Multiple sequence alignment - TraesCS5B01G182200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G182200 chr5B 100.000 4103 0 0 1 4103 332204001 332199899 0.000000e+00 7577
1 TraesCS5B01G182200 chr5B 83.395 542 56 18 1596 2123 332201888 332201367 4.800000e-129 472
2 TraesCS5B01G182200 chr5B 83.395 542 56 18 2114 2635 332202406 332201879 4.800000e-129 472
3 TraesCS5B01G182200 chr5D 96.129 1860 42 14 1803 3649 291500309 291498467 0.000000e+00 3009
4 TraesCS5B01G182200 chr5D 92.726 1306 46 18 493 1770 291501595 291500311 0.000000e+00 1840
5 TraesCS5B01G182200 chr5D 81.636 550 58 23 1596 2123 291499997 291499469 2.280000e-112 416
6 TraesCS5B01G182200 chr5D 79.813 535 54 30 2114 2635 291500481 291499988 1.410000e-89 340
7 TraesCS5B01G182200 chr5D 89.450 218 17 2 1 216 291501815 291501602 1.880000e-68 270
8 TraesCS5B01G182200 chr5D 83.566 286 19 7 3843 4103 291498266 291497984 4.100000e-60 243
9 TraesCS5B01G182200 chr5A 86.899 2038 121 45 491 2481 383883673 383881735 0.000000e+00 2150
10 TraesCS5B01G182200 chr5A 94.234 1162 52 8 2490 3649 383881695 383880547 0.000000e+00 1760
11 TraesCS5B01G182200 chr5A 87.734 481 31 12 3649 4103 383880465 383879987 1.680000e-148 536
12 TraesCS5B01G182200 chr5A 82.987 529 51 20 2114 2635 383882580 383882084 3.760000e-120 442
13 TraesCS5B01G182200 chr5A 85.675 363 30 14 1596 1958 383882093 383881753 3.010000e-96 363
14 TraesCS5B01G182200 chr5A 87.850 214 24 1 3 214 383883893 383883680 2.450000e-62 250
15 TraesCS5B01G182200 chr1B 92.857 224 16 0 1001 1224 652458942 652458719 3.960000e-85 326
16 TraesCS5B01G182200 chr1D 92.760 221 16 0 1001 1221 470076701 470076481 1.840000e-83 320
17 TraesCS5B01G182200 chr1A 92.070 227 18 0 1001 1227 563685866 563685640 1.840000e-83 320
18 TraesCS5B01G182200 chr7D 92.344 209 16 0 1007 1215 477072302 477072510 8.620000e-77 298
19 TraesCS5B01G182200 chr7B 92.344 209 16 0 1007 1215 501508511 501508719 8.620000e-77 298
20 TraesCS5B01G182200 chr7A 91.628 215 18 0 1007 1221 518809679 518809465 8.620000e-77 298
21 TraesCS5B01G182200 chr3A 89.862 217 22 0 1004 1220 518630225 518630441 3.120000e-71 279


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G182200 chr5B 332199899 332204001 4102 True 2840.333333 7577 88.930000 1 4103 3 chr5B.!!$R1 4102
1 TraesCS5B01G182200 chr5D 291497984 291501815 3831 True 1019.666667 3009 87.220000 1 4103 6 chr5D.!!$R1 4102
2 TraesCS5B01G182200 chr5A 383879987 383883893 3906 True 916.833333 2150 87.563167 3 4103 6 chr5A.!!$R1 4100

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
442 445 0.040781 AACAATTTTCACGACCGCCG 60.041 50.0 0.00 0.0 45.44 6.46 F
1791 1849 0.109132 GGCATGCAAGCACCTTGTAC 60.109 55.0 21.36 0.0 42.77 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2060 2122 0.249031 GCTGGTGAAACTGGCAACAC 60.249 55.0 0.0 0.0 46.17 3.32 R
3403 3500 1.051812 ATGAACCATAGCTCCCTCCG 58.948 55.0 0.0 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 2.046285 CCTTGGTCACCATTCCGGC 61.046 63.158 0.00 0.00 39.03 6.13
74 75 4.329545 ACCATTCCGGCGCAGTGT 62.330 61.111 10.83 0.00 39.03 3.55
130 131 2.047655 GGCCATTGTGACGACGGA 60.048 61.111 0.00 0.00 0.00 4.69
151 152 0.752054 GAGCTGGGATGGTCAGAGAG 59.248 60.000 0.00 0.00 34.36 3.20
159 160 2.392662 GATGGTCAGAGAGGGTGATCA 58.607 52.381 0.00 0.00 39.36 2.92
162 163 2.031120 GGTCAGAGAGGGTGATCAGAG 58.969 57.143 0.00 0.00 0.00 3.35
177 178 0.845102 CAGAGGGGTAGGGTTTGGGT 60.845 60.000 0.00 0.00 0.00 4.51
201 204 1.134729 TGTCGGTCGGTTAAATAGCCC 60.135 52.381 0.00 0.00 0.00 5.19
227 230 3.436001 CGGAGCGTCAGGTTAATGT 57.564 52.632 0.00 0.00 0.00 2.71
228 231 0.999406 CGGAGCGTCAGGTTAATGTG 59.001 55.000 0.00 0.00 0.00 3.21
229 232 1.671850 CGGAGCGTCAGGTTAATGTGT 60.672 52.381 0.00 0.00 0.00 3.72
230 233 1.732259 GGAGCGTCAGGTTAATGTGTG 59.268 52.381 0.00 0.00 0.00 3.82
231 234 2.413837 GAGCGTCAGGTTAATGTGTGT 58.586 47.619 0.00 0.00 0.00 3.72
232 235 2.143122 AGCGTCAGGTTAATGTGTGTG 58.857 47.619 0.00 0.00 0.00 3.82
233 236 1.196808 GCGTCAGGTTAATGTGTGTGG 59.803 52.381 0.00 0.00 0.00 4.17
234 237 2.489971 CGTCAGGTTAATGTGTGTGGT 58.510 47.619 0.00 0.00 0.00 4.16
235 238 2.875933 CGTCAGGTTAATGTGTGTGGTT 59.124 45.455 0.00 0.00 0.00 3.67
236 239 3.314080 CGTCAGGTTAATGTGTGTGGTTT 59.686 43.478 0.00 0.00 0.00 3.27
237 240 4.606961 GTCAGGTTAATGTGTGTGGTTTG 58.393 43.478 0.00 0.00 0.00 2.93
238 241 4.336993 GTCAGGTTAATGTGTGTGGTTTGA 59.663 41.667 0.00 0.00 0.00 2.69
239 242 4.578516 TCAGGTTAATGTGTGTGGTTTGAG 59.421 41.667 0.00 0.00 0.00 3.02
240 243 4.338118 CAGGTTAATGTGTGTGGTTTGAGT 59.662 41.667 0.00 0.00 0.00 3.41
241 244 5.529430 CAGGTTAATGTGTGTGGTTTGAGTA 59.471 40.000 0.00 0.00 0.00 2.59
242 245 5.763204 AGGTTAATGTGTGTGGTTTGAGTAG 59.237 40.000 0.00 0.00 0.00 2.57
243 246 5.048991 GGTTAATGTGTGTGGTTTGAGTAGG 60.049 44.000 0.00 0.00 0.00 3.18
244 247 1.961793 TGTGTGTGGTTTGAGTAGGC 58.038 50.000 0.00 0.00 0.00 3.93
245 248 1.488812 TGTGTGTGGTTTGAGTAGGCT 59.511 47.619 0.00 0.00 0.00 4.58
246 249 2.092646 TGTGTGTGGTTTGAGTAGGCTT 60.093 45.455 0.00 0.00 0.00 4.35
247 250 2.949644 GTGTGTGGTTTGAGTAGGCTTT 59.050 45.455 0.00 0.00 0.00 3.51
248 251 3.380320 GTGTGTGGTTTGAGTAGGCTTTT 59.620 43.478 0.00 0.00 0.00 2.27
249 252 3.630312 TGTGTGGTTTGAGTAGGCTTTTC 59.370 43.478 0.00 0.00 0.00 2.29
250 253 2.875933 TGTGGTTTGAGTAGGCTTTTCG 59.124 45.455 0.00 0.00 0.00 3.46
251 254 2.876550 GTGGTTTGAGTAGGCTTTTCGT 59.123 45.455 0.00 0.00 0.00 3.85
