Multiple sequence alignment - TraesCS5B01G182700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G182700 chr5B 100.000 4157 0 0 1 4157 332439673 332435517 0.000000e+00 7677.0
1 TraesCS5B01G182700 chr5B 82.752 487 61 15 6 473 245682587 245682105 2.990000e-111 412.0
2 TraesCS5B01G182700 chr5A 94.256 1828 80 14 2353 4157 384215161 384213336 0.000000e+00 2771.0
3 TraesCS5B01G182700 chr5A 87.741 726 45 14 707 1403 384217212 384216502 0.000000e+00 808.0
4 TraesCS5B01G182700 chr5A 84.692 699 81 9 1 673 384218079 384217381 0.000000e+00 675.0
5 TraesCS5B01G182700 chr5A 87.692 390 39 4 1535 1923 384216502 384216121 2.950000e-121 446.0
6 TraesCS5B01G182700 chr5D 92.501 1827 88 15 2353 4157 291886637 291884838 0.000000e+00 2569.0
7 TraesCS5B01G182700 chr5D 93.988 682 34 4 725 1402 291888194 291887516 0.000000e+00 1026.0
8 TraesCS5B01G182700 chr5D 83.267 759 88 13 1 728 291900219 291899469 0.000000e+00 662.0
9 TraesCS5B01G182700 chr5D 86.463 458 51 8 1537 1991 291887515 291887066 3.730000e-135 492.0
10 TraesCS5B01G182700 chr5D 85.827 127 17 1 2367 2493 53581175 53581050 2.610000e-27 134.0
11 TraesCS5B01G182700 chr4D 82.261 637 79 23 1 605 113150686 113151320 1.710000e-143 520.0
12 TraesCS5B01G182700 chr7D 82.132 638 73 11 1 597 629821905 629822542 3.710000e-140 508.0
13 TraesCS5B01G182700 chr7D 94.872 39 1 1 1484 1521 385519697 385519659 4.490000e-05 60.2
14 TraesCS5B01G182700 chr2D 81.874 651 74 22 1 609 627646243 627645595 3.710000e-140 508.0
15 TraesCS5B01G182700 chr2D 80.920 587 77 20 1 558 272245012 272244432 8.260000e-117 431.0
16 TraesCS5B01G182700 chr2D 100.000 33 0 0 1483 1515 619562353 619562385 1.250000e-05 62.1
17 TraesCS5B01G182700 chr2A 78.723 752 112 24 1 725 595018921 595019651 3.790000e-125 459.0
18 TraesCS5B01G182700 chr2A 100.000 33 0 0 1483 1515 559118420 559118452 1.250000e-05 62.1
19 TraesCS5B01G182700 chr1B 82.922 486 62 11 3 471 620549526 620549045 6.430000e-113 418.0
20 TraesCS5B01G182700 chr1B 76.304 671 99 28 1 635 411820390 411821036 1.880000e-78 303.0
21 TraesCS5B01G182700 chr4A 79.931 578 84 23 2 550 211475975 211475401 3.010000e-106 396.0
22 TraesCS5B01G182700 chr7B 82.383 193 24 6 371 559 134211702 134211888 4.300000e-35 159.0
23 TraesCS5B01G182700 chr7B 100.000 33 0 0 1483 1515 434839265 434839297 1.250000e-05 62.1
24 TraesCS5B01G182700 chr3B 83.206 131 22 0 2378 2508 769537013 769536883 2.030000e-23 121.0
25 TraesCS5B01G182700 chr1D 83.206 131 22 0 2378 2508 420831666 420831796 2.030000e-23 121.0
26 TraesCS5B01G182700 chr7A 87.778 90 11 0 2419 2508 609448270 609448359 5.680000e-19 106.0
27 TraesCS5B01G182700 chr6A 86.667 90 12 0 2419 2508 97400391 97400480 2.640000e-17 100.0
28 TraesCS5B01G182700 chr6B 95.000 40 1 1 1483 1521 622737704 622737743 1.250000e-05 62.1
29 TraesCS5B01G182700 chr4B 100.000 33 0 0 1483 1515 71586839 71586871 1.250000e-05 62.1
30 TraesCS5B01G182700 chr3D 97.222 36 1 0 1483 1518 473457467 473457432 1.250000e-05 62.1
31 TraesCS5B01G182700 chr2B 100.000 33 0 0 1483 1515 216462818 216462850 1.250000e-05 62.1
32 TraesCS5B01G182700 chr1A 100.000 33 0 0 1483 1515 106228085 106228117 1.250000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G182700 chr5B 332435517 332439673 4156 True 7677.000000 7677 100.00000 1 4157 1 chr5B.!!$R2 4156
1 TraesCS5B01G182700 chr5A 384213336 384218079 4743 True 1175.000000 2771 88.59525 1 4157 4 chr5A.!!$R1 4156
2 TraesCS5B01G182700 chr5D 291884838 291888194 3356 True 1362.333333 2569 90.98400 725 4157 3 chr5D.!!$R3 3432
3 TraesCS5B01G182700 chr5D 291899469 291900219 750 True 662.000000 662 83.26700 1 728 1 chr5D.!!$R2 727
4 TraesCS5B01G182700 chr4D 113150686 113151320 634 False 520.000000 520 82.26100 1 605 1 chr4D.!!$F1 604
5 TraesCS5B01G182700 chr7D 629821905 629822542 637 False 508.000000 508 82.13200 1 597 1 chr7D.!!$F1 596
6 TraesCS5B01G182700 chr2D 627645595 627646243 648 True 508.000000 508 81.87400 1 609 1 chr2D.!!$R2 608
7 TraesCS5B01G182700 chr2D 272244432 272245012 580 True 431.000000 431 80.92000 1 558 1 chr2D.!!$R1 557
8 TraesCS5B01G182700 chr2A 595018921 595019651 730 False 459.000000 459 78.72300 1 725 1 chr2A.!!$F2 724
9 TraesCS5B01G182700 chr1B 411820390 411821036 646 False 303.000000 303 76.30400 1 635 1 chr1B.!!$F1 634
10 TraesCS5B01G182700 chr4A 211475401 211475975 574 True 396.000000 396 79.93100 2 550 1 chr4A.!!$R1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 0.106149 GTATCGAGCCCCGGAACAAT 59.894 55.0 0.73 0.00 39.14 2.71 F
1421 1689 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.0 5.23 0.00 44.66 1.40 F
2301 3138 0.106167 ATGAGAGGCCATGCAAGCAT 60.106 50.0 5.01 6.69 37.08 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1404 1672 0.032813 ACTAATTCCGGACGGAGGGA 60.033 55.000 13.64 0.0 46.06 4.20 R
2345 3182 0.179015 TTTGGGTCGTTTAGCTGGCA 60.179 50.000 0.00 0.0 0.00 4.92 R
3507 4365 1.355381 TGGCATCTGGTTCATCTGGTT 59.645 47.619 0.00 0.0 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 0.106149 GTATCGAGCCCCGGAACAAT 59.894 55.000 0.73 0.00 39.14 2.71
86 88 1.596477 GCCACCATCTCCTCATCGC 60.596 63.158 0.00 0.00 0.00 4.58
203 213 1.696832 GGGCGTCATCGAAGAAGCAC 61.697 60.000 25.42 20.55 43.44 4.40
288 300 2.435586 GTGCCAGATGAGCGTGCT 60.436 61.111 0.00 0.00 0.00 4.40
314 327 1.841556 TCGAAGGAGCTGGTTGGGT 60.842 57.895 0.00 0.00 0.00 4.51
494 567 0.537188 GCTGTCGATGGGAGGAAGAA 59.463 55.000 0.00 0.00 0.00 2.52
502 575 0.323360 TGGGAGGAAGAAAATGGCCG 60.323 55.000 0.00 0.00 0.00 6.13
508 581 1.818674 GGAAGAAAATGGCCGATGTGT 59.181 47.619 0.00 0.00 0.00 3.72
523 596 1.136984 GTGTCACCGACTAGCGAGG 59.863 63.158 7.94 3.08 44.57 4.63
540 613 1.225403 AGGCAGAGGGAGGAGTAGGT 61.225 60.000 0.00 0.00 0.00 3.08
577 672 3.127533 GCCGACGCAAATGAGGCT 61.128 61.111 0.00 0.00 44.06 4.58
578 673 2.690778 GCCGACGCAAATGAGGCTT 61.691 57.895 0.00 0.00 44.06 4.35
579 674 1.135315 CCGACGCAAATGAGGCTTG 59.865 57.895 0.00 0.00 0.00 4.01
585 680 4.671508 CGACGCAAATGAGGCTTGAATTTA 60.672 41.667 0.00 0.00 0.00 1.40
649 744 3.370061 GTCCGTTTAGGTCAGTGTATTGC 59.630 47.826 0.00 0.00 41.99 3.56
664 759 7.762159 TCAGTGTATTGCATCGACTTTTATGTA 59.238 33.333 0.00 0.00 0.00 2.29
674 769 7.045612 GCATCGACTTTTATGTATGTTTTGACG 60.046 37.037 0.00 0.00 0.00 4.35
677 772 6.246332 CGACTTTTATGTATGTTTTGACGCAG 59.754 38.462 0.00 0.00 0.00 5.18
690 785 2.278206 CGCAGACAGATACGCGCT 60.278 61.111 5.73 0.00 41.38 5.92
718 953 3.654414 GAAATAGATCGGCGAGTTGGAT 58.346 45.455 17.22 0.00 0.00 3.41
721 956 2.403252 AGATCGGCGAGTTGGATTTT 57.597 45.000 17.22 0.00 0.00 1.82
734 969 6.647067 CGAGTTGGATTTTCTCTTAACACTCT 59.353 38.462 0.00 0.00 0.00 3.24
745 980 4.079253 TCTTAACACTCTTTGGGATTGCC 58.921 43.478 0.00 0.00 0.00 4.52
757 992 2.292389 TGGGATTGCCATTGGATGAACT 60.292 45.455 6.95 0.00 35.15 3.01
850 1089 4.756642 TCTCAAATCACTCATCGCAAAAGT 59.243 37.500 0.00 0.00 0.00 2.66
