Multiple sequence alignment - TraesCS5B01G182300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G182300 chr5B 100.000 6017 0 0 1 6017 332300500 332294484 0.000000e+00 11112.0
1 TraesCS5B01G182300 chr5B 99.510 816 4 0 2483 3298 48316277 48315462 0.000000e+00 1485.0
2 TraesCS5B01G182300 chr5B 100.000 32 0 0 35 66 130236449 130236418 6.510000e-05 60.2
3 TraesCS5B01G182300 chr5B 94.286 35 2 0 32 66 271942014 271941980 3.000000e-03 54.7
4 TraesCS5B01G182300 chr5D 96.754 2095 50 6 3925 6017 291505600 291503522 0.000000e+00 3476.0
5 TraesCS5B01G182300 chr5D 98.453 1551 24 0 932 2482 291507134 291505584 0.000000e+00 2732.0
6 TraesCS5B01G182300 chr5D 78.378 222 39 9 545 761 540230775 540230558 1.050000e-27 135.0
7 TraesCS5B01G182300 chr5D 81.955 133 20 4 753 883 379557121 379557251 6.380000e-20 110.0
8 TraesCS5B01G182300 chr5A 96.231 1804 56 5 3927 5728 383887967 383886174 0.000000e+00 2944.0
9 TraesCS5B01G182300 chr5A 97.042 1555 42 3 932 2482 383889507 383887953 0.000000e+00 2614.0
10 TraesCS5B01G182300 chr5A 99.523 629 2 1 3301 3929 259067031 259066404 0.000000e+00 1144.0
11 TraesCS5B01G182300 chr5A 92.549 255 16 3 5761 6014 383886176 383885924 4.430000e-96 363.0
12 TraesCS5B01G182300 chr5A 83.217 143 20 4 755 894 646886885 646886744 1.760000e-25 128.0
13 TraesCS5B01G182300 chr5A 83.206 131 20 2 754 883 425560043 425560172 1.060000e-22 119.0
14 TraesCS5B01G182300 chr5A 81.818 143 21 5 754 893 640614696 640614556 1.370000e-21 115.0
15 TraesCS5B01G182300 chr5A 93.333 60 2 2 58 117 584722049 584721992 2.990000e-13 87.9
16 TraesCS5B01G182300 chr7A 99.387 816 5 0 2483 3298 165797619 165796804 0.000000e+00 1480.0
17 TraesCS5B01G182300 chr7A 99.681 626 2 0 3301 3926 265438569 265437944 0.000000e+00 1146.0
18 TraesCS5B01G182300 chr7A 99.054 634 5 1 3301 3934 357350931 357351563 0.000000e+00 1136.0
19 TraesCS5B01G182300 chr4B 99.508 813 4 0 2483 3295 5372861 5373673 0.000000e+00 1480.0
20 TraesCS5B01G182300 chr4B 99.145 819 7 0 2477 3295 322670128 322670946 0.000000e+00 1474.0
21 TraesCS5B01G182300 chr4B 84.343 198 27 4 557 753 255358854 255358660 2.210000e-44 191.0
22 TraesCS5B01G182300 chr4B 79.866 149 24 5 754 896 536632256 536632404 2.970000e-18 104.0
23 TraesCS5B01G182300 chr4B 78.107 169 29 8 757 922 668122815 668122652 3.840000e-17 100.0
24 TraesCS5B01G182300 chr4B 100.000 32 0 0 35 66 553110054 553110085 6.510000e-05 60.2
25 TraesCS5B01G182300 chr4B 94.286 35 2 0 42 76 65621056 65621022 3.000000e-03 54.7
26 TraesCS5B01G182300 chr4A 99.387 816 5 0 2483 3298 2224719 2223904 0.000000e+00 1480.0
27 TraesCS5B01G182300 chr4A 99.145 819 7 0 2477 3295 42774027 42774845 0.000000e+00 1474.0
28 TraesCS5B01G182300 chr4A 81.250 192 29 6 571 762 180756533 180756717 1.350000e-31 148.0
29 TraesCS5B01G182300 chr4A 85.039 127 17 2 754 879 584034295 584034420 1.760000e-25 128.0
30 TraesCS5B01G182300 chr4A 81.022 137 24 2 754 889 577380034 577380169 2.290000e-19 108.0
31 TraesCS5B01G182300 chr1B 99.508 813 4 0 2483 3295 451910456 451911268 0.000000e+00 1480.0
32 TraesCS5B01G182300 chr1B 99.145 819 7 0 2477 3295 38489419 38490237 0.000000e+00 1474.0
33 TraesCS5B01G182300 chr1B 84.146 164 24 2 599 761 12451555 12451393 2.250000e-34 158.0
34 TraesCS5B01G182300 chr1B 80.690 145 25 3 754 896 403265837 403265694 6.380000e-20 110.0
35 TraesCS5B01G182300 chr1B 100.000 32 0 0 35 66 462513734 462513703 6.510000e-05 60.2
36 TraesCS5B01G182300 chr1A 99.387 816 5 0 2483 3298 492998509 492997694 0.000000e+00 1480.0
37 TraesCS5B01G182300 chr1A 80.541 185 35 1 568 751 577819163 577819347 2.260000e-29 141.0
38 TraesCS5B01G182300 chr1A 83.108 148 15 6 754 894 480825176 480825032 6.330000e-25 126.0
39 TraesCS5B01G182300 chr1A 80.741 135 23 3 761 893 367025259 367025126 1.070000e-17 102.0
40 TraesCS5B01G182300 chr1A 100.000 29 0 0 38 66 19305908 19305936 3.000000e-03 54.7
41 TraesCS5B01G182300 chr1A 100.000 29 0 0 38 66 19363045 19363073 3.000000e-03 54.7
42 TraesCS5B01G182300 chr6B 99.840 625 1 0 3301 3925 507473803 507473179 0.000000e+00 1149.0
43 TraesCS5B01G182300 chr6B 84.896 192 26 3 560 750 542383505 542383694 2.210000e-44 191.0
44 TraesCS5B01G182300 chr6B 81.643 207 35 3 559 763 624698965 624699170 1.040000e-37 169.0
45 TraesCS5B01G182300 chr6B 81.026 195 36 1 559 752 195273388 195273582 2.900000e-33 154.0
46 TraesCS5B01G182300 chr6B 82.639 144 23 2 754 896 226864037 226863895 6.330000e-25 126.0
47 TraesCS5B01G182300 chr3B 99.681 626 2 0 3301 3926 595238224 595237599 0.000000e+00 1146.0
48 TraesCS5B01G182300 chr3B 99.365 630 3 1 3301 3930 718283185 718282557 0.000000e+00 1140.0
49 TraesCS5B01G182300 chr3B 82.979 141 21 3 755 893 489979047 489979186 2.280000e-24 124.0
50 TraesCS5B01G182300 chr2B 99.522 628 3 0 3301 3928 465127098 465126471 0.000000e+00 1144.0
51 TraesCS5B01G182300 chr7B 99.366 631 3 1 3301 3930 496416195 496416825 0.000000e+00 1142.0
52 TraesCS5B01G182300 chr7B 85.567 194 24 4 558 750 749027777 749027587 3.680000e-47 200.0
53 TraesCS5B01G182300 chr7B 85.052 194 26 3 558 750 748956516 748956325 1.710000e-45 195.0
54 TraesCS5B01G182300 chr7B 84.021 194 29 2 558 750 640210347 640210155 1.030000e-42 185.0
55 TraesCS5B01G182300 chr7B 83.217 143 21 3 757 897 745305383 745305242 1.760000e-25 128.0
56 TraesCS5B01G182300 chr7B 100.000 32 0 0 35 66 198474264 198474233 6.510000e-05 60.2
57 TraesCS5B01G182300 chr3A 99.054 634 6 0 3301 3934 198172647 198172014 0.000000e+00 1138.0
58 TraesCS5B01G182300 chr3A 83.846 130 19 2 754 882 697773523 697773651 8.190000e-24 122.0
59 TraesCS5B01G182300 chr3A 81.560 141 23 3 755 893 500525002 500525141 4.930000e-21 113.0
60 TraesCS5B01G182300 chr2A 83.507 673 75 11 86 750 771341824 771342468 4.010000e-166 595.0
61 TraesCS5B01G182300 chr4D 89.789 284 29 0 478 761 498760017 498760300 1.230000e-96 364.0