252 255 3.314357 GTGGTTTGAGTAGGCTTTTCGTT 59.686 43.478 0.00 0.00 0.00 3.85
253 256 3.949113 TGGTTTGAGTAGGCTTTTCGTTT 59.051 39.130 0.00 0.00 0.00 3.60
254 257 4.201970 TGGTTTGAGTAGGCTTTTCGTTTG 60.202 41.667 0.00 0.00 0.00 2.93
255 258 3.619233 TTGAGTAGGCTTTTCGTTTGC 57.381 42.857 0.00 0.00 0.00 3.68
256 259 1.877443 TGAGTAGGCTTTTCGTTTGCC 59.123 47.619 0.00 0.00 46.42 4.52
259 262 3.916439 GGCTTTTCGTTTGCCGTG 58.084 55.556 0.00 0.00 37.11 4.94
260 263 2.300066 GGCTTTTCGTTTGCCGTGC 61.300 57.895 0.00 0.00 37.11 5.34
261 264 2.300066 GCTTTTCGTTTGCCGTGCC 61.300 57.895 0.00 0.00 37.94 5.01
262 265 2.008697 CTTTTCGTTTGCCGTGCCG 61.009 57.895 0.00 0.00 37.94 5.69
263 266 2.655952 CTTTTCGTTTGCCGTGCCGT 62.656 55.000 0.00 0.00 37.94 5.68
264 267 2.267681 TTTTCGTTTGCCGTGCCGTT 62.268 50.000 0.00 0.00 37.94 4.44
265 268 2.921538 TTTCGTTTGCCGTGCCGTTG 62.922 55.000 0.00 0.00 37.94 4.10
266 269 4.244802 CGTTTGCCGTGCCGTTGT 62.245 61.111 0.00 0.00 0.00 3.32
267 270 2.653766 GTTTGCCGTGCCGTTGTG 60.654 61.111 0.00 0.00 0.00 3.33
268 271 2.824489 TTTGCCGTGCCGTTGTGA 60.824 55.556 0.00 0.00 0.00 3.58
269 272 2.407428 TTTGCCGTGCCGTTGTGAA 61.407 52.632 0.00 0.00 0.00 3.18
270 273 1.729470 TTTGCCGTGCCGTTGTGAAT 61.729 50.000 0.00 0.00 0.00 2.57
271 274 2.126888 GCCGTGCCGTTGTGAATG 60.127 61.111 0.00 0.00 0.00 2.67
272 275 2.126888 CCGTGCCGTTGTGAATGC 60.127 61.111 0.00 0.00 0.00 3.56
273 276 2.499520 CGTGCCGTTGTGAATGCG 60.500 61.111 0.00 0.00 0.00 4.73
277 280 2.126888 CCGTTGTGAATGCGGCAC 60.127 61.111 4.03 0.00 38.99 5.01
293 296 3.669686 ACGGAGAGTGAGTGGACG 58.330 61.111 0.00 0.00 0.00 4.79
294 297 1.228184 ACGGAGAGTGAGTGGACGT 60.228 57.895 0.00 0.00 0.00 4.34
295 298 1.210413 CGGAGAGTGAGTGGACGTG 59.790 63.158 0.00 0.00 0.00 4.49
296 299 1.080434 GGAGAGTGAGTGGACGTGC 60.080 63.158 0.00 0.00 0.00 5.34
297 300 1.442857 GAGAGTGAGTGGACGTGCG 60.443 63.158 1.60 0.00 0.00 5.34
298 301 2.430921 GAGTGAGTGGACGTGCGG 60.431 66.667 1.60 0.00 0.00 5.69
299 302 2.910479 AGTGAGTGGACGTGCGGA 60.910 61.111 1.60 0.00 0.00 5.54
300 303 2.028484 GTGAGTGGACGTGCGGAA 59.972 61.111 1.60 0.00 0.00 4.30
301 304 1.593209 GTGAGTGGACGTGCGGAAA 60.593 57.895 1.60 0.00 0.00 3.13
302 305 1.300620 TGAGTGGACGTGCGGAAAG 60.301 57.895 1.60 0.00 0.00 2.62
303 306 1.300697 GAGTGGACGTGCGGAAAGT 60.301 57.895 1.60 0.00 0.00 2.66
304 307 1.557443 GAGTGGACGTGCGGAAAGTG 61.557 60.000 1.60 0.00 0.00 3.16
305 308 1.885850 GTGGACGTGCGGAAAGTGT 60.886 57.895 1.60 0.00 0.00 3.55
306 309 1.885388 TGGACGTGCGGAAAGTGTG 60.885 57.895 1.60 0.00 0.00 3.82
307 310 2.248431 GACGTGCGGAAAGTGTGC 59.752 61.111 0.00 0.00 0.00 4.57
308 311 3.558282 GACGTGCGGAAAGTGTGCG 62.558 63.158 0.00 0.00 45.20 5.34
309 312 3.636043 CGTGCGGAAAGTGTGCGT 61.636 61.111 0.00 0.00 44.08 5.24
310 313 2.713154 GTGCGGAAAGTGTGCGTT 59.287 55.556 0.00 0.00 44.08 4.84
311 314 1.063488 GTGCGGAAAGTGTGCGTTT 59.937 52.632 0.00 0.00 44.08 3.60
312 315 0.524604 GTGCGGAAAGTGTGCGTTTT 60.525 50.000 0.00 0.00 44.08 2.43
313 316 0.171455 TGCGGAAAGTGTGCGTTTTT 59.829 45.000 0.00 0.00 44.08 1.94
314 317 0.570272 GCGGAAAGTGTGCGTTTTTG 59.430 50.000 0.00 0.00 44.08 2.44
315 318 1.196200 CGGAAAGTGTGCGTTTTTGG 58.804 50.000 0.00 0.00 36.12 3.28
316 319 1.468395 CGGAAAGTGTGCGTTTTTGGT 60.468 47.619 0.00 0.00 36.12 3.67
317 320 1.923864 GGAAAGTGTGCGTTTTTGGTG 59.076 47.619 0.00 0.00 0.00 4.17
318 321 1.923864 GAAAGTGTGCGTTTTTGGTGG 59.076 47.619 0.00 0.00 0.00 4.61
319 322 1.178276 AAGTGTGCGTTTTTGGTGGA 58.822 45.000 0.00 0.00 0.00 4.02
320 323 1.398692 AGTGTGCGTTTTTGGTGGAT 58.601 45.000 0.00 0.00 0.00 3.41
321 324 1.754226 AGTGTGCGTTTTTGGTGGATT 59.246 42.857 0.00 0.00 0.00 3.01
322 325 2.124122 GTGTGCGTTTTTGGTGGATTC 58.876 47.619 0.00 0.00 0.00 2.52
323 326 1.268794 TGTGCGTTTTTGGTGGATTCG 60.269 47.619 0.00 0.00 0.00 3.34
324 327 1.002251 GTGCGTTTTTGGTGGATTCGA 60.002 47.619 0.00 0.00 0.00 3.71
325 328 1.265635 TGCGTTTTTGGTGGATTCGAG 59.734 47.619 0.00 0.00 0.00 4.04
326 329 1.265905 GCGTTTTTGGTGGATTCGAGT 59.734 47.619 0.00 0.00 0.00 4.18
327 330 2.287368 GCGTTTTTGGTGGATTCGAGTT 60.287 45.455 0.00 0.00 0.00 3.01
328 331 3.296628 CGTTTTTGGTGGATTCGAGTTG 58.703 45.455 0.00 0.00 0.00 3.16
329 332 3.242936 CGTTTTTGGTGGATTCGAGTTGT 60.243 43.478 0.00 0.00 0.00 3.32
330 333 4.678622 GTTTTTGGTGGATTCGAGTTGTT 58.321 39.130 0.00 0.00 0.00 2.83
331 334 3.980646 TTTGGTGGATTCGAGTTGTTG 57.019 42.857 0.00 0.00 0.00 3.33
332 335 1.890876 TGGTGGATTCGAGTTGTTGG 58.109 50.000 0.00 0.00 0.00 3.77
333 336 1.418264 TGGTGGATTCGAGTTGTTGGA 59.582 47.619 0.00 0.00 0.00 3.53
334 337 2.076863 GGTGGATTCGAGTTGTTGGAG 58.923 52.381 0.00 0.00 0.00 3.86
335 338 1.464997 GTGGATTCGAGTTGTTGGAGC 59.535 52.381 0.00 0.00 0.00 4.70
336 339 1.087501 GGATTCGAGTTGTTGGAGCC 58.912 55.000 0.00 0.00 0.00 4.70
337 340 1.087501 GATTCGAGTTGTTGGAGCCC 58.912 55.000 0.00 0.00 0.00 5.19
338 341 0.673644 ATTCGAGTTGTTGGAGCCCG 60.674 55.000 0.00 0.00 0.00 6.13
339 342 1.750341 TTCGAGTTGTTGGAGCCCGA 61.750 55.000 0.00 0.00 0.00 5.14
340 343 1.738099 CGAGTTGTTGGAGCCCGAG 60.738 63.158 0.00 0.00 0.00 4.63
341 344 1.376037 GAGTTGTTGGAGCCCGAGG 60.376 63.158 0.00 0.00 0.00 4.63
371 374 2.279851 GCCAAACGGCCACAAACC 60.280 61.111 2.24 0.00 44.46 3.27
372 375 2.791868 GCCAAACGGCCACAAACCT 61.792 57.895 2.24 0.00 44.46 3.50
373 376 1.362355 CCAAACGGCCACAAACCTC 59.638 57.895 2.24 0.00 0.00 3.85