857 1096 3.438087 CACTCATCGCAAAAGTGGAATCT 59.562 43.478 0.00 0.00 37.38 2.40
958 1225 2.158608 CCATTTTCCCCGAGGCTAGATT 60.159 50.000 0.00 0.00 0.00 2.40
959 1226 3.142174 CATTTTCCCCGAGGCTAGATTC 58.858 50.000 0.00 0.00 0.00 2.52
1095 1363 3.196469 TCATGCAGATCCCGGATAAGATC 59.804 47.826 0.73 6.68 39.38 2.75
1113 1381 6.688073 AAGATCCAAAACTCTCTCAAGGTA 57.312 37.500 0.00 0.00 0.00 3.08
1136 1404 3.569701 GGTTGCTTCTTGATCAGGTGAAA 59.430 43.478 4.57 0.00 0.00 2.69
1138 1406 5.451798 GGTTGCTTCTTGATCAGGTGAAAAA 60.452 40.000 4.57 2.95 0.00 1.94
1146 1414 8.021898 TCTTGATCAGGTGAAAAATTCCTTTT 57.978 30.769 4.57 0.00 40.03 2.27
1147 1415 9.142014 TCTTGATCAGGTGAAAAATTCCTTTTA 57.858 29.630 4.57 0.00 37.36 1.52
1203 1471 5.180117 CAGATGTAAACTGACCTGTTTGGAG 59.820 44.000 13.06 0.00 39.37 3.86
1211 1479 1.604278 GACCTGTTTGGAGCTTGTGAC 59.396 52.381 0.00 0.00 39.71 3.67
1239 1507 4.039124 ACATTTTGGGCGTTTCTTGAAGAT 59.961 37.500 0.00 0.00 0.00 2.40
1255 1523 1.204146 AGATGGATGGTGTTAGCGGT 58.796 50.000 0.00 0.00 0.00 5.68
1298 1566 3.372025 GCCATCAGAAAAGGTGAGGGTAT 60.372 47.826 5.75 0.00 45.72 2.73
1302 1570 6.183361 CCATCAGAAAAGGTGAGGGTATCATA 60.183 42.308 0.00 0.00 40.33 2.15
1326 1594 1.295746 CTGCTGCTGCTTCAGAGGA 59.704 57.895 17.00 0.00 40.48 3.71
1403 1671 4.162509 AGCCTCCAGAAATCAAGGTACTAC 59.837 45.833 0.00 0.00 38.49 2.73
1404 1672 4.162509 GCCTCCAGAAATCAAGGTACTACT 59.837 45.833 0.00 0.00 38.49 2.57
1405 1673 5.682730 GCCTCCAGAAATCAAGGTACTACTC 60.683 48.000 0.00 0.00 38.49 2.59
1406 1674 5.163395 CCTCCAGAAATCAAGGTACTACTCC 60.163 48.000 0.00 0.00 38.49 3.85
1407 1675 4.715297 TCCAGAAATCAAGGTACTACTCCC 59.285 45.833 0.00 0.00 38.49 4.30
1408 1676 4.717280 CCAGAAATCAAGGTACTACTCCCT 59.283 45.833 0.00 0.00 38.49 4.20
1409 1677 5.163395 CCAGAAATCAAGGTACTACTCCCTC 60.163 48.000 0.00 0.00 38.49 4.30
1410 1678 4.963628 AGAAATCAAGGTACTACTCCCTCC 59.036 45.833 0.00 0.00 38.49 4.30
1411 1679 2.431954 TCAAGGTACTACTCCCTCCG 57.568 55.000 0.00 0.00 38.49 4.63
1412 1680 1.637553 TCAAGGTACTACTCCCTCCGT 59.362 52.381 0.00 0.00 38.49 4.69
1413 1681 2.022934 CAAGGTACTACTCCCTCCGTC 58.977 57.143 0.00 0.00 38.49 4.79
1414 1682 0.550432 AGGTACTACTCCCTCCGTCC 59.450 60.000 0.00 0.00 36.02 4.79
1415 1683 0.817229 GGTACTACTCCCTCCGTCCG 60.817 65.000 0.00 0.00 0.00 4.79
1416 1684 0.817229 GTACTACTCCCTCCGTCCGG 60.817 65.000 0.00 0.00 0.00 5.14
1417 1685 0.982852 TACTACTCCCTCCGTCCGGA 60.983 60.000 0.00 0.00 42.90 5.14
1418 1686 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
1419 1687 0.467659 CTACTCCCTCCGTCCGGAAT 60.468 60.000 5.23 0.00 44.66 3.01
1420 1688 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.000 5.23 0.00 44.66 2.17
1421 1689 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.000 5.23 0.00 44.66 1.40
1422 1690 0.674534 CTCCCTCCGTCCGGAATTAG 59.325 60.000 5.23 3.15 44.66 1.73
1423 1691 0.032813 TCCCTCCGTCCGGAATTAGT 60.033 55.000 5.23 0.00 44.66 2.24
1424 1692 0.828677 CCCTCCGTCCGGAATTAGTT 59.171 55.000 5.23 0.00 44.66 2.24
1425 1693 1.208776 CCCTCCGTCCGGAATTAGTTT 59.791 52.381 5.23 0.00 44.66 2.66
1426 1694 2.431782 CCCTCCGTCCGGAATTAGTTTA 59.568 50.000 5.23 0.00 44.66 2.01
1427 1695 3.118665 CCCTCCGTCCGGAATTAGTTTAA 60.119 47.826 5.23 0.00 44.66 1.52
1428 1696 3.867493 CCTCCGTCCGGAATTAGTTTAAC 59.133 47.826 5.23 0.00 44.66 2.01
1429 1697 3.510719 TCCGTCCGGAATTAGTTTAACG 58.489 45.455 5.23 1.08 42.05 3.18
1430 1698 2.029606 CCGTCCGGAATTAGTTTAACGC 59.970 50.000 5.23 0.00 37.50 4.84
1431 1699 2.925563 CGTCCGGAATTAGTTTAACGCT 59.074 45.455 5.23 0.00 0.00 5.07
1432 1700 3.000376 CGTCCGGAATTAGTTTAACGCTC 60.000 47.826 5.23 0.00 0.00 5.03
1433 1701 3.928375 GTCCGGAATTAGTTTAACGCTCA 59.072 43.478 5.23 0.00 0.00 4.26
1434 1702 4.389687 GTCCGGAATTAGTTTAACGCTCAA 59.610 41.667 5.23 0.00 0.00 3.02
1435 1703 4.996122 TCCGGAATTAGTTTAACGCTCAAA 59.004 37.500 0.00 0.00 0.00 2.69
1436 1704 5.084055 CCGGAATTAGTTTAACGCTCAAAC 58.916 41.667 0.00 0.25 36.37 2.93
1437 1705 4.779523 CGGAATTAGTTTAACGCTCAAACG 59.220 41.667 0.00 0.00 40.14 3.60
1438 1706 5.084055 GGAATTAGTTTAACGCTCAAACGG 58.916 41.667 0.00 0.00 40.14 4.44
1439 1707 5.106987 GGAATTAGTTTAACGCTCAAACGGA 60.107 40.000 0.00 0.00 40.14 4.69
1440 1708 6.402875 GGAATTAGTTTAACGCTCAAACGGAT 60.403 38.462 0.00 0.00 40.14 4.18
1441 1709 3.806316 AGTTTAACGCTCAAACGGATG 57.194 42.857 0.00 0.00 40.14 3.51
1442 1710 3.135994 AGTTTAACGCTCAAACGGATGT 58.864 40.909 0.00 0.00 40.14 3.06
1443 1711 4.309099 AGTTTAACGCTCAAACGGATGTA 58.691 39.130 0.00 0.00 40.14 2.29
1444 1712 4.933400 AGTTTAACGCTCAAACGGATGTAT 59.067 37.500 0.00 0.00 40.14 2.29
1445 1713 5.063060 AGTTTAACGCTCAAACGGATGTATC 59.937 40.000 0.00 0.00 40.14 2.24
1446 1714 2.961526 ACGCTCAAACGGATGTATCT 57.038 45.000 0.00 0.00 37.37 1.98
1447 1715 4.380841 AACGCTCAAACGGATGTATCTA 57.619 40.909 0.00 0.00 37.37 1.98
1448 1716 3.703420 ACGCTCAAACGGATGTATCTAC 58.297 45.455 0.00 0.00 37.37 2.59
1449 1717 3.129813 ACGCTCAAACGGATGTATCTACA 59.870 43.478 0.00 0.00 37.77 2.74
1450 1718 4.109766 CGCTCAAACGGATGTATCTACAA 58.890 43.478 0.00 0.00 39.99 2.41
1451 1719 4.207224 CGCTCAAACGGATGTATCTACAAG 59.793 45.833 0.00 0.00 39.99 3.16
1452 1720 4.508124 GCTCAAACGGATGTATCTACAAGG 59.492 45.833 0.00 0.00 39.99 3.61
1453 1721 5.661458 CTCAAACGGATGTATCTACAAGGT 58.339 41.667 0.00 0.00 39.99 3.50
1454 1722 6.682113 GCTCAAACGGATGTATCTACAAGGTA 60.682 42.308 0.00 0.00 39.99 3.08
1455 1723 6.567050 TCAAACGGATGTATCTACAAGGTAC 58.433 40.000 0.00 0.00 39.99 3.34
1457 1725 7.557358 TCAAACGGATGTATCTACAAGGTACTA 59.443 37.037 0.00 0.00 38.49 1.82
1458 1726 6.874288 ACGGATGTATCTACAAGGTACTAC 57.126 41.667 0.00 0.00 38.49 2.73
1459 1727 6.599445 ACGGATGTATCTACAAGGTACTACT 58.401 40.000 0.00 0.00 38.49 2.57
1460 1728 6.709846 ACGGATGTATCTACAAGGTACTACTC 59.290 42.308 0.00 0.00 38.49 2.59
1461 1729 6.149142 CGGATGTATCTACAAGGTACTACTCC 59.851 46.154 0.00 2.86 38.49 3.85
1462 1730 6.433716 GGATGTATCTACAAGGTACTACTCCC 59.566 46.154 0.00 0.00 38.49 4.30
1463 1731 6.587560 TGTATCTACAAGGTACTACTCCCT 57.412 41.667 0.00 0.00 38.49 4.20
1464 1732 6.599445 TGTATCTACAAGGTACTACTCCCTC 58.401 44.000 0.00 0.00 38.49 4.30
1465 1733 4.516652 TCTACAAGGTACTACTCCCTCC 57.483 50.000 0.00 0.00 38.49 4.30
1466 1734 2.546652 ACAAGGTACTACTCCCTCCC 57.453 55.000 0.00 0.00 38.49 4.30
1467 1735 2.009165 ACAAGGTACTACTCCCTCCCT 58.991 52.381 0.00 0.00 38.49 4.20
1468 1736 2.024177 ACAAGGTACTACTCCCTCCCTC 60.024 54.545 0.00 0.00 38.49 4.30
1469 1737 1.233857 AGGTACTACTCCCTCCCTCC 58.766 60.000 0.00 0.00 36.02 4.30
1470 1738 0.178995 GGTACTACTCCCTCCCTCCG 60.179 65.000 0.00 0.00 0.00 4.63
1471 1739 0.178995 GTACTACTCCCTCCCTCCGG 60.179 65.000 0.00 0.00 0.00 5.14
1472 1740 0.327867 TACTACTCCCTCCCTCCGGA 60.328 60.000 2.93 2.93 36.45 5.14
1473 1741 1.219824 ACTACTCCCTCCCTCCGGAA 61.220 60.000 5.23 0.00 37.86 4.30