62 TraesCS5B01G182300 chr4D 83.010 206 28 7 559 762 358472567 358472367 4.790000e-41 180.0
63 TraesCS5B01G182300 chr4D 83.951 81 10 3 754 831 173214382 173214302 2.330000e-09 75.0
64 TraesCS5B01G182300 chr4D 97.222 36 0 1 29 64 143776847 143776813 6.510000e-05 60.2
65 TraesCS5B01G182300 chr4D 100.000 32 0 0 35 66 406399571 406399602 6.510000e-05 60.2
66 TraesCS5B01G182300 chr4D 100.000 29 0 0 35 63 44089065 44089037 3.000000e-03 54.7
67 TraesCS5B01G182300 chr4D 94.118 34 2 0 33 66 128908479 128908512 1.100000e-02 52.8
68 TraesCS5B01G182300 chr4D 100.000 28 0 0 39 66 364084214 364084241 1.100000e-02 52.8
69 TraesCS5B01G182300 chrUn 84.817 191 26 3 558 747 216084945 216085133 7.960000e-44 189.0
70 TraesCS5B01G182300 chrUn 84.536 194 27 3 558 750 244197154 244196963 7.960000e-44 189.0
71 TraesCS5B01G182300 chrUn 100.000 31 0 0 36 66 96474151 96474121 2.340000e-04 58.4
72 TraesCS5B01G182300 chrUn 94.737 38 0 2 725 761 452318454 452318490 2.340000e-04 58.4
73 TraesCS5B01G182300 chrUn 100.000 29 0 0 38 66 331152103 331152131 3.000000e-03 54.7
74 TraesCS5B01G182300 chr6D 81.879 149 24 3 754 900 27451700 27451553 8.190000e-24 122.0
75 TraesCS5B01G182300 chr6D 84.444 90 13 1 754 842 431197957 431198046 2.990000e-13 87.9
76 TraesCS5B01G182300 chr6D 100.000 28 0 0 39 66 34086390 34086363 1.100000e-02 52.8
77 TraesCS5B01G182300 chr2D 81.507 146 24 3 754 897 507044815 507044959 3.810000e-22 117.0
78 TraesCS5B01G182300 chr2D 81.884 138 20 4 754 888 616204189 616204054 1.770000e-20 111.0
79 TraesCS5B01G182300 chr2D 100.000 30 0 0 37 66 111148562 111148591 8.420000e-04 56.5
80 TraesCS5B01G182300 chr3D 84.483 116 15 3 780 893 375721080 375721194 1.770000e-20 111.0
81 TraesCS5B01G182300 chr3D 83.471 121 18 2 754 873 531052662 531052543 1.770000e-20 111.0
82 TraesCS5B01G182300 chr3D 88.889 81 8 1 761 840 151428846 151428926 1.380000e-16 99.0
83 TraesCS5B01G182300 chr1D 79.389 131 25 2 754 883 30365583 30365712 2.310000e-14 91.6
84 TraesCS5B01G182300 chr1D 100.000 29 0 0 35 63 456443461 456443489 3.000000e-03 54.7
85 TraesCS5B01G182300 chr6A 100.000 31 0 0 36 66 27191877 27191847 2.340000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G182300 chr5B 332294484 332300500 6016 True 11112.000000 11112 100.0000 1 6017 1 chr5B.!!$R4 6016
1 TraesCS5B01G182300 chr5B 48315462 48316277 815 True 1485.000000 1485 99.5100 2483 3298 1 chr5B.!!$R1 815
2 TraesCS5B01G182300 chr5D 291503522 291507134 3612 True 3104.000000 3476 97.6035 932 6017 2 chr5D.!!$R2 5085
3 TraesCS5B01G182300 chr5A 383885924 383889507 3583 True 1973.666667 2944 95.2740 932 6014 3 chr5A.!!$R5 5082
4 TraesCS5B01G182300 chr5A 259066404 259067031 627 True 1144.000000 1144 99.5230 3301 3929 1 chr5A.!!$R1 628
5 TraesCS5B01G182300 chr7A 165796804 165797619 815 True 1480.000000 1480 99.3870 2483 3298 1 chr7A.!!$R1 815
6 TraesCS5B01G182300 chr7A 265437944 265438569 625 True 1146.000000 1146 99.6810 3301 3926 1 chr7A.!!$R2 625
7 TraesCS5B01G182300 chr7A 357350931 357351563 632 False 1136.000000 1136 99.0540 3301 3934 1 chr7A.!!$F1 633
8 TraesCS5B01G182300 chr4B 5372861 5373673 812 False 1480.000000 1480 99.5080 2483 3295 1 chr4B.!!$F1 812
9 TraesCS5B01G182300 chr4B 322670128 322670946 818 False 1474.000000 1474 99.1450 2477 3295 1 chr4B.!!$F2 818
10 TraesCS5B01G182300 chr4A 2223904 2224719 815 True 1480.000000 1480 99.3870 2483 3298 1 chr4A.!!$R1 815
11 TraesCS5B01G182300 chr4A 42774027 42774845 818 False 1474.000000 1474 99.1450 2477 3295 1 chr4A.!!$F1 818
12 TraesCS5B01G182300 chr1B 451910456 451911268 812 False 1480.000000 1480 99.5080 2483 3295 1 chr1B.!!$F2 812
13 TraesCS5B01G182300 chr1B 38489419 38490237 818 False 1474.000000 1474 99.1450 2477 3295 1 chr1B.!!$F1 818
14 TraesCS5B01G182300 chr1A 492997694 492998509 815 True 1480.000000 1480 99.3870 2483 3298 1 chr1A.!!$R3 815
15 TraesCS5B01G182300 chr6B 507473179 507473803 624 True 1149.000000 1149 99.8400 3301 3925 1 chr6B.!!$R2 624
16 TraesCS5B01G182300 chr3B 595237599 595238224 625 True 1146.000000 1146 99.6810 3301 3926 1 chr3B.!!$R1 625
17 TraesCS5B01G182300 chr3B 718282557 718283185 628 True 1140.000000 1140 99.3650 3301 3930 1 chr3B.!!$R2 629
18 TraesCS5B01G182300 chr2B 465126471 465127098 627 True 1144.000000 1144 99.5220 3301 3928 1 chr2B.!!$R1 627
19 TraesCS5B01G182300 chr7B 496416195 496416825 630 False 1142.000000 1142 99.3660 3301 3930 1 chr7B.!!$F1 629
20 TraesCS5B01G182300 chr3A 198172014 198172647 633 True 1138.000000 1138 99.0540 3301 3934 1 chr3A.!!$R1 633
21 TraesCS5B01G182300 chr2A 771341824 771342468 644 False 595.000000 595 83.5070 86 750 1 chr2A.!!$F1 664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
305 314 0.036388 AACCAATCGGACAGTCGCAT 60.036 50.000 0.00 0.00 35.59 4.73 F
539 548 0.181587 TGGGAACGAGGAAGCAAACA 59.818 50.000 0.00 0.00 0.00 2.83 F
923 932 0.393537 CTAGGGTTGCTGCAAGGAGG 60.394 60.000 16.53 1.89 33.89 4.30 F
1089 1102 0.461961 CCTTCTCCGGAAAGCTCGAT 59.538 55.000 5.23 0.00 0.00 3.59 F
1314 1327 1.220206 CACTCTCCTCCATGCGCTT 59.780 57.895 9.73 0.00 0.00 4.68 F
3035 3048 1.427435 GCACTCTCTTGTCACAGAGC 58.573 55.000 7.62 0.00 40.00 4.09 F
3935 3948 2.882761 AGGCGGAGTTAACTTTGTTTCC 59.117 45.455 10.02 4.45 0.00 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1314 1327 0.611896 TGAGGGACGATGAGACTGCA 60.612 55.000 0.00 0.0 0.00 4.41 R
1357 1370 0.804989 GAGTCCTTCACCGGCATTTG 59.195 55.000 0.00 0.0 0.00 2.32 R
2181 2194 0.959372 GCAGCTGCATTCCACACTCT 60.959 55.000 33.36 0.0 41.59 3.24 R
2474 2487 3.157881 TGTTGTTGTTGTTGGTCTTGGA 58.842 40.909 0.00 0.0 0.00 3.53 R
3299 3312 1.005569 TGGAGTGGTAGACGTCAGGAT 59.994 52.381 19.50 0.0 0.00 3.24 R
4449 4462 1.737363 GCACTCTTGCCTAGTTCGGAG 60.737 57.143 0.00 0.0 43.66 4.63 R
5227 5240 0.325933 CCTTCCCATCTCAGCACACA 59.674 55.000 0.00 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 9.000486 AGTTTTTCTTATTTTCTACTTCCTCCG 58.000 33.333 0.00 0.00 0.00 4.63