374 377 1.106944 CCAAACGGCCACAAACCTCT 61.107 55.000 2.24 0.00 0.00 3.69
375 378 0.744281 CAAACGGCCACAAACCTCTT 59.256 50.000 2.24 0.00 0.00 2.85
376 379 1.950909 CAAACGGCCACAAACCTCTTA 59.049 47.619 2.24 0.00 0.00 2.10
377 380 2.556622 CAAACGGCCACAAACCTCTTAT 59.443 45.455 2.24 0.00 0.00 1.73
378 381 2.579410 ACGGCCACAAACCTCTTATT 57.421 45.000 2.24 0.00 0.00 1.40
379 382 2.433436 ACGGCCACAAACCTCTTATTC 58.567 47.619 2.24 0.00 0.00 1.75
380 383 1.743394 CGGCCACAAACCTCTTATTCC 59.257 52.381 2.24 0.00 0.00 3.01
381 384 2.618045 CGGCCACAAACCTCTTATTCCT 60.618 50.000 2.24 0.00 0.00 3.36
382 385 3.431415 GGCCACAAACCTCTTATTCCTT 58.569 45.455 0.00 0.00 0.00 3.36
383 386 3.832490 GGCCACAAACCTCTTATTCCTTT 59.168 43.478 0.00 0.00 0.00 3.11
384 387 4.321974 GGCCACAAACCTCTTATTCCTTTG 60.322 45.833 0.00 0.00 0.00 2.77
385 388 4.321974 GCCACAAACCTCTTATTCCTTTGG 60.322 45.833 0.00 0.00 0.00 3.28
386 389 4.832823 CCACAAACCTCTTATTCCTTTGGT 59.167 41.667 0.00 0.00 0.00 3.67
387 390 5.304357 CCACAAACCTCTTATTCCTTTGGTT 59.696 40.000 0.00 0.00 39.17 3.67
388 391 6.183360 CCACAAACCTCTTATTCCTTTGGTTT 60.183 38.462 0.00 0.00 45.19 3.27
389 392 6.923508 CACAAACCTCTTATTCCTTTGGTTTC 59.076 38.462 0.00 0.00 43.30 2.78
390 393 5.959618 AACCTCTTATTCCTTTGGTTTCG 57.040 39.130 0.00 0.00 34.57 3.46
391 394 4.332828 ACCTCTTATTCCTTTGGTTTCGG 58.667 43.478 0.00 0.00 0.00 4.30
392 395 4.202535 ACCTCTTATTCCTTTGGTTTCGGT 60.203 41.667 0.00 0.00 0.00 4.69
393 396 4.765339 CCTCTTATTCCTTTGGTTTCGGTT 59.235 41.667 0.00 0.00 0.00 4.44
394 397 5.243060 CCTCTTATTCCTTTGGTTTCGGTTT 59.757 40.000 0.00 0.00 0.00 3.27
395 398 6.079424 TCTTATTCCTTTGGTTTCGGTTTG 57.921 37.500 0.00 0.00 0.00 2.93
396 399 5.828859 TCTTATTCCTTTGGTTTCGGTTTGA 59.171 36.000 0.00 0.00 0.00 2.69
397 400 4.584327 ATTCCTTTGGTTTCGGTTTGAG 57.416 40.909 0.00 0.00 0.00 3.02
398 401 2.303175 TCCTTTGGTTTCGGTTTGAGG 58.697 47.619 0.00 0.00 0.00 3.86
399 402 2.092321 TCCTTTGGTTTCGGTTTGAGGA 60.092 45.455 0.00 0.00 0.00 3.71
400 403 2.890945 CCTTTGGTTTCGGTTTGAGGAT 59.109 45.455 0.00 0.00 0.00 3.24
401 404 3.320826 CCTTTGGTTTCGGTTTGAGGATT 59.679 43.478 0.00 0.00 0.00 3.01
402 405 4.202212 CCTTTGGTTTCGGTTTGAGGATTT 60.202 41.667 0.00 0.00 0.00 2.17
403 406 4.314740 TTGGTTTCGGTTTGAGGATTTG 57.685 40.909 0.00 0.00 0.00 2.32
404 407 2.625790 TGGTTTCGGTTTGAGGATTTGG 59.374 45.455 0.00 0.00 0.00 3.28
405 408 2.888414 GGTTTCGGTTTGAGGATTTGGA 59.112 45.455 0.00 0.00 0.00 3.53
406 409 3.319689 GGTTTCGGTTTGAGGATTTGGAA 59.680 43.478 0.00 0.00 0.00 3.53
407 410 4.295870 GTTTCGGTTTGAGGATTTGGAAC 58.704 43.478 0.00 0.00 0.00 3.62
408 411 2.147958 TCGGTTTGAGGATTTGGAACG 58.852 47.619 0.00 0.00 0.00 3.95
409 412 1.877443 CGGTTTGAGGATTTGGAACGT 59.123 47.619 0.00 0.00 0.00 3.99
410 413 2.095919 CGGTTTGAGGATTTGGAACGTC 60.096 50.000 0.00 0.00 0.00 4.34
411 414 2.228103 GGTTTGAGGATTTGGAACGTCC 59.772 50.000 0.00 0.00 36.96 4.79
412 415 1.803334 TTGAGGATTTGGAACGTCCG 58.197 50.000 0.00 0.00 40.17 4.79
413 416 0.970640 TGAGGATTTGGAACGTCCGA 59.029 50.000 0.00 0.00 40.17 4.55
414 417 1.345089 TGAGGATTTGGAACGTCCGAA 59.655 47.619 8.55 8.55 43.67 4.30
415 418 1.730612 GAGGATTTGGAACGTCCGAAC 59.269 52.381 8.36 4.50 42.42 3.95
416 419 0.800631 GGATTTGGAACGTCCGAACC 59.199 55.000 8.36 8.40 42.42 3.62
417 420 0.441145 GATTTGGAACGTCCGAACCG 59.559 55.000 8.36 0.00 42.42 4.44
433 436 3.954999 GAACCGGTTCGAACAATTTTCA 58.045 40.909 30.33 0.00 0.00 2.69
434 437 3.343380 ACCGGTTCGAACAATTTTCAC 57.657 42.857 28.24 8.54 0.00 3.18
435 438 2.286536 ACCGGTTCGAACAATTTTCACG 60.287 45.455 28.24 18.78 0.00 4.35
436 439 2.032722 CCGGTTCGAACAATTTTCACGA 60.033 45.455 28.24 0.00 0.00 4.35
437 440 2.962191 CGGTTCGAACAATTTTCACGAC 59.038 45.455 28.24 6.66 32.89 4.34
438 441 3.294102 GGTTCGAACAATTTTCACGACC 58.706 45.455 28.24 4.45 32.89 4.79
439 442 2.934107 TCGAACAATTTTCACGACCG 57.066 45.000 0.00 0.00 0.00 4.79
440 443 1.070443 TCGAACAATTTTCACGACCGC 60.070 47.619 0.00 0.00 0.00 5.68
441 444 1.681825 GAACAATTTTCACGACCGCC 58.318 50.000 0.00 0.00 0.00 6.13
442 445 0.040781 AACAATTTTCACGACCGCCG 60.041 50.000 0.00 0.00 45.44 6.46
454 457 4.444838 CCGCCGTGGGATGACGAA 62.445 66.667 0.00 0.00 42.10 3.85
455 458 2.433491 CGCCGTGGGATGACGAAA 60.433 61.111 0.00 0.00 42.10 3.46
456 459 2.030401 CGCCGTGGGATGACGAAAA 61.030 57.895 0.00 0.00 42.10 2.29
457 460 1.570347 CGCCGTGGGATGACGAAAAA 61.570 55.000 0.00 0.00 42.10 1.94
458 461 0.808755 GCCGTGGGATGACGAAAAAT 59.191 50.000 0.00 0.00 42.10 1.82
459 462 1.467374 GCCGTGGGATGACGAAAAATG 60.467 52.381 0.00 0.00 42.10 2.32
460 463 1.810151 CCGTGGGATGACGAAAAATGT 59.190 47.619 0.00 0.00 42.10 2.71
461 464 2.159572 CCGTGGGATGACGAAAAATGTC 60.160 50.000 0.00 0.00 42.10 3.06
462 465 2.159572 CGTGGGATGACGAAAAATGTCC 60.160 50.000 0.00 0.00 42.10 4.02
463 466 2.163613 GTGGGATGACGAAAAATGTCCC 59.836 50.000 1.32 1.32 44.43 4.46
464 467 2.442413 GGGATGACGAAAAATGTCCCA 58.558 47.619 3.46 0.00 43.78 4.37
465 468 2.823154 GGGATGACGAAAAATGTCCCAA 59.177 45.455 3.46 0.00 43.78 4.12
466 469 3.366985 GGGATGACGAAAAATGTCCCAAC 60.367 47.826 3.46 0.00 43.78 3.77
467 470 3.254657 GGATGACGAAAAATGTCCCAACA 59.745 43.478 0.00 0.00 40.38 3.33
468 471 3.980646 TGACGAAAAATGTCCCAACAG 57.019 42.857 0.00 0.00 39.20 3.16
469 472 3.283751 TGACGAAAAATGTCCCAACAGT 58.716 40.909 0.00 0.00 39.20 3.55
470 473 3.066064 TGACGAAAAATGTCCCAACAGTG 59.934 43.478 0.00 0.00 39.20 3.66
471 474 3.020984 ACGAAAAATGTCCCAACAGTGT 58.979 40.909 0.00 0.00 39.20 3.55