1474 1742 0.188834 CTACTCCCTCCCTCCGGAAT 59.811 60.000 5.23 0.00 37.86 3.01
1475 1743 0.640495 TACTCCCTCCCTCCGGAATT 59.360 55.000 5.23 0.00 37.86 2.17
1476 1744 0.640495 ACTCCCTCCCTCCGGAATTA 59.360 55.000 5.23 0.00 37.86 1.40
1477 1745 1.343069 CTCCCTCCCTCCGGAATTAG 58.657 60.000 5.23 2.39 37.86 1.73
1478 1746 0.640495 TCCCTCCCTCCGGAATTAGT 59.360 55.000 5.23 0.00 37.86 2.24
1479 1747 1.009183 TCCCTCCCTCCGGAATTAGTT 59.991 52.381 5.23 0.00 37.86 2.24
1480 1748 1.141053 CCCTCCCTCCGGAATTAGTTG 59.859 57.143 5.23 0.00 37.86 3.16
1481 1749 2.116238 CCTCCCTCCGGAATTAGTTGA 58.884 52.381 5.23 0.00 37.86 3.18
1482 1750 2.103263 CCTCCCTCCGGAATTAGTTGAG 59.897 54.545 5.23 3.78 37.86 3.02
1483 1751 2.766828 CTCCCTCCGGAATTAGTTGAGT 59.233 50.000 5.23 0.00 37.86 3.41
1484 1752 2.764572 TCCCTCCGGAATTAGTTGAGTC 59.235 50.000 5.23 0.00 34.19 3.36
1485 1753 2.158943 CCCTCCGGAATTAGTTGAGTCC 60.159 54.545 5.23 0.00 0.00 3.85
1493 1761 6.846325 GGAATTAGTTGAGTCCGGAATTAG 57.154 41.667 5.23 0.00 0.00 1.73
1494 1762 6.346896 GGAATTAGTTGAGTCCGGAATTAGT 58.653 40.000 5.23 2.93 0.00 2.24
1495 1763 6.822170 GGAATTAGTTGAGTCCGGAATTAGTT 59.178 38.462 5.23 0.00 0.00 2.24
1496 1764 7.201617 GGAATTAGTTGAGTCCGGAATTAGTTG 60.202 40.741 5.23 0.00 0.00 3.16
1497 1765 4.884668 AGTTGAGTCCGGAATTAGTTGA 57.115 40.909 5.23 0.00 0.00 3.18
1498 1766 4.566987 AGTTGAGTCCGGAATTAGTTGAC 58.433 43.478 5.23 0.00 0.00 3.18
1499 1767 3.226346 TGAGTCCGGAATTAGTTGACG 57.774 47.619 5.23 0.00 0.00 4.35
1500 1768 1.925185 GAGTCCGGAATTAGTTGACGC 59.075 52.381 5.23 0.00 0.00 5.19
1501 1769 1.549170 AGTCCGGAATTAGTTGACGCT 59.451 47.619 5.23 0.00 0.00 5.07
1502 1770 1.925185 GTCCGGAATTAGTTGACGCTC 59.075 52.381 5.23 0.00 0.00 5.03
1503 1771 1.546923 TCCGGAATTAGTTGACGCTCA 59.453 47.619 0.00 0.00 0.00 4.26
1504 1772 2.028839 TCCGGAATTAGTTGACGCTCAA 60.029 45.455 0.00 0.00 33.32 3.02
1505 1773 2.739913 CCGGAATTAGTTGACGCTCAAA 59.260 45.455 0.00 0.00 38.22 2.69
1506 1774 3.424433 CCGGAATTAGTTGACGCTCAAAC 60.424 47.826 0.00 0.00 38.22 2.93
1507 1775 3.720920 CGGAATTAGTTGACGCTCAAACG 60.721 47.826 2.65 0.00 38.22 3.60
1508 1776 3.424433 GGAATTAGTTGACGCTCAAACGG 60.424 47.826 2.65 0.00 38.22 4.44
1509 1777 2.512485 TTAGTTGACGCTCAAACGGA 57.488 45.000 2.65 0.00 38.22 4.69
1510 1778 2.736144 TAGTTGACGCTCAAACGGAT 57.264 45.000 2.65 0.00 38.22 4.18
1511 1779 1.148310 AGTTGACGCTCAAACGGATG 58.852 50.000 2.65 0.00 38.22 3.51
1512 1780 0.865769 GTTGACGCTCAAACGGATGT 59.134 50.000 2.65 0.00 38.22 3.06
1513 1781 2.063266 GTTGACGCTCAAACGGATGTA 58.937 47.619 2.65 0.00 38.22 2.29
1514 1782 2.665649 TGACGCTCAAACGGATGTAT 57.334 45.000 0.00 0.00 37.37 2.29
1515 1783 2.967362 TGACGCTCAAACGGATGTATT 58.033 42.857 0.00 0.00 37.37 1.89
1516 1784 3.331150 TGACGCTCAAACGGATGTATTT 58.669 40.909 0.00 0.00 37.37 1.40
1517 1785 4.496360 TGACGCTCAAACGGATGTATTTA 58.504 39.130 0.00 0.00 37.37 1.40
1518 1786 4.930405 TGACGCTCAAACGGATGTATTTAA 59.070 37.500 0.00 0.00 37.37 1.52
1519 1787 5.062934 TGACGCTCAAACGGATGTATTTAAG 59.937 40.000 0.00 0.00 37.37 1.85
1520 1788 4.201783 ACGCTCAAACGGATGTATTTAAGC 60.202 41.667 0.00 0.00 37.37 3.09
1521 1789 4.034048 CGCTCAAACGGATGTATTTAAGCT 59.966 41.667 0.00 0.00 0.00 3.74
1522 1790 5.502606 GCTCAAACGGATGTATTTAAGCTC 58.497 41.667 0.00 0.00 0.00 4.09
1523 1791 5.504173 GCTCAAACGGATGTATTTAAGCTCC 60.504 44.000 0.00 0.00 0.00 4.70
1526 1794 3.380479 CGGATGTATTTAAGCTCCGGA 57.620 47.619 2.93 2.93 43.89 5.14
1527 1795 3.057734 CGGATGTATTTAAGCTCCGGAC 58.942 50.000 0.00 0.00 43.89 4.79
1528 1796 3.057734 GGATGTATTTAAGCTCCGGACG 58.942 50.000 0.00 0.00 0.00 4.79
1529 1797 2.589798 TGTATTTAAGCTCCGGACGG 57.410 50.000 0.00 3.96 0.00 4.79
1530 1798 2.101783 TGTATTTAAGCTCCGGACGGA 58.898 47.619 13.40 13.40 42.90 4.69
1553 1821 6.295719 AGGGAGTATTTGATAACGAGTTGT 57.704 37.500 0.00 0.00 0.00 3.32
1595 1863 5.063880 GGGGATGCTTGTATTGTAGGTTAG 58.936 45.833 0.00 0.00 0.00 2.34
1606 1874 6.842280 TGTATTGTAGGTTAGAAGATGGCCTA 59.158 38.462 3.32 0.00 0.00 3.93
1614 1883 8.697507 AGGTTAGAAGATGGCCTAATATTTTG 57.302 34.615 3.32 0.00 0.00 2.44
1638 1907 8.017418 TGGAAAATTAAACTGGACACAAGATT 57.983 30.769 0.00 0.00 0.00 2.40
1655 1924 9.415544 ACACAAGATTGAAATATTTCTTCTTGC 57.584 29.630 36.80 21.79 46.90 4.01
1659 1928 7.779073 AGATTGAAATATTTCTTCTTGCTGGG 58.221 34.615 24.77 0.00 38.02 4.45
1673 1942 1.552337 TGCTGGGACATCTCTGAGTTC 59.448 52.381 4.32 0.43 38.20 3.01
1674 1943 1.134551 GCTGGGACATCTCTGAGTTCC 60.135 57.143 4.32 8.95 38.20 3.62
1675 1944 1.135915 CTGGGACATCTCTGAGTTCCG 59.864 57.143 4.32 0.00 38.20 4.30
1683 1952 2.036387 TCTCTGAGTTCCGTGTTCCAA 58.964 47.619 4.32 0.00 0.00 3.53
1692 1961 3.992943 TCCGTGTTCCAATAGGTCATT 57.007 42.857 0.00 0.00 35.89 2.57
1695 1964 5.607477 TCCGTGTTCCAATAGGTCATTATC 58.393 41.667 0.00 0.00 35.89 1.75
1701 1970 9.125026 GTGTTCCAATAGGTCATTATCATTTCT 57.875 33.333 0.00 0.00 35.89 2.52
1816 2085 1.891150 CCACAAGGCTCTCTTTGCAAT 59.109 47.619 0.00 0.00 32.41 3.56
1819 2088 3.255149 CACAAGGCTCTCTTTGCAATCTT 59.745 43.478 0.00 0.00 32.41 2.40
1827 2096 7.831193 AGGCTCTCTTTGCAATCTTAATCTAAA 59.169 33.333 0.00 0.00 0.00 1.85
1915 2184 4.089923 GTGTTCAAAAATATCAAGGTGCGC 59.910 41.667 0.00 0.00 0.00 6.09
1920 2189 2.401583 AATATCAAGGTGCGCACAGA 57.598 45.000 38.60 31.02 0.00 3.41
1923 2192 2.627515 ATCAAGGTGCGCACAGATAT 57.372 45.000 38.60 23.72 0.00 1.63
1924 2193 3.751479 ATCAAGGTGCGCACAGATATA 57.249 42.857 38.60 20.19 0.00 0.86
1925 2194 2.821546 TCAAGGTGCGCACAGATATAC 58.178 47.619 38.60 21.09 0.00 1.47
1926 2195 2.430694 TCAAGGTGCGCACAGATATACT 59.569 45.455 38.60 22.95 0.00 2.12
1931 2200 3.982058 GGTGCGCACAGATATACTCTTAC 59.018 47.826 38.60 14.71 29.16 2.34
1932 2201 4.261656 GGTGCGCACAGATATACTCTTACT 60.262 45.833 38.60 0.00 29.16 2.24
1933 2202 5.282510 GTGCGCACAGATATACTCTTACTT 58.717 41.667 34.52 0.00 29.16 2.24
1934 2203 6.436261 GTGCGCACAGATATACTCTTACTTA 58.564 40.000 34.52 0.00 29.16 2.24
1935 2204 7.085116 GTGCGCACAGATATACTCTTACTTAT 58.915 38.462 34.52 0.00 29.16 1.73
1936 2205 7.595502 GTGCGCACAGATATACTCTTACTTATT 59.404 37.037 34.52 0.00 29.16 1.40
1938 2207 7.808381 GCGCACAGATATACTCTTACTTATTCA 59.192 37.037 0.30 0.00 29.16 2.57
1939 2208 9.335891 CGCACAGATATACTCTTACTTATTCAG 57.664 37.037 0.00 0.00 29.16 3.02
1971 2241 0.521735 GGAACGGCCTTGTGATTGTC 59.478 55.000 0.00 0.00 0.00 3.18
1972 2242 0.521735 GAACGGCCTTGTGATTGTCC 59.478 55.000 0.00 0.00 0.00 4.02
1992 2262 2.100605 AGGGAACTGTTCGATGCTTC 57.899 50.000 13.89 0.00 41.13 3.86
1993 2263 1.347707 AGGGAACTGTTCGATGCTTCA 59.652 47.619 13.89 0.00 41.13 3.02
1995 2265 2.352960 GGGAACTGTTCGATGCTTCATC 59.647 50.000 13.89 0.00 37.50 2.92
1997 2267 2.029838 ACTGTTCGATGCTTCATCCC 57.970 50.000 0.08 0.00 37.57 3.85
1998 2268 1.556911 ACTGTTCGATGCTTCATCCCT 59.443 47.619 0.08 0.00 37.57 4.20