52 53 8.781196 GTTTTTCTTATTTTCTACTTCCTCCGT 58.219 33.333 0.00 0.00 0.00 4.69
53 54 8.913487 TTTTCTTATTTTCTACTTCCTCCGTT 57.087 30.769 0.00 0.00 0.00 4.44
54 55 8.543862 TTTCTTATTTTCTACTTCCTCCGTTC 57.456 34.615 0.00 0.00 0.00 3.95
55 56 6.637657 TCTTATTTTCTACTTCCTCCGTTCC 58.362 40.000 0.00 0.00 0.00 3.62
56 57 6.439692 TCTTATTTTCTACTTCCTCCGTTCCT 59.560 38.462 0.00 0.00 0.00 3.36
57 58 7.616935 TCTTATTTTCTACTTCCTCCGTTCCTA 59.383 37.037 0.00 0.00 0.00 2.94
58 59 6.616237 ATTTTCTACTTCCTCCGTTCCTAA 57.384 37.500 0.00 0.00 0.00 2.69
59 60 6.423776 TTTTCTACTTCCTCCGTTCCTAAA 57.576 37.500 0.00 0.00 0.00 1.85
60 61 6.616237 TTTCTACTTCCTCCGTTCCTAAAT 57.384 37.500 0.00 0.00 0.00 1.40
61 62 7.722949 TTTCTACTTCCTCCGTTCCTAAATA 57.277 36.000 0.00 0.00 0.00 1.40
62 63 7.909485 TTCTACTTCCTCCGTTCCTAAATAT 57.091 36.000 0.00 0.00 0.00 1.28
63 64 9.425248 TTTCTACTTCCTCCGTTCCTAAATATA 57.575 33.333 0.00 0.00 0.00 0.86
64 65 9.425248 TTCTACTTCCTCCGTTCCTAAATATAA 57.575 33.333 0.00 0.00 0.00 0.98
65 66 9.075678 TCTACTTCCTCCGTTCCTAAATATAAG 57.924 37.037 0.00 0.00 0.00 1.73
66 67 7.063934 ACTTCCTCCGTTCCTAAATATAAGG 57.936 40.000 0.00 0.00 35.26 2.69
67 68 5.479124 TCCTCCGTTCCTAAATATAAGGC 57.521 43.478 0.01 0.00 33.84 4.35
68 69 4.285260 TCCTCCGTTCCTAAATATAAGGCC 59.715 45.833 0.00 0.00 33.84 5.19
69 70 4.565028 CCTCCGTTCCTAAATATAAGGCCC 60.565 50.000 0.00 0.00 33.84 5.80
70 71 3.328637 TCCGTTCCTAAATATAAGGCCCC 59.671 47.826 0.00 0.00 33.84 5.80
71 72 3.332034 CGTTCCTAAATATAAGGCCCCG 58.668 50.000 0.00 0.00 33.84 5.73
72 73 3.244318 CGTTCCTAAATATAAGGCCCCGT 60.244 47.826 0.00 0.00 33.84 5.28
73 74 4.722220 GTTCCTAAATATAAGGCCCCGTT 58.278 43.478 0.00 0.00 33.84 4.44
74 75 5.135383 GTTCCTAAATATAAGGCCCCGTTT 58.865 41.667 0.00 0.00 33.84 3.60
75 76 4.721132 TCCTAAATATAAGGCCCCGTTTG 58.279 43.478 0.00 0.00 33.84 2.93
76 77 4.412858 TCCTAAATATAAGGCCCCGTTTGA 59.587 41.667 0.00 0.00 33.84 2.69
77 78 5.073965 TCCTAAATATAAGGCCCCGTTTGAT 59.926 40.000 0.00 0.00 33.84 2.57
78 79 6.272792 TCCTAAATATAAGGCCCCGTTTGATA 59.727 38.462 0.00 0.00 33.84 2.15
79 80 6.598064 CCTAAATATAAGGCCCCGTTTGATAG 59.402 42.308 0.00 0.00 0.00 2.08
80 81 5.578157 AATATAAGGCCCCGTTTGATAGT 57.422 39.130 0.00 0.00 0.00 2.12
81 82 6.691255 AATATAAGGCCCCGTTTGATAGTA 57.309 37.500 0.00 0.00 0.00 1.82
82 83 6.691255 ATATAAGGCCCCGTTTGATAGTAA 57.309 37.500 0.00 0.00 0.00 2.24
83 84 3.724732 AAGGCCCCGTTTGATAGTAAA 57.275 42.857 0.00 0.00 0.00 2.01
84 85 3.277142 AGGCCCCGTTTGATAGTAAAG 57.723 47.619 0.00 0.00 0.00 1.85
130 139 5.935789 TGAAAACTACAACCTATAGGCACAC 59.064 40.000 19.25 0.96 39.32 3.82
138 147 3.507411 ACCTATAGGCACACGATACCAT 58.493 45.455 19.25 0.00 39.32 3.55
153 162 7.491372 ACACGATACCATAGTTTTGACATACAG 59.509 37.037 0.00 0.00 0.00 2.74
157 166 9.817809 GATACCATAGTTTTGACATACAGAAGA 57.182 33.333 0.00 0.00 0.00 2.87
201 210 1.665169 CAAACCTGTTTGGCTTGTTGC 59.335 47.619 13.64 0.00 44.47 4.17
203 212 0.746659 ACCTGTTTGGCTTGTTGCTC 59.253 50.000 0.00 0.00 42.39 4.26
204 213 0.746063 CCTGTTTGGCTTGTTGCTCA 59.254 50.000 0.00 0.00 42.39 4.26
205 214 1.536709 CCTGTTTGGCTTGTTGCTCAC 60.537 52.381 0.00 0.00 42.39 3.51
206 215 0.100325 TGTTTGGCTTGTTGCTCACG 59.900 50.000 0.00 0.00 42.39 4.35
207 216 0.100503 GTTTGGCTTGTTGCTCACGT 59.899 50.000 0.00 0.00 42.39 4.49
208 217 1.332375 GTTTGGCTTGTTGCTCACGTA 59.668 47.619 0.00 0.00 42.39 3.57
209 218 1.669604 TTGGCTTGTTGCTCACGTAA 58.330 45.000 0.00 0.00 42.39 3.18
210 219 1.669604 TGGCTTGTTGCTCACGTAAA 58.330 45.000 0.00 0.00 42.39 2.01
211 220 2.017782 TGGCTTGTTGCTCACGTAAAA 58.982 42.857 0.00 0.00 42.39 1.52
212 221 2.223386 TGGCTTGTTGCTCACGTAAAAC 60.223 45.455 0.00 0.00 42.39 2.43
213 222 2.223386 GGCTTGTTGCTCACGTAAAACA 60.223 45.455 0.00 0.00 42.39 2.83
214 223 3.550030 GGCTTGTTGCTCACGTAAAACAT 60.550 43.478 0.00 0.00 42.39 2.71
225 234 8.240682 TGCTCACGTAAAACATAAATTAGCAAT 58.759 29.630 0.00 0.00 0.00 3.56
250 259 1.606668 CCCAGTTACAAACACGCATGT 59.393 47.619 0.00 0.00 42.46 3.21
255 264 4.148522 CAGTTACAAACACGCATGTACGTA 59.851 41.667 0.00 0.00 46.34 3.57
256 265 4.148696 AGTTACAAACACGCATGTACGTAC 59.851 41.667 18.90 18.90 46.34 3.67
260 269 1.705256 ACACGCATGTACGTACCAAG 58.295 50.000 22.43 12.99 46.34 3.61
263 272 1.337447 ACGCATGTACGTACCAAGCTT 60.337 47.619 22.43 13.79 46.19 3.74
267 276 2.736144 TGTACGTACCAAGCTTCCTG 57.264 50.000 22.43 0.00 0.00 3.86
280 289 0.798776 CTTCCTGGTCGTTGCACATC 59.201 55.000 0.00 0.00 0.00 3.06
292 301 2.291209 TGCACATCTGGACAACCAAT 57.709 45.000 0.00 0.00 46.32 3.16
293 302 2.161855 TGCACATCTGGACAACCAATC 58.838 47.619 0.00 0.00 46.32 2.67
294 303 1.131126 GCACATCTGGACAACCAATCG 59.869 52.381 0.00 0.00 46.32 3.34
295 304 1.739466 CACATCTGGACAACCAATCGG 59.261 52.381 0.00 0.00 46.32 4.18
296 305 1.628340 ACATCTGGACAACCAATCGGA 59.372 47.619 0.00 0.00 46.32 4.55
297 306 2.009774 CATCTGGACAACCAATCGGAC 58.990 52.381 0.00 0.00 46.32 4.79
298 307 1.052617 TCTGGACAACCAATCGGACA 58.947 50.000 0.00 0.00 46.32 4.02
299 308 1.001974 TCTGGACAACCAATCGGACAG 59.998 52.381 0.00 0.00 46.32 3.51
300 309 0.762418 TGGACAACCAATCGGACAGT 59.238 50.000 0.00 0.00 43.91 3.55
302 311 1.068474 GACAACCAATCGGACAGTCG 58.932 55.000 0.00 0.00 35.59 4.18
303 312 0.949105 ACAACCAATCGGACAGTCGC 60.949 55.000 0.00 0.00 35.59 5.19
304 313 0.948623 CAACCAATCGGACAGTCGCA 60.949 55.000 0.00 0.00 35.59 5.10
305 314 0.036388 AACCAATCGGACAGTCGCAT 60.036 50.000 0.00 0.00 35.59 4.73
306 315 0.740868 ACCAATCGGACAGTCGCATG 60.741 55.000 0.00 0.00 35.59 4.06
307 316 1.349627 CAATCGGACAGTCGCATGC 59.650 57.895 7.91 7.91 0.00 4.06
308 317 1.079197 AATCGGACAGTCGCATGCA 60.079 52.632 19.57 1.73 0.00 3.96
309 318 0.462581 AATCGGACAGTCGCATGCAT 60.463 50.000 19.57 0.00 0.00 3.96
310 319 0.389025 ATCGGACAGTCGCATGCATA 59.611 50.000 19.57 1.39 0.00 3.14