472 475 3.445805 ACGAAAAATGTCCCAACAGTGTT 59.554 39.130 1.64 1.64 39.20 3.32
473 476 4.081917 ACGAAAAATGTCCCAACAGTGTTT 60.082 37.500 5.57 0.00 39.20 2.83
474 477 4.867608 CGAAAAATGTCCCAACAGTGTTTT 59.132 37.500 5.57 0.00 39.20 2.43
475 478 5.350091 CGAAAAATGTCCCAACAGTGTTTTT 59.650 36.000 5.57 1.72 37.60 1.94
476 479 6.454981 CGAAAAATGTCCCAACAGTGTTTTTC 60.455 38.462 5.57 10.06 42.14 2.29
477 480 5.413309 AAATGTCCCAACAGTGTTTTTCA 57.587 34.783 5.57 4.29 39.20 2.69
478 481 5.413309 AATGTCCCAACAGTGTTTTTCAA 57.587 34.783 5.57 0.00 39.20 2.69
479 482 4.873746 TGTCCCAACAGTGTTTTTCAAA 57.126 36.364 5.57 0.00 0.00 2.69
480 483 4.561105 TGTCCCAACAGTGTTTTTCAAAC 58.439 39.130 5.57 0.37 0.00 2.93
481 484 4.039245 TGTCCCAACAGTGTTTTTCAAACA 59.961 37.500 5.57 2.94 0.00 2.83
482 485 5.175127 GTCCCAACAGTGTTTTTCAAACAT 58.825 37.500 5.57 0.00 32.23 2.71
483 486 5.641636 GTCCCAACAGTGTTTTTCAAACATT 59.358 36.000 5.57 0.00 32.23 2.71
484 487 6.148645 GTCCCAACAGTGTTTTTCAAACATTT 59.851 34.615 5.57 0.00 32.23 2.32
485 488 6.148480 TCCCAACAGTGTTTTTCAAACATTTG 59.852 34.615 5.57 9.37 39.48 2.32
486 489 6.313252 CCAACAGTGTTTTTCAAACATTTGG 58.687 36.000 5.57 17.29 38.66 3.28
487 490 6.313252 CAACAGTGTTTTTCAAACATTTGGG 58.687 36.000 5.57 2.52 38.66 4.12
488 491 5.799213 ACAGTGTTTTTCAAACATTTGGGA 58.201 33.333 5.40 0.00 38.66 4.37
489 492 5.874261 ACAGTGTTTTTCAAACATTTGGGAG 59.126 36.000 5.40 0.00 38.66 4.30
497 500 2.128771 AACATTTGGGAGGGTGATCG 57.871 50.000 0.00 0.00 0.00 3.69
533 536 2.674852 CACATGAGGAAGGACGTGAATG 59.325 50.000 0.00 0.00 0.00 2.67
551 554 1.020437 TGACATGCAAACAACGCAGA 58.980 45.000 0.00 0.00 43.88 4.26
609 627 1.067060 GCTGACAAAAGCCGAGGTTTT 59.933 47.619 7.65 7.65 42.72 2.43
624 642 3.490348 AGGTTTTCTTCATGTGGAGTGG 58.510 45.455 0.00 0.00 0.00 4.00
674 692 2.560119 GGGCGCATGTGTTGGTTGA 61.560 57.895 10.83 0.00 0.00 3.18
733 752 0.936297 GCAGCGAGCCAAACAACAAG 60.936 55.000 0.00 0.00 37.23 3.16
811 833 2.185310 ATTTTCCGTGCGCTCCCTCT 62.185 55.000 9.73 0.00 0.00 3.69
838 868 0.533032 GTTCTCCCCACCTCTCTTCG 59.467 60.000 0.00 0.00 0.00 3.79
843 873 2.685380 CCACCTCTCTTCGCCCCT 60.685 66.667 0.00 0.00 0.00 4.79
909 939 0.198696 TCCCTTCCCTTCCCTTCCTT 59.801 55.000 0.00 0.00 0.00 3.36
1209 1239 2.284625 ATCTGGGACACGGCAGGA 60.285 61.111 0.00 0.00 0.00 3.86
1254 1289 5.106078 TGTTGGTTGAGTTTGTTTGGTAGAC 60.106 40.000 0.00 0.00 0.00 2.59
1258 1293 5.355910 GGTTGAGTTTGTTTGGTAGACAGAA 59.644 40.000 0.00 0.00 0.00 3.02
1259 1294 6.458342 GGTTGAGTTTGTTTGGTAGACAGAAG 60.458 42.308 0.00 0.00 0.00 2.85
1327 1367 4.868171 TGCTCAACCATAGTCACGATTAAC 59.132 41.667 0.00 0.00 0.00 2.01
1346 1386 6.533819 TTAACGGAAAATGGCGTATCATAG 57.466 37.500 0.00 0.00 0.00 2.23
1358 1404 6.811954 TGGCGTATCATAGTAAGAATGACAA 58.188 36.000 0.00 0.00 36.24 3.18
1418 1464 4.256110 AGTTCTCATCGCATCACATTTCA 58.744 39.130 0.00 0.00 0.00 2.69
1584 1642 9.495572 CCAGACCCATATTCTAATTTAACTCTC 57.504 37.037 0.00 0.00 0.00 3.20
1603 1661 3.005554 CTCTCAAACCATCGCTGTCAAT 58.994 45.455 0.00 0.00 0.00 2.57
1647 1705 8.635124 GTTATTGGAATACGTGATGTTTGTTTG 58.365 33.333 0.00 0.00 0.00 2.93
1654 1712 5.103290 ACGTGATGTTTGTTTGGTCATAC 57.897 39.130 0.00 0.00 0.00 2.39
1699 1757 6.043127 TGTGTAGATATGTGAGCCCATGTTAT 59.957 38.462 0.00 0.00 0.00 1.89
1736 1794 5.362430 GTCCACCTGGCATTGGATATAAAAA 59.638 40.000 18.16 0.00 43.85 1.94
1786 1844 0.329261 TAAGAGGCATGCAAGCACCT 59.671 50.000 21.36 8.76 35.83 4.00
1791 1849 0.109132 GGCATGCAAGCACCTTGTAC 60.109 55.000 21.36 0.00 42.77 2.90
1792 1850 0.883833 GCATGCAAGCACCTTGTACT 59.116 50.000 14.21 0.00 42.77 2.73
1793 1851 2.083774 GCATGCAAGCACCTTGTACTA 58.916 47.619 14.21 0.00 42.77 1.82
1801 1859 5.713025 CAAGCACCTTGTACTATTTGCAAT 58.287 37.500 0.00 0.00 36.79 3.56
1888 1947 6.587608 CCTAATTGTTGTCCAAAAAGCATCTC 59.412 38.462 0.00 0.00 36.44 2.75
1891 1950 0.881118 TGTCCAAAAAGCATCTCGCC 59.119 50.000 0.00 0.00 44.04 5.54
1905 1966 1.544691 TCTCGCCGCTAAGGATATTCC 59.455 52.381 0.00 0.00 45.00 3.01
2030 2091 6.535150 TCGAGAATGTTCTGTATGACATTTCC 59.465 38.462 0.00 0.00 37.73 3.13
2058 2120 3.118847 TGGCTTAGTCAATCAGCTCTCAG 60.119 47.826 0.00 0.00 33.76 3.35
2060 2122 3.864583 GCTTAGTCAATCAGCTCTCAGTG 59.135 47.826 0.00 0.00 0.00 3.66
2064 2126 3.070734 AGTCAATCAGCTCTCAGTGTGTT 59.929 43.478 0.00 0.00 0.00 3.32
2242 2305 3.381272 CGTCCACCTGCATTTTTGGATAT 59.619 43.478 8.48 0.00 40.27 1.63
2291 2354 0.747255 TCTGTAAGAGGGATGCGAGC 59.253 55.000 0.00 0.00 38.67 5.03
2404 2467 5.534654 TCCAAAAAGTATGTTGCTGCTAAGT 59.465 36.000 0.00 0.00 0.00 2.24
2597 2694 4.183101 CACCAGTTTCACAAGCACAATTT 58.817 39.130 0.00 0.00 0.00 1.82
2937 3034 1.021390 CACTGGAGGCCATGAACGTC 61.021 60.000 5.01 0.00 30.82 4.34
3171 3268 3.947196 GGGTGACTGCAAATATGACATCA 59.053 43.478 0.00 0.00 0.00 3.07
3178 3275 8.089597 TGACTGCAAATATGACATCATTTTTGT 58.910 29.630 25.42 14.41 46.90 2.83
3455 3552 3.282021 GCTTTCCTGCTGAATGGATGTA 58.718 45.455 0.00 0.00 31.67 2.29
3467 3564 7.039082 TGCTGAATGGATGTATACTATGTAGCA 60.039 37.037 4.17 7.30 31.45 3.49
3555 3652 3.914426 CTGGTAGCCAGTATGAGGTTT 57.086 47.619 6.99 0.00 45.82 3.27
3557 3654 4.694339 CTGGTAGCCAGTATGAGGTTTAC 58.306 47.826 6.99 0.00 45.82 2.01
3560 3657 5.057149 GGTAGCCAGTATGAGGTTTACATG 58.943 45.833 0.00 0.00 39.69 3.21
3561 3658 4.156455 AGCCAGTATGAGGTTTACATGG 57.844 45.455 0.00 0.00 39.69 3.66
3562 3659 3.523564 AGCCAGTATGAGGTTTACATGGT 59.476 43.478 0.00 0.00 39.69 3.55