1999 2269 1.938577 CTGTTCGATGCTTCATCCCTG 59.061 52.381 0.08 0.00 37.57 4.45
2000 2270 1.278985 TGTTCGATGCTTCATCCCTGT 59.721 47.619 0.08 0.00 37.57 4.00
2001 2271 2.290260 TGTTCGATGCTTCATCCCTGTT 60.290 45.455 0.08 0.00 37.57 3.16
2002 2272 2.315925 TCGATGCTTCATCCCTGTTC 57.684 50.000 0.08 0.00 37.57 3.18
2004 2274 2.237143 TCGATGCTTCATCCCTGTTCTT 59.763 45.455 0.08 0.00 37.57 2.52
2005 2275 3.450817 TCGATGCTTCATCCCTGTTCTTA 59.549 43.478 0.08 0.00 37.57 2.10
2006 2276 4.081142 TCGATGCTTCATCCCTGTTCTTAA 60.081 41.667 0.08 0.00 37.57 1.85
2007 2277 4.818546 CGATGCTTCATCCCTGTTCTTAAT 59.181 41.667 0.08 0.00 37.57 1.40
2017 2342 5.479306 TCCCTGTTCTTAATTTCTCAGTCG 58.521 41.667 0.00 0.00 0.00 4.18
2021 2346 5.985781 TGTTCTTAATTTCTCAGTCGTTGC 58.014 37.500 0.00 0.00 0.00 4.17
2025 2350 5.758296 TCTTAATTTCTCAGTCGTTGCTGTT 59.242 36.000 0.00 0.00 37.70 3.16
2026 2351 4.900635 AATTTCTCAGTCGTTGCTGTTT 57.099 36.364 0.00 0.00 37.70 2.83
2027 2352 3.673746 TTTCTCAGTCGTTGCTGTTTG 57.326 42.857 0.00 0.00 37.70 2.93
2040 2367 3.899734 TGCTGTTTGTATGTCATTGTGC 58.100 40.909 0.00 0.00 0.00 4.57
2042 2369 4.022155 TGCTGTTTGTATGTCATTGTGCAT 60.022 37.500 0.00 0.00 0.00 3.96
2044 2371 6.127675 TGCTGTTTGTATGTCATTGTGCATAT 60.128 34.615 0.00 0.00 31.33 1.78
2048 2375 7.969508 TGTTTGTATGTCATTGTGCATATCAAG 59.030 33.333 0.00 0.00 31.33 3.02
2067 2394 6.915544 TCAAGATAGTTCTGTGATGCAATC 57.084 37.500 0.00 0.00 36.61 2.67
2071 2398 1.637553 AGTTCTGTGATGCAATCCCCT 59.362 47.619 0.00 0.00 44.73 4.79
2073 2400 1.288188 TCTGTGATGCAATCCCCTGA 58.712 50.000 0.00 0.00 44.73 3.86
2077 2404 3.443052 TGTGATGCAATCCCCTGAAAAT 58.557 40.909 0.00 0.00 44.73 1.82
2079 2406 4.186159 GTGATGCAATCCCCTGAAAATTG 58.814 43.478 0.00 0.00 44.73 2.32
2080 2407 4.081531 GTGATGCAATCCCCTGAAAATTGA 60.082 41.667 0.00 0.00 44.73 2.57
2081 2408 4.531339 TGATGCAATCCCCTGAAAATTGAA 59.469 37.500 0.00 0.00 44.73 2.69
2082 2409 4.270245 TGCAATCCCCTGAAAATTGAAC 57.730 40.909 0.00 0.00 33.22 3.18
2083 2410 3.645212 TGCAATCCCCTGAAAATTGAACA 59.355 39.130 0.00 0.00 33.22 3.18
2084 2411 4.286549 TGCAATCCCCTGAAAATTGAACAT 59.713 37.500 0.00 0.00 33.22 2.71
2085 2412 4.632688 GCAATCCCCTGAAAATTGAACATG 59.367 41.667 0.00 0.00 33.22 3.21
2086 2413 5.797051 CAATCCCCTGAAAATTGAACATGT 58.203 37.500 0.00 0.00 33.22 3.21
2087 2414 6.232692 CAATCCCCTGAAAATTGAACATGTT 58.767 36.000 11.78 11.78 33.22 2.71
2088 2415 5.467035 TCCCCTGAAAATTGAACATGTTC 57.533 39.130 28.10 28.10 39.91 3.18
2104 2451 9.791820 TGAACATGTTCATTCATCATACATTTC 57.208 29.630 32.36 5.92 43.90 2.17
2112 2459 9.685276 TTCATTCATCATACATTTCTTAGGTGT 57.315 29.630 0.00 0.00 0.00 4.16
2131 2478 9.933723 TTAGGTGTCCATTAACTAACTTAAGAC 57.066 33.333 10.09 0.00 0.00 3.01
2134 2481 8.665685 GGTGTCCATTAACTAACTTAAGACATG 58.334 37.037 10.09 0.00 34.49 3.21
2135 2482 8.665685 GTGTCCATTAACTAACTTAAGACATGG 58.334 37.037 10.09 9.09 34.49 3.66
2150 2497 0.894835 CATGGTTAAGTGGTTGGCCC 59.105 55.000 0.00 0.00 0.00 5.80
2151 2498 0.485099 ATGGTTAAGTGGTTGGCCCA 59.515 50.000 0.00 0.00 42.51 5.36
2152 2499 0.178975 TGGTTAAGTGGTTGGCCCAG 60.179 55.000 0.00 0.00 46.45 4.45
2155 2502 1.611977 GTTAAGTGGTTGGCCCAGAAC 59.388 52.381 0.00 0.00 46.45 3.01
2156 2503 0.111639 TAAGTGGTTGGCCCAGAACC 59.888 55.000 15.08 15.08 46.45 3.62
2158 2505 1.903404 GTGGTTGGCCCAGAACCTG 60.903 63.158 20.81 0.00 46.45 4.00
2159 2506 2.391130 TGGTTGGCCCAGAACCTGT 61.391 57.895 20.81 0.00 43.00 4.00
2160 2507 1.063070 TGGTTGGCCCAGAACCTGTA 61.063 55.000 20.81 2.18 43.00 2.74
2162 2509 1.272480 GGTTGGCCCAGAACCTGTAAT 60.272 52.381 14.75 0.00 39.94 1.89
2163 2510 2.525368 GTTGGCCCAGAACCTGTAATT 58.475 47.619 0.00 0.00 0.00 1.40
2164 2511 2.214376 TGGCCCAGAACCTGTAATTG 57.786 50.000 0.00 0.00 0.00 2.32
2165 2512 1.427368 TGGCCCAGAACCTGTAATTGT 59.573 47.619 0.00 0.00 0.00 2.71
2166 2513 2.645297 TGGCCCAGAACCTGTAATTGTA 59.355 45.455 0.00 0.00 0.00 2.41
2167 2514 3.014623 GGCCCAGAACCTGTAATTGTAC 58.985 50.000 0.00 0.00 0.00 2.90
2168 2515 3.014623 GCCCAGAACCTGTAATTGTACC 58.985 50.000 0.00 0.00 0.00 3.34
2169 2516 3.560453 GCCCAGAACCTGTAATTGTACCA 60.560 47.826 0.00 0.00 0.00 3.25
2170 2517 4.007659 CCCAGAACCTGTAATTGTACCAC 58.992 47.826 0.00 0.00 0.00 4.16
2171 2518 4.007659 CCAGAACCTGTAATTGTACCACC 58.992 47.826 0.00 0.00 0.00 4.61
2172 2519 4.007659 CAGAACCTGTAATTGTACCACCC 58.992 47.826 0.00 0.00 0.00 4.61
2173 2520 3.653836 AGAACCTGTAATTGTACCACCCA 59.346 43.478 0.00 0.00 0.00 4.51
2174 2521 4.105057 AGAACCTGTAATTGTACCACCCAA 59.895 41.667 0.00 0.00 0.00 4.12
2175 2522 4.028993 ACCTGTAATTGTACCACCCAAG 57.971 45.455 0.00 0.00 0.00 3.61
2176 2523 3.396611 ACCTGTAATTGTACCACCCAAGT 59.603 43.478 0.00 0.00 0.00 3.16
2180 2552 5.202004 TGTAATTGTACCACCCAAGTTGTT 58.798 37.500 1.45 0.00 0.00 2.83
2189 2561 3.243501 CCACCCAAGTTGTTGAATGACAG 60.244 47.826 1.45 0.00 35.46 3.51
2192 2564 4.709397 ACCCAAGTTGTTGAATGACAGAAA 59.291 37.500 1.45 0.00 35.46 2.52
2197 2569 6.949352 AGTTGTTGAATGACAGAAACTGAT 57.051 33.333 5.76 0.00 35.86 2.90
2201 2573 7.984422 TGTTGAATGACAGAAACTGATATGT 57.016 32.000 5.76 0.00 35.18 2.29
2205 2577 8.205131 TGAATGACAGAAACTGATATGTGATG 57.795 34.615 5.76 0.00 35.18 3.07
2210 2582 8.849168 TGACAGAAACTGATATGTGATGTTTTT 58.151 29.630 5.76 0.00 35.18 1.94
2248 3085 3.985925 CCTTTACAGTGTGTTCGGAGTAC 59.014 47.826 5.88 0.00 0.00 2.73
2249 3086 4.261909 CCTTTACAGTGTGTTCGGAGTACT 60.262 45.833 5.88 0.00 0.00 2.73
2258 3095 5.038683 TGTGTTCGGAGTACTTATATTGCG 58.961 41.667 0.00 0.00 33.90 4.85
2262 3099 5.306532 TCGGAGTACTTATATTGCGATCC 57.693 43.478 0.00 0.00 36.26 3.36
2267 3104 7.152645 GGAGTACTTATATTGCGATCCTTGAA 58.847 38.462 0.00 0.00 0.00 2.69
2269 3106 8.366671 AGTACTTATATTGCGATCCTTGAAAC 57.633 34.615 0.00 0.00 0.00 2.78
2270 3107 8.204836 AGTACTTATATTGCGATCCTTGAAACT 58.795 33.333 0.00 0.00 0.00 2.66
2271 3108 9.472361 GTACTTATATTGCGATCCTTGAAACTA 57.528 33.333 0.00 0.00 0.00 2.24
2273 3110 8.993121 ACTTATATTGCGATCCTTGAAACTATG 58.007 33.333 0.00 0.00 0.00 2.23
2274 3111 9.208022 CTTATATTGCGATCCTTGAAACTATGA 57.792 33.333 0.00 0.00 0.00 2.15
2275 3112 9.554395 TTATATTGCGATCCTTGAAACTATGAA 57.446 29.630 0.00 0.00 0.00 2.57
2276 3113 6.757897 ATTGCGATCCTTGAAACTATGAAA 57.242 33.333 0.00 0.00 0.00 2.69
2277 3114 5.801350 TGCGATCCTTGAAACTATGAAAG 57.199 39.130 0.00 0.00 0.00 2.62
2281 3118 7.121168 TGCGATCCTTGAAACTATGAAAGAAAT 59.879 33.333 0.00 0.00 0.00 2.17
2290 3127 9.113838 TGAAACTATGAAAGAAATATGAGAGGC 57.886 33.333 0.00 0.00 0.00 4.70
2297 3134 4.174704 AGAAATATGAGAGGCCATGCAA 57.825 40.909 5.01 0.00 0.00 4.08
2298 3135 4.142790 AGAAATATGAGAGGCCATGCAAG 58.857 43.478 5.01 0.00 0.00 4.01
2299 3136 1.906990 ATATGAGAGGCCATGCAAGC 58.093 50.000 5.01 3.55 0.00 4.01
2300 3137 0.547553 TATGAGAGGCCATGCAAGCA 59.452 50.000 5.01 0.00 0.00 3.91
2301 3138 0.106167 ATGAGAGGCCATGCAAGCAT 60.106 50.000 5.01 6.69 37.08 3.79
2302 3139 0.547553 TGAGAGGCCATGCAAGCATA 59.452 50.000 5.01 0.00 34.91 3.14
2303 3140 1.144298 TGAGAGGCCATGCAAGCATAT 59.856 47.619 5.01 4.10 34.91 1.78
2304 3141 2.372837 TGAGAGGCCATGCAAGCATATA 59.627 45.455 5.01 0.00 34.91 0.86
2305 3142 3.009805 TGAGAGGCCATGCAAGCATATAT 59.990 43.478 5.01 0.00 34.91 0.86
2306 3143 3.353557 AGAGGCCATGCAAGCATATATG 58.646 45.455 5.01 8.45 34.91 1.78
2307 3144 3.087031 GAGGCCATGCAAGCATATATGT 58.913 45.455 14.14 0.00 34.91 2.29
2308 3145 3.503365 AGGCCATGCAAGCATATATGTT 58.497 40.909 14.14 5.37 34.91 2.71
2309 3146 3.257375 AGGCCATGCAAGCATATATGTTG 59.743 43.478 14.14 15.87 34.91 3.33
2310 3147 3.006110 GGCCATGCAAGCATATATGTTGT 59.994 43.478 14.14 0.00 34.91 3.32
2316 3153 7.115805 CCATGCAAGCATATATGTTGTTGATTC 59.884 37.037 20.07 9.39 34.91 2.52
2333 3170 7.909518 TGTTGATTCTTCATGATTTCCCAAAT 58.090 30.769 0.00 0.00 0.00 2.32
2334 3171 8.377034 TGTTGATTCTTCATGATTTCCCAAATT 58.623 29.630 0.00 0.00 0.00 1.82
2335 3172 9.223099 GTTGATTCTTCATGATTTCCCAAATTT 57.777 29.630 0.00 0.00 0.00 1.82
2336 3173 8.780846 TGATTCTTCATGATTTCCCAAATTTG 57.219 30.769 11.40 11.40 0.00 2.32
2347 3184 2.000429 CCAAATTTGGCTACTGCTGC 58.000 50.000 23.81 0.00 42.21 5.25
2357 3194 1.002366 CTACTGCTGCCAGCTAAACG 58.998 55.000 18.96 3.85 42.97 3.60
2364 3201 0.179015 TGCCAGCTAAACGACCCAAA 60.179 50.000 0.00 0.00 0.00 3.28
2374 3214 5.467735 GCTAAACGACCCAAAGAACTTCTAA 59.532 40.000 0.00 0.00 0.00 2.10
2407 3247 4.390603 TGTGTTATCTTAACCATGCACGAC 59.609 41.667 0.00 0.00 0.00 4.34
2414 3258 2.849880 AACCATGCACGACATATTGC 57.150 45.000 0.00 0.00 36.64 3.56
2465 3309 2.743664 CGTGTTGCTTGATGAAGGATCA 59.256 45.455 0.00 0.00 39.47 2.92
2519 3363 2.604139 TGGAAATTCCTTTGGTGGTCC 58.396 47.619 13.78 0.00 37.46 4.46
2528 3372 0.693622 TTTGGTGGTCCGGCATCTTA 59.306 50.000 0.00 0.00 36.30 2.10
3118 3964 5.998363 AGTTCCCTTAGATTGACAAGACAAC 59.002 40.000 0.00 0.00 32.50 3.32
3137 3983 4.137543 CAACAGGGGCAGGATAAACTATC 58.862 47.826 0.00 0.00 34.42 2.08
3398 4249 1.005097 TGCTTGATCTTCATGCCTGGT 59.995 47.619 11.43 0.00 44.13 4.00
3410 4261 1.678635 GCCTGGTGTGCTTGGCATA 60.679 57.895 0.00 0.00 44.34 3.14
3422 4273 4.511826 GTGCTTGGCATACCTACTACATTC 59.488 45.833 0.00 0.00 41.91 2.67
3484 4342 3.192466 TGATGTGAGCTCATGTGAATCG 58.808 45.455 21.47 0.00 0.00 3.34
3584 4442 7.122353 AGTTCATCCATCTTTTCTCCAAATCTG 59.878 37.037 0.00 0.00 0.00 2.90
3617 4476 3.084786 AGCCTCCAATTCCTTTCTTTCG 58.915 45.455 0.00 0.00 0.00 3.46
3694 4553 3.257393 GCATTCTATAGCCCACTGATCG 58.743 50.000 0.00 0.00 0.00 3.69
3696 4555 4.382470 GCATTCTATAGCCCACTGATCGAT 60.382 45.833 0.00 0.00 0.00 3.59
3847 4706 4.504916 CGCTGCCTCGACCTCAGG 62.505 72.222 0.00 0.00 0.00 3.86
3856 4715 3.637273 GACCTCAGGCACCCGGTT 61.637 66.667 0.00 0.00 0.00 4.44
3911 4782 1.591863 GCGCCGTGGAGGAAGATAC 60.592 63.158 0.00 0.00 45.00 2.24
4104 4975 1.517694 GAACGACGGCGCCAAGATA 60.518 57.895 28.98 0.00 42.48 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 0.613853 ACCTTAGTAGGCAGCGACCA 60.614 55.000 0.69 0.00 46.22 4.02
106 108 7.750769 TCTTTTTCCACAATTTTCTTTGCAAG 58.249 30.769 0.00 0.00 0.00 4.01
279 291 4.908687 ACAACGCCAGCACGCTCA 62.909 61.111 0.00 0.00 36.19 4.26
288 300 2.357034 GCTCCTTCGACAACGCCA 60.357 61.111 0.00 0.00 39.58 5.69
406 464 1.003580 CAGTCTGCACCCACATACCTT 59.996 52.381 0.00 0.00 0.00 3.50
466 537 2.045926 ATCGACAGCAAGCCCCAC 60.046 61.111 0.00 0.00 0.00 4.61
467 538 2.046023 CATCGACAGCAAGCCCCA 60.046 61.111 0.00 0.00 0.00 4.96
494 567 1.305219 CGGTGACACATCGGCCATTT 61.305 55.000 8.08 0.00 34.00 2.32
502 575 0.450583 TCGCTAGTCGGTGACACATC 59.549 55.000 8.08 0.00 39.05 3.06
508 581 2.360726 TGCCTCGCTAGTCGGTGA 60.361 61.111 6.71 0.00 39.05 4.02
523 596 1.045911 CCACCTACTCCTCCCTCTGC 61.046 65.000 0.00 0.00 0.00 4.26
558 631 3.118454 CCTCATTTGCGTCGGCGT 61.118 61.111 12.58 0.00 44.10 5.68
577 672 5.067674 CGATTCATTCCTGGCCTAAATTCAA 59.932 40.000 3.32 0.00 0.00 2.69
578 673 4.580167 CGATTCATTCCTGGCCTAAATTCA 59.420 41.667 3.32 0.00 0.00 2.57
579 674 4.557496 GCGATTCATTCCTGGCCTAAATTC 60.557 45.833 3.32 0.00 0.00 2.17
585 680 0.179034 GAGCGATTCATTCCTGGCCT 60.179 55.000 3.32 0.00 0.00 5.19
620 715 0.387750 GACCTAAACGGACGAGCGTT 60.388 55.000 0.00 0.00 36.31 4.84
625 720 1.321474 ACACTGACCTAAACGGACGA 58.679 50.000 0.00 0.00 36.31 4.20
649 744 7.045612 GCGTCAAAACATACATAAAAGTCGATG 60.046 37.037 0.00 0.00 0.00 3.84
664 759 3.367932 CGTATCTGTCTGCGTCAAAACAT 59.632 43.478 0.00 0.00 0.00 2.71
674 769 2.864931 GCAGCGCGTATCTGTCTGC 61.865 63.158 15.02 15.02 42.46 4.26
688 783 0.778815 CGATCTATTTCGTCCGCAGC 59.221 55.000 0.00 0.00 34.46 5.25
689 784 1.409412 CCGATCTATTTCGTCCGCAG 58.591 55.000 0.00 0.00 37.42 5.18
690 785 0.596600 GCCGATCTATTTCGTCCGCA 60.597 55.000 0.00 0.00 37.42 5.69
702 797 2.093447 AGAAAATCCAACTCGCCGATCT 60.093 45.455 0.00 0.00 0.00 2.75
718 953 7.470009 GCAATCCCAAAGAGTGTTAAGAGAAAA 60.470 37.037 0.00 0.00 42.63 2.29
721 956 5.003804 GCAATCCCAAAGAGTGTTAAGAGA 58.996 41.667 0.00 0.00 42.63 3.10
745 980 3.760151 TCTTTGCCTGAGTTCATCCAATG 59.240 43.478 0.00 0.00 0.00 2.82
757 992 2.586425 CCAGTCCTTTTCTTTGCCTGA 58.414 47.619 0.00 0.00 0.00 3.86
850 1089 3.005472 CGCTCCGGTAATCTTAGATTCCA 59.995 47.826 11.06 0.00 0.00 3.53
857 1096 0.387929 CAGGCGCTCCGGTAATCTTA 59.612 55.000 7.64 0.00 37.47 2.10
918 1157 1.056660 GGAGAATGGGGATTCGGCTA 58.943 55.000 0.00 0.00 35.78 3.93
996 1263 5.684704 TCTTGATTACTGCTTCCCATTAGG 58.315 41.667 0.00 0.00 0.00 2.69
1065 1333 1.065564 GGGATCTGCATGAGGCTATCC 60.066 57.143 13.22 13.22 46.48 2.59
1095 1363 4.625607 ACCTACCTTGAGAGAGTTTTGG 57.374 45.455 0.00 0.00 0.00 3.28
1098 1366 3.648545 AGCAACCTACCTTGAGAGAGTTT 59.351 43.478 0.00 0.00 0.00 2.66
1113 1381 2.373169 TCACCTGATCAAGAAGCAACCT 59.627 45.455 0.00 0.00 0.00 3.50
1136 1404 7.390718 CCCCTCGATCGATAATAAAAGGAATTT 59.609 37.037 19.78 0.00 34.92 1.82
1138 1406 6.407202 CCCCTCGATCGATAATAAAAGGAAT 58.593 40.000 19.78 0.00 0.00 3.01
1146 1414 2.026915 TCGACCCCCTCGATCGATAATA 60.027 50.000 19.78 0.00 46.75 0.98
1147 1415 1.174783 CGACCCCCTCGATCGATAAT 58.825 55.000 19.78 2.68 46.14 1.28
1203 1471 3.568538 CCAAAATGTAGCTGTCACAAGC 58.431 45.455 0.00 0.00 43.88 4.01
1211 1479 2.228822 AGAAACGCCCAAAATGTAGCTG 59.771 45.455 0.00 0.00 0.00 4.24
1239 1507 1.298340 CCACCGCTAACACCATCCA 59.702 57.895 0.00 0.00 0.00 3.41
1255 1523 0.250945 TTTGTGCCTTGATACCGCCA 60.251 50.000 0.00 0.00 0.00 5.69
1285 1553 4.020485 GCGGTATATGATACCCTCACCTTT 60.020 45.833 9.55 0.00 36.48 3.11
1326 1594 2.190578 GCTGCCGGTCCAAGCTAT 59.809 61.111 1.90 0.00 0.00 2.97
1403 1671 0.674534 CTAATTCCGGACGGAGGGAG 59.325 60.000 13.64 8.24 46.06 4.30
1404 1672 0.032813 ACTAATTCCGGACGGAGGGA 60.033 55.000 13.64 0.00 46.06 4.20
1405 1673 0.828677 AACTAATTCCGGACGGAGGG 59.171 55.000 13.64 7.89 46.06 4.30
1406 1674 2.685850 AAACTAATTCCGGACGGAGG 57.314 50.000 13.64 8.21 46.06 4.30
1407 1675 3.549070 CGTTAAACTAATTCCGGACGGAG 59.451 47.826 13.64 3.57 46.06 4.63
1408 1676 3.510719 CGTTAAACTAATTCCGGACGGA 58.489 45.455 1.83 9.76 43.52 4.69
1409 1677 2.029606 GCGTTAAACTAATTCCGGACGG 59.970 50.000 1.83 3.96 0.00 4.79
1410 1678 2.925563 AGCGTTAAACTAATTCCGGACG 59.074 45.455 1.83 1.37 0.00 4.79
1411 1679 3.928375 TGAGCGTTAAACTAATTCCGGAC 59.072 43.478 1.83 0.00 0.00 4.79
1412 1680 4.191033 TGAGCGTTAAACTAATTCCGGA 57.809 40.909 0.00 0.00 0.00 5.14
1413 1681 4.932268 TTGAGCGTTAAACTAATTCCGG 57.068 40.909 0.00 0.00 0.00 5.14
1414 1682 4.779523 CGTTTGAGCGTTAAACTAATTCCG 59.220 41.667 10.32 0.00 36.22 4.30
1415 1683 5.084055 CCGTTTGAGCGTTAAACTAATTCC 58.916 41.667 10.32 0.00 36.22 3.01
1416 1684 5.919196 TCCGTTTGAGCGTTAAACTAATTC 58.081 37.500 10.32 0.00 36.22 2.17
1417 1685 5.927954 TCCGTTTGAGCGTTAAACTAATT 57.072 34.783 10.32 0.00 36.22 1.40
1418 1686 5.410439 ACATCCGTTTGAGCGTTAAACTAAT 59.590 36.000 10.32 3.43 36.22 1.73
1419 1687 4.751098 ACATCCGTTTGAGCGTTAAACTAA 59.249 37.500 10.32 1.75 36.22 2.24
1420 1688 4.309099 ACATCCGTTTGAGCGTTAAACTA 58.691 39.130 10.32 1.99 36.22 2.24
1421 1689 3.135994 ACATCCGTTTGAGCGTTAAACT 58.864 40.909 10.32 0.00 36.22 2.66
1422 1690 3.531262 ACATCCGTTTGAGCGTTAAAC 57.469 42.857 0.00 0.00 35.29 2.01
1423 1691 5.172934 AGATACATCCGTTTGAGCGTTAAA 58.827 37.500 0.00 0.00 0.00 1.52
1424 1692 4.751060 AGATACATCCGTTTGAGCGTTAA 58.249 39.130 0.00 0.00 0.00 2.01
1425 1693 4.380841 AGATACATCCGTTTGAGCGTTA 57.619 40.909 0.00 0.00 0.00 3.18
1426 1694 3.247006 AGATACATCCGTTTGAGCGTT 57.753 42.857 0.00 0.00 0.00 4.84
1427 1695 2.961526 AGATACATCCGTTTGAGCGT 57.038 45.000 0.00 0.00 0.00 5.07
1428 1696 3.702330 TGTAGATACATCCGTTTGAGCG 58.298 45.455 0.00 0.00 0.00 5.03
1429 1697 4.508124 CCTTGTAGATACATCCGTTTGAGC 59.492 45.833 0.00 0.00 35.89 4.26
1430 1698 5.661458 ACCTTGTAGATACATCCGTTTGAG 58.339 41.667 0.00 0.00 35.89 3.02
1431 1699 5.670792 ACCTTGTAGATACATCCGTTTGA 57.329 39.130 0.00 0.00 35.89 2.69
1432 1700 6.570692 AGTACCTTGTAGATACATCCGTTTG 58.429 40.000 0.00 0.00 35.89 2.93
1433 1701 6.786967 AGTACCTTGTAGATACATCCGTTT 57.213 37.500 0.00 0.00 35.89 3.60
1434 1702 7.059156 AGTAGTACCTTGTAGATACATCCGTT 58.941 38.462 0.00 0.00 35.89 4.44
1435 1703 6.599445 AGTAGTACCTTGTAGATACATCCGT 58.401 40.000 0.00 0.00 35.89 4.69
1436 1704 6.149142 GGAGTAGTACCTTGTAGATACATCCG 59.851 46.154 0.00 0.00 35.89 4.18
1437 1705 6.433716 GGGAGTAGTACCTTGTAGATACATCC 59.566 46.154 0.00 0.00 35.89 3.51
1438 1706 7.232910 AGGGAGTAGTACCTTGTAGATACATC 58.767 42.308 0.00 0.00 35.89 3.06
1439 1707 7.164233 AGGGAGTAGTACCTTGTAGATACAT 57.836 40.000 0.00 0.00 35.89 2.29
1440 1708 6.410157 GGAGGGAGTAGTACCTTGTAGATACA 60.410 46.154 1.79 0.00 37.18 2.29
1441 1709 6.003326 GGAGGGAGTAGTACCTTGTAGATAC 58.997 48.000 1.79 0.00 37.18 2.24
1442 1710 5.074239 GGGAGGGAGTAGTACCTTGTAGATA 59.926 48.000 1.79 0.00 37.18 1.98
1443 1711 4.140971 GGGAGGGAGTAGTACCTTGTAGAT 60.141 50.000 1.79 0.00 37.18 1.98
1444 1712 3.203934 GGGAGGGAGTAGTACCTTGTAGA 59.796 52.174 1.79 0.00 37.18 2.59
1445 1713 3.204831 AGGGAGGGAGTAGTACCTTGTAG 59.795 52.174 1.79 0.00 37.18 2.74
1446 1714 3.203934 GAGGGAGGGAGTAGTACCTTGTA 59.796 52.174 1.79 0.00 37.18 2.41
1447 1715 2.009165 AGGGAGGGAGTAGTACCTTGT 58.991 52.381 1.79 0.00 37.18 3.16
1448 1716 2.668625 GAGGGAGGGAGTAGTACCTTG 58.331 57.143 1.79 0.00 37.18 3.61
1449 1717 1.574821 GGAGGGAGGGAGTAGTACCTT 59.425 57.143 1.79 0.00 37.18 3.50
1450 1718 1.233857 GGAGGGAGGGAGTAGTACCT 58.766 60.000 0.00 0.00 40.54 3.08
1451 1719 0.178995 CGGAGGGAGGGAGTAGTACC 60.179 65.000 0.00 0.00 0.00 3.34
1452 1720 3.418022 CGGAGGGAGGGAGTAGTAC 57.582 63.158 0.00 0.00 0.00 2.73
1466 1734 2.810650 CGGACTCAACTAATTCCGGAG 58.189 52.381 3.34 0.00 45.95 4.63
1467 1735 2.953466 CGGACTCAACTAATTCCGGA 57.047 50.000 0.00 0.00 45.95 5.14
1470 1738 6.346896 ACTAATTCCGGACTCAACTAATTCC 58.653 40.000 1.83 0.00 0.00 3.01
1471 1739 7.548075 TCAACTAATTCCGGACTCAACTAATTC 59.452 37.037 1.83 0.00 0.00 2.17
1472 1740 7.333672 GTCAACTAATTCCGGACTCAACTAATT 59.666 37.037 1.83 0.60 0.00 1.40
1473 1741 6.817140 GTCAACTAATTCCGGACTCAACTAAT 59.183 38.462 1.83 0.00 0.00 1.73
1474 1742 6.161381 GTCAACTAATTCCGGACTCAACTAA 58.839 40.000 1.83 0.00 0.00 2.24
1475 1743 5.620654 CGTCAACTAATTCCGGACTCAACTA 60.621 44.000 1.83 0.00 0.00 2.24
1476 1744 4.566987 GTCAACTAATTCCGGACTCAACT 58.433 43.478 1.83 0.00 0.00 3.16
1477 1745 3.367025 CGTCAACTAATTCCGGACTCAAC 59.633 47.826 1.83 0.00 0.00 3.18
1478 1746 3.581755 CGTCAACTAATTCCGGACTCAA 58.418 45.455 1.83 0.00 0.00 3.02
1479 1747 2.673043 GCGTCAACTAATTCCGGACTCA 60.673 50.000 1.83 0.00 0.00 3.41
1480 1748 1.925185 GCGTCAACTAATTCCGGACTC 59.075 52.381 1.83 0.00 0.00 3.36
1481 1749 1.549170 AGCGTCAACTAATTCCGGACT 59.451 47.619 1.83 0.00 0.00 3.85
1482 1750 1.925185 GAGCGTCAACTAATTCCGGAC 59.075 52.381 1.83 0.00 0.00 4.79
1483 1751 1.546923 TGAGCGTCAACTAATTCCGGA 59.453 47.619 0.00 0.00 0.00 5.14
1484 1752 2.004583 TGAGCGTCAACTAATTCCGG 57.995 50.000 0.00 0.00 0.00 5.14
1485 1753 3.720920 CGTTTGAGCGTCAACTAATTCCG 60.721 47.826 0.76 0.00 35.89 4.30
1486 1754 3.424433 CCGTTTGAGCGTCAACTAATTCC 60.424 47.826 0.76 0.00 35.89 3.01
1487 1755 3.430895 TCCGTTTGAGCGTCAACTAATTC 59.569 43.478 0.76 0.00 35.89 2.17
1488 1756 3.395639 TCCGTTTGAGCGTCAACTAATT 58.604 40.909 0.76 0.00 35.89 1.40
1489 1757 3.034721 TCCGTTTGAGCGTCAACTAAT 57.965 42.857 0.76 0.00 35.89 1.73
1490 1758 2.512485 TCCGTTTGAGCGTCAACTAA 57.488 45.000 0.76 0.00 35.89 2.24
1491 1759 2.288579 ACATCCGTTTGAGCGTCAACTA 60.289 45.455 0.76 0.00 35.89 2.24
1492 1760 1.148310 CATCCGTTTGAGCGTCAACT 58.852 50.000 0.76 0.00 35.89 3.16
1493 1761 0.865769 ACATCCGTTTGAGCGTCAAC 59.134 50.000 0.76 0.00 35.89 3.18
1494 1762 2.442212 TACATCCGTTTGAGCGTCAA 57.558 45.000 0.00 0.00 34.03 3.18
1495 1763 2.665649 ATACATCCGTTTGAGCGTCA 57.334 45.000 0.00 0.00 0.00 4.35
1496 1764 5.459110 TTAAATACATCCGTTTGAGCGTC 57.541 39.130 0.00 0.00 0.00 5.19
1497 1765 4.201783 GCTTAAATACATCCGTTTGAGCGT 60.202 41.667 0.00 0.00 37.25 5.07
1498 1766 4.034048 AGCTTAAATACATCCGTTTGAGCG 59.966 41.667 8.34 0.00 45.81 5.03
1499 1767 5.485662 AGCTTAAATACATCCGTTTGAGC 57.514 39.130 6.52 6.52 43.30 4.26
1500 1768 5.276868 CGGAGCTTAAATACATCCGTTTGAG 60.277 44.000 3.85 0.00 46.02 3.02
1501 1769 4.569162 CGGAGCTTAAATACATCCGTTTGA 59.431 41.667 3.85 0.00 46.02 2.69
1502 1770 4.833126 CGGAGCTTAAATACATCCGTTTG 58.167 43.478 3.85 0.00 46.02 2.93
1507 1775 3.057734 CGTCCGGAGCTTAAATACATCC 58.942 50.000 3.06 0.00 0.00 3.51
1508 1776 3.057734 CCGTCCGGAGCTTAAATACATC 58.942 50.000 3.06 0.00 37.50 3.06
1509 1777 2.696707 TCCGTCCGGAGCTTAAATACAT 59.303 45.455 3.06 0.00 39.76 2.29
1510 1778 2.101783 TCCGTCCGGAGCTTAAATACA 58.898 47.619 3.06 0.00 39.76 2.29
1511 1779 2.877043 TCCGTCCGGAGCTTAAATAC 57.123 50.000 3.06 0.00 39.76 1.89
1521 1789 0.032813 AAATACTCCCTCCGTCCGGA 60.033 55.000 0.00 0.00 42.90 5.14
1522 1790 0.104304 CAAATACTCCCTCCGTCCGG 59.896 60.000 0.00 0.00 0.00 5.14
1523 1791 1.108776 TCAAATACTCCCTCCGTCCG 58.891 55.000 0.00 0.00 0.00 4.79
1524 1792 4.629092 GTTATCAAATACTCCCTCCGTCC 58.371 47.826 0.00 0.00 0.00 4.79
1525 1793 4.037208 TCGTTATCAAATACTCCCTCCGTC 59.963 45.833 0.00 0.00 0.00 4.79
1526 1794 3.956199 TCGTTATCAAATACTCCCTCCGT 59.044 43.478 0.00 0.00 0.00 4.69
1527 1795 4.037684 ACTCGTTATCAAATACTCCCTCCG 59.962 45.833 0.00 0.00 0.00 4.63
1528 1796 5.532664 ACTCGTTATCAAATACTCCCTCC 57.467 43.478 0.00 0.00 0.00 4.30
1529 1797 6.255887 CACAACTCGTTATCAAATACTCCCTC 59.744 42.308 0.00 0.00 0.00 4.30
1530 1798 6.070995 TCACAACTCGTTATCAAATACTCCCT 60.071 38.462 0.00 0.00 0.00 4.20
1531 1799 6.103997 TCACAACTCGTTATCAAATACTCCC 58.896 40.000 0.00 0.00 0.00 4.30
1532 1800 7.772332 ATCACAACTCGTTATCAAATACTCC 57.228 36.000 0.00 0.00 0.00 3.85
1533 1801 9.297586 TGTATCACAACTCGTTATCAAATACTC 57.702 33.333 0.00 0.00 0.00 2.59
1534 1802 9.647797 TTGTATCACAACTCGTTATCAAATACT 57.352 29.630 0.00 0.00 32.34 2.12
1553 1821 3.213506 CCCAATCGCAATCCTTGTATCA 58.786 45.455 0.00 0.00 0.00 2.15
1595 1863 9.836864 AATTTTCCAAAATATTAGGCCATCTTC 57.163 29.630 5.01 0.00 37.62 2.87
1614 1883 8.141268 TCAATCTTGTGTCCAGTTTAATTTTCC 58.859 33.333 0.00 0.00 0.00 3.13
1625 1894 9.565213 GAAGAAATATTTCAATCTTGTGTCCAG 57.435 33.333 26.02 0.00 39.61 3.86
1638 1907 6.009589 TGTCCCAGCAAGAAGAAATATTTCA 58.990 36.000 26.02 2.29 39.61 2.69
1644 1913 4.018597 AGAGATGTCCCAGCAAGAAGAAAT 60.019 41.667 0.00 0.00 0.00 2.17
1654 1923 1.134551 GGAACTCAGAGATGTCCCAGC 60.135 57.143 3.79 0.00 0.00 4.85
1655 1924 1.135915 CGGAACTCAGAGATGTCCCAG 59.864 57.143 3.79 0.00 0.00 4.45
1659 1928 3.246619 GAACACGGAACTCAGAGATGTC 58.753 50.000 3.79 0.00 0.00 3.06
1673 1942 5.364778 TGATAATGACCTATTGGAACACGG 58.635 41.667 0.00 0.00 39.29 4.94
1674 1943 7.496529 AATGATAATGACCTATTGGAACACG 57.503 36.000 0.00 0.00 39.29 4.49
1675 1944 9.125026 AGAAATGATAATGACCTATTGGAACAC 57.875 33.333 0.00 0.00 39.29 3.32
1843 2112 0.958382 TGTAAACTGCATCCGGTGGC 60.958 55.000 12.23 12.23 0.00 5.01
1924 2193 8.043710 CCTTGGACATTCTGAATAAGTAAGAGT 58.956 37.037 1.98 0.00 0.00 3.24
1925 2194 8.043710 ACCTTGGACATTCTGAATAAGTAAGAG 58.956 37.037 1.98 4.11 0.00 2.85
1926 2195 7.824289 CACCTTGGACATTCTGAATAAGTAAGA 59.176 37.037 1.98 0.00 0.00 2.10
1931 2200 5.500234 TCCACCTTGGACATTCTGAATAAG 58.500 41.667 1.98 3.45 42.67 1.73
1932 2201 5.512942 TCCACCTTGGACATTCTGAATAA 57.487 39.130 1.98 0.00 42.67 1.40
1944 2213 2.457323 AAGGCCGTTCCACCTTGGA 61.457 57.895 0.00 0.00 46.61 3.53
1945 2214 2.115266 AAGGCCGTTCCACCTTGG 59.885 61.111 0.00 0.00 44.65 3.61
1956 2226 1.308069 CCTGGACAATCACAAGGCCG 61.308 60.000 0.00 0.00 0.00 6.13
1959 2229 2.162681 GTTCCCTGGACAATCACAAGG 58.837 52.381 0.00 0.00 0.00 3.61
1971 2241 0.036010 AGCATCGAACAGTTCCCTGG 60.036 55.000 7.76 0.00 43.36 4.45
1972 2242 1.734465 GAAGCATCGAACAGTTCCCTG 59.266 52.381 7.76 6.56 44.68 4.45
1984 2254 2.322355 AGAACAGGGATGAAGCATCG 57.678 50.000 0.00 0.00 41.35 3.84
1991 2261 7.020827 ACTGAGAAATTAAGAACAGGGATGA 57.979 36.000 0.00 0.00 0.00 2.92
1992 2262 6.036517 CGACTGAGAAATTAAGAACAGGGATG 59.963 42.308 0.00 0.00 0.00 3.51
1993 2263 6.109359 CGACTGAGAAATTAAGAACAGGGAT 58.891 40.000 0.00 0.00 0.00 3.85
1995 2265 5.238583 ACGACTGAGAAATTAAGAACAGGG 58.761 41.667 0.00 0.00 0.00 4.45
1997 2267 6.073548 AGCAACGACTGAGAAATTAAGAACAG 60.074 38.462 0.00 0.00 0.00 3.16
1998 2268 5.758296 AGCAACGACTGAGAAATTAAGAACA 59.242 36.000 0.00 0.00 0.00 3.18
1999 2269 6.074005 CAGCAACGACTGAGAAATTAAGAAC 58.926 40.000 0.00 0.00 40.25 3.01
2000 2270 5.758296 ACAGCAACGACTGAGAAATTAAGAA 59.242 36.000 10.89 0.00 40.25 2.52
2001 2271 5.297547 ACAGCAACGACTGAGAAATTAAGA 58.702 37.500 10.89 0.00 40.25 2.10
2002 2272 5.597813 ACAGCAACGACTGAGAAATTAAG 57.402 39.130 10.89 0.00 40.25 1.85
2004 2274 5.295787 ACAAACAGCAACGACTGAGAAATTA 59.704 36.000 10.89 0.00 40.25 1.40
2005 2275 4.096382 ACAAACAGCAACGACTGAGAAATT 59.904 37.500 10.89 0.00 40.25 1.82
2006 2276 3.627577 ACAAACAGCAACGACTGAGAAAT 59.372 39.130 10.89 0.00 40.25 2.17
2007 2277 3.006940 ACAAACAGCAACGACTGAGAAA 58.993 40.909 10.89 0.00 40.25 2.52
2017 2342 4.148696 GCACAATGACATACAAACAGCAAC 59.851 41.667 0.00 0.00 0.00 4.17
2021 2346 7.474190 TGATATGCACAATGACATACAAACAG 58.526 34.615 0.00 0.00 31.87 3.16
2025 2350 7.862512 TCTTGATATGCACAATGACATACAA 57.137 32.000 0.00 8.30 31.87 2.41
2026 2351 9.211485 CTATCTTGATATGCACAATGACATACA 57.789 33.333 0.00 2.87 31.87 2.29
2027 2352 9.212641 ACTATCTTGATATGCACAATGACATAC 57.787 33.333 0.00 0.96 31.87 2.39
2040 2367 7.958053 TGCATCACAGAACTATCTTGATATG 57.042 36.000 0.00 0.00 34.52 1.78
2042 2369 7.658982 GGATTGCATCACAGAACTATCTTGATA 59.341 37.037 0.00 0.00 34.52 2.15
2044 2371 5.819379 GGATTGCATCACAGAACTATCTTGA 59.181 40.000 0.00 0.00 32.03 3.02
2048 2375 3.817647 GGGGATTGCATCACAGAACTATC 59.182 47.826 0.00 0.00 33.20 2.08
2067 2394 5.212532 TGAACATGTTCAATTTTCAGGGG 57.787 39.130 33.52 0.00 45.56 4.79
2084 2411 9.685276 ACCTAAGAAATGTATGATGAATGAACA 57.315 29.630 0.00 0.00 0.00 3.18
2085 2412 9.941664 CACCTAAGAAATGTATGATGAATGAAC 57.058 33.333 0.00 0.00 0.00 3.18
2086 2413 9.685276 ACACCTAAGAAATGTATGATGAATGAA 57.315 29.630 0.00 0.00 0.00 2.57
2087 2414 9.330063 GACACCTAAGAAATGTATGATGAATGA 57.670 33.333 0.00 0.00 0.00 2.57
2088 2415 8.562892 GGACACCTAAGAAATGTATGATGAATG 58.437 37.037 0.00 0.00 0.00 2.67
2106 2453 9.092338 TGTCTTAAGTTAGTTAATGGACACCTA 57.908 33.333 1.63 0.00 33.81 3.08
2107 2454 7.970102 TGTCTTAAGTTAGTTAATGGACACCT 58.030 34.615 1.63 0.00 33.81 4.00
2109 2456 8.665685 CCATGTCTTAAGTTAGTTAATGGACAC 58.334 37.037 13.30 0.00 38.04 3.67
2131 2478 0.894835 GGGCCAACCACTTAACCATG 59.105 55.000 4.39 0.00 39.85 3.66
2134 2481 0.111639 TCTGGGCCAACCACTTAACC 59.888 55.000 8.04 0.00 46.80 2.85
2135 2482 1.611977 GTTCTGGGCCAACCACTTAAC 59.388 52.381 8.04 0.13 46.80 2.01
2140 2487 1.903404 CAGGTTCTGGGCCAACCAC 60.903 63.158 25.47 14.06 46.80 4.16
2150 2497 4.007659 GGGTGGTACAATTACAGGTTCTG 58.992 47.826 0.00 0.00 44.16 3.02
2151 2498 3.653836 TGGGTGGTACAATTACAGGTTCT 59.346 43.478 0.00 0.00 44.16 3.01
2152 2499 4.023726 TGGGTGGTACAATTACAGGTTC 57.976 45.455 0.00 0.00 44.16 3.62
2155 2502 4.028993 ACTTGGGTGGTACAATTACAGG 57.971 45.455 0.00 0.00 44.16 4.00
2156 2503 4.825085 ACAACTTGGGTGGTACAATTACAG 59.175 41.667 0.00 0.00 44.16 2.74
2158 2505 5.299782 TCAACAACTTGGGTGGTACAATTAC 59.700 40.000 0.00 0.00 44.16 1.89
2159 2506 5.446860 TCAACAACTTGGGTGGTACAATTA 58.553 37.500 0.00 0.00 44.16 1.40
2160 2507 4.282496 TCAACAACTTGGGTGGTACAATT 58.718 39.130 0.00 0.00 44.16 2.32
2162 2509 3.367646 TCAACAACTTGGGTGGTACAA 57.632 42.857 0.00 0.00 44.16 2.41
2163 2510 3.367646 TTCAACAACTTGGGTGGTACA 57.632 42.857 0.00 0.00 0.00 2.90
2164 2511 3.886505 TCATTCAACAACTTGGGTGGTAC 59.113 43.478 0.00 0.00 0.00 3.34
2165 2512 3.886505 GTCATTCAACAACTTGGGTGGTA 59.113 43.478 0.00 0.00 0.00 3.25
2166 2513 2.693074 GTCATTCAACAACTTGGGTGGT 59.307 45.455 0.00 0.00 0.00 4.16
2167 2514 2.692557 TGTCATTCAACAACTTGGGTGG 59.307 45.455 0.00 0.00 0.00 4.61
2168 2515 3.631686 TCTGTCATTCAACAACTTGGGTG 59.368 43.478 0.00 0.00 0.00 4.61
2169 2516 3.897239 TCTGTCATTCAACAACTTGGGT 58.103 40.909 0.00 0.00 0.00 4.51
2170 2517 4.916983 TTCTGTCATTCAACAACTTGGG 57.083 40.909 0.00 0.00 0.00 4.12
2171 2518 5.745294 CAGTTTCTGTCATTCAACAACTTGG 59.255 40.000 0.00 0.00 30.54 3.61
2172 2519 6.554419 TCAGTTTCTGTCATTCAACAACTTG 58.446 36.000 0.00 0.00 30.54 3.16
2173 2520 6.757897 TCAGTTTCTGTCATTCAACAACTT 57.242 33.333 0.00 0.00 30.54 2.66
2174 2521 6.949352 ATCAGTTTCTGTCATTCAACAACT 57.051 33.333 0.00 0.00 32.10 3.16
2175 2522 8.292448 ACATATCAGTTTCTGTCATTCAACAAC 58.708 33.333 0.00 0.00 32.61 3.32
2176 2523 8.291740 CACATATCAGTTTCTGTCATTCAACAA 58.708 33.333 0.00 0.00 32.61 2.83
2180 2552 7.825761 ACATCACATATCAGTTTCTGTCATTCA 59.174 33.333 0.00 0.00 32.61 2.57
2210 2582 9.214957 CACTGTAAAGGACATACAACTTCATAA 57.785 33.333 0.00 0.00 37.45 1.90
2211 2583 8.372459 ACACTGTAAAGGACATACAACTTCATA 58.628 33.333 0.00 0.00 37.45 2.15
2212 2584 7.173218 CACACTGTAAAGGACATACAACTTCAT 59.827 37.037 0.00 0.00 37.45 2.57
2213 2585 6.481976 CACACTGTAAAGGACATACAACTTCA 59.518 38.462 0.00 0.00 37.45 3.02
2215 2587 6.354130 ACACACTGTAAAGGACATACAACTT 58.646 36.000 0.00 0.00 37.45 2.66
2217 2589 6.563381 CGAACACACTGTAAAGGACATACAAC 60.563 42.308 0.00 0.00 37.45 3.32
2218 2590 5.464057 CGAACACACTGTAAAGGACATACAA 59.536 40.000 0.00 0.00 37.45 2.41
2219 2591 4.986034 CGAACACACTGTAAAGGACATACA 59.014 41.667 0.00 0.00 37.45 2.29
2220 2592 4.387862 CCGAACACACTGTAAAGGACATAC 59.612 45.833 0.00 0.00 37.45 2.39
2226 2598 3.107642 ACTCCGAACACACTGTAAAGG 57.892 47.619 0.00 0.00 0.00 3.11
2227 2599 4.868067 AGTACTCCGAACACACTGTAAAG 58.132 43.478 0.00 0.00 0.00 1.85
2229 2601 4.924305 AAGTACTCCGAACACACTGTAA 57.076 40.909 0.00 0.00 0.00 2.41
2230 2602 7.870509 ATATAAGTACTCCGAACACACTGTA 57.129 36.000 0.00 0.00 0.00 2.74
2231 2603 6.770746 ATATAAGTACTCCGAACACACTGT 57.229 37.500 0.00 0.00 0.00 3.55
2232 2604 6.019801 GCAATATAAGTACTCCGAACACACTG 60.020 42.308 0.00 0.00 0.00 3.66
2233 2605 6.040878 GCAATATAAGTACTCCGAACACACT 58.959 40.000 0.00 0.00 0.00 3.55
2234 2606 5.051907 CGCAATATAAGTACTCCGAACACAC 60.052 44.000 0.00 0.00 0.00 3.82
2248 3085 9.208022 TCATAGTTTCAAGGATCGCAATATAAG 57.792 33.333 0.00 0.00 0.00 1.73
2249 3086 9.554395 TTCATAGTTTCAAGGATCGCAATATAA 57.446 29.630 0.00 0.00 0.00 0.98
2267 3104 7.577303 TGGCCTCTCATATTTCTTTCATAGTT 58.423 34.615 3.32 0.00 0.00 2.24
2269 3106 7.361885 GCATGGCCTCTCATATTTCTTTCATAG 60.362 40.741 3.32 0.00 0.00 2.23
2270 3107 6.432162 GCATGGCCTCTCATATTTCTTTCATA 59.568 38.462 3.32 0.00 0.00 2.15
2271 3108 5.243283 GCATGGCCTCTCATATTTCTTTCAT 59.757 40.000 3.32 0.00 0.00 2.57
2272 3109 4.581824 GCATGGCCTCTCATATTTCTTTCA 59.418 41.667 3.32 0.00 0.00 2.69
2273 3110 4.581824 TGCATGGCCTCTCATATTTCTTTC 59.418 41.667 3.32 0.00 0.00 2.62
2274 3111 4.539726 TGCATGGCCTCTCATATTTCTTT 58.460 39.130 3.32 0.00 0.00 2.52
2275 3112 4.174704 TGCATGGCCTCTCATATTTCTT 57.825 40.909 3.32 0.00 0.00 2.52
2276 3113 3.870538 TGCATGGCCTCTCATATTTCT 57.129 42.857 3.32 0.00 0.00 2.52
2277 3114 3.305199 GCTTGCATGGCCTCTCATATTTC 60.305 47.826 3.32 0.00 0.00 2.17
2281 3118 0.547553 TGCTTGCATGGCCTCTCATA 59.452 50.000 3.32 0.00 0.00 2.15
2290 3127 5.834169 TCAACAACATATATGCTTGCATGG 58.166 37.500 17.26 7.39 0.00 3.66
2297 3134 9.346005 TCATGAAGAATCAACAACATATATGCT 57.654 29.630 12.79 0.00 39.49 3.79
2303 3140 8.469200 GGGAAATCATGAAGAATCAACAACATA 58.531 33.333 0.00 0.00 39.49 2.29
2304 3141 7.038870 TGGGAAATCATGAAGAATCAACAACAT 60.039 33.333 0.00 0.00 39.49 2.71
2305 3142 6.267242 TGGGAAATCATGAAGAATCAACAACA 59.733 34.615 0.00 0.00 39.49 3.33
2306 3143 6.690530 TGGGAAATCATGAAGAATCAACAAC 58.309 36.000 0.00 0.00 39.49 3.32
2307 3144 6.914654 TGGGAAATCATGAAGAATCAACAA 57.085 33.333 0.00 0.00 39.49 2.83
2308 3145 6.914654 TTGGGAAATCATGAAGAATCAACA 57.085 33.333 0.00 0.00 39.49 3.33
2309 3146 8.782339 AATTTGGGAAATCATGAAGAATCAAC 57.218 30.769 0.00 0.00 39.49 3.18
2310 3147 9.221933 CAAATTTGGGAAATCATGAAGAATCAA 57.778 29.630 10.49 0.00 39.49 2.57
2337 3174 0.729690 GTTTAGCTGGCAGCAGTAGC 59.270 55.000 38.09 21.26 45.56 3.58
2338 3175 1.002366 CGTTTAGCTGGCAGCAGTAG 58.998 55.000 38.09 21.81 45.56 2.57
2339 3176 0.606096 TCGTTTAGCTGGCAGCAGTA 59.394 50.000 38.09 21.83 45.56 2.74
2340 3177 0.951040 GTCGTTTAGCTGGCAGCAGT 60.951 55.000 38.09 22.92 45.56 4.40
2341 3178 1.639298 GGTCGTTTAGCTGGCAGCAG 61.639 60.000 38.09 23.17 45.56 4.24
2342 3179 1.671054 GGTCGTTTAGCTGGCAGCA 60.671 57.895 38.09 22.58 45.56 4.41
2343 3180 2.399356 GGGTCGTTTAGCTGGCAGC 61.399 63.158 31.56 31.56 42.84 5.25
2344 3181 0.605319 TTGGGTCGTTTAGCTGGCAG 60.605 55.000 10.94 10.94 0.00 4.85
2345 3182 0.179015 TTTGGGTCGTTTAGCTGGCA 60.179 50.000 0.00 0.00 0.00 4.92
2346 3183 0.521735 CTTTGGGTCGTTTAGCTGGC 59.478 55.000 0.00 0.00 0.00 4.85
2347 3184 2.178912 TCTTTGGGTCGTTTAGCTGG 57.821 50.000 0.00 0.00 0.00 4.85
2348 3185 3.139077 AGTTCTTTGGGTCGTTTAGCTG 58.861 45.455 0.00 0.00 0.00 4.24
2351 3188 7.440255 TCTTTAGAAGTTCTTTGGGTCGTTTAG 59.560 37.037 11.40 0.00 0.00 1.85
2379 3219 7.428183 CGTGCATGGTTAAGATAACACAATTAC 59.572 37.037 0.00 0.00 0.00 1.89
2396 3236 1.942657 GAGCAATATGTCGTGCATGGT 59.057 47.619 5.98 0.00 43.42 3.55
2407 3247 8.133627 CCACTTCCTGAAAATTAGAGCAATATG 58.866 37.037 0.00 0.00 0.00 1.78
2414 3258 5.997746 TGACACCACTTCCTGAAAATTAGAG 59.002 40.000 0.00 0.00 0.00 2.43
2465 3309 4.202461 TGTTCCACTTCAACTATCTGCCTT 60.202 41.667 0.00 0.00 0.00 4.35
2519 3363 3.117491 ACATGGACTGATAAGATGCCG 57.883 47.619 0.00 0.00 0.00 5.69
2528 3372 4.648762 TGGTCAACAAAAACATGGACTGAT 59.351 37.500 0.00 0.00 0.00 2.90
2589 3433 6.686630 CACATGTTGCTAAAAGGTTTATGGA 58.313 36.000 0.00 0.00 0.00 3.41
3008 3852 7.327975 TGTTAGAACGTCTCCATTAACATCAT 58.672 34.615 0.00 0.00 0.00 2.45
3118 3964 4.392940 CTTGATAGTTTATCCTGCCCCTG 58.607 47.826 0.00 0.00 34.26 4.45
3137 3983 8.668510 ACTTAGTTATACATTGATCAGGCTTG 57.331 34.615 0.00 0.00 0.00 4.01
3398 4249 2.835156 TGTAGTAGGTATGCCAAGCACA 59.165 45.455 1.54 0.00 43.04 4.57
3458 4316 2.284417 CACATGAGCTCACATCATCACG 59.716 50.000 20.97 1.77 35.20 4.35
3507 4365 1.355381 TGGCATCTGGTTCATCTGGTT 59.645 47.619 0.00 0.00 0.00 3.67
3570 4428 2.964464 TGCCTTGCAGATTTGGAGAAAA 59.036 40.909 0.00 0.00 33.32 2.29
3847 4706 4.572571 TGTGGGTGAACCGGGTGC 62.573 66.667 6.32 0.00 44.64 5.01
3856 4715 2.813726 CCGGAGTTGGTGTGGGTGA 61.814 63.158 0.00 0.00 0.00 4.02
3862 4721 4.003788 CTCCGCCGGAGTTGGTGT 62.004 66.667 24.93 0.00 44.25 4.16
4104 4975 2.511452 CGGGAAGCCGGAGATGGAT 61.511 63.158 5.05 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.