319 328 4.156556 ACAGTCGCATGCATAAACTTGAAT 59.843 37.500 19.57 0.00 0.00 2.57
320 329 4.497966 CAGTCGCATGCATAAACTTGAATG 59.502 41.667 19.57 9.54 35.96 2.67
335 344 0.248289 GAATGGCCATGCACAAAGCT 59.752 50.000 21.63 0.00 45.94 3.74
338 347 0.966875 TGGCCATGCACAAAGCTAGG 60.967 55.000 0.00 0.00 45.94 3.02
349 358 4.558697 GCACAAAGCTAGGTTACCAAAAGG 60.559 45.833 7.76 0.00 41.15 3.11
354 363 2.356844 GCTAGGTTACCAAAAGGGGAGG 60.357 54.545 3.51 0.00 42.91 4.30
355 364 1.842699 AGGTTACCAAAAGGGGAGGT 58.157 50.000 3.51 0.00 42.91 3.85
382 391 0.741221 CTACCAGGAACGAAGCTGCC 60.741 60.000 0.00 0.00 0.00 4.85
384 393 2.357517 CAGGAACGAAGCTGCCGT 60.358 61.111 8.40 8.40 42.61 5.68
413 422 2.109126 GCTGGAACACTCGGCCATC 61.109 63.158 2.24 0.00 0.00 3.51
422 431 1.880340 CTCGGCCATCTTCAGCGTC 60.880 63.158 2.24 0.00 0.00 5.19
429 438 2.989881 ATCTTCAGCGTCGCCGTCA 61.990 57.895 14.86 0.00 36.15 4.35
438 447 4.351938 TCGCCGTCAAGGGTCACG 62.352 66.667 0.00 0.00 41.48 4.35
439 448 4.351938 CGCCGTCAAGGGTCACGA 62.352 66.667 0.00 0.00 41.48 4.35
440 449 2.737376 GCCGTCAAGGGTCACGAC 60.737 66.667 0.00 0.00 41.48 4.34
442 451 2.430244 CGTCAAGGGTCACGACGG 60.430 66.667 0.00 0.00 46.59 4.79
443 452 2.732658 GTCAAGGGTCACGACGGT 59.267 61.111 0.00 0.00 0.00 4.83
444 453 1.372623 GTCAAGGGTCACGACGGTC 60.373 63.158 0.00 0.00 0.00 4.79
448 457 3.608662 GGGTCACGACGGTCCACA 61.609 66.667 1.91 0.00 0.00 4.17
453 462 1.663702 CACGACGGTCCACAGGAAC 60.664 63.158 1.91 0.00 35.78 3.62
454 463 2.129146 ACGACGGTCCACAGGAACA 61.129 57.895 1.91 0.00 39.88 3.18
461 470 0.320374 GTCCACAGGAACATCCACGA 59.680 55.000 0.00 0.00 39.61 4.35
463 472 1.014044 CCACAGGAACATCCACGACG 61.014 60.000 0.00 0.00 39.61 5.12
465 474 1.292223 CAGGAACATCCACGACGGT 59.708 57.895 0.00 0.00 39.61 4.83
467 476 1.005394 GGAACATCCACGACGGTGT 60.005 57.895 0.00 0.00 42.80 4.16
480 489 3.179265 GGTGTCGACGATGCACCG 61.179 66.667 18.47 0.00 42.43 4.94
503 512 2.283145 AGCCAAGCTGAATTGAGTGT 57.717 45.000 0.00 0.00 37.57 3.55
518 527 2.233676 TGAGTGTATCGAGTTGTGCCAT 59.766 45.455 0.00 0.00 0.00 4.40
539 548 0.181587 TGGGAACGAGGAAGCAAACA 59.818 50.000 0.00 0.00 0.00 2.83
555 564 1.981256 AACATGCCCGTTTTCTCACT 58.019 45.000 0.00 0.00 0.00 3.41
588 597 2.271944 AAAAAGGAGGTCCGAGGTTG 57.728 50.000 0.00 0.00 42.08 3.77
624 633 6.350110 GCAGAGAAAATACTATGGTTTGGCAA 60.350 38.462 0.00 0.00 30.92 4.52
625 634 7.601856 CAGAGAAAATACTATGGTTTGGCAAA 58.398 34.615 8.93 8.93 0.00 3.68
626 635 8.253113 CAGAGAAAATACTATGGTTTGGCAAAT 58.747 33.333 16.74 2.68 0.00 2.32
638 647 7.624360 TGGTTTGGCAAATACTCTAGTATTG 57.376 36.000 16.74 10.41 46.98 1.90
643 652 7.859325 TGGCAAATACTCTAGTATTGAAACC 57.141 36.000 14.48 13.23 46.98 3.27
657 666 7.937649 AGTATTGAAACCACAGTTTTTAGACC 58.062 34.615 0.00 0.00 46.25 3.85
658 667 5.585820 TTGAAACCACAGTTTTTAGACCC 57.414 39.130 0.00 0.00 46.25 4.46
660 669 5.017490 TGAAACCACAGTTTTTAGACCCAA 58.983 37.500 0.00 0.00 46.25 4.12
673 682 0.755327 GACCCAACCAAACAGCCTGT 60.755 55.000 0.00 0.00 0.00 4.00
690 699 7.871853 ACAGCCTGTTGTAAATAAAACTACAG 58.128 34.615 9.77 9.77 44.80 2.74
750 759 9.694137 TTAAAAATACTTTGTTATCAAACGGGG 57.306 29.630 0.00 0.00 38.44 5.73
751 760 4.976224 ATACTTTGTTATCAAACGGGGC 57.024 40.909 0.00 0.00 38.44 5.80
752 761 1.890489 ACTTTGTTATCAAACGGGGCC 59.110 47.619 0.00 0.00 38.44 5.80
753 762 2.167662 CTTTGTTATCAAACGGGGCCT 58.832 47.619 0.84 0.00 38.44 5.19
754 763 3.244981 ACTTTGTTATCAAACGGGGCCTA 60.245 43.478 0.84 0.00 38.44 3.93
755 764 3.436577 TTGTTATCAAACGGGGCCTAA 57.563 42.857 0.84 0.00 38.53 2.69
756 765 2.993937 TGTTATCAAACGGGGCCTAAG 58.006 47.619 0.84 0.00 38.53 2.18
757 766 2.306512 TGTTATCAAACGGGGCCTAAGT 59.693 45.455 0.84 0.00 38.53 2.24
758 767 2.941064 GTTATCAAACGGGGCCTAAGTC 59.059 50.000 0.84 0.00 0.00 3.01
759 768 1.286248 ATCAAACGGGGCCTAAGTCT 58.714 50.000 0.84 0.00 0.00 3.24
760 769 1.061546 TCAAACGGGGCCTAAGTCTT 58.938 50.000 0.84 0.00 0.00 3.01
761 770 1.422402 TCAAACGGGGCCTAAGTCTTT 59.578 47.619 0.84 0.00 0.00 2.52
762 771 2.158579 TCAAACGGGGCCTAAGTCTTTT 60.159 45.455 0.84 0.00 0.00 2.27
763 772 2.626266 CAAACGGGGCCTAAGTCTTTTT 59.374 45.455 0.84 0.00 0.00 1.94
764 773 3.793819 AACGGGGCCTAAGTCTTTTTA 57.206 42.857 0.84 0.00 0.00 1.52
765 774 3.793819 ACGGGGCCTAAGTCTTTTTAA 57.206 42.857 0.84 0.00 0.00 1.52
766 775 4.103013 ACGGGGCCTAAGTCTTTTTAAA 57.897 40.909 0.84 0.00 0.00 1.52
767 776 4.472496 ACGGGGCCTAAGTCTTTTTAAAA 58.528 39.130 0.84 0.00 0.00 1.52
768 777 4.894705 ACGGGGCCTAAGTCTTTTTAAAAA 59.105 37.500 12.62 12.62 0.00 1.94
769 778 5.541101 ACGGGGCCTAAGTCTTTTTAAAAAT 59.459 36.000 13.55 2.17 0.00 1.82
770 779 6.042322 ACGGGGCCTAAGTCTTTTTAAAAATT 59.958 34.615 13.55 8.24 0.00 1.82
771 780 6.932400 CGGGGCCTAAGTCTTTTTAAAAATTT 59.068 34.615 13.55 10.80 0.00 1.82
772 781 7.117236 CGGGGCCTAAGTCTTTTTAAAAATTTC 59.883 37.037 13.55 7.56 0.00 2.17
773 782 7.934665 GGGGCCTAAGTCTTTTTAAAAATTTCA 59.065 33.333 13.55 0.00 0.00 2.69
774 783 8.770828 GGGCCTAAGTCTTTTTAAAAATTTCAC 58.229 33.333 13.55 8.44 0.00 3.18
775 784 9.542462 GGCCTAAGTCTTTTTAAAAATTTCACT 57.458 29.630 13.55 10.25 0.00 3.41
885 894 8.888579 ATAGAAAGACGTACATTTAGGAATGG 57.111 34.615 0.00 0.00 45.56 3.16
886 895 6.942976 AGAAAGACGTACATTTAGGAATGGA 58.057 36.000 0.00 0.00 45.56 3.41
887 896 7.042335 AGAAAGACGTACATTTAGGAATGGAG 58.958 38.462 0.00 0.00 45.56 3.86
888 897 5.277857 AGACGTACATTTAGGAATGGAGG 57.722 43.478 0.00 3.81 45.56 4.30
889 898 4.101119 AGACGTACATTTAGGAATGGAGGG 59.899 45.833 8.41 0.00 43.22 4.30
890 899 3.135895 ACGTACATTTAGGAATGGAGGGG 59.864 47.826 8.41 0.00 43.22 4.79
891 900 3.135895 CGTACATTTAGGAATGGAGGGGT 59.864 47.826 4.39 0.00 45.56 4.95
892 901 4.345837 CGTACATTTAGGAATGGAGGGGTA 59.654 45.833 4.39 0.00 45.56 3.69
893 902 4.790718 ACATTTAGGAATGGAGGGGTAC 57.209 45.455 4.39 0.00 45.56 3.34