3563 3660 4.018415 AGCCAGTATGAGGTTTACATGGTT 60.018 41.667 0.00 0.00 39.69 3.67
3564 3661 5.190925 AGCCAGTATGAGGTTTACATGGTTA 59.809 40.000 0.00 0.00 39.69 2.85
3565 3662 6.062095 GCCAGTATGAGGTTTACATGGTTAT 58.938 40.000 0.00 0.00 39.69 1.89
3566 3663 7.071950 AGCCAGTATGAGGTTTACATGGTTATA 59.928 37.037 0.00 0.00 39.69 0.98
3567 3664 7.172703 GCCAGTATGAGGTTTACATGGTTATAC 59.827 40.741 0.00 0.00 39.69 1.47
3568 3665 8.429641 CCAGTATGAGGTTTACATGGTTATACT 58.570 37.037 0.00 0.00 39.69 2.12
3569 3666 9.261180 CAGTATGAGGTTTACATGGTTATACTG 57.739 37.037 0.00 0.00 39.69 2.74
3640 3737 8.739039 CATGTTTCTTATCACCCTATGTTTTCA 58.261 33.333 0.00 0.00 0.00 2.69
3661 3923 6.822667 TCATATGCTACCATTTTATGCCTG 57.177 37.500 0.00 0.00 32.85 4.85
3757 4020 9.558396 AAAGCTCTTATTTAGATGAAGATGAGG 57.442 33.333 0.00 0.00 30.92 3.86
3771 4035 0.712380 ATGAGGCAACCCCTTCCATT 59.288 50.000 0.00 0.00 46.60 3.16
3786 4050 7.122204 ACCCCTTCCATTTATTTTACTTTCTCG 59.878 37.037 0.00 0.00 0.00 4.04
3788 4052 7.362574 CCCTTCCATTTATTTTACTTTCTCGCA 60.363 37.037 0.00 0.00 0.00 5.10
3798 4062 7.548196 TTTTACTTTCTCGCAGGGTATTATG 57.452 36.000 0.00 0.00 0.00 1.90
3808 4072 4.394920 CGCAGGGTATTATGTGACTTTGTT 59.605 41.667 0.00 0.00 0.00 2.83
3813 4077 9.661563 CAGGGTATTATGTGACTTTGTTAACTA 57.338 33.333 7.22 0.00 0.00 2.24
3819 4083 8.840833 TTATGTGACTTTGTTAACTAGCATCA 57.159 30.769 7.22 2.10 0.00 3.07
3830 4094 8.737168 TGTTAACTAGCATCATTATTTGCTCT 57.263 30.769 7.22 0.00 45.83 4.09
3831 4095 9.177608 TGTTAACTAGCATCATTATTTGCTCTT 57.822 29.630 7.22 0.00 45.83 2.85
3839 4103 7.028962 GCATCATTATTTGCTCTTGTGTGTAA 58.971 34.615 0.00 0.00 35.95 2.41
3851 4115 6.164417 TCTTGTGTGTAAGCAAACTACCTA 57.836 37.500 0.00 0.00 34.00 3.08
3956 4222 4.080863 CAGTCTGTTAGGTGGGCTTAGAAT 60.081 45.833 0.00 0.00 0.00 2.40
3957 4223 4.080863 AGTCTGTTAGGTGGGCTTAGAATG 60.081 45.833 0.00 0.00 0.00 2.67
3962 4229 5.475564 TGTTAGGTGGGCTTAGAATGTTTTC 59.524 40.000 0.00 0.00 0.00 2.29
3972 4239 8.799367 GGGCTTAGAATGTTTTCTTTTACCTTA 58.201 33.333 0.00 0.00 42.29 2.69
4022 4310 6.773976 TTCATTGTATTGGATCCTGGAAAC 57.226 37.500 14.23 4.97 0.00 2.78
4039 4327 4.009675 GGAAACTGATGGTATGCAGACAA 58.990 43.478 14.36 1.34 36.07 3.18
4090 4378 6.437928 TGCAGTCTAGTTGTAGCAAATTTTG 58.562 36.000 4.72 4.72 0.00 2.44
4091 4379 6.262049 TGCAGTCTAGTTGTAGCAAATTTTGA 59.738 34.615 13.26 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 4.738998 CGCCAGGCCCACATTCCA 62.739 66.667 5.63 0.00 0.00 3.53
38 39 3.222354 GACCAAGGTCCACGTCGCT 62.222 63.158 8.06 0.00 39.08 4.93
44 45 1.534729 GAATGGTGACCAAGGTCCAC 58.465 55.000 9.06 13.24 43.97 4.02
130 131 1.305297 TCTGACCATCCCAGCTCGT 60.305 57.895 0.00 0.00 0.00 4.18
151 152 0.764752 CCCTACCCCTCTGATCACCC 60.765 65.000 0.00 0.00 0.00 4.61
159 160 0.103554 AACCCAAACCCTACCCCTCT 60.104 55.000 0.00 0.00 0.00 3.69
162 163 0.708209 ATCAACCCAAACCCTACCCC 59.292 55.000 0.00 0.00 0.00 4.95
177 178 3.866910 GCTATTTAACCGACCGACATCAA 59.133 43.478 0.00 0.00 0.00 2.57
216 219 4.527944 TCAAACCACACACATTAACCTGA 58.472 39.130 0.00 0.00 0.00 3.86
217 220 4.338118 ACTCAAACCACACACATTAACCTG 59.662 41.667 0.00 0.00 0.00 4.00
218 221 4.532834 ACTCAAACCACACACATTAACCT 58.467 39.130 0.00 0.00 0.00 3.50
219 222 4.911514 ACTCAAACCACACACATTAACC 57.088 40.909 0.00 0.00 0.00 2.85
220 223 5.562113 GCCTACTCAAACCACACACATTAAC 60.562 44.000 0.00 0.00 0.00 2.01
221 224 4.517453 GCCTACTCAAACCACACACATTAA 59.483 41.667 0.00 0.00 0.00 1.40
222 225 4.069304 GCCTACTCAAACCACACACATTA 58.931 43.478 0.00 0.00 0.00 1.90
223 226 2.884639 GCCTACTCAAACCACACACATT 59.115 45.455 0.00 0.00 0.00 2.71
224 227 2.106511 AGCCTACTCAAACCACACACAT 59.893 45.455 0.00 0.00 0.00 3.21
225 228 1.488812 AGCCTACTCAAACCACACACA 59.511 47.619 0.00 0.00 0.00 3.72
226 229 2.256117 AGCCTACTCAAACCACACAC 57.744 50.000 0.00 0.00 0.00 3.82
227 230 3.290948 AAAGCCTACTCAAACCACACA 57.709 42.857 0.00 0.00 0.00 3.72
228 231 3.303791 CGAAAAGCCTACTCAAACCACAC 60.304 47.826 0.00 0.00 0.00 3.82
229 232 2.875933 CGAAAAGCCTACTCAAACCACA 59.124 45.455 0.00 0.00 0.00 4.17
230 233 2.876550 ACGAAAAGCCTACTCAAACCAC 59.123 45.455 0.00 0.00 0.00 4.16
231 234 3.202829 ACGAAAAGCCTACTCAAACCA 57.797 42.857 0.00 0.00 0.00 3.67
232 235 4.287720 CAAACGAAAAGCCTACTCAAACC 58.712 43.478 0.00 0.00 0.00 3.27
233 236 3.729217 GCAAACGAAAAGCCTACTCAAAC 59.271 43.478 0.00 0.00 0.00 2.93
234 237 3.243267 GGCAAACGAAAAGCCTACTCAAA 60.243 43.478 0.00 0.00 44.92 2.69
235 238 2.292292 GGCAAACGAAAAGCCTACTCAA 59.708 45.455 0.00 0.00 44.92 3.02
236 239 1.877443 GGCAAACGAAAAGCCTACTCA 59.123 47.619 0.00 0.00 44.92 3.41
237 240 2.613730 GGCAAACGAAAAGCCTACTC 57.386 50.000 0.00 0.00 44.92 2.59
257 260 2.126888 CCGCATTCACAACGGCAC 60.127 61.111 0.00 0.00 40.55 5.01
261 264 2.499520 CGTGCCGCATTCACAACG 60.500 61.111 0.00 0.00 34.27 4.10
262 265 2.126888 CCGTGCCGCATTCACAAC 60.127 61.111 0.00 0.00 34.27 3.32
263 266 2.281139 TCCGTGCCGCATTCACAA 60.281 55.556 0.00 0.00 34.27 3.33
264 267 2.741985 CTCCGTGCCGCATTCACA 60.742 61.111 0.00 0.00 34.27 3.58
265 268 2.434185 TCTCCGTGCCGCATTCAC 60.434 61.111 0.00 0.00 0.00 3.18
266 269 2.125552 CTCTCCGTGCCGCATTCA 60.126 61.111 0.00 0.00 0.00 2.57
267 270 2.125512 ACTCTCCGTGCCGCATTC 60.126 61.111 0.00 0.00 0.00 2.67
268 271 2.434884 CACTCTCCGTGCCGCATT 60.435 61.111 0.00 0.00 36.72 3.56
269 272 3.362399 CTCACTCTCCGTGCCGCAT 62.362 63.158 0.00 0.00 43.46 4.73
270 273 4.056125 CTCACTCTCCGTGCCGCA 62.056 66.667 0.00 0.00 43.46 5.69
271 274 4.057428 ACTCACTCTCCGTGCCGC 62.057 66.667 0.00 0.00 43.46 6.53
272 275 2.126307 CACTCACTCTCCGTGCCG 60.126 66.667 0.00 0.00 43.46 5.69
273 276 2.262915 CCACTCACTCTCCGTGCC 59.737 66.667 0.00 0.00 43.46 5.01
274 277 1.080434 GTCCACTCACTCTCCGTGC 60.080 63.158 0.00 0.00 43.46 5.34
275 278 1.210413 CGTCCACTCACTCTCCGTG 59.790 63.158 0.00 0.00 45.18 4.94
276 279 1.228184 ACGTCCACTCACTCTCCGT 60.228 57.895 0.00 0.00 0.00 4.69
277 280 1.210413 CACGTCCACTCACTCTCCG 59.790 63.158 0.00 0.00 0.00 4.63
278 281 1.080434 GCACGTCCACTCACTCTCC 60.080 63.158 0.00 0.00 0.00 3.71
279 282 1.442857 CGCACGTCCACTCACTCTC 60.443 63.158 0.00 0.00 0.00 3.20
280 283 2.645567 CGCACGTCCACTCACTCT 59.354 61.111 0.00 0.00 0.00 3.24
281 284 2.416244 TTCCGCACGTCCACTCACTC 62.416 60.000 0.00 0.00 0.00 3.51
282 285 2.023414 TTTCCGCACGTCCACTCACT 62.023 55.000 0.00 0.00 0.00 3.41
283 286 1.557443 CTTTCCGCACGTCCACTCAC 61.557 60.000 0.00 0.00 0.00 3.51
284 287 1.300620 CTTTCCGCACGTCCACTCA 60.301 57.895 0.00 0.00 0.00 3.41
285 288 1.300697 ACTTTCCGCACGTCCACTC 60.301 57.895 0.00 0.00 0.00 3.51
286 289 1.594293 CACTTTCCGCACGTCCACT 60.594 57.895 0.00 0.00 0.00 4.00
287 290 1.885850 ACACTTTCCGCACGTCCAC 60.886 57.895 0.00 0.00 0.00 4.02
288 291 1.885388 CACACTTTCCGCACGTCCA 60.885 57.895 0.00 0.00 0.00 4.02
289 292 2.935955 CACACTTTCCGCACGTCC 59.064 61.111 0.00 0.00 0.00 4.79
290 293 2.248431 GCACACTTTCCGCACGTC 59.752 61.111 0.00 0.00 0.00 4.34
291 294 3.636043 CGCACACTTTCCGCACGT 61.636 61.111 0.00 0.00 0.00 4.49
292 295 2.640736 AAACGCACACTTTCCGCACG 62.641 55.000 0.00 0.00 0.00 5.34
293 296 0.524604 AAAACGCACACTTTCCGCAC 60.525 50.000 0.00 0.00 0.00 5.34
294 297 0.171455 AAAAACGCACACTTTCCGCA 59.829 45.000 0.00 0.00 0.00 5.69
295 298 0.570272 CAAAAACGCACACTTTCCGC 59.430 50.000 0.00 0.00 0.00 5.54
296 299 1.196200 CCAAAAACGCACACTTTCCG 58.804 50.000 0.00 0.00 0.00 4.30
297 300 1.923864 CACCAAAAACGCACACTTTCC 59.076 47.619 0.00 0.00 0.00 3.13
298 301 1.923864 CCACCAAAAACGCACACTTTC 59.076 47.619 0.00 0.00 0.00 2.62
299 302 1.546476 TCCACCAAAAACGCACACTTT 59.454 42.857 0.00 0.00 0.00 2.66
300 303 1.178276 TCCACCAAAAACGCACACTT 58.822 45.000 0.00 0.00 0.00 3.16
301 304 1.398692 ATCCACCAAAAACGCACACT 58.601 45.000 0.00 0.00 0.00 3.55
302 305 2.124122 GAATCCACCAAAAACGCACAC 58.876 47.619 0.00 0.00 0.00 3.82
303 306 1.268794 CGAATCCACCAAAAACGCACA 60.269 47.619 0.00 0.00 0.00 4.57
304 307 1.002251 TCGAATCCACCAAAAACGCAC 60.002 47.619 0.00 0.00 0.00 5.34
305 308 1.265635 CTCGAATCCACCAAAAACGCA 59.734 47.619 0.00 0.00 0.00 5.24
306 309 1.265905 ACTCGAATCCACCAAAAACGC 59.734 47.619 0.00 0.00 0.00 4.84
307 310 3.242936 ACAACTCGAATCCACCAAAAACG 60.243 43.478 0.00 0.00 0.00 3.60
308 311 4.301637 ACAACTCGAATCCACCAAAAAC 57.698 40.909 0.00 0.00 0.00 2.43
309 312 4.440802 CCAACAACTCGAATCCACCAAAAA 60.441 41.667 0.00 0.00 0.00 1.94
310 313 3.067461 CCAACAACTCGAATCCACCAAAA 59.933 43.478 0.00 0.00 0.00 2.44
311 314 2.621055 CCAACAACTCGAATCCACCAAA 59.379 45.455 0.00 0.00 0.00 3.28
312 315 2.158740 TCCAACAACTCGAATCCACCAA 60.159 45.455 0.00 0.00 0.00 3.67
313 316 1.418264 TCCAACAACTCGAATCCACCA 59.582 47.619 0.00 0.00 0.00 4.17
314 317 2.076863 CTCCAACAACTCGAATCCACC 58.923 52.381 0.00 0.00 0.00 4.61
315 318 1.464997 GCTCCAACAACTCGAATCCAC 59.535 52.381 0.00 0.00 0.00 4.02
316 319 1.610624 GGCTCCAACAACTCGAATCCA 60.611 52.381 0.00 0.00 0.00 3.41
317 320 1.087501 GGCTCCAACAACTCGAATCC 58.912 55.000 0.00 0.00 0.00 3.01
318 321 1.087501 GGGCTCCAACAACTCGAATC 58.912 55.000 0.00 0.00 0.00 2.52
319 322 0.673644 CGGGCTCCAACAACTCGAAT 60.674 55.000 0.00 0.00 0.00 3.34
320 323 1.301401 CGGGCTCCAACAACTCGAA 60.301 57.895 0.00 0.00 0.00 3.71
321 324 2.154798 CTCGGGCTCCAACAACTCGA 62.155 60.000 0.00 0.00 0.00 4.04
322 325 1.738099 CTCGGGCTCCAACAACTCG 60.738 63.158 0.00 0.00 0.00 4.18
323 326 1.376037 CCTCGGGCTCCAACAACTC 60.376 63.158 0.00 0.00 0.00 3.01
324 327 2.750350 CCTCGGGCTCCAACAACT 59.250 61.111 0.00 0.00 0.00 3.16
325 328 3.056328 GCCTCGGGCTCCAACAAC 61.056 66.667 7.58 0.00 46.69 3.32
355 358 1.106944 AGAGGTTTGTGGCCGTTTGG 61.107 55.000 0.00 0.00 38.77 3.28
356 359 0.744281 AAGAGGTTTGTGGCCGTTTG 59.256 50.000 0.00 0.00 0.00 2.93
357 360 2.351706 TAAGAGGTTTGTGGCCGTTT 57.648 45.000 0.00 0.00 0.00 3.60
358 361 2.579410 ATAAGAGGTTTGTGGCCGTT 57.421 45.000 0.00 0.00 0.00 4.44
359 362 2.433436 GAATAAGAGGTTTGTGGCCGT 58.567 47.619 0.00 0.00 0.00 5.68
360 363 1.743394 GGAATAAGAGGTTTGTGGCCG 59.257 52.381 0.00 0.00 0.00 6.13
361 364 3.087370 AGGAATAAGAGGTTTGTGGCC 57.913 47.619 0.00 0.00 0.00 5.36
362 365 4.321974 CCAAAGGAATAAGAGGTTTGTGGC 60.322 45.833 0.00 0.00 0.00 5.01
363 366 4.832823 ACCAAAGGAATAAGAGGTTTGTGG 59.167 41.667 0.00 0.00 0.00 4.17
364 367 6.405278 AACCAAAGGAATAAGAGGTTTGTG 57.595 37.500 0.00 0.00 35.99 3.33
365 368 6.238925 CGAAACCAAAGGAATAAGAGGTTTGT 60.239 38.462 11.62 0.00 46.11 2.83
366 369 6.149633 CGAAACCAAAGGAATAAGAGGTTTG 58.850 40.000 11.62 2.17 46.11 2.93
368 371 4.765339 CCGAAACCAAAGGAATAAGAGGTT 59.235 41.667 0.00 0.00 40.81 3.50
369 372 4.202535 ACCGAAACCAAAGGAATAAGAGGT 60.203 41.667 0.00 0.00 0.00 3.85
370 373 4.332828 ACCGAAACCAAAGGAATAAGAGG 58.667 43.478 0.00 0.00 0.00 3.69
371 374 5.959618 AACCGAAACCAAAGGAATAAGAG 57.040 39.130 0.00 0.00 0.00 2.85
372 375 5.828859 TCAAACCGAAACCAAAGGAATAAGA 59.171 36.000 0.00 0.00 0.00 2.10
373 376 6.079424 TCAAACCGAAACCAAAGGAATAAG 57.921 37.500 0.00 0.00 0.00 1.73
374 377 5.010213 CCTCAAACCGAAACCAAAGGAATAA 59.990 40.000 0.00 0.00 0.00 1.40
375 378 4.521256 CCTCAAACCGAAACCAAAGGAATA 59.479 41.667 0.00 0.00 0.00 1.75
376 379 3.320826 CCTCAAACCGAAACCAAAGGAAT 59.679 43.478 0.00 0.00 0.00 3.01
377 380 2.691011 CCTCAAACCGAAACCAAAGGAA 59.309 45.455 0.00 0.00 0.00 3.36
378 381 2.092321 TCCTCAAACCGAAACCAAAGGA 60.092 45.455 0.00 0.00 0.00 3.36
379 382 2.303175 TCCTCAAACCGAAACCAAAGG 58.697 47.619 0.00 0.00 0.00 3.11
380 383 4.584327 AATCCTCAAACCGAAACCAAAG 57.416 40.909 0.00 0.00 0.00 2.77
381 384 4.442192 CCAAATCCTCAAACCGAAACCAAA 60.442 41.667 0.00 0.00 0.00 3.28
382 385 3.068873 CCAAATCCTCAAACCGAAACCAA 59.931 43.478 0.00 0.00 0.00 3.67
383 386 2.625790 CCAAATCCTCAAACCGAAACCA 59.374 45.455 0.00 0.00 0.00 3.67
384 387 2.888414 TCCAAATCCTCAAACCGAAACC 59.112 45.455 0.00 0.00 0.00 3.27
385 388 4.295870 GTTCCAAATCCTCAAACCGAAAC 58.704 43.478 0.00 0.00 0.00 2.78
386 389 3.003897 CGTTCCAAATCCTCAAACCGAAA 59.996 43.478 0.00 0.00 0.00 3.46
387 390 2.550606 CGTTCCAAATCCTCAAACCGAA 59.449 45.455 0.00 0.00 0.00 4.30
388 391 2.147958 CGTTCCAAATCCTCAAACCGA 58.852 47.619 0.00 0.00 0.00 4.69
389 392 1.877443 ACGTTCCAAATCCTCAAACCG 59.123 47.619 0.00 0.00 0.00 4.44
390 393 2.228103 GGACGTTCCAAATCCTCAAACC 59.772 50.000 0.00 0.00 36.28 3.27
391 394 2.095919 CGGACGTTCCAAATCCTCAAAC 60.096 50.000 0.00 0.00 35.91 2.93
392 395 2.147958 CGGACGTTCCAAATCCTCAAA 58.852 47.619 0.00 0.00 35.91 2.69
393 396 1.345089 TCGGACGTTCCAAATCCTCAA 59.655 47.619 0.00 0.00 35.91 3.02
394 397 0.970640 TCGGACGTTCCAAATCCTCA 59.029 50.000 0.00 0.00 35.91 3.86
395 398 1.730612 GTTCGGACGTTCCAAATCCTC 59.269 52.381 0.00 0.00 35.91 3.71
396 399 1.609841 GGTTCGGACGTTCCAAATCCT 60.610 52.381 0.00 0.00 35.91 3.24
397 400 0.800631 GGTTCGGACGTTCCAAATCC 59.199 55.000 0.00 0.00 35.91 3.01
398 401 0.441145 CGGTTCGGACGTTCCAAATC 59.559 55.000 0.00 0.00 35.91 2.17
399 402 2.535588 CGGTTCGGACGTTCCAAAT 58.464 52.632 0.00 0.00 35.91 2.32
400 403 4.030821 CGGTTCGGACGTTCCAAA 57.969 55.556 0.00 0.00 35.91 3.28
412 415 3.727227 GTGAAAATTGTTCGAACCGGTTC 59.273 43.478 33.18 33.18 36.29 3.62
413 416 3.697982 GTGAAAATTGTTCGAACCGGTT 58.302 40.909 22.50 22.50 0.00 4.44
414 417 2.286536 CGTGAAAATTGTTCGAACCGGT 60.287 45.455 24.78 0.00 0.00 5.28
415 418 2.032722 TCGTGAAAATTGTTCGAACCGG 60.033 45.455 24.78 0.00 0.00 5.28
416 419 2.962191 GTCGTGAAAATTGTTCGAACCG 59.038 45.455 24.78 17.38 32.56 4.44
417 420 3.294102 GGTCGTGAAAATTGTTCGAACC 58.706 45.455 24.78 9.23 33.04 3.62
418 421 2.962191 CGGTCGTGAAAATTGTTCGAAC 59.038 45.455 21.42 21.42 35.34 3.95
419 422 2.600320 GCGGTCGTGAAAATTGTTCGAA 60.600 45.455 0.00 0.00 32.56 3.71
420 423 1.070443 GCGGTCGTGAAAATTGTTCGA 60.070 47.619 0.00 0.00 0.00 3.71
421 424 1.314581 GCGGTCGTGAAAATTGTTCG 58.685 50.000 0.00 0.00 0.00 3.95
422 425 1.681825 GGCGGTCGTGAAAATTGTTC 58.318 50.000 0.00 0.00 0.00 3.18
423 426 0.040781 CGGCGGTCGTGAAAATTGTT 60.041 50.000 0.00 0.00 0.00 2.83
424 427 1.572447 CGGCGGTCGTGAAAATTGT 59.428 52.632 0.00 0.00 0.00 2.71
425 428 4.433102 CGGCGGTCGTGAAAATTG 57.567 55.556 0.00 0.00 0.00 2.32
437 440 3.943479 TTTCGTCATCCCACGGCGG 62.943 63.158 13.24 0.00 40.35 6.13
438 441 1.570347 TTTTTCGTCATCCCACGGCG 61.570 55.000 4.80 4.80 40.35 6.46
439 442 0.808755 ATTTTTCGTCATCCCACGGC 59.191 50.000 0.00 0.00 40.35 5.68
440 443 1.810151 ACATTTTTCGTCATCCCACGG 59.190 47.619 0.00 0.00 40.35 4.94
441 444 2.159572 GGACATTTTTCGTCATCCCACG 60.160 50.000 0.00 0.00 41.36 4.94
442 445 2.163613 GGGACATTTTTCGTCATCCCAC 59.836 50.000 2.15 0.00 44.53 4.61
443 446 2.442413 GGGACATTTTTCGTCATCCCA 58.558 47.619 2.15 0.00 44.53 4.37
444 447 2.442413 TGGGACATTTTTCGTCATCCC 58.558 47.619 0.00 0.00 45.24 3.85
445 448 3.254657 TGTTGGGACATTTTTCGTCATCC 59.745 43.478 0.00 0.00 39.30 3.51
446 449 4.023193 ACTGTTGGGACATTTTTCGTCATC 60.023 41.667 0.00 0.00 39.30 2.92
447 450 3.888930 ACTGTTGGGACATTTTTCGTCAT 59.111 39.130 0.00 0.00 39.30 3.06
448 451 3.066064 CACTGTTGGGACATTTTTCGTCA 59.934 43.478 0.00 0.00 39.30 4.35
449 452 3.066203 ACACTGTTGGGACATTTTTCGTC 59.934 43.478 0.00 0.00 39.30 4.20
450 453 3.020984 ACACTGTTGGGACATTTTTCGT 58.979 40.909 0.00 0.00 39.30 3.85
451 454 3.708563 ACACTGTTGGGACATTTTTCG 57.291 42.857 0.00 0.00 39.30 3.46
452 455 6.370166 TGAAAAACACTGTTGGGACATTTTTC 59.630 34.615 15.60 15.60 43.80 2.29
453 456 6.234177 TGAAAAACACTGTTGGGACATTTTT 58.766 32.000 0.00 0.00 37.80 1.94
454 457 5.799213 TGAAAAACACTGTTGGGACATTTT 58.201 33.333 0.00 0.00 39.30 1.82
455 458 5.413309 TGAAAAACACTGTTGGGACATTT 57.587 34.783 0.00 0.00 39.30 2.32
456 459 5.413309 TTGAAAAACACTGTTGGGACATT 57.587 34.783 0.00 0.00 39.30 2.71
457 460 5.175127 GTTTGAAAAACACTGTTGGGACAT 58.825 37.500 0.00 0.00 39.30 3.06
458 461 4.039245 TGTTTGAAAAACACTGTTGGGACA 59.961 37.500 1.52 0.00 0.00 4.02
459 462 4.561105 TGTTTGAAAAACACTGTTGGGAC 58.439 39.130 1.52 0.00 0.00 4.46
460 463 4.873746 TGTTTGAAAAACACTGTTGGGA 57.126 36.364 1.52 0.00 0.00 4.37
461 464 6.313252 CAAATGTTTGAAAAACACTGTTGGG 58.687 36.000 7.66 0.00 40.55 4.12
462 465 6.313252 CCAAATGTTTGAAAAACACTGTTGG 58.687 36.000 19.64 19.64 40.55 3.77
463 466 6.148480 TCCCAAATGTTTGAAAAACACTGTTG 59.852 34.615 7.66 11.34 40.55 3.33
464 467 6.234177 TCCCAAATGTTTGAAAAACACTGTT 58.766 32.000 7.66 1.25 40.55 3.16
465 468 5.799213 TCCCAAATGTTTGAAAAACACTGT 58.201 33.333 7.66 0.00 40.55 3.55
466 469 5.294060 CCTCCCAAATGTTTGAAAAACACTG 59.706 40.000 7.66 8.27 40.55 3.66
467 470 5.427378 CCTCCCAAATGTTTGAAAAACACT 58.573 37.500 7.66 0.00 40.55 3.55
468 471 4.574421 CCCTCCCAAATGTTTGAAAAACAC 59.426 41.667 7.66 0.00 40.55 3.32
469 472 4.226168 ACCCTCCCAAATGTTTGAAAAACA 59.774 37.500 7.92 7.92 40.55 2.83
470 473 4.574421 CACCCTCCCAAATGTTTGAAAAAC 59.426 41.667 7.04 0.00 40.55 2.43
471 474 4.471386 TCACCCTCCCAAATGTTTGAAAAA 59.529 37.500 7.04 0.00 40.55 1.94
472 475 4.033709 TCACCCTCCCAAATGTTTGAAAA 58.966 39.130 7.04 0.00 40.55 2.29
473 476 3.647636 TCACCCTCCCAAATGTTTGAAA 58.352 40.909 7.04 0.00 40.55 2.69
474 477 3.320610 TCACCCTCCCAAATGTTTGAA 57.679 42.857 7.04 0.00 40.55 2.69
475 478 3.430453 GATCACCCTCCCAAATGTTTGA 58.570 45.455 7.04 0.00 40.55 2.69
476 479 2.164219 CGATCACCCTCCCAAATGTTTG 59.836 50.000 0.00 0.00 37.90 2.93
477 480 2.041081 TCGATCACCCTCCCAAATGTTT 59.959 45.455 0.00 0.00 0.00 2.83
478 481 1.633432 TCGATCACCCTCCCAAATGTT 59.367 47.619 0.00 0.00 0.00 2.71
479 482 1.065418 GTCGATCACCCTCCCAAATGT 60.065 52.381 0.00 0.00 0.00 2.71
480 483 1.065491 TGTCGATCACCCTCCCAAATG 60.065 52.381 0.00 0.00 0.00 2.32
481 484 1.065418 GTGTCGATCACCCTCCCAAAT 60.065 52.381 6.82 0.00 40.84 2.32
482 485 0.323629 GTGTCGATCACCCTCCCAAA 59.676 55.000 6.82 0.00 40.84 3.28
483 486 1.980052 GTGTCGATCACCCTCCCAA 59.020 57.895 6.82 0.00 40.84 4.12
484 487 3.708210 GTGTCGATCACCCTCCCA 58.292 61.111 6.82 0.00 40.84 4.37
486 489 2.229055 AGTGAGTGTCGATCACCCTCC 61.229 57.143 12.80 3.51 46.68 4.30
487 490 1.133407 GAGTGAGTGTCGATCACCCTC 59.867 57.143 12.80 11.65 46.68 4.30
488 491 1.178276 GAGTGAGTGTCGATCACCCT 58.822 55.000 12.80 7.73 46.68 4.34
489 492 0.888619 TGAGTGAGTGTCGATCACCC 59.111 55.000 12.80 3.51 46.68 4.61
497 500 3.930336 TCATGTGGAATGAGTGAGTGTC 58.070 45.455 0.00 0.00 0.00 3.67
525 528 3.371168 GTTGTTTGCATGTCATTCACGT 58.629 40.909 0.00 0.00 0.00 4.49
533 536 1.268488 TGTCTGCGTTGTTTGCATGTC 60.268 47.619 0.00 0.00 42.32 3.06
551 554 1.226542 CAGCTGGGATCATGGCTGT 59.773 57.895 18.54 0.00 44.69 4.40
589 601 0.668535 AAACCTCGGCTTTTGTCAGC 59.331 50.000 0.00 0.00 39.28 4.26
609 627 1.728323 TCCACCACTCCACATGAAGA 58.272 50.000 0.00 0.00 0.00 2.87
624 642 2.606725 CGAGCACATGATCTTCTTCCAC 59.393 50.000 0.00 0.00 0.00 4.02
674 692 3.430236 GCTTGTTTTGCTAACCAACCACT 60.430 43.478 0.00 0.00 31.97 4.00
733 752 2.737783 TCGTCTCTCTCTCTCACGTTTC 59.262 50.000 0.00 0.00 0.00 2.78
785 807 1.737793 AGCGCACGGAAAATAGAAAGG 59.262 47.619 11.47 0.00 0.00 3.11
811 833 1.477685 GGTGGGGAGAACGTTGAGGA 61.478 60.000 5.00 0.00 0.00 3.71
814 844 0.471211 AGAGGTGGGGAGAACGTTGA 60.471 55.000 5.00 0.00 0.00 3.18
838 868 0.615850 GTATATGAGAGGGCAGGGGC 59.384 60.000 0.00 0.00 40.13 5.80
843 873 0.679505 GTGGCGTATATGAGAGGGCA 59.320 55.000 0.00 0.00 35.23 5.36
1209 1239 5.273208 ACAACAGATGTATACCTCTCCTGT 58.727 41.667 7.62 10.46 41.63 4.00
1254 1289 5.577835 TCATTTGGTCGTGTTTTTCTTCTG 58.422 37.500 0.00 0.00 0.00 3.02
1258 1293 4.582656 TGGATCATTTGGTCGTGTTTTTCT 59.417 37.500 0.00 0.00 0.00 2.52
1259 1294 4.865776 TGGATCATTTGGTCGTGTTTTTC 58.134 39.130 0.00 0.00 0.00 2.29
1327 1367 5.924254 TCTTACTATGATACGCCATTTTCCG 59.076 40.000 0.00 0.00 0.00 4.30
1367 1413 9.944376 GAGAATGGGCATATAATAACAGAGTAA 57.056 33.333 0.00 0.00 0.00 2.24
1370 1416 7.628234 AGGAGAATGGGCATATAATAACAGAG 58.372 38.462 0.00 0.00 0.00 3.35
1418 1464 1.187567 GCCCTGTTTCTGCCCAATGT 61.188 55.000 0.00 0.00 0.00 2.71
1482 1533 8.066612 AGTAACATTTATTGGGACCAATGAAG 57.933 34.615 23.30 16.72 45.15 3.02
1584 1642 4.944962 TTATTGACAGCGATGGTTTGAG 57.055 40.909 5.32 0.00 0.00 3.02
1585 1643 5.895636 ATTTATTGACAGCGATGGTTTGA 57.104 34.783 5.32 0.00 0.00 2.69
1586 1644 6.324819 AGAATTTATTGACAGCGATGGTTTG 58.675 36.000 5.32 0.00 0.00 2.93
1587 1645 6.515272 AGAATTTATTGACAGCGATGGTTT 57.485 33.333 5.32 0.00 0.00 3.27
1667 1725 6.404708 GGCTCACATATCTACACATCATCAT 58.595 40.000 0.00 0.00 0.00 2.45
1668 1726 5.279657 GGGCTCACATATCTACACATCATCA 60.280 44.000 0.00 0.00 0.00 3.07
1669 1727 5.174395 GGGCTCACATATCTACACATCATC 58.826 45.833 0.00 0.00 0.00 2.92
1699 1757 4.685030 GCCAGGTGGACGATAGGATTTAAA 60.685 45.833 0.00 0.00 37.39 1.52
1736 1794 3.304928 GCAGCTTGCACTATCACAGTTTT 60.305 43.478 0.00 0.00 44.26 2.43
1779 1837 5.105756 GGATTGCAAATAGTACAAGGTGCTT 60.106 40.000 1.71 2.04 33.19 3.91
1786 1844 4.599041 AGCCAGGATTGCAAATAGTACAA 58.401 39.130 1.71 0.00 0.00 2.41
1791 1849 6.263842 TCATTTAGAGCCAGGATTGCAAATAG 59.736 38.462 1.71 0.00 0.00 1.73
1792 1850 6.128486 TCATTTAGAGCCAGGATTGCAAATA 58.872 36.000 1.71 0.00 0.00 1.40
1793 1851 4.957954 TCATTTAGAGCCAGGATTGCAAAT 59.042 37.500 1.71 0.00 0.00 2.32
1801 1859 2.027192 AGCGTTTCATTTAGAGCCAGGA 60.027 45.455 0.00 0.00 0.00 3.86
1905 1966 7.872881 ACAGAATAATCTATGCATGAGCAAAG 58.127 34.615 10.16 0.00 44.26 2.77
1928 1989 9.243637 GCAACTATTTTTCTGTAAACATCAACA 57.756 29.630 0.00 0.00 0.00 3.33
2030 2091 5.121811 AGCTGATTGACTAAGCCATGTTAG 58.878 41.667 2.39 2.39 37.68 2.34
2058 2120 0.814457 TGGTGAAACTGGCAACACAC 59.186 50.000 12.94 9.44 46.17 3.82
2060 2122 0.249031 GCTGGTGAAACTGGCAACAC 60.249 55.000 0.00 0.00 46.17 3.32
2064 2126 2.284754 TTATGCTGGTGAAACTGGCA 57.715 45.000 0.00 0.00 44.58 4.92
2287 2350 2.916716 GTTTGCAAATACATGGTGCTCG 59.083 45.455 16.21 0.00 39.09 5.03
2291 2354 3.587923 CCAGGTTTGCAAATACATGGTG 58.412 45.455 21.38 10.26 40.38 4.17
2597 2694 9.613428 AACCAAAATATCGