 556 83.8100 3155 3772 1 chr6D.!!$F2 617
4 TraesCS5B01G183900 chr6D 25490498 25491086 588 False 510.0 510 82.6710 3155 3772 1 chr6D.!!$F1 617
5 TraesCS5B01G183900 chr4D 506091437 506092032 595 False 551.0 551 83.6250 3155 3772 1 chr4D.!!$F2 617
6 TraesCS5B01G183900 chr7A 32950844 32951441 597 True 521.0 521 82.7800 3155 3775 1 chr7A.!!$R1 620
7 TraesCS5B01G183900 chr3A 479685859 479686454 595 False 518.0 518 82.6980 3155 3772 1 chr3A.!!$F1 617
8 TraesCS5B01G183900 chr6A 594275500 594276095 595 False 512.0 512 82.5400 3155 3772 1 chr6A.!!$F2 617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
894 941 0.035458 AGAGGGACAAGCTTGTTCGG 59.965 55.000 31.58 6.36 42.43 4.30 F
1385 1664 0.757935 CATGGGGCAAAGGGGAGATG 60.758 60.000 0.00 0.00 0.00 2.90 F
2069 2366 2.280628 GGAGCACTCTTTGTTATCCCG 58.719 52.381 0.00 0.00 0.00 5.14 F
2868 3193 2.450609 TACTGCACCTTTCGAGGTTC 57.549 50.000 0.00 0.00 40.85 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1719 2005 0.674581 TGCTGCTACTGCCATGACAC 60.675 55.0 0.00 0.0 38.71 3.67 R
2576 2900 1.230324 GGTAAAGCGAGATGATGGCC 58.770 55.0 0.00 0.0 32.00 5.36 R
3522 3911 0.174162 AAGCGCGTCGGGTTAGTATT 59.826 50.0 8.43 0.0 0.00 1.89 R
4787 5208 0.252479 AAGCAGCTGGAGATGACTGG 59.748 55.0 17.12 0.0 32.25 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 2.745100 GTCGTCCTTTTCCCGGCC 60.745 66.667 0.00 0.00 0.00 6.13
83 84 3.243053 TCGTCCTTTTCCCGGCCA 61.243 61.111 2.24 0.00 0.00 5.36
105 107 1.810532 GACGAGTGGCGATCTCCTT 59.189 57.895 2.88 0.00 44.57 3.36
106 108 0.526524 GACGAGTGGCGATCTCCTTG 60.527 60.000 2.88 0.00 44.57 3.61
112 114 2.279784 GCGATCTCCTTGAGGGCG 60.280 66.667 0.00 0.00 35.41 6.13
136 138 1.821332 CTGGCGCTCCATTTCCTCC 60.821 63.158 7.64 0.00 42.51 4.30
140 142 2.193248 GCTCCATTTCCTCCCGGG 59.807 66.667 16.85 16.85 0.00 5.73
141 143 2.193248 CTCCATTTCCTCCCGGGC 59.807 66.667 18.49 0.00 34.39 6.13
151 153 4.415150 TCCCGGGCGTAGTCGTCT 62.415 66.667 18.49 0.00 41.76 4.18
154 156 3.494336 CGGGCGTAGTCGTCTCGT 61.494 66.667 0.00 0.00 41.76 4.18
156 158 2.684843 GGGCGTAGTCGTCTCGTGT 61.685 63.158 0.00 0.00 41.76 4.49
204 206 0.454600 GCCATGTCAATGTGCTCCTG 59.545 55.000 0.00 0.00 31.22 3.86
238 240 4.235762 GGCATCGCCGGCTCCTTA 62.236 66.667 26.68 4.72 39.62 2.69
250 252 0.533085 GCTCCTTATTCGGCCTGACC 60.533 60.000 0.00 0.00 0.00 4.02
281 283 1.686110 GAGCGGGGAGGAGGAGAAA 60.686 63.158 0.00 0.00 0.00 2.52
285 287 1.861982 CGGGGAGGAGGAGAAAGTTA 58.138 55.000 0.00 0.00 0.00 2.24
292 294 0.806492 GAGGAGAAAGTTAGCGGCGG 60.806 60.000 9.78 0.00 0.00 6.13
309 311 0.249322 CGGCGACCCTCGTTTATGAT 60.249 55.000 0.00 0.00 42.81 2.45
320 322 1.891919 TTTATGATGAGGCCGCCGC 60.892 57.895 6.14 6.14 0.00 6.53
346 348 1.880340 GCGCTCCGACATCTCTTGG 60.880 63.158 0.00 0.00 0.00 3.61
352 354 1.617018 CCGACATCTCTTGGGGCTCA 61.617 60.000 0.00 0.00 0.00 4.26
365 367 2.743928 GCTCAGCCTTGACGGTGG 60.744 66.667 0.00 0.00 34.25 4.61
371 373 2.280524 CCTTGACGGTGGCGAACA 60.281 61.111 0.00 0.00 0.00 3.18
373 375 1.594293 CTTGACGGTGGCGAACAGT 60.594 57.895 0.00 0.00 40.16 3.55
377 379 3.403057 CGGTGGCGAACAGTGTCG 61.403 66.667 0.00 3.44 43.98 4.35
398 400 3.998672 GTGCCGGGGTTCTCGACA 61.999 66.667 2.18 0.00 0.00 4.35
408 410 1.540407 GTTCTCGACATCGCTGACTC 58.460 55.000 0.00 0.00 39.60 3.36
427 474 3.917760 GCGGATGCCTCCTAGCGT 61.918 66.667 6.46 0.00 39.65 5.07
465 512 4.829518 GCCGGCGCCAATTTCGAC 62.830 66.667 28.98 0.00 0.00 4.20
474 521 1.375551 CCAATTTCGACCCTAACCGG 58.624 55.000 0.00 0.00 0.00 5.28
488 535 1.092348 AACCGGCGAAATTTAGGCTC 58.908 50.000 19.77 7.41 0.00 4.70
489 536 0.746923 ACCGGCGAAATTTAGGCTCC 60.747 55.000 19.77 3.87 0.00 4.70
493 540 1.408266 GGCGAAATTTAGGCTCCTGGA 60.408 52.381 16.04 0.00 0.00 3.86
494 541 1.943340 GCGAAATTTAGGCTCCTGGAG 59.057 52.381 19.55 19.55 0.00 3.86
495 542 2.420129 GCGAAATTTAGGCTCCTGGAGA 60.420 50.000 27.53 6.18 0.00 3.71
496 543 3.745797 GCGAAATTTAGGCTCCTGGAGAT 60.746 47.826 27.53 16.33 0.00 2.75
498 545 2.947127 ATTTAGGCTCCTGGAGATGC 57.053 50.000 27.53 12.77 0.00 3.91
502 549 2.430610 GGCTCCTGGAGATGCGACT 61.431 63.158 27.53 0.00 0.00 4.18
504 551 1.440893 CTCCTGGAGATGCGACTGG 59.559 63.158 19.13 0.00 0.00 4.00
505 552 1.000359 TCCTGGAGATGCGACTGGA 60.000 57.895 0.00 0.00 0.00 3.86
508 555 2.105128 GGAGATGCGACTGGACCG 59.895 66.667 0.00 0.00 0.00 4.79
576 623 2.224159 GGTGGGGTGGAGAAGCTCA 61.224 63.158 0.00 0.00 33.20 4.26
579 626 1.559682 GTGGGGTGGAGAAGCTCATAA 59.440 52.381 0.00 0.00 39.46 1.90
606 653 9.212641 TGCTAAATACATCTATTCTTCATCTGC 57.787 33.333 0.00 0.00 0.00 4.26
607 654 8.379161 GCTAAATACATCTATTCTTCATCTGCG 58.621 37.037 0.00 0.00 0.00 5.18
608 655 7.664082 AAATACATCTATTCTTCATCTGCGG 57.336 36.000 0.00 0.00 0.00 5.69
609 656 3.397482 ACATCTATTCTTCATCTGCGGC 58.603 45.455 0.00 0.00 0.00 6.53
610 657 2.140065 TCTATTCTTCATCTGCGGCG 57.860 50.000 0.51 0.51 0.00 6.46
611 658 1.143305 CTATTCTTCATCTGCGGCGG 58.857 55.000 9.78 1.35 0.00 6.13
612 659 0.464036 TATTCTTCATCTGCGGCGGT 59.536 50.000 9.78 0.00 0.00 5.68
613 660 0.392998 ATTCTTCATCTGCGGCGGTT 60.393 50.000 9.78 0.00 0.00 4.44
614 661 1.298157 TTCTTCATCTGCGGCGGTTG 61.298 55.000 9.78 12.61 0.00 3.77
615 662 3.386867 CTTCATCTGCGGCGGTTGC 62.387 63.158 9.78 0.00 41.71 4.17
616 663 3.899981 TTCATCTGCGGCGGTTGCT 62.900 57.895 9.78 0.00 42.25 3.91
617 664 2.511373 CATCTGCGGCGGTTGCTA 60.511 61.111 9.78 0.00 42.25 3.49
618 665 1.889105 CATCTGCGGCGGTTGCTAT 60.889 57.895 9.78 0.00 42.25 2.97
619 666 1.153168 ATCTGCGGCGGTTGCTATT 60.153 52.632 9.78 0.00 42.25 1.73
620 667 1.160329 ATCTGCGGCGGTTGCTATTC 61.160 55.000 9.78 0.00 42.25 1.75
621 668 1.815421 CTGCGGCGGTTGCTATTCT 60.815 57.895 9.78 0.00 42.25 2.40
622 669 2.040213 CTGCGGCGGTTGCTATTCTG 62.040 60.000 9.78 0.00 42.25 3.02
623 670 2.823829 GCGGCGGTTGCTATTCTGG 61.824 63.158 9.78 0.00 42.25 3.86
624 671 1.449601 CGGCGGTTGCTATTCTGGT 60.450 57.895 0.00 0.00 42.25 4.00
625 672 1.705337 CGGCGGTTGCTATTCTGGTG 61.705 60.000 0.00 0.00 42.25 4.17
626 673 1.429423 GCGGTTGCTATTCTGGTGC 59.571 57.895 0.00 0.00 38.39 5.01
627 674 1.715585 CGGTTGCTATTCTGGTGCG 59.284 57.895 0.00 0.00 0.00 5.34
628 675 1.429423 GGTTGCTATTCTGGTGCGC 59.571 57.895 0.00 0.00 0.00 6.09
629 676 1.026718 GGTTGCTATTCTGGTGCGCT 61.027 55.000 9.73 0.00 0.00 5.92
630 677 0.097674 GTTGCTATTCTGGTGCGCTG 59.902 55.000 9.73 0.00 0.00 5.18
631 678 1.026182 TTGCTATTCTGGTGCGCTGG 61.026 55.000 9.73 0.00 0.00 4.85
632 679 1.450312 GCTATTCTGGTGCGCTGGT 60.450 57.895 9.73 0.00 0.00 4.00
633 680 1.432270 GCTATTCTGGTGCGCTGGTC 61.432 60.000 9.73 0.00 0.00 4.02
634 681 0.811616 CTATTCTGGTGCGCTGGTCC 60.812 60.000 9.73 6.75 0.00 4.46
635 682 1.264749 TATTCTGGTGCGCTGGTCCT 61.265 55.000 9.73 0.00 0.00 3.85
636 683 1.264749 ATTCTGGTGCGCTGGTCCTA 61.265 55.000 9.73 0.00 0.00 2.94
637 684 2.125512 CTGGTGCGCTGGTCCTAC 60.126 66.667 9.73 0.00 0.00 3.18
638 685 3.989698 CTGGTGCGCTGGTCCTACG 62.990 68.421 9.73 0.30 0.00 3.51
639 686 4.814294 GGTGCGCTGGTCCTACGG 62.814 72.222 9.73 0.00 0.00 4.02
640 687 4.814294 GTGCGCTGGTCCTACGGG 62.814 72.222 9.73 0.00 0.00 5.28
648 695 2.820261 GTCCTACGGGGCCTTAGC 59.180 66.667 0.84 0.00 38.76 3.09
649 696 2.062177 GTCCTACGGGGCCTTAGCA 61.062 63.158 0.84 0.00 42.56 3.49
650 697 2.062177 TCCTACGGGGCCTTAGCAC 61.062 63.158 0.84 0.00 43.97 4.40
651 698 2.106332 CTACGGGGCCTTAGCACG 59.894 66.667 0.84 0.00 46.55 5.34
652 699 2.362760 TACGGGGCCTTAGCACGA 60.363 61.111 0.84 0.00 46.55 4.35
653 700 2.624437 CTACGGGGCCTTAGCACGAC 62.624 65.000 0.84 0.00 46.55 4.34
655 702 3.766691 GGGGCCTTAGCACGACGA 61.767 66.667 0.84 0.00 46.55 4.20
656 703 2.508663 GGGCCTTAGCACGACGAC 60.509 66.667 0.84 0.00 42.56 4.34
657 704 2.572284 GGCCTTAGCACGACGACT 59.428 61.111 0.00 0.59 42.56 4.18
658 705 1.080025 GGCCTTAGCACGACGACTT 60.080 57.895 0.00 0.00 42.56 3.01
659 706 1.077089 GGCCTTAGCACGACGACTTC 61.077 60.000 0.00 0.00 42.56 3.01
660 707 1.077089 GCCTTAGCACGACGACTTCC 61.077 60.000 0.00 0.00 39.53 3.46
661 708 0.458025 CCTTAGCACGACGACTTCCC 60.458 60.000 0.00 0.00 0.00 3.97
662 709 0.797249 CTTAGCACGACGACTTCCCG 60.797 60.000 0.00 0.00 0.00 5.14
663 710 1.236616 TTAGCACGACGACTTCCCGA 61.237 55.000 0.00 0.00 0.00 5.14
664 711 1.915614 TAGCACGACGACTTCCCGAC 61.916 60.000 0.00 0.00 0.00 4.79
665 712 2.952245 CACGACGACTTCCCGACT 59.048 61.111 0.00 0.00 0.00 4.18
666 713 1.915614 GCACGACGACTTCCCGACTA 61.916 60.000 0.00 0.00 0.00 2.59
667 714 0.731417 CACGACGACTTCCCGACTAT 59.269 55.000 0.00 0.00 0.00 2.12
668 715 1.012841 ACGACGACTTCCCGACTATC 58.987 55.000 0.00 0.00 0.00 2.08
669 716 1.297664 CGACGACTTCCCGACTATCT 58.702 55.000 0.00 0.00 0.00 1.98
670 717 2.159043 ACGACGACTTCCCGACTATCTA 60.159 50.000 0.00 0.00 0.00 1.98
671 718 2.220593 CGACGACTTCCCGACTATCTAC 59.779 54.545 0.00 0.00 0.00 2.59
672 719 3.465871 GACGACTTCCCGACTATCTACT 58.534 50.000 0.00 0.00 0.00 2.57
673 720 4.626042 GACGACTTCCCGACTATCTACTA 58.374 47.826 0.00 0.00 0.00 1.82
674 721 4.376146 ACGACTTCCCGACTATCTACTAC 58.624 47.826 0.00 0.00 0.00 2.73
675 722 4.141846 ACGACTTCCCGACTATCTACTACA 60.142 45.833 0.00 0.00 0.00 2.74
676 723 4.813161 CGACTTCCCGACTATCTACTACAA 59.187 45.833 0.00 0.00 0.00 2.41
677 724 5.277250 CGACTTCCCGACTATCTACTACAAC 60.277 48.000 0.00 0.00 0.00 3.32
678 725 5.503927 ACTTCCCGACTATCTACTACAACA 58.496 41.667 0.00 0.00 0.00 3.33
679 726 5.948162 ACTTCCCGACTATCTACTACAACAA 59.052 40.000 0.00 0.00 0.00 2.83
680 727 6.095160 ACTTCCCGACTATCTACTACAACAAG 59.905 42.308 0.00 0.00 0.00 3.16
681 728 5.503927 TCCCGACTATCTACTACAACAAGT 58.496 41.667 0.00 0.00 0.00 3.16
682 729 5.948162 TCCCGACTATCTACTACAACAAGTT 59.052 40.000 0.00 0.00 0.00 2.66
683 730 6.034591 CCCGACTATCTACTACAACAAGTTG 58.965 44.000 11.16 11.16 45.58 3.16
693 740 2.153366 CAACAAGTTGTGCCCCATTC 57.847 50.000 9.79 0.00 35.92 2.67
694 741 1.047801 AACAAGTTGTGCCCCATTCC 58.952 50.000 9.79 0.00 0.00 3.01
695 742 1.178534 ACAAGTTGTGCCCCATTCCG 61.179 55.000 7.96 0.00 0.00 4.30
696 743 1.606313 AAGTTGTGCCCCATTCCGG 60.606 57.895 0.00 0.00 0.00 5.14
703 750 3.872603 CCCCATTCCGGCGATGGA 61.873 66.667 28.30 4.75 45.59 3.41
704 751 2.281070 CCCATTCCGGCGATGGAG 60.281 66.667 28.30 18.30 45.59 3.86
705 752 2.281070 CCATTCCGGCGATGGAGG 60.281 66.667 24.53 6.39 45.59 4.30
706 753 2.281070 CATTCCGGCGATGGAGGG 60.281 66.667 9.30 0.00 39.72 4.30
707 754 3.560251 ATTCCGGCGATGGAGGGG 61.560 66.667 9.30 0.00 39.72 4.79
712 759 4.996434 GGCGATGGAGGGGCGATG 62.996 72.222 0.00 0.00 0.00 3.84
713 760 3.928779 GCGATGGAGGGGCGATGA 61.929 66.667 0.00 0.00 0.00 2.92
714 761 2.029666 CGATGGAGGGGCGATGAC 59.970 66.667 0.00 0.00 0.00 3.06
715 762 2.029666 GATGGAGGGGCGATGACG 59.970 66.667 0.00 0.00 42.93 4.35
716 763 3.521529 GATGGAGGGGCGATGACGG 62.522 68.421 0.00 0.00 40.15 4.79
740 787 3.191539 GCCTTCGGCTCGCTTCAG 61.192 66.667 0.00 0.00 46.69 3.02
741 788 2.262915 CCTTCGGCTCGCTTCAGT 59.737 61.111 0.00 0.00 0.00 3.41
742 789 2.097038 CCTTCGGCTCGCTTCAGTG 61.097 63.158 0.00 0.00 0.00 3.66
743 790 2.734673 CTTCGGCTCGCTTCAGTGC 61.735 63.158 0.00 0.00 0.00 4.40
744 791 3.226429 TTCGGCTCGCTTCAGTGCT 62.226 57.895 0.00 0.00 0.00 4.40
745 792 3.485431 CGGCTCGCTTCAGTGCTG 61.485 66.667 0.00 0.00 0.00 4.41
746 793 3.123620 GGCTCGCTTCAGTGCTGG 61.124 66.667 0.00 0.00 0.00 4.85
747 794 2.358003 GCTCGCTTCAGTGCTGGT 60.358 61.111 0.00 0.00 0.00 4.00
748 795 1.079819 GCTCGCTTCAGTGCTGGTA 60.080 57.895 0.00 0.00 0.00 3.25
749 796 1.080995 GCTCGCTTCAGTGCTGGTAG 61.081 60.000 0.00 0.00 0.00 3.18
750 797 0.244994 CTCGCTTCAGTGCTGGTAGT 59.755 55.000 0.00 0.00 0.00 2.73
751 798 0.243907 TCGCTTCAGTGCTGGTAGTC 59.756 55.000 0.00 0.00 0.00 2.59
752 799 1.073216 CGCTTCAGTGCTGGTAGTCG 61.073 60.000 0.00 3.25 0.00 4.18
753 800 1.355066 GCTTCAGTGCTGGTAGTCGC 61.355 60.000 0.00 0.00 0.00 5.19
754 801 0.737715 CTTCAGTGCTGGTAGTCGCC 60.738 60.000 0.00 0.00 0.00 5.54
755 802 2.486636 TTCAGTGCTGGTAGTCGCCG 62.487 60.000 0.00 0.00 0.00 6.46
756 803 4.436998 AGTGCTGGTAGTCGCCGC 62.437 66.667 0.00 0.00 0.00 6.53
757 804 4.436998 GTGCTGGTAGTCGCCGCT 62.437 66.667 0.00 0.00 0.00 5.52
758 805 2.752640 TGCTGGTAGTCGCCGCTA 60.753 61.111 0.00 0.00 0.00 4.26
759 806 2.026301 GCTGGTAGTCGCCGCTAG 59.974 66.667 0.00 0.00 0.00 3.42
760 807 2.722487 CTGGTAGTCGCCGCTAGG 59.278 66.667 0.00 0.00 41.62 3.02
761 808 2.044650 TGGTAGTCGCCGCTAGGT 60.045 61.111 0.00 0.00 40.50 3.08
768 815 3.444737 CGCCGCTAGGTGGTCTAT 58.555 61.111 0.00 0.00 44.11 1.98
769 816 1.007271 CGCCGCTAGGTGGTCTATG 60.007 63.158 0.00 0.00 44.11 2.23
770 817 1.367840 GCCGCTAGGTGGTCTATGG 59.632 63.158 0.00 0.00 40.50 2.74
771 818 1.113517 GCCGCTAGGTGGTCTATGGA 61.114 60.000 0.00 0.00 40.50 3.41
772 819 1.633774 CCGCTAGGTGGTCTATGGAT 58.366 55.000 0.00 0.00 0.00 3.41
773 820 1.546476 CCGCTAGGTGGTCTATGGATC 59.454 57.143 0.00 0.00 0.00 3.36
774 821 2.520069 CGCTAGGTGGTCTATGGATCT 58.480 52.381 0.00 0.00 0.00 2.75
775 822 2.230025 CGCTAGGTGGTCTATGGATCTG 59.770 54.545 0.00 0.00 0.00 2.90
776 823 2.564947 GCTAGGTGGTCTATGGATCTGG 59.435 54.545 0.00 0.00 0.00 3.86
777 824 3.755483 GCTAGGTGGTCTATGGATCTGGA 60.755 52.174 0.00 0.00 0.00 3.86
778 825 3.645053 AGGTGGTCTATGGATCTGGAT 57.355 47.619 0.00 0.00 0.00 3.41
779 826 3.246301 AGGTGGTCTATGGATCTGGATG 58.754 50.000 0.00 0.00 0.00 3.51
780 827 2.975489 GGTGGTCTATGGATCTGGATGT 59.025 50.000 0.00 0.00 0.00 3.06
781 828 4.140686 AGGTGGTCTATGGATCTGGATGTA 60.141 45.833 0.00 0.00 0.00 2.29
782 829 4.593206 GGTGGTCTATGGATCTGGATGTAA 59.407 45.833 0.00 0.00 0.00 2.41
783 830 5.249393 GGTGGTCTATGGATCTGGATGTAAT 59.751 44.000 0.00 0.00 0.00 1.89
784 831 6.240002 GGTGGTCTATGGATCTGGATGTAATT 60.240 42.308 0.00 0.00 0.00 1.40
785 832 7.227156 GTGGTCTATGGATCTGGATGTAATTT 58.773 38.462 0.00 0.00 0.00 1.82
786 833 7.721399 GTGGTCTATGGATCTGGATGTAATTTT 59.279 37.037 0.00 0.00 0.00 1.82
787 834 8.281531 TGGTCTATGGATCTGGATGTAATTTTT 58.718 33.333 0.00 0.00 0.00 1.94
788 835 9.793259 GGTCTATGGATCTGGATGTAATTTTTA 57.207 33.333 0.00 0.00 0.00 1.52
813 860 5.796350 ATTTCTGGTATTCGTTGTACTGC 57.204 39.130 0.00 0.00 0.00 4.40
814 861 3.241067 TCTGGTATTCGTTGTACTGCC 57.759 47.619 0.00 0.00 0.00 4.85
815 862 2.563620 TCTGGTATTCGTTGTACTGCCA 59.436 45.455 0.00 0.00 0.00 4.92
816 863 3.196901 TCTGGTATTCGTTGTACTGCCAT 59.803 43.478 0.00 0.00 0.00 4.40
817 864 3.266636 TGGTATTCGTTGTACTGCCATG 58.733 45.455 0.00 0.00 0.00 3.66
818 865 3.055747 TGGTATTCGTTGTACTGCCATGA 60.056 43.478 0.00 0.00 0.00 3.07
819 866 4.127171 GGTATTCGTTGTACTGCCATGAT 58.873 43.478 0.00 0.00 0.00 2.45
820 867 4.574828 GGTATTCGTTGTACTGCCATGATT 59.425 41.667 0.00 0.00 0.00 2.57
821 868 5.756347 GGTATTCGTTGTACTGCCATGATTA 59.244 40.000 0.00 0.00 0.00 1.75
822 869 6.259167 GGTATTCGTTGTACTGCCATGATTAA 59.741 38.462 0.00 0.00 0.00 1.40
823 870 6.751514 ATTCGTTGTACTGCCATGATTAAA 57.248 33.333 0.00 0.00 0.00 1.52
824 871 5.794687 TCGTTGTACTGCCATGATTAAAG 57.205 39.130 0.00 0.00 0.00 1.85
825 872 5.483811 TCGTTGTACTGCCATGATTAAAGA 58.516 37.500 0.00 0.00 0.00 2.52
826 873 6.112734 TCGTTGTACTGCCATGATTAAAGAT 58.887 36.000 0.00 0.00 0.00 2.40
827 874 6.037062 TCGTTGTACTGCCATGATTAAAGATG 59.963 38.462 0.00 0.00 0.00 2.90
828 875 6.498304 GTTGTACTGCCATGATTAAAGATGG 58.502 40.000 10.48 10.48 41.95 3.51
829 876 5.754782 TGTACTGCCATGATTAAAGATGGT 58.245 37.500 14.51 2.20 41.22 3.55
830 877 5.589855 TGTACTGCCATGATTAAAGATGGTG 59.410 40.000 14.51 11.17 41.22 4.17
831 878 3.382546 ACTGCCATGATTAAAGATGGTGC 59.617 43.478 14.51 5.26 41.22 5.01
832 879 2.694628 TGCCATGATTAAAGATGGTGCC 59.305 45.455 14.51 3.11 41.22 5.01
833 880 2.694628 GCCATGATTAAAGATGGTGCCA 59.305 45.455 14.51 0.00 41.22 4.92
834 881 3.322828 GCCATGATTAAAGATGGTGCCAT 59.677 43.478 14.51 2.95 41.22 4.40
835 882 4.798263 GCCATGATTAAAGATGGTGCCATG 60.798 45.833 8.64 0.00 41.22 3.66
836 883 4.585581 CCATGATTAAAGATGGTGCCATGA 59.414 41.667 8.64 0.00 36.70 3.07
837 884 5.245301 CCATGATTAAAGATGGTGCCATGAT 59.755 40.000 8.64 0.00 36.70 2.45
838 885 6.239487 CCATGATTAAAGATGGTGCCATGATT 60.239 38.462 8.64 5.98 36.70 2.57
839 886 6.151663 TGATTAAAGATGGTGCCATGATTG 57.848 37.500 8.64 0.00 36.70 2.67
840 887 5.892686 TGATTAAAGATGGTGCCATGATTGA 59.107 36.000 8.64 1.22 36.70 2.57
841 888 6.380560 TGATTAAAGATGGTGCCATGATTGAA 59.619 34.615 8.64 3.69 36.70 2.69
842 889 4.730949 AAAGATGGTGCCATGATTGAAG 57.269 40.909 8.64 0.00 36.70 3.02
843 890 3.657398 AGATGGTGCCATGATTGAAGA 57.343 42.857 8.64 0.00 36.70 2.87
844 891 4.180377 AGATGGTGCCATGATTGAAGAT 57.820 40.909 8.64 0.00 36.70 2.40
845 892 3.889538 AGATGGTGCCATGATTGAAGATG 59.110 43.478 8.64 0.00 36.70 2.90
846 893 3.369242 TGGTGCCATGATTGAAGATGA 57.631 42.857 0.00 0.00 0.00 2.92
847 894 3.699413 TGGTGCCATGATTGAAGATGAA 58.301 40.909 0.00 0.00 0.00 2.57
848 895 4.283337 TGGTGCCATGATTGAAGATGAAT 58.717 39.130 0.00 0.00 0.00 2.57
849 896 5.447757 TGGTGCCATGATTGAAGATGAATA 58.552 37.500 0.00 0.00 0.00 1.75
850 897 5.533528 TGGTGCCATGATTGAAGATGAATAG 59.466 40.000 0.00 0.00 0.00 1.73
851 898 5.766670 GGTGCCATGATTGAAGATGAATAGA 59.233 40.000 0.00 0.00 0.00 1.98
852 899 6.433404 GGTGCCATGATTGAAGATGAATAGAT 59.567 38.462 0.00 0.00 0.00 1.98
853 900 7.039923 GGTGCCATGATTGAAGATGAATAGATT 60.040 37.037 0.00 0.00 0.00 2.40
854 901 7.808381 GTGCCATGATTGAAGATGAATAGATTG 59.192 37.037 0.00 0.00 0.00 2.67
855 902 7.722285 TGCCATGATTGAAGATGAATAGATTGA 59.278 33.333 0.00 0.00 0.00 2.57
856 903 8.573885 GCCATGATTGAAGATGAATAGATTGAA 58.426 33.333 0.00 0.00 0.00 2.69
894 941 0.035458 AGAGGGACAAGCTTGTTCGG 59.965 55.000 31.58 6.36 42.43 4.30
895 942 0.955919 GAGGGACAAGCTTGTTCGGG 60.956 60.000 31.58 5.57 42.43 5.14
896 943 2.626780 GGGACAAGCTTGTTCGGGC 61.627 63.158 31.58 18.55 42.43 6.13
897 944 2.626780 GGACAAGCTTGTTCGGGCC 61.627 63.158 31.58 23.17 42.43 5.80
898 945 2.966309 GACAAGCTTGTTCGGGCCG 61.966 63.158 31.58 22.51 42.43 6.13
909 956 3.528370 CGGGCCGAGGGAGTACTG 61.528 72.222 24.41 0.00 0.00 2.74
921 968 2.000447 GGAGTACTGCCTGCTTTTACG 59.000 52.381 0.00 0.00 0.00 3.18
1003 1270 2.513753 CTGATCGTCTCCAGCCTATCT 58.486 52.381 0.00 0.00 0.00 1.98
1385 1664 0.757935 CATGGGGCAAAGGGGAGATG 60.758 60.000 0.00 0.00 0.00 2.90
1451 1730 2.863809 AGTCAAAGTAAAGTGGGGCAG 58.136 47.619 0.00 0.00 0.00 4.85
1461 1740 6.357367 AGTAAAGTGGGGCAGTTTATCTATG 58.643 40.000 0.00 0.00 40.08 2.23
1462 1741 4.862641 AAGTGGGGCAGTTTATCTATGT 57.137 40.909 0.00 0.00 0.00 2.29
1541 1827 2.431057 AGTTCGTCAGATCCGCCTATTT 59.569 45.455 0.00 0.00 0.00 1.40
1553 1839 5.055265 TCCGCCTATTTGGAATGGAAATA 57.945 39.130 0.00 0.00 38.35 1.40
1554 1840 4.825085 TCCGCCTATTTGGAATGGAAATAC 59.175 41.667 0.00 0.00 38.35 1.89
1555 1841 4.827284 CCGCCTATTTGGAATGGAAATACT 59.173 41.667 0.00 0.00 38.35 2.12
1556 1842 5.048713 CCGCCTATTTGGAATGGAAATACTC 60.049 44.000 0.00 0.00 38.35 2.59
1557 1843 5.048713 CGCCTATTTGGAATGGAAATACTCC 60.049 44.000 0.00 0.00 40.87 3.85
1558 1844 6.071320 GCCTATTTGGAATGGAAATACTCCT 58.929 40.000 0.00 0.00 41.01 3.69
1847 2144 9.778741 TGTAACACTGTCTCTCTTTCATTTTAT 57.221 29.630 0.00 0.00 0.00 1.40
1966 2263 5.512753 TTTTTGCTATGCAGAACACTTCA 57.487 34.783 0.00 0.00 40.61 3.02
2069 2366 2.280628 GGAGCACTCTTTGTTATCCCG 58.719 52.381 0.00 0.00 0.00 5.14
2262 2584 5.744171 ACAAGCAACTTTTTCCTGGAATTT 58.256 33.333 10.45 0.00 0.00 1.82
2576 2900 8.553696 ACAAAACATTCTACTAGTTTACCAACG 58.446 33.333 0.00 0.00 38.03 4.10
2811 3136 5.795766 TCTTAAATGATGATTCGCGTTGAC 58.204 37.500 5.77 0.00 0.00 3.18
2868 3193 2.450609 TACTGCACCTTTCGAGGTTC 57.549 50.000 0.00 0.00 40.85 3.62
3024 3400 8.918961 TTAATTGACCCAAGTTAATAAATGCG 57.081 30.769 0.00 0.00 31.41 4.73
3110 3493 2.827322 CCCTTCCATGATTTGCTGTTGA 59.173 45.455 0.00 0.00 0.00 3.18
3148 3531 8.706492 AGTTATGGTGCAATGATTTTGTTATG 57.294 30.769 0.00 0.00 0.00 1.90
3411 3799 5.163992 TGTTTCTTATTCGCTAGCTTTGTCG 60.164 40.000 13.93 0.00 0.00 4.35
3447 3836 9.178758 ACATCTGATTTTCCTACTTGTATTTCC 57.821 33.333 0.00 0.00 0.00 3.13
3724 4121 1.267574 TGGTGATGAGGACTGCTCCC 61.268 60.000 0.00 0.00 37.25 4.30
3941 4339 7.270047 ACTTTTCATATTGATTCCTTGCATGG 58.730 34.615 12.41 12.41 0.00 3.66
4081 4483 3.713248 TCATCTGGCTCATACTGTCCATT 59.287 43.478 0.00 0.00 0.00 3.16
4082 4484 4.164796 TCATCTGGCTCATACTGTCCATTT 59.835 41.667 0.00 0.00 0.00 2.32
4095 4497 9.123902 CATACTGTCCATTTTCTCCATGAATTA 57.876 33.333 0.00 0.00 34.24 1.40
4096 4498 7.636150 ACTGTCCATTTTCTCCATGAATTAG 57.364 36.000 0.00 0.00 34.24 1.73
4097 4499 6.096001 ACTGTCCATTTTCTCCATGAATTAGC 59.904 38.462 0.00 0.00 34.24 3.09
4105 4507 4.722220 TCTCCATGAATTAGCCTTGATGG 58.278 43.478 0.00 4.13 40.16 3.51
4214 4628 2.352715 CGTGTCACAGCTGATTACTCCA 60.353 50.000 23.35 3.90 0.00 3.86
4253 4673 7.559335 AGAGTGGCATTCTATGTCCAATATA 57.441 36.000 11.16 0.00 37.89 0.86
4311 4732 4.330074 CCAAGAGATGGTGAATTGTACGAC 59.670 45.833 0.00 0.00 44.85 4.34
4317 4738 3.342719 TGGTGAATTGTACGACATGCAT 58.657 40.909 0.00 0.00 0.00 3.96
4322 4743 6.458206 GGTGAATTGTACGACATGCATAACAT 60.458 38.462 0.00 0.00 40.66 2.71
4736 5157 2.224066 CGTGAACTGAGGAAGAACTGGT 60.224 50.000 0.00 0.00 0.00 4.00
4757 5178 1.276705 GTGTTCTTCCCTCCTCTGTCC 59.723 57.143 0.00 0.00 0.00 4.02
4758 5179 0.906066 GTTCTTCCCTCCTCTGTCCC 59.094 60.000 0.00 0.00 0.00 4.46
4759 5180 0.793617 TTCTTCCCTCCTCTGTCCCT 59.206 55.000 0.00 0.00 0.00 4.20
4760 5181 0.041833 TCTTCCCTCCTCTGTCCCTG 59.958 60.000 0.00 0.00 0.00 4.45
4761 5182 0.980231 CTTCCCTCCTCTGTCCCTGG 60.980 65.000 0.00 0.00 0.00 4.45
4762 5183 1.452226 TTCCCTCCTCTGTCCCTGGA 61.452 60.000 0.00 0.00 0.00 3.86
4763 5184 1.231751 TCCCTCCTCTGTCCCTGGAT 61.232 60.000 0.00 0.00 0.00 3.41
4764 5185 0.563173 CCCTCCTCTGTCCCTGGATA 59.437 60.000 0.00 0.00 0.00 2.59
4765 5186 1.062121 CCCTCCTCTGTCCCTGGATAA 60.062 57.143 0.00 0.00 0.00 1.75
4766 5187 2.324541 CCTCCTCTGTCCCTGGATAAG 58.675 57.143 0.00 0.00 0.00 1.73
4767 5188 2.359781 CCTCCTCTGTCCCTGGATAAGT 60.360 54.545 0.00 0.00 0.00 2.24
4768 5189 2.697751 CTCCTCTGTCCCTGGATAAGTG 59.302 54.545 0.00 0.00 0.00 3.16
4769 5190 1.139853 CCTCTGTCCCTGGATAAGTGC 59.860 57.143 0.00 0.00 0.00 4.40
4770 5191 1.139853 CTCTGTCCCTGGATAAGTGCC 59.860 57.143 0.00 0.00 0.00 5.01
4771 5192 0.911769 CTGTCCCTGGATAAGTGCCA 59.088 55.000 0.00 0.00 0.00 4.92
4787 5208 1.298014 CCAGAACTCAGAGGGTGGC 59.702 63.158 1.53 0.00 0.00 5.01
4794 5215 1.229625 TCAGAGGGTGGCCAGTCAT 60.230 57.895 5.11 0.00 0.00 3.06
4814 5235 4.408270 TCATCTCCAGCTGCTTCTCTAATT 59.592 41.667 8.66 0.00 0.00 1.40
4848 5272 5.895636 TCTTCTCTGTTTCTTTGTTTGCA 57.104 34.783 0.00 0.00 0.00 4.08
4882 5306 3.340814 AACATCTCATGCGAAGAAGGT 57.659 42.857 0.00 0.00 0.00 3.50
4889 5313 5.111989 TCTCATGCGAAGAAGGTAGAAATG 58.888 41.667 0.00 0.00 0.00 2.32
4900 5324 6.289064 AGAAGGTAGAAATGTCGAAGTTGTT 58.711 36.000 0.00 0.00 0.00 2.83
4901 5325 5.924475 AGGTAGAAATGTCGAAGTTGTTG 57.076 39.130 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.838486 CGACAGCGACGAGGAGGC 62.838 72.222 0.00 0.00 40.82 4.70
34 35 3.384014 GACGACAGCGACGAGGAGG 62.384 68.421 0.00 0.00 41.64 4.30
35 36 2.098680 GACGACAGCGACGAGGAG 59.901 66.667 0.00 0.00 41.64 3.69
44 45 4.386245 GTCATCCTCGACGACAGC 57.614 61.111 0.00 0.00 0.00 4.40
90 92 0.103937 CCTCAAGGAGATCGCCACTC 59.896 60.000 18.44 0.00 37.39 3.51
91 93 1.333636 CCCTCAAGGAGATCGCCACT 61.334 60.000 18.44 1.03 38.24 4.00
93 95 2.735772 GCCCTCAAGGAGATCGCCA 61.736 63.158 18.44 0.00 38.24 5.69
120 122 2.517166 GGGAGGAAATGGAGCGCC 60.517 66.667 2.29 0.00 0.00 6.53
136 138 4.233635 CGAGACGACTACGCCCGG 62.234 72.222 0.00 0.00 43.96 5.73
140 142 1.225963 GGACACGAGACGACTACGC 60.226 63.158 0.00 0.00 43.96 4.42
141 143 0.179230 GTGGACACGAGACGACTACG 60.179 60.000 0.00 0.00 45.75 3.51
151 153 2.741092 GGCCTCAAGTGGACACGA 59.259 61.111 0.00 0.00 34.56 4.35
154 156 2.847234 ACCGGCCTCAAGTGGACA 60.847 61.111 0.00 0.00 33.86 4.02
156 158 2.203788 AGACCGGCCTCAAGTGGA 60.204 61.111 0.00 0.00 0.00 4.02
193 195 1.873591 GTCGTCAAACAGGAGCACATT 59.126 47.619 0.00 0.00 0.00 2.71
204 206 2.654912 CCGCCTGTCGTCGTCAAAC 61.655 63.158 0.00 0.00 36.19 2.93
224 226 1.006102 CGAATAAGGAGCCGGCGAT 60.006 57.895 23.20 3.63 0.00 4.58
250 252 2.587194 CGCTCCCATCTTCGCCTG 60.587 66.667 0.00 0.00 0.00 4.85
292 294 2.128035 CTCATCATAAACGAGGGTCGC 58.872 52.381 0.00 0.00 45.12 5.19
324 326 3.069980 GAGATGTCGGAGCGCTGGT 62.070 63.158 18.48 0.00 0.00 4.00
325 327 2.279120 GAGATGTCGGAGCGCTGG 60.279 66.667 18.48 6.70 0.00 4.85
327 329 1.140589 CAAGAGATGTCGGAGCGCT 59.859 57.895 11.27 11.27 0.00 5.92
328 330 1.880340 CCAAGAGATGTCGGAGCGC 60.880 63.158 0.00 0.00 0.00 5.92
329 331 1.227089 CCCAAGAGATGTCGGAGCG 60.227 63.158 0.00 0.00 0.00 5.03
330 332 1.144936 CCCCAAGAGATGTCGGAGC 59.855 63.158 0.00 0.00 0.00 4.70
331 333 1.144936 GCCCCAAGAGATGTCGGAG 59.855 63.158 0.00 0.00 0.00 4.63
332 334 1.306141 AGCCCCAAGAGATGTCGGA 60.306 57.895 0.00 0.00 0.00 4.55
333 335 1.144936 GAGCCCCAAGAGATGTCGG 59.855 63.158 0.00 0.00 0.00 4.79
334 336 0.179089 CTGAGCCCCAAGAGATGTCG 60.179 60.000 0.00 0.00 0.00 4.35
335 337 0.463474 GCTGAGCCCCAAGAGATGTC 60.463 60.000 0.00 0.00 0.00 3.06
336 338 1.606531 GCTGAGCCCCAAGAGATGT 59.393 57.895 0.00 0.00 0.00 3.06
337 339 1.153005 GGCTGAGCCCCAAGAGATG 60.153 63.158 13.77 0.00 44.06 2.90
338 340 3.329093 GGCTGAGCCCCAAGAGAT 58.671 61.111 13.77 0.00 44.06 2.75
363 365 4.308458 CCCCGACACTGTTCGCCA 62.308 66.667 6.80 0.00 37.70 5.69
365 367 4.309950 ACCCCCGACACTGTTCGC 62.310 66.667 6.80 0.00 37.70 4.70
449 496 4.174129 GGTCGAAATTGGCGCCGG 62.174 66.667 23.90 0.00 0.00 6.13
455 502 1.375551 CCGGTTAGGGTCGAAATTGG 58.624 55.000 0.00 0.00 35.97 3.16
464 511 2.635714 CTAAATTTCGCCGGTTAGGGT 58.364 47.619 1.90 0.00 41.48 4.34
465 512 1.944709 CCTAAATTTCGCCGGTTAGGG 59.055 52.381 15.38 0.18 39.21 3.53
474 521 1.943340 CTCCAGGAGCCTAAATTTCGC 59.057 52.381 2.60 0.00 0.00 4.70
488 535 1.142748 GTCCAGTCGCATCTCCAGG 59.857 63.158 0.00 0.00 0.00 4.45
489 536 1.142748 GGTCCAGTCGCATCTCCAG 59.857 63.158 0.00 0.00 0.00 3.86
493 540 0.537188 AAATCGGTCCAGTCGCATCT 59.463 50.000 0.00 0.00 0.00 2.90
494 541 1.369625 AAAATCGGTCCAGTCGCATC 58.630 50.000 0.00 0.00 0.00 3.91
495 542 1.821216 AAAAATCGGTCCAGTCGCAT 58.179 45.000 0.00 0.00 0.00 4.73
496 543 3.315765 AAAAATCGGTCCAGTCGCA 57.684 47.368 0.00 0.00 0.00 5.10
517 564 1.405463 CCCCTTTTTAATCGCTGGCTC 59.595 52.381 0.00 0.00 0.00 4.70
522 569 2.235402 TCGAGACCCCTTTTTAATCGCT 59.765 45.455 0.00 0.00 0.00 4.93
524 571 3.195661 CCTCGAGACCCCTTTTTAATCG 58.804 50.000 15.71 0.00 0.00 3.34
527 574 1.631898 CCCCTCGAGACCCCTTTTTAA 59.368 52.381 15.71 0.00 0.00 1.52
560 607 1.965414 TTATGAGCTTCTCCACCCCA 58.035 50.000 0.00 0.00 0.00 4.96
561 608 2.856222 CATTATGAGCTTCTCCACCCC 58.144 52.381 0.00 0.00 0.00 4.95
563 610 3.205784 AGCATTATGAGCTTCTCCACC 57.794 47.619 0.00 0.00 39.87 4.61
567 614 9.434420 AGATGTATTTAGCATTATGAGCTTCTC 57.566 33.333 0.00 0.00 43.25 2.87
597 644 2.787249 CAACCGCCGCAGATGAAG 59.213 61.111 0.00 0.00 0.00 3.02
598 645 2.514510 TAGCAACCGCCGCAGATGAA 62.515 55.000 0.00 0.00 39.83 2.57
599 646 2.310327 ATAGCAACCGCCGCAGATGA 62.310 55.000 0.00 0.00 39.83 2.92
600 647 1.439353 AATAGCAACCGCCGCAGATG 61.439 55.000 0.00 0.00 39.83 2.90
601 648 1.153168 AATAGCAACCGCCGCAGAT 60.153 52.632 0.00 0.00 39.83 2.90
602 649 1.813753 GAATAGCAACCGCCGCAGA 60.814 57.895 0.00 0.00 39.83 4.26
603 650 1.815421 AGAATAGCAACCGCCGCAG 60.815 57.895 0.00 0.00 39.83 5.18
604 651 2.106074 CAGAATAGCAACCGCCGCA 61.106 57.895 0.00 0.00 39.83 5.69
605 652 2.709475 CAGAATAGCAACCGCCGC 59.291 61.111 0.00 0.00 39.83 6.53
606 653 1.449601 ACCAGAATAGCAACCGCCG 60.450 57.895 0.00 0.00 39.83 6.46
607 654 1.993369 GCACCAGAATAGCAACCGCC 61.993 60.000 0.00 0.00 39.83 6.13
608 655 1.429423 GCACCAGAATAGCAACCGC 59.571 57.895 0.00 0.00 38.99 5.68
609 656 1.715585 CGCACCAGAATAGCAACCG 59.284 57.895 0.00 0.00 0.00 4.44
610 657 1.026718 AGCGCACCAGAATAGCAACC 61.027 55.000 11.47 0.00 0.00 3.77
611 658 0.097674 CAGCGCACCAGAATAGCAAC 59.902 55.000 11.47 0.00 0.00 4.17
612 659 1.026182 CCAGCGCACCAGAATAGCAA 61.026 55.000 11.47 0.00 0.00 3.91
613 660 1.450134 CCAGCGCACCAGAATAGCA 60.450 57.895 11.47 0.00 0.00 3.49
614 661 1.432270 GACCAGCGCACCAGAATAGC 61.432 60.000 11.47 0.00 0.00 2.97
615 662 0.811616 GGACCAGCGCACCAGAATAG 60.812 60.000 11.47 0.00 0.00 1.73
616 663 1.220749 GGACCAGCGCACCAGAATA 59.779 57.895 11.47 0.00 0.00 1.75
617 664 1.264749 TAGGACCAGCGCACCAGAAT 61.265 55.000 11.47 0.00 0.00 2.40
618 665 1.911269 TAGGACCAGCGCACCAGAA 60.911 57.895 11.47 0.00 0.00 3.02
619 666 2.283604 TAGGACCAGCGCACCAGA 60.284 61.111 11.47 0.00 0.00 3.86
620 667 2.125512 GTAGGACCAGCGCACCAG 60.126 66.667 11.47 0.00 0.00 4.00
621 668 4.063967 CGTAGGACCAGCGCACCA 62.064 66.667 11.47 0.00 0.00 4.17
632 679 2.062177 GTGCTAAGGCCCCGTAGGA 61.062 63.158 0.00 0.00 45.58 2.94
633 680 2.504519 GTGCTAAGGCCCCGTAGG 59.495 66.667 0.00 0.00 41.97 3.18
634 681 2.106332 CGTGCTAAGGCCCCGTAG 59.894 66.667 0.00 0.00 37.74 3.51
635 682 2.362760 TCGTGCTAAGGCCCCGTA 60.363 61.111 0.00 0.00 37.74 4.02
636 683 4.078516 GTCGTGCTAAGGCCCCGT 62.079 66.667 0.00 0.00 37.74 5.28
638 685 3.766691 TCGTCGTGCTAAGGCCCC 61.767 66.667 0.00 0.00 37.74 5.80
639 686 2.502692 AAGTCGTCGTGCTAAGGCCC 62.503 60.000 0.00 0.00 37.74 5.80
640 687 1.077089 GAAGTCGTCGTGCTAAGGCC 61.077 60.000 0.00 0.00 37.74 5.19
641 688 1.077089 GGAAGTCGTCGTGCTAAGGC 61.077 60.000 0.00 0.00 39.26 4.35
642 689 0.458025 GGGAAGTCGTCGTGCTAAGG 60.458 60.000 0.00 0.00 0.00 2.69
643 690 0.797249 CGGGAAGTCGTCGTGCTAAG 60.797 60.000 0.00 0.00 0.00 2.18
644 691 1.210931 CGGGAAGTCGTCGTGCTAA 59.789 57.895 0.00 0.00 0.00 3.09
645 692 1.672030 TCGGGAAGTCGTCGTGCTA 60.672 57.895 0.00 0.00 0.00 3.49
646 693 2.981909 TCGGGAAGTCGTCGTGCT 60.982 61.111 0.00 0.00 0.00 4.40
647 694 1.915614 TAGTCGGGAAGTCGTCGTGC 61.916 60.000 0.00 0.00 0.00 5.34
648 695 0.731417 ATAGTCGGGAAGTCGTCGTG 59.269 55.000 0.00 0.00 0.00 4.35
649 696 1.012841 GATAGTCGGGAAGTCGTCGT 58.987 55.000 0.00 0.00 0.00 4.34
650 697 1.297664 AGATAGTCGGGAAGTCGTCG 58.702 55.000 0.00 0.00 0.00 5.12
651 698 3.465871 AGTAGATAGTCGGGAAGTCGTC 58.534 50.000 0.00 0.00 0.00 4.20
652 699 3.557228 AGTAGATAGTCGGGAAGTCGT 57.443 47.619 0.00 0.00 0.00 4.34
653 700 4.375272 TGTAGTAGATAGTCGGGAAGTCG 58.625 47.826 0.00 0.00 0.00 4.18
654 701 5.587844 TGTTGTAGTAGATAGTCGGGAAGTC 59.412 44.000 0.00 0.00 0.00 3.01
655 702 5.503927 TGTTGTAGTAGATAGTCGGGAAGT 58.496 41.667 0.00 0.00 0.00 3.01
656 703 6.095160 ACTTGTTGTAGTAGATAGTCGGGAAG 59.905 42.308 0.00 0.00 0.00 3.46
657 704 5.948162 ACTTGTTGTAGTAGATAGTCGGGAA 59.052 40.000 0.00 0.00 0.00 3.97
658 705 5.503927 ACTTGTTGTAGTAGATAGTCGGGA 58.496 41.667 0.00 0.00 0.00 5.14
659 706 5.831702 ACTTGTTGTAGTAGATAGTCGGG 57.168 43.478 0.00 0.00 0.00 5.14
660 707 6.527023 CACAACTTGTTGTAGTAGATAGTCGG 59.473 42.308 17.26 0.00 33.17 4.79
661 708 6.033619 GCACAACTTGTTGTAGTAGATAGTCG 59.966 42.308 17.26 3.97 33.17 4.18
662 709 6.310711 GGCACAACTTGTTGTAGTAGATAGTC 59.689 42.308 17.26 2.73 33.17 2.59
663 710 6.164176 GGCACAACTTGTTGTAGTAGATAGT 58.836 40.000 17.26 0.00 33.17 2.12
664 711 5.581085 GGGCACAACTTGTTGTAGTAGATAG 59.419 44.000 17.26 5.63 33.17 2.08
665 712 5.484715 GGGCACAACTTGTTGTAGTAGATA 58.515 41.667 17.26 0.00 33.17 1.98
666 713 4.324267 GGGCACAACTTGTTGTAGTAGAT 58.676 43.478 17.26 0.00 33.17 1.98
667 714 3.495453 GGGGCACAACTTGTTGTAGTAGA 60.495 47.826 17.26 0.00 33.17 2.59
668 715 2.812011 GGGGCACAACTTGTTGTAGTAG 59.188 50.000 17.26 7.80 33.17 2.57
669 716 2.172930 TGGGGCACAACTTGTTGTAGTA 59.827 45.455 17.26 2.56 33.17 1.82
670 717 1.064314 TGGGGCACAACTTGTTGTAGT 60.064 47.619 17.26 0.00 33.17 2.73
671 718 1.686355 TGGGGCACAACTTGTTGTAG 58.314 50.000 17.26 12.96 33.17 2.74
672 719 2.373335 ATGGGGCACAACTTGTTGTA 57.627 45.000 17.26 4.03 33.17 2.41
673 720 1.412343 GAATGGGGCACAACTTGTTGT 59.588 47.619 12.73 12.73 35.14 3.32
674 721 1.270252 GGAATGGGGCACAACTTGTTG 60.270 52.381 11.44 11.44 0.00 3.33
675 722 1.047801 GGAATGGGGCACAACTTGTT 58.952 50.000 0.00 0.00 0.00 2.83
676 723 1.178534 CGGAATGGGGCACAACTTGT 61.179 55.000 0.00 0.00 0.00 3.16
677 724 1.586028 CGGAATGGGGCACAACTTG 59.414 57.895 0.00 0.00 0.00 3.16
678 725 1.606313 CCGGAATGGGGCACAACTT 60.606 57.895 0.00 0.00 0.00 2.66
679 726 2.035626 CCGGAATGGGGCACAACT 59.964 61.111 0.00 0.00 0.00 3.16
687 734 2.281070 CTCCATCGCCGGAATGGG 60.281 66.667 27.02 17.74 38.63 4.00
688 735 2.281070 CCTCCATCGCCGGAATGG 60.281 66.667 23.68 23.68 42.50 3.16
689 736 2.281070 CCCTCCATCGCCGGAATG 60.281 66.667 5.05 8.09 33.65 2.67
690 737 3.560251 CCCCTCCATCGCCGGAAT 61.560 66.667 5.05 0.00 33.65 3.01
695 742 4.996434 CATCGCCCCTCCATCGCC 62.996 72.222 0.00 0.00 0.00 5.54
696 743 3.928779 TCATCGCCCCTCCATCGC 61.929 66.667 0.00 0.00 0.00 4.58
697 744 2.029666 GTCATCGCCCCTCCATCG 59.970 66.667 0.00 0.00 0.00 3.84
698 745 2.029666 CGTCATCGCCCCTCCATC 59.970 66.667 0.00 0.00 0.00 3.51
699 746 3.550431 CCGTCATCGCCCCTCCAT 61.550 66.667 0.00 0.00 35.54 3.41
725 772 2.734673 GCACTGAAGCGAGCCGAAG 61.735 63.158 0.00 0.00 0.00 3.79
726 773 2.738521 GCACTGAAGCGAGCCGAA 60.739 61.111 0.00 0.00 0.00 4.30
727 774 3.684990 AGCACTGAAGCGAGCCGA 61.685 61.111 0.00 0.00 40.15 5.54
728 775 3.485431 CAGCACTGAAGCGAGCCG 61.485 66.667 0.00 0.00 40.15 5.52
729 776 2.507110 TACCAGCACTGAAGCGAGCC 62.507 60.000 0.00 0.00 40.15 4.70
730 777 1.079819 TACCAGCACTGAAGCGAGC 60.080 57.895 0.00 0.00 40.15 5.03
731 778 0.244994 ACTACCAGCACTGAAGCGAG 59.755 55.000 0.00 0.00 40.15 5.03
732 779 0.243907 GACTACCAGCACTGAAGCGA 59.756 55.000 0.00 0.00 40.15 4.93
733 780 1.073216 CGACTACCAGCACTGAAGCG 61.073 60.000 0.00 1.97 40.15 4.68
734 781 1.355066 GCGACTACCAGCACTGAAGC 61.355 60.000 0.00 0.00 0.00 3.86
735 782 0.737715 GGCGACTACCAGCACTGAAG 60.738 60.000 0.00 0.00 34.54 3.02
736 783 1.292223 GGCGACTACCAGCACTGAA 59.708 57.895 0.00 0.00 34.54 3.02
737 784 2.970639 GGCGACTACCAGCACTGA 59.029 61.111 0.00 0.00 34.54 3.41
738 785 2.507102 CGGCGACTACCAGCACTG 60.507 66.667 0.00 0.00 34.54 3.66
739 786 4.436998 GCGGCGACTACCAGCACT 62.437 66.667 12.98 0.00 34.54 4.40
740 787 2.938539 CTAGCGGCGACTACCAGCAC 62.939 65.000 12.98 0.00 33.49 4.40
741 788 2.752640 TAGCGGCGACTACCAGCA 60.753 61.111 12.98 0.00 33.49 4.41
742 789 2.026301 CTAGCGGCGACTACCAGC 59.974 66.667 12.98 0.00 0.00 4.85
743 790 2.119655 ACCTAGCGGCGACTACCAG 61.120 63.158 12.98 1.90 0.00 4.00
744 791 2.044650 ACCTAGCGGCGACTACCA 60.045 61.111 12.98 0.00 0.00 3.25
745 792 2.412112 CACCTAGCGGCGACTACC 59.588 66.667 12.98 0.00 0.00 3.18
746 793 2.333706 GACCACCTAGCGGCGACTAC 62.334 65.000 12.98 0.00 0.00 2.73
747 794 2.044650 ACCACCTAGCGGCGACTA 60.045 61.111 12.98 10.99 0.00 2.59
748 795 2.547640 TAGACCACCTAGCGGCGACT 62.548 60.000 12.98 10.32 0.00 4.18
749 796 1.453762 ATAGACCACCTAGCGGCGAC 61.454 60.000 12.98 1.23 0.00 5.19
750 797 1.152819 ATAGACCACCTAGCGGCGA 60.153 57.895 12.98 0.00 0.00 5.54
751 798 1.007271 CATAGACCACCTAGCGGCG 60.007 63.158 0.51 0.51 0.00 6.46
752 799 1.113517 TCCATAGACCACCTAGCGGC 61.114 60.000 0.00 0.00 0.00 6.53
753 800 1.546476 GATCCATAGACCACCTAGCGG 59.454 57.143 0.00 0.00 0.00 5.52
754 801 2.230025 CAGATCCATAGACCACCTAGCG 59.770 54.545 0.00 0.00 0.00 4.26
755 802 2.564947 CCAGATCCATAGACCACCTAGC 59.435 54.545 0.00 0.00 0.00 3.42
756 803 4.119556 TCCAGATCCATAGACCACCTAG 57.880 50.000 0.00 0.00 0.00 3.02
757 804 4.140686 ACATCCAGATCCATAGACCACCTA 60.141 45.833 0.00 0.00 0.00 3.08
758 805 3.246301 CATCCAGATCCATAGACCACCT 58.754 50.000 0.00 0.00 0.00 4.00
759 806 2.975489 ACATCCAGATCCATAGACCACC 59.025 50.000 0.00 0.00 0.00 4.61
760 807 5.808366 TTACATCCAGATCCATAGACCAC 57.192 43.478 0.00 0.00 0.00 4.16
761 808 7.392766 AAATTACATCCAGATCCATAGACCA 57.607 36.000 0.00 0.00 0.00 4.02
762 809 8.697507 AAAAATTACATCCAGATCCATAGACC 57.302 34.615 0.00 0.00 0.00 3.85
787 834 9.037737 GCAGTACAACGAATACCAGAAATAATA 57.962 33.333 0.00 0.00 0.00 0.98
788 835 7.012044 GGCAGTACAACGAATACCAGAAATAAT 59.988 37.037 0.00 0.00 0.00 1.28
789 836 6.314400 GGCAGTACAACGAATACCAGAAATAA 59.686 38.462 0.00 0.00 0.00 1.40
790 837 5.813672 GGCAGTACAACGAATACCAGAAATA 59.186 40.000 0.00 0.00 0.00 1.40
791 838 4.634443 GGCAGTACAACGAATACCAGAAAT 59.366 41.667 0.00 0.00 0.00 2.17
792 839 3.998341 GGCAGTACAACGAATACCAGAAA 59.002 43.478 0.00 0.00 0.00 2.52
793 840 3.007074 TGGCAGTACAACGAATACCAGAA 59.993 43.478 0.00 0.00 0.00 3.02
794 841 2.563620 TGGCAGTACAACGAATACCAGA 59.436 45.455 0.00 0.00 0.00 3.86
795 842 2.967362 TGGCAGTACAACGAATACCAG 58.033 47.619 0.00 0.00 0.00 4.00
796 843 3.055747 TCATGGCAGTACAACGAATACCA 60.056 43.478 0.00 0.00 0.00 3.25
797 844 3.527533 TCATGGCAGTACAACGAATACC 58.472 45.455 0.00 0.00 0.00 2.73
798 845 5.734855 AATCATGGCAGTACAACGAATAC 57.265 39.130 0.00 0.00 0.00 1.89
799 846 7.766738 TCTTTAATCATGGCAGTACAACGAATA 59.233 33.333 0.00 0.00 0.00 1.75
800 847 6.597672 TCTTTAATCATGGCAGTACAACGAAT 59.402 34.615 0.00 0.00 0.00 3.34
801 848 5.935206 TCTTTAATCATGGCAGTACAACGAA 59.065 36.000 0.00 0.00 0.00 3.85
802 849 5.483811 TCTTTAATCATGGCAGTACAACGA 58.516 37.500 0.00 0.00 0.00 3.85
803 850 5.794687 TCTTTAATCATGGCAGTACAACG 57.205 39.130 0.00 0.00 0.00 4.10
804 851 6.095440 ACCATCTTTAATCATGGCAGTACAAC 59.905 38.462 11.49 0.00 43.16 3.32
805 852 6.095300 CACCATCTTTAATCATGGCAGTACAA 59.905 38.462 11.49 0.00 43.16 2.41
806 853 5.589855 CACCATCTTTAATCATGGCAGTACA 59.410 40.000 11.49 0.00 43.16 2.90
807 854 5.506317 GCACCATCTTTAATCATGGCAGTAC 60.506 44.000 11.49 0.00 43.16 2.73
808 855 4.580167 GCACCATCTTTAATCATGGCAGTA 59.420 41.667 11.49 0.00 43.16 2.74
809 856 3.382546 GCACCATCTTTAATCATGGCAGT 59.617 43.478 11.49 0.00 43.16 4.40
810 857 3.243636 GGCACCATCTTTAATCATGGCAG 60.244 47.826 11.49 7.22 43.16 4.85
811 858 2.694628 GGCACCATCTTTAATCATGGCA 59.305 45.455 11.49 0.00 43.16 4.92
812 859 2.694628 TGGCACCATCTTTAATCATGGC 59.305 45.455 11.49 0.00 43.16 4.40
813 860 4.585581 TCATGGCACCATCTTTAATCATGG 59.414 41.667 0.00 10.39 44.68 3.66
814 861 5.777850 TCATGGCACCATCTTTAATCATG 57.222 39.130 0.00 0.00 33.90 3.07
815 862 6.551975 TCAATCATGGCACCATCTTTAATCAT 59.448 34.615 0.00 0.00 33.90 2.45
816 863 5.892686 TCAATCATGGCACCATCTTTAATCA 59.107 36.000 0.00 0.00 33.90 2.57
817 864 6.395426 TCAATCATGGCACCATCTTTAATC 57.605 37.500 0.00 0.00 33.90 1.75
818 865 6.608405 TCTTCAATCATGGCACCATCTTTAAT 59.392 34.615 0.00 0.00 33.90 1.40
819 866 5.951148 TCTTCAATCATGGCACCATCTTTAA 59.049 36.000 0.00 0.00 33.90 1.52
820 867 5.508567 TCTTCAATCATGGCACCATCTTTA 58.491 37.500 0.00 0.00 33.90 1.85
821 868 4.346730 TCTTCAATCATGGCACCATCTTT 58.653 39.130 0.00 0.00 33.90 2.52
822 869 3.972133 TCTTCAATCATGGCACCATCTT 58.028 40.909 0.00 0.00 33.90 2.40
823 870 3.657398 TCTTCAATCATGGCACCATCT 57.343 42.857 0.00 0.00 33.90 2.90
824 871 3.887110 TCATCTTCAATCATGGCACCATC 59.113 43.478 0.00 0.00 33.90 3.51
825 872 3.905968 TCATCTTCAATCATGGCACCAT 58.094 40.909 0.00 0.00 37.08 3.55
826 873 3.369242 TCATCTTCAATCATGGCACCA 57.631 42.857 0.00 0.00 0.00 4.17
827 874 4.931661 ATTCATCTTCAATCATGGCACC 57.068 40.909 0.00 0.00 0.00 5.01
828 875 6.872628 TCTATTCATCTTCAATCATGGCAC 57.127 37.500 0.00 0.00 0.00 5.01
829 876 7.722285 TCAATCTATTCATCTTCAATCATGGCA 59.278 33.333 0.00 0.00 0.00 4.92
830 877 8.107399 TCAATCTATTCATCTTCAATCATGGC 57.893 34.615 0.00 0.00 0.00 4.40
871 918 3.066760 CGAACAAGCTTGTCCCTCTTTTT 59.933 43.478 31.20 13.23 41.31 1.94
872 919 2.618709 CGAACAAGCTTGTCCCTCTTTT 59.381 45.455 31.20 13.99 41.31 2.27
873 920 2.222027 CGAACAAGCTTGTCCCTCTTT 58.778 47.619 31.20 14.76 41.31 2.52
874 921 1.543429 CCGAACAAGCTTGTCCCTCTT 60.543 52.381 31.20 15.52 41.31 2.85
886 933 3.665675 CTCCCTCGGCCCGAACAAG 62.666 68.421 7.50 0.23 34.74 3.16
889 936 2.757099 TACTCCCTCGGCCCGAAC 60.757 66.667 7.50 0.00 34.74 3.95
894 941 3.851128 GGCAGTACTCCCTCGGCC 61.851 72.222 0.00 0.00 37.69 6.13
895 942 2.760385 AGGCAGTACTCCCTCGGC 60.760 66.667 0.00 0.00 0.00 5.54
896 943 3.082579 GCAGGCAGTACTCCCTCGG 62.083 68.421 0.99 0.00 0.00 4.63
897 944 1.608717 AAGCAGGCAGTACTCCCTCG 61.609 60.000 0.99 0.08 0.00 4.63
898 945 0.615850 AAAGCAGGCAGTACTCCCTC 59.384 55.000 0.99 0.00 0.00 4.30
909 956 3.620761 ACGTAAAAACGTAAAAGCAGGC 58.379 40.909 1.09 0.00 45.19 4.85
914 961 6.177137 GGGCAAAAACGTAAAAACGTAAAAG 58.823 36.000 3.77 0.00 46.41 2.27
921 968 2.282026 CCACGGGCAAAAACGTAAAAAC 59.718 45.455 0.00 0.00 42.04 2.43
1003 1270 1.186200 CTGCTGGACTGCTAGTACCA 58.814 55.000 2.94 0.00 0.00 3.25
1087 1354 0.468648 CGGGATAGGGGTGAGGAAAC 59.531 60.000 0.00 0.00 0.00 2.78
1145 1412 1.519751 CCTCGATCGCGGAAGGAGAT 61.520 60.000 19.37 0.00 37.93 2.75
1385 1664 8.709386 TCTATTTTAGCAGATTTCTCACAGTC 57.291 34.615 0.00 0.00 0.00 3.51
1451 1730 9.036671 GGCTCTTCTACTTTGACATAGATAAAC 57.963 37.037 0.00 0.00 0.00 2.01
1461 1740 6.517605 CCCTATAAGGCTCTTCTACTTTGAC 58.482 44.000 0.00 0.00 32.73 3.18
1462 1741 6.732896 CCCTATAAGGCTCTTCTACTTTGA 57.267 41.667 0.00 0.00 32.73 2.69
1553 1839 4.274978 GAAGCTTCCTCACTAGTAGGAGT 58.725 47.826 15.97 7.28 43.90 3.85
1554 1840 3.314080 CGAAGCTTCCTCACTAGTAGGAG 59.686 52.174 20.62 10.74 43.90 3.69
1555 1841 3.054582 TCGAAGCTTCCTCACTAGTAGGA 60.055 47.826 20.62 13.83 41.47 2.94
1556 1842 3.065648 GTCGAAGCTTCCTCACTAGTAGG 59.934 52.174 20.62 3.61 35.26 3.18
1557 1843 3.942748 AGTCGAAGCTTCCTCACTAGTAG 59.057 47.826 20.62 2.77 0.00 2.57
1558 1844 3.952931 AGTCGAAGCTTCCTCACTAGTA 58.047 45.455 20.62 0.00 0.00 1.82
1719 2005 0.674581 TGCTGCTACTGCCATGACAC 60.675 55.000 0.00 0.00 38.71 3.67
1849 2146 9.482627 GAACAGAATCTTTATCATCCGAATAGT 57.517 33.333 0.00 0.00 0.00 2.12
1952 2249 7.105588 TGTATTACTGATGAAGTGTTCTGCAT 58.894 34.615 0.00 0.00 42.24 3.96
1966 2263 9.601217 GGAACTACTGAACAATGTATTACTGAT 57.399 33.333 0.00 0.00 0.00 2.90
2069 2366 6.929049 CCCTTTTACCTTTGTTTTTGGATCTC 59.071 38.462 0.00 0.00 0.00 2.75
2262 2584 5.057819 TGCAGATAAACAAACGTAACTGGA 58.942 37.500 0.00 0.00 0.00 3.86
2576 2900 1.230324 GGTAAAGCGAGATGATGGCC 58.770 55.000 0.00 0.00 32.00 5.36
2811 3136 5.037385 CAGTCAGGTGATACATCAGTAACG 58.963 45.833 0.00 0.00 37.51 3.18
2907 3232 7.103641 GTCACTTACTGAATTACCATCCAGAA 58.896 38.462 0.00 0.00 0.00 3.02
3006 3382 8.626526 CCTTTATACGCATTTATTAACTTGGGT 58.373 33.333 10.92 10.92 38.56 4.51
3024 3400 5.532406 GGGAAACCGGAAATACCCTTTATAC 59.468 44.000 9.46 0.00 43.64 1.47
3086 3469 2.827921 ACAGCAAATCATGGAAGGGAAC 59.172 45.455 0.00 0.00 0.00 3.62
3148 3531 6.699575 AGAAATACATGGGCACTATTCAAC 57.300 37.500 0.00 0.00 0.00 3.18
3268 3655 6.151691 TGTGCAAATATCTTTTGTCTTGCTC 58.848 36.000 6.21 3.51 39.82 4.26
3411 3799 5.070313 AGGAAAATCAGATGTAGCTCTCCTC 59.930 44.000 0.00 0.00 0.00 3.71
3447 3836 8.208718 TCCTGAACGAAAAGTATAATGGAATG 57.791 34.615 0.00 0.00 0.00 2.67
3522 3911 0.174162 AAGCGCGTCGGGTTAGTATT 59.826 50.000 8.43 0.00 0.00 1.89
3634 4029 0.888736 CGCATGGGTTCACACTTGGA 60.889 55.000 0.68 0.00 0.00 3.53
3706 4103 1.524482 GGGAGCAGTCCTCATCACC 59.476 63.158 0.00 0.00 43.36 4.02
3941 4339 1.276421 TGGAGTAAAGCCTCTCACTGC 59.724 52.381 0.00 0.00 32.93 4.40
4081 4483 5.595542 CCATCAAGGCTAATTCATGGAGAAA 59.404 40.000 0.00 0.00 40.22 2.52
4082 4484 5.103982 TCCATCAAGGCTAATTCATGGAGAA 60.104 40.000 8.10 0.00 35.85 2.87
4095 4497 2.260822 ACTACTGTGTCCATCAAGGCT 58.739 47.619 0.00 0.00 37.29 4.58
4096 4498 2.770164 ACTACTGTGTCCATCAAGGC 57.230 50.000 0.00 0.00 37.29 4.35
4097 4499 7.556844 ACTAATTACTACTGTGTCCATCAAGG 58.443 38.462 0.00 0.00 39.47 3.61
4105 4507 8.954350 TCACCTCTTACTAATTACTACTGTGTC 58.046 37.037 0.00 0.00 0.00 3.67
4214 4628 5.988287 TGCCACTCTTCAAAAAGGAAAAAT 58.012 33.333 0.00 0.00 33.03 1.82
4253 4673 7.481642 AGACAGTAACTGTAATTTCGATCGAT 58.518 34.615 20.18 6.81 45.44 3.59
4311 4732 8.642908 AAAATCTGTCATTGATGTTATGCATG 57.357 30.769 10.16 0.00 38.06 4.06
4716 5137 3.134458 CACCAGTTCTTCCTCAGTTCAC 58.866 50.000 0.00 0.00 0.00 3.18
4736 5157 1.971357 GACAGAGGAGGGAAGAACACA 59.029 52.381 0.00 0.00 0.00 3.72
4759 5180 3.173151 TCTGAGTTCTGGCACTTATCCA 58.827 45.455 0.00 0.00 0.00 3.41
4760 5181 3.431486 CCTCTGAGTTCTGGCACTTATCC 60.431 52.174 3.66 0.00 0.00 2.59
4761 5182 3.431486 CCCTCTGAGTTCTGGCACTTATC 60.431 52.174 3.66 0.00 0.00 1.75
4762 5183 2.503356 CCCTCTGAGTTCTGGCACTTAT 59.497 50.000 3.66 0.00 0.00 1.73
4763 5184 1.902508 CCCTCTGAGTTCTGGCACTTA 59.097 52.381 3.66 0.00 0.00 2.24
4764 5185 0.689623 CCCTCTGAGTTCTGGCACTT 59.310 55.000 3.66 0.00 0.00 3.16
4765 5186 0.472734 ACCCTCTGAGTTCTGGCACT 60.473 55.000 3.66 0.00 0.00 4.40
4766 5187 0.321122 CACCCTCTGAGTTCTGGCAC 60.321 60.000 3.66 0.00 0.00 5.01
4767 5188 1.483595 CCACCCTCTGAGTTCTGGCA 61.484 60.000 3.66 0.00 0.00 4.92
4768 5189 1.298014 CCACCCTCTGAGTTCTGGC 59.702 63.158 3.66 0.00 0.00 4.85
4769 5190 1.298014 GCCACCCTCTGAGTTCTGG 59.702 63.158 3.66 6.11 0.00 3.86
4770 5191 1.298014 GGCCACCCTCTGAGTTCTG 59.702 63.158 0.00 0.00 0.00 3.02
4771 5192 1.152030 TGGCCACCCTCTGAGTTCT 60.152 57.895 0.00 0.00 0.00 3.01
4772 5193 1.298014 CTGGCCACCCTCTGAGTTC 59.702 63.158 0.00 0.00 0.00 3.01
4773 5194 1.462238 ACTGGCCACCCTCTGAGTT 60.462 57.895 0.00 0.00 0.00 3.01
4774 5195 1.915769 GACTGGCCACCCTCTGAGT 60.916 63.158 0.00 0.00 0.00 3.41
4787 5208 0.252479 AAGCAGCTGGAGATGACTGG 59.748 55.000 17.12 0.00 32.25 4.00
4794 5215 4.469227 AGAAATTAGAGAAGCAGCTGGAGA 59.531 41.667 17.12 0.00 0.00 3.71
4814 5235 5.991933 AACAGAGAAGATGAGCAGTAGAA 57.008 39.130 0.00 0.00 0.00 2.10
4848 5272 6.625300 GCATGAGATGTTTGCAAAGAGAGAAT 60.625 38.462 13.26 2.07 36.40 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.