894 903 4.116113 ACATTTAGGAATGGAGGGGTACA 58.884 43.478 0.00 0.00 45.56 2.90
895 904 4.731929 ACATTTAGGAATGGAGGGGTACAT 59.268 41.667 0.00 0.00 45.56 2.29
896 905 4.788925 TTTAGGAATGGAGGGGTACATG 57.211 45.455 0.00 0.00 0.00 3.21
897 906 1.522900 AGGAATGGAGGGGTACATGG 58.477 55.000 0.00 0.00 0.00 3.66
898 907 1.010793 AGGAATGGAGGGGTACATGGA 59.989 52.381 0.00 0.00 0.00 3.41
899 908 1.850345 GGAATGGAGGGGTACATGGAA 59.150 52.381 0.00 0.00 0.00 3.53
900 909 2.447047 GGAATGGAGGGGTACATGGAAT 59.553 50.000 0.00 0.00 0.00 3.01
901 910 3.498661 GGAATGGAGGGGTACATGGAATC 60.499 52.174 0.00 0.00 0.00 2.52
902 911 2.278657 TGGAGGGGTACATGGAATCA 57.721 50.000 0.00 0.00 0.00 2.57
903 912 2.126882 TGGAGGGGTACATGGAATCAG 58.873 52.381 0.00 0.00 0.00 2.90
904 913 1.202818 GGAGGGGTACATGGAATCAGC 60.203 57.143 0.00 0.00 0.00 4.26
905 914 1.771255 GAGGGGTACATGGAATCAGCT 59.229 52.381 0.00 0.00 0.00 4.24
906 915 2.972713 GAGGGGTACATGGAATCAGCTA 59.027 50.000 0.00 0.00 0.00 3.32
907 916 2.975489 AGGGGTACATGGAATCAGCTAG 59.025 50.000 0.00 0.00 0.00 3.42
908 917 2.039084 GGGGTACATGGAATCAGCTAGG 59.961 54.545 0.00 0.00 0.00 3.02
909 918 2.039084 GGGTACATGGAATCAGCTAGGG 59.961 54.545 0.00 0.00 0.00 3.53
910 919 2.706190 GGTACATGGAATCAGCTAGGGT 59.294 50.000 0.00 0.00 0.00 4.34
911 920 3.136626 GGTACATGGAATCAGCTAGGGTT 59.863 47.826 0.00 0.00 0.00 4.11
912 921 3.287867 ACATGGAATCAGCTAGGGTTG 57.712 47.619 0.00 0.00 0.00 3.77
913 922 1.952296 CATGGAATCAGCTAGGGTTGC 59.048 52.381 0.00 0.00 0.00 4.17
914 923 1.289160 TGGAATCAGCTAGGGTTGCT 58.711 50.000 0.00 0.00 42.06 3.91
919 928 4.730487 AGCTAGGGTTGCTGCAAG 57.270 55.556 16.53 4.49 39.56 4.01
920 929 1.001641 AGCTAGGGTTGCTGCAAGG 60.002 57.895 16.53 5.26 39.56 3.61
921 930 1.002134 GCTAGGGTTGCTGCAAGGA 60.002 57.895 16.53 0.44 0.00 3.36
922 931 1.028868 GCTAGGGTTGCTGCAAGGAG 61.029 60.000 16.53 11.18 33.89 3.69
923 932 0.393537 CTAGGGTTGCTGCAAGGAGG 60.394 60.000 16.53 1.89 33.89 4.30
924 933 2.484287 TAGGGTTGCTGCAAGGAGGC 62.484 60.000 16.53 3.23 33.89 4.70
925 934 2.282745 GGTTGCTGCAAGGAGGCT 60.283 61.111 16.53 0.00 33.89 4.58
926 935 2.633509 GGTTGCTGCAAGGAGGCTG 61.634 63.158 16.53 0.00 33.89 4.85
978 987 2.873472 TCCTAAACGAAACGCACAACAT 59.127 40.909 0.00 0.00 0.00 2.71
1089 1102 0.461961 CCTTCTCCGGAAAGCTCGAT 59.538 55.000 5.23 0.00 0.00 3.59
1314 1327 1.220206 CACTCTCCTCCATGCGCTT 59.780 57.895 9.73 0.00 0.00 4.68
1357 1370 2.183555 CCCGTAGCCTGTTCGACC 59.816 66.667 0.00 0.00 0.00 4.79
2181 2194 3.629548 TGCTGACATTGCTGCACTA 57.370 47.368 0.00 0.00 37.73 2.74
2472 2485 5.449553 AGAATGTCCTTCCTTGAACTTTGT 58.550 37.500 0.00 0.00 34.11 2.83
2473 2486 5.893824 AGAATGTCCTTCCTTGAACTTTGTT 59.106 36.000 0.00 0.00 34.11 2.83
2474 2487 6.381133 AGAATGTCCTTCCTTGAACTTTGTTT 59.619 34.615 0.00 0.00 34.11 2.83
2475 2488 5.576447 TGTCCTTCCTTGAACTTTGTTTC 57.424 39.130 0.00 0.00 0.00 2.78
2476 2489 4.401202 TGTCCTTCCTTGAACTTTGTTTCC 59.599 41.667 0.00 0.00 0.00 3.13
2477 2490 4.401202 GTCCTTCCTTGAACTTTGTTTCCA 59.599 41.667 0.00 0.00 0.00 3.53
2478 2491 5.020132 TCCTTCCTTGAACTTTGTTTCCAA 58.980 37.500 0.00 0.00 0.00 3.53
2479 2492 5.127031 TCCTTCCTTGAACTTTGTTTCCAAG 59.873 40.000 0.00 0.00 0.00 3.61
2480 2493 5.127031 CCTTCCTTGAACTTTGTTTCCAAGA 59.873 40.000 11.13 0.28 0.00 3.02
2481 2494 5.576447 TCCTTGAACTTTGTTTCCAAGAC 57.424 39.130 11.13 0.00 0.00 3.01
3035 3048 1.427435 GCACTCTCTTGTCACAGAGC 58.573 55.000 7.62 0.00 40.00 4.09
3295 3308 9.931698 TTGTCTCCATAACTCTAACTTCCTATA 57.068 33.333 0.00 0.00 0.00 1.31
3930 3943 4.454504 ACAACATAGGCGGAGTTAACTTTG 59.545 41.667 10.02 9.14 0.00 2.77
3935 3948 2.882761 AGGCGGAGTTAACTTTGTTTCC 59.117 45.455 10.02 4.45 0.00 3.13
3941 3954 5.505159 CGGAGTTAACTTTGTTTCCAAGACC 60.505 44.000 10.02 0.49 0.00 3.85
3983 3996 3.498774 ATGGGGAATTAGTGCTGCTAG 57.501 47.619 0.00 0.00 0.00 3.42
4029 4042 7.708322 TGATACTTCTGCTCAATTGTGTAGATC 59.292 37.037 23.09 18.48 32.14 2.75
4100 4113 6.648879 TGCTTTTGGTAGAGCTTTTACAAT 57.351 33.333 10.39 0.00 39.60 2.71
4202 4215 9.586435 CTTCTTAAGGTTTTCAGTTGATTTTGT 57.414 29.630 1.85 0.00 0.00 2.83
4248 4261 3.788227 TGTAGTCATTCTGGCTTGGTT 57.212 42.857 0.00 0.00 32.64 3.67
4449 4462 0.527817 CGAGTAGGATCCACCGCAAC 60.528 60.000 15.82 2.10 44.74 4.17
4959 4972 1.596477 GCTGATCATCCTGCGGGAC 60.596 63.158 18.90 4.45 45.43 4.46
4998 5011 4.453819 CACTTCAGAGATGGTTCTTGTTCC 59.546 45.833 0.00 0.00 30.30 3.62
5139 5152 1.200760 TGATGACTGGGTGTCTGGGG 61.201 60.000 0.00 0.00 45.54 4.96
5227 5240 2.568062 TGTGGCCTTGCATTTCAATCAT 59.432 40.909 3.32 0.00 33.57 2.45
5336 5350 7.161773 ACAAGATTTTAGCTATGCATGTGTT 57.838 32.000 10.16 2.80 0.00 3.32
5386 5400 8.609483 AGGTATGATCCATGATAACTTGCTAAT 58.391 33.333 0.00 0.00 0.00 1.73
5600 5616 2.430465 CAGTACTGAAAGCAGCCATGT 58.570 47.619 18.45 0.00 46.26 3.21
5633 5649 6.567959 TGCTATGTCAGTTCAGTCAGAATAG 58.432 40.000 0.00 0.00 38.76 1.73
5673 5689 3.394674 TGTTCCATAGTCTTGCGTCAA 57.605 42.857 0.00 0.00 0.00 3.18
5686 5702 5.065218 GTCTTGCGTCAAATGGATAGTTGAT 59.935 40.000 0.00 0.00 42.13 2.57
5757 5773 3.633235 ACTAATCGAGTTGCTATCAGCG 58.367 45.455 0.00 0.00 46.26 5.18
5808 5824 2.357034 GTGTTCTCAAGGCGGCGA 60.357 61.111 12.98 0.00 0.00 5.54
5846 5862 2.224719 CCTGGATGGATCTGTGGAATCC 60.225 54.545 0.00 0.00 38.35 3.01
5870 5886 7.119699 TCCGCATTTATATTTCTGCTAATCCAG 59.880 37.037 0.00 0.00 32.48 3.86
5896 5912 8.470002 GGTTTTCTTGCTTCCAATATATTCTGT 58.530 33.333 0.00 0.00 0.00 3.41
5926 5942 3.603158 AGGTTTGTGTGGGAAAACAAC 57.397 42.857 0.00 0.00 37.89 3.32
5932 5948 1.362355 GTGGGAAAACAACGCTGGG 59.638 57.895 0.00 0.00 0.00 4.45
5947 5963 1.677217 GCTGGGAAGAGTTTCGATGCT 60.677 52.381 0.00 0.00 33.98 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 9.000486 CGGAGGAAGTAGAAAATAAGAAAAACT 58.000 33.333 0.00 0.00 0.00 2.66
26 27 8.781196 ACGGAGGAAGTAGAAAATAAGAAAAAC 58.219 33.333 0.00 0.00 0.00 2.43
27 28 8.913487 ACGGAGGAAGTAGAAAATAAGAAAAA 57.087 30.769 0.00 0.00 0.00 1.94
28 29 8.913487 AACGGAGGAAGTAGAAAATAAGAAAA 57.087 30.769 0.00 0.00 0.00 2.29
29 30 7.605309 GGAACGGAGGAAGTAGAAAATAAGAAA 59.395 37.037 0.00 0.00 0.00 2.52
30 31 7.038516 AGGAACGGAGGAAGTAGAAAATAAGAA 60.039 37.037 0.00 0.00 0.00 2.52
31 32 6.439692 AGGAACGGAGGAAGTAGAAAATAAGA 59.560 38.462 0.00 0.00 0.00 2.10
32 33 6.641474 AGGAACGGAGGAAGTAGAAAATAAG 58.359 40.000 0.00 0.00 0.00 1.73
33 34 6.616237 AGGAACGGAGGAAGTAGAAAATAA 57.384 37.500 0.00 0.00 0.00 1.40
34 35 7.722949 TTAGGAACGGAGGAAGTAGAAAATA 57.277 36.000 0.00 0.00 0.00 1.40
35 36 6.616237 TTAGGAACGGAGGAAGTAGAAAAT 57.384 37.500 0.00 0.00 0.00 1.82
36 37 6.423776 TTTAGGAACGGAGGAAGTAGAAAA 57.576 37.500 0.00 0.00 0.00 2.29
37 38 6.616237 ATTTAGGAACGGAGGAAGTAGAAA 57.384 37.500 0.00 0.00 0.00 2.52
38 39 7.909485 ATATTTAGGAACGGAGGAAGTAGAA 57.091 36.000 0.00 0.00 0.00 2.10
39 40 9.075678 CTTATATTTAGGAACGGAGGAAGTAGA 57.924 37.037 0.00 0.00 0.00 2.59
40 41 8.305317 CCTTATATTTAGGAACGGAGGAAGTAG 58.695 40.741 0.00 0.00 34.56 2.57
41 42 7.256083 GCCTTATATTTAGGAACGGAGGAAGTA 60.256 40.741 7.56 0.00 34.56 2.24
42 43 6.464039 GCCTTATATTTAGGAACGGAGGAAGT 60.464 42.308 7.56 0.00 34.56 3.01
43 44 5.932883 GCCTTATATTTAGGAACGGAGGAAG 59.067 44.000 7.56 0.00 34.56 3.46
44 45 5.221783 GGCCTTATATTTAGGAACGGAGGAA 60.222 44.000 0.00 0.00 34.56 3.36
45 46 4.285260 GGCCTTATATTTAGGAACGGAGGA 59.715 45.833 0.00 0.00 34.56 3.71
46 47 4.565028 GGGCCTTATATTTAGGAACGGAGG 60.565 50.000 0.84 0.00 34.56 4.30
47 48 4.565028 GGGGCCTTATATTTAGGAACGGAG 60.565 50.000 0.84 0.00 34.56 4.63
48 49 3.328637 GGGGCCTTATATTTAGGAACGGA 59.671 47.826 0.84 0.00 34.56 4.69
49 50 3.682696 GGGGCCTTATATTTAGGAACGG 58.317 50.000 0.84 0.00 34.56 4.44
50 51 3.244318 ACGGGGCCTTATATTTAGGAACG 60.244 47.826 0.84 9.30 34.56 3.95
51 52 4.362470 ACGGGGCCTTATATTTAGGAAC 57.638 45.455 0.84 0.84 34.56 3.62
52 53 5.104024 TCAAACGGGGCCTTATATTTAGGAA 60.104 40.000 0.84 0.00 34.56 3.36
53 54 4.412858 TCAAACGGGGCCTTATATTTAGGA 59.587 41.667 0.84 0.00 34.56 2.94
54 55 4.721132 TCAAACGGGGCCTTATATTTAGG 58.279 43.478 0.84 0.32 35.80 2.69
55 56 7.166167 ACTATCAAACGGGGCCTTATATTTAG 58.834 38.462 0.84 0.95 0.00 1.85
56 57 7.081857 ACTATCAAACGGGGCCTTATATTTA 57.918 36.000 0.84 0.00 0.00 1.40
57 58 5.948842 ACTATCAAACGGGGCCTTATATTT 58.051 37.500 0.84 0.00 0.00 1.40
58 59 5.578157 ACTATCAAACGGGGCCTTATATT 57.422 39.130 0.84 0.00 0.00 1.28
59 60 6.691255 TTACTATCAAACGGGGCCTTATAT 57.309 37.500 0.84 0.00 0.00 0.86
60 61 6.100134 ACTTTACTATCAAACGGGGCCTTATA 59.900 38.462 0.84 0.00 0.00 0.98
61 62 5.104235 ACTTTACTATCAAACGGGGCCTTAT 60.104 40.000 0.84 0.00 0.00 1.73
62 63 4.225717 ACTTTACTATCAAACGGGGCCTTA 59.774 41.667 0.84 0.00 0.00 2.69
63 64 3.009805 ACTTTACTATCAAACGGGGCCTT 59.990 43.478 0.84 0.00 0.00 4.35
64 65 2.574824 ACTTTACTATCAAACGGGGCCT 59.425 45.455 0.84 0.00 0.00 5.19
65 66 2.995283 ACTTTACTATCAAACGGGGCC 58.005 47.619 0.00 0.00 0.00 5.80
66 67 5.008316 CCAATACTTTACTATCAAACGGGGC 59.992 44.000 0.00 0.00 0.00 5.80
67 68 6.350906 TCCAATACTTTACTATCAAACGGGG 58.649 40.000 0.00 0.00 0.00 5.73
68 69 7.852971 TTCCAATACTTTACTATCAAACGGG 57.147 36.000 0.00 0.00 0.00 5.28
69 70 9.550811 GTTTTCCAATACTTTACTATCAAACGG 57.449 33.333 0.00 0.00 0.00 4.44
70 71 9.550811 GGTTTTCCAATACTTTACTATCAAACG 57.449 33.333 0.00 0.00 40.31 3.60
71 72 9.850628 GGGTTTTCCAATACTTTACTATCAAAC 57.149 33.333 0.00 0.00 42.91 2.93
72 73 9.589461 TGGGTTTTCCAATACTTTACTATCAAA 57.411 29.630 0.00 0.00 43.84 2.69
130 139 8.642908 TTCTGTATGTCAAAACTATGGTATCG 57.357 34.615 0.00 0.00 0.00 2.92
169 178 5.347342 CAAACAGGTTTGCAGTATTCACAA 58.653 37.500 11.51 0.00 42.66 3.33
172 181 3.243704 GCCAAACAGGTTTGCAGTATTCA 60.244 43.478 17.25 0.00 46.25 2.57
196 205 7.535940 GCTAATTTATGTTTTACGTGAGCAACA 59.464 33.333 0.00 0.00 34.58 3.33
197 206 7.535940 TGCTAATTTATGTTTTACGTGAGCAAC 59.464 33.333 0.00 0.00 32.49 4.17
199 208 7.135089 TGCTAATTTATGTTTTACGTGAGCA 57.865 32.000 0.00 0.00 32.96 4.26
200 209 8.614994 ATTGCTAATTTATGTTTTACGTGAGC 57.385 30.769 0.00 0.00 0.00 4.26
225 234 4.135306 TGCGTGTTTGTAACTGGGAATAA 58.865 39.130 0.00 0.00 0.00 1.40
231 240 3.663233 CGTACATGCGTGTTTGTAACTGG 60.663 47.826 18.34 0.00 39.77 4.00
237 246 1.794116 GGTACGTACATGCGTGTTTGT 59.206 47.619 26.02 17.43 45.33 2.83
250 259 1.636148 ACCAGGAAGCTTGGTACGTA 58.364 50.000 2.10 0.00 46.80 3.57
256 265 1.856265 GCAACGACCAGGAAGCTTGG 61.856 60.000 2.10 1.53 41.60 3.61
260 269 1.237285 ATGTGCAACGACCAGGAAGC 61.237 55.000 0.00 0.00 42.39 3.86
263 272 0.320683 CAGATGTGCAACGACCAGGA 60.321 55.000 0.00 0.00 42.39 3.86
267 276 0.602638 TGTCCAGATGTGCAACGACC 60.603 55.000 0.00 0.00 42.39 4.79
280 289 1.270839 ACTGTCCGATTGGTTGTCCAG 60.271 52.381 0.00 2.07 45.22 3.86
292 301 0.174617 TTATGCATGCGACTGTCCGA 59.825 50.000 14.09 0.00 0.00 4.55
293 302 1.006086 TTTATGCATGCGACTGTCCG 58.994 50.000 14.09 0.00 0.00 4.79
294 303 2.009774 AGTTTATGCATGCGACTGTCC 58.990 47.619 14.09 0.00 0.00 4.02
295 304 3.125146 TCAAGTTTATGCATGCGACTGTC 59.875 43.478 14.09 0.00 0.00 3.51
296 305 3.073678 TCAAGTTTATGCATGCGACTGT 58.926 40.909 14.09 0.00 0.00 3.55
297 306 3.745332 TCAAGTTTATGCATGCGACTG 57.255 42.857 14.09 9.04 0.00 3.51
298 307 4.439153 CCATTCAAGTTTATGCATGCGACT 60.439 41.667 14.09 11.20 0.00 4.18
299 308 3.792956 CCATTCAAGTTTATGCATGCGAC 59.207 43.478 14.09 9.04 0.00 5.19
300 309 3.734597 GCCATTCAAGTTTATGCATGCGA 60.735 43.478 14.09 0.00 0.00 5.10
302 311 2.867975 GGCCATTCAAGTTTATGCATGC 59.132 45.455 11.82 11.82 0.00 4.06
303 312 4.126208 TGGCCATTCAAGTTTATGCATG 57.874 40.909 10.16 0.00 0.00 4.06
304 313 4.699637 CATGGCCATTCAAGTTTATGCAT 58.300 39.130 17.92 3.79 0.00 3.96
305 314 3.679361 GCATGGCCATTCAAGTTTATGCA 60.679 43.478 17.92 0.00 39.41 3.96
306 315 2.867975 GCATGGCCATTCAAGTTTATGC 59.132 45.455 17.92 10.46 33.83 3.14
307 316 3.866910 GTGCATGGCCATTCAAGTTTATG 59.133 43.478 20.11 5.43 0.00 1.90
308 317 3.514706 TGTGCATGGCCATTCAAGTTTAT 59.485 39.130 20.11 0.00 0.00 1.40
309 318 2.896044 TGTGCATGGCCATTCAAGTTTA 59.104 40.909 20.11 1.95 0.00 2.01
310 319 1.693062 TGTGCATGGCCATTCAAGTTT 59.307 42.857 20.11 0.00 0.00 2.66
319 328 0.966875 CCTAGCTTTGTGCATGGCCA 60.967 55.000 8.56 8.56 45.94 5.36
320 329 0.967380 ACCTAGCTTTGTGCATGGCC 60.967 55.000 0.00 0.00 45.94 5.36
335 344 3.008340 ACCTCCCCTTTTGGTAACCTA 57.992 47.619 0.00 0.00 38.10 3.08
338 347 4.077108 CAACTACCTCCCCTTTTGGTAAC 58.923 47.826 0.00 0.00 36.11 2.50
355 364 4.560108 GCTTCGTTCCTGGTAGTTCAACTA 60.560 45.833 0.00 0.00 0.00 2.24
384 393 3.555324 TTCCAGCCCACACGCAGA 61.555 61.111 0.00 0.00 0.00 4.26
389 398 1.961277 CGAGTGTTCCAGCCCACAC 60.961 63.158 0.00 0.00 43.17 3.82
390 399 2.425592 CGAGTGTTCCAGCCCACA 59.574 61.111 0.00 0.00 33.99 4.17
394 403 3.628646 ATGGCCGAGTGTTCCAGCC 62.629 63.158 0.00 0.00 38.91 4.85
395 404 2.045926 ATGGCCGAGTGTTCCAGC 60.046 61.111 0.00 0.00 32.78 4.85
396 405 0.036010 AAGATGGCCGAGTGTTCCAG 60.036 55.000 0.00 0.00 32.78 3.86
397 406 0.036388 GAAGATGGCCGAGTGTTCCA 60.036 55.000 0.00 0.00 0.00 3.53
398 407 0.036388 TGAAGATGGCCGAGTGTTCC 60.036 55.000 0.00 0.00 0.00 3.62
399 408 1.363744 CTGAAGATGGCCGAGTGTTC 58.636 55.000 0.00 1.79 0.00 3.18
422 431 4.351938 TCGTGACCCTTGACGGCG 62.352 66.667 4.80 4.80 36.23 6.46
429 438 2.522436 TGGACCGTCGTGACCCTT 60.522 61.111 0.00 0.00 0.00 3.95
438 447 0.391263 GGATGTTCCTGTGGACCGTC 60.391 60.000 0.00 0.00 30.70 4.79
439 448 1.125093 TGGATGTTCCTGTGGACCGT 61.125 55.000 0.00 0.00 37.46 4.83
440 449 0.673644 GTGGATGTTCCTGTGGACCG 60.674 60.000 0.00 0.00 37.46 4.79
441 450 0.673644 CGTGGATGTTCCTGTGGACC 60.674 60.000 0.00 0.00 37.46 4.46
442 451 0.320374 TCGTGGATGTTCCTGTGGAC 59.680 55.000 0.00 0.00 37.46 4.02
443 452 0.320374 GTCGTGGATGTTCCTGTGGA 59.680 55.000 0.00 0.00 37.46 4.02
444 453 1.014044 CGTCGTGGATGTTCCTGTGG 61.014 60.000 0.00 0.00 37.46 4.17
448 457 1.292223 CACCGTCGTGGATGTTCCT 59.708 57.895 3.47 0.00 42.00 3.36
461 470 2.430244 GTGCATCGTCGACACCGT 60.430 61.111 17.16 0.00 37.05 4.83
465 474 2.430075 CACGGTGCATCGTCGACA 60.430 61.111 24.69 3.13 41.86 4.35
487 496 4.867047 ACTCGATACACTCAATTCAGCTTG 59.133 41.667 0.00 0.00 0.00 4.01
518 527 1.679153 GTTTGCTTCCTCGTTCCCAAA 59.321 47.619 0.00 0.00 0.00 3.28
539 548 1.238439 CACAGTGAGAAAACGGGCAT 58.762 50.000 0.00 0.00 0.00 4.40
575 584 6.677187 GCATAATAAAAACAACCTCGGACCTC 60.677 42.308 0.00 0.00 0.00 3.85
581 590 7.072177 TCTCTGCATAATAAAAACAACCTCG 57.928 36.000 0.00 0.00 0.00 4.63
611 620 9.561069 AATACTAGAGTATTTGCCAAACCATAG 57.439 33.333 8.79 0.00 45.90 2.23
626 635 9.841295 AAAAACTGTGGTTTCAATACTAGAGTA 57.159 29.630 0.00 0.00 43.90 2.59
638 647 5.345702 GTTGGGTCTAAAAACTGTGGTTTC 58.654 41.667 0.00 0.00 43.90 2.78
643 652 4.993029 TTGGTTGGGTCTAAAAACTGTG 57.007 40.909 0.00 0.00 0.00 3.66
657 666 0.823460 ACAACAGGCTGTTTGGTTGG 59.177 50.000 29.32 18.96 43.61 3.77
658 667 3.791973 TTACAACAGGCTGTTTGGTTG 57.208 42.857 29.32 20.68 38.77 3.77
660 669 6.472686 TTTATTTACAACAGGCTGTTTGGT 57.527 33.333 29.32 25.16 38.77 3.67
724 733 9.694137 CCCCGTTTGATAACAAAGTATTTTTAA 57.306 29.630 0.00 0.00 44.97 1.52
738 747 2.841881 AGACTTAGGCCCCGTTTGATAA 59.158 45.455 0.00 0.00 0.00 1.75
741 750 1.061546 AAGACTTAGGCCCCGTTTGA 58.938 50.000 0.00 0.00 0.00 2.69
746 755 5.456548 TTTTTAAAAAGACTTAGGCCCCG 57.543 39.130 9.31 0.00 0.00 5.73
859 868 9.976511 CCATTCCTAAATGTACGTCTTTCTATA 57.023 33.333 0.00 0.00 40.63 1.31
860 869 8.701895 TCCATTCCTAAATGTACGTCTTTCTAT 58.298 33.333 0.00 0.00 40.63 1.98
861 870 8.070034 TCCATTCCTAAATGTACGTCTTTCTA 57.930 34.615 0.00 0.00 40.63 2.10
862 871 6.942976 TCCATTCCTAAATGTACGTCTTTCT 58.057 36.000 0.00 0.00 40.63 2.52
863 872 6.258068 CCTCCATTCCTAAATGTACGTCTTTC 59.742 42.308 0.00 0.00 40.63 2.62
864 873 6.113411 CCTCCATTCCTAAATGTACGTCTTT 58.887 40.000 0.00 0.00 40.63 2.52
865 874 5.396436 CCCTCCATTCCTAAATGTACGTCTT 60.396 44.000 0.00 0.00 40.63 3.01
866 875 4.101119 CCCTCCATTCCTAAATGTACGTCT 59.899 45.833 0.00 0.00 40.63 4.18
867 876 4.377897 CCCTCCATTCCTAAATGTACGTC 58.622 47.826 0.00 0.00 40.63 4.34
868 877 3.135895 CCCCTCCATTCCTAAATGTACGT 59.864 47.826 0.00 0.00 40.63 3.57
869 878 3.135895 ACCCCTCCATTCCTAAATGTACG 59.864 47.826 0.00 0.00 40.63 3.67
870 879 4.790718 ACCCCTCCATTCCTAAATGTAC 57.209 45.455 0.00 0.00 40.63 2.90
871 880 5.290335 TGTACCCCTCCATTCCTAAATGTA 58.710 41.667 0.00 0.00 40.63 2.29
872 881 4.116113 TGTACCCCTCCATTCCTAAATGT 58.884 43.478 0.00 0.00 40.63 2.71
873 882 4.788925 TGTACCCCTCCATTCCTAAATG 57.211 45.455 0.00 0.00 41.69 2.32
874 883 4.106341 CCATGTACCCCTCCATTCCTAAAT 59.894 45.833 0.00 0.00 0.00 1.40
875 884 3.461831 CCATGTACCCCTCCATTCCTAAA 59.538 47.826 0.00 0.00 0.00 1.85
876 885 3.053077 CCATGTACCCCTCCATTCCTAA 58.947 50.000 0.00 0.00 0.00 2.69
877 886 2.251605 TCCATGTACCCCTCCATTCCTA 59.748 50.000 0.00 0.00 0.00 2.94
878 887 1.010793 TCCATGTACCCCTCCATTCCT 59.989 52.381 0.00 0.00 0.00 3.36
879 888 1.518367 TCCATGTACCCCTCCATTCC 58.482 55.000 0.00 0.00 0.00 3.01
880 889 3.138283 TGATTCCATGTACCCCTCCATTC 59.862 47.826 0.00 0.00 0.00 2.67
881 890 3.130450 TGATTCCATGTACCCCTCCATT 58.870 45.455 0.00 0.00 0.00 3.16
882 891 2.713167 CTGATTCCATGTACCCCTCCAT 59.287 50.000 0.00 0.00 0.00 3.41
883 892 2.126882 CTGATTCCATGTACCCCTCCA 58.873 52.381 0.00 0.00 0.00 3.86
884 893 1.202818 GCTGATTCCATGTACCCCTCC 60.203 57.143 0.00 0.00 0.00 4.30
885 894 1.771255 AGCTGATTCCATGTACCCCTC 59.229 52.381 0.00 0.00 0.00 4.30
886 895 1.898863 AGCTGATTCCATGTACCCCT 58.101 50.000 0.00 0.00 0.00 4.79
887 896 2.039084 CCTAGCTGATTCCATGTACCCC 59.961 54.545 0.00 0.00 0.00 4.95
888 897 2.039084 CCCTAGCTGATTCCATGTACCC 59.961 54.545 0.00 0.00 0.00 3.69
889 898 2.706190 ACCCTAGCTGATTCCATGTACC 59.294 50.000 0.00 0.00 0.00 3.34
890 899 4.130118 CAACCCTAGCTGATTCCATGTAC 58.870 47.826 0.00 0.00 0.00 2.90
891 900 3.433598 GCAACCCTAGCTGATTCCATGTA 60.434 47.826 0.00 0.00 0.00 2.29
892 901 2.684927 GCAACCCTAGCTGATTCCATGT 60.685 50.000 0.00 0.00 0.00 3.21
893 902 1.952296 GCAACCCTAGCTGATTCCATG 59.048 52.381 0.00 0.00 0.00 3.66
894 903 1.849039 AGCAACCCTAGCTGATTCCAT 59.151 47.619 0.00 0.00 41.61 3.41
895 904 1.289160 AGCAACCCTAGCTGATTCCA 58.711 50.000 0.00 0.00 41.61 3.53
902 911 1.001641 CCTTGCAGCAACCCTAGCT 60.002 57.895 2.83 0.00 44.62 3.32
903 912 1.002134 TCCTTGCAGCAACCCTAGC 60.002 57.895 2.83 0.00 0.00 3.42
904 913 0.393537 CCTCCTTGCAGCAACCCTAG 60.394 60.000 2.83 0.00 0.00 3.02
905 914 1.685224 CCTCCTTGCAGCAACCCTA 59.315 57.895 2.83 0.00 0.00 3.53
906 915 2.437897 CCTCCTTGCAGCAACCCT 59.562 61.111 2.83 0.00 0.00 4.34
907 916 3.376918 GCCTCCTTGCAGCAACCC 61.377 66.667 2.83 0.00 0.00 4.11
908 917 2.282745 AGCCTCCTTGCAGCAACC 60.283 61.111 2.83 0.00 0.00 3.77
909 918 2.960170 CAGCCTCCTTGCAGCAAC 59.040 61.111 2.83 0.00 0.00 4.17
910 919 2.987547 GCAGCCTCCTTGCAGCAA 60.988 61.111 7.81 7.81 42.63 3.91
915 924 1.755179 TCTAAATGCAGCCTCCTTGC 58.245 50.000 0.00 0.00 41.86 4.01
916 925 2.686915 CCTTCTAAATGCAGCCTCCTTG 59.313 50.000 0.00 0.00 0.00 3.61
917 926 2.357569 CCCTTCTAAATGCAGCCTCCTT 60.358 50.000 0.00 0.00 0.00 3.36
918 927 1.213926 CCCTTCTAAATGCAGCCTCCT 59.786 52.381 0.00 0.00 0.00 3.69
919 928 1.064389 ACCCTTCTAAATGCAGCCTCC 60.064 52.381 0.00 0.00 0.00 4.30
920 929 2.092699 AGACCCTTCTAAATGCAGCCTC 60.093 50.000 0.00 0.00 0.00 4.70
921 930 1.918957 AGACCCTTCTAAATGCAGCCT 59.081 47.619 0.00 0.00 0.00 4.58
922 931 2.019984 CAGACCCTTCTAAATGCAGCC 58.980 52.381 0.00 0.00 0.00 4.85
923 932 1.403323 GCAGACCCTTCTAAATGCAGC 59.597 52.381 0.00 0.00 0.00 5.25
924 933 2.715046 TGCAGACCCTTCTAAATGCAG 58.285 47.619 0.00 0.00 0.00 4.41
925 934 2.877097 TGCAGACCCTTCTAAATGCA 57.123 45.000 0.00 0.00 0.00 3.96
926 935 3.019564 ACATGCAGACCCTTCTAAATGC 58.980 45.455 0.00 0.00 31.34 3.56
927 936 3.181493 GCACATGCAGACCCTTCTAAATG 60.181 47.826 0.00 0.00 41.59 2.32
928 937 3.019564 GCACATGCAGACCCTTCTAAAT 58.980 45.455 0.00 0.00 41.59 1.40
929 938 2.436417 GCACATGCAGACCCTTCTAAA 58.564 47.619 0.00 0.00 41.59 1.85
930 939 1.675714 CGCACATGCAGACCCTTCTAA 60.676 52.381 4.49 0.00 42.21 2.10
996 1009 2.103042 GCGCGAAGGAAGCATCAGT 61.103 57.895 12.10 0.00 34.19 3.41
998 1011 2.819595 GGCGCGAAGGAAGCATCA 60.820 61.111 12.10 0.00 34.19 3.07
1005 1018 4.207281 CGGAGATGGCGCGAAGGA 62.207 66.667 12.10 0.00 0.00 3.36
1073 1086 1.141881 GCATCGAGCTTTCCGGAGA 59.858 57.895 3.34 0.00 41.15 3.71
1314 1327 0.611896 TGAGGGACGATGAGACTGCA 60.612 55.000 0.00 0.00 0.00 4.41
1357 1370 0.804989 GAGTCCTTCACCGGCATTTG 59.195 55.000 0.00 0.00 0.00 2.32
1632 1645 4.164796 ACATCTCTTTGTGGCATCCTATCA 59.835 41.667 0.00 0.00 0.00 2.15
2181 2194 0.959372 GCAGCTGCATTCCACACTCT 60.959 55.000 33.36 0.00 41.59 3.24
2472 2485 4.039245 TGTTGTTGTTGTTGGTCTTGGAAA 59.961 37.500 0.00 0.00 0.00 3.13
2473 2486 3.574396 TGTTGTTGTTGTTGGTCTTGGAA 59.426 39.130 0.00 0.00 0.00 3.53
2474 2487 3.157881 TGTTGTTGTTGTTGGTCTTGGA 58.842 40.909 0.00 0.00 0.00 3.53
2475 2488 3.584406 TGTTGTTGTTGTTGGTCTTGG 57.416 42.857 0.00 0.00 0.00 3.61
2476 2489 4.302455 TGTTGTTGTTGTTGTTGGTCTTG 58.698 39.130 0.00 0.00 0.00 3.02
2477 2490 4.592485 TGTTGTTGTTGTTGTTGGTCTT 57.408 36.364 0.00 0.00 0.00 3.01
2478 2491 4.202161 TGTTGTTGTTGTTGTTGTTGGTCT 60.202 37.500 0.00 0.00 0.00 3.85
2479 2492 4.051922 TGTTGTTGTTGTTGTTGTTGGTC 58.948 39.130 0.00 0.00 0.00 4.02
2480 2493 4.060038 TGTTGTTGTTGTTGTTGTTGGT 57.940 36.364 0.00 0.00 0.00 3.67
2481 2494 4.271049 TGTTGTTGTTGTTGTTGTTGTTGG 59.729 37.500 0.00 0.00 0.00 3.77
3295 3308 5.222068 TGGAGTGGTAGACGTCAGGATATAT 60.222 44.000 19.50 0.00 0.00 0.86
3298 3311 2.240414 TGGAGTGGTAGACGTCAGGATA 59.760 50.000 19.50 0.00 0.00 2.59
3299 3312 1.005569 TGGAGTGGTAGACGTCAGGAT 59.994 52.381 19.50 0.00 0.00 3.24
3930 3943 5.017294 TTCCAACAAATGGTCTTGGAAAC 57.983 39.130 11.95 0.00 46.41 2.78
3941 3954 6.073112 CCATAAAGCACCTTTTCCAACAAATG 60.073 38.462 0.00 0.00 35.21 2.32
3983 3996 9.640963 AGTATCATTATAGACGAATTGGTTAGC 57.359 33.333 0.00 0.00 0.00 3.09
4100 4113 6.591750 AGGTCGATTCTCTGAAGACTTTTA 57.408 37.500 0.00 0.00 32.86 1.52
4202 4215 3.135712 TGCAAGTACTCCAACCTGAAAGA 59.864 43.478 0.00 0.00 34.07 2.52
4449 4462 1.737363 GCACTCTTGCCTAGTTCGGAG 60.737 57.143 0.00 0.00 43.66 4.63
4959 4972 2.457366 AGTGGTGAAAGCGGTTAGAG 57.543 50.000 0.00 0.00 36.92 2.43
4998 5011 3.329386 CAGTCACCAGTAATCACCACAG 58.671 50.000 0.00 0.00 0.00 3.66
5111 5124 1.561542 ACCCAGTCATCACAATCCCTC 59.438 52.381 0.00 0.00 0.00 4.30
5227 5240 0.325933 CCTTCCCATCTCAGCACACA 59.674 55.000 0.00 0.00 0.00 3.72
5336 5350 1.566703 TGTCCAAAGTCCTTCCAACCA 59.433 47.619 0.00 0.00 0.00 3.67
5386 5400 3.055675 ACCTAAACTGGCATGTTACGCTA 60.056 43.478 0.00 0.00 0.00 4.26
5497 5512 6.952935 GAACACTTGTAGTTCTTGATCGAT 57.047 37.500 0.00 0.00 41.56 3.59
5633 5649 1.635817 TACCCTTCTCCTGCCATGGC 61.636 60.000 30.54 30.54 42.35 4.40
5673 5689 4.891168 TCAGCAATGCATCAACTATCCATT 59.109 37.500 8.35 0.00 0.00 3.16
5808 5824 1.822990 CAGGCATGAACTGAAGGCAAT 59.177 47.619 11.21 0.00 38.20 3.56
5846 5862 7.094634 ACCTGGATTAGCAGAAATATAAATGCG 60.095 37.037 0.00 0.00 43.41 4.73
5870 5886 8.470002 ACAGAATATATTGGAAGCAAGAAAACC 58.530 33.333 1.78 0.00 0.00 3.27
5896 5912 3.636300 CCCACACAAACCTTCTGATTTGA 59.364 43.478 8.71 0.00 38.82 2.69
5911 5927 0.453793 CAGCGTTGTTTTCCCACACA 59.546 50.000 0.00 0.00 0.00 3.72
5926 5942 1.002366 CATCGAAACTCTTCCCAGCG 58.998 55.000 0.00 0.00 0.00 5.18
5964 5980 9.502091 TTTACTGTAGATAAACATCTTGCAACT 57.498 29.630 0.00 0.00 32.36 3.16
5980 5996 5.176774 CGTGCATGTTTCTGTTTACTGTAGA 59.823 40.000 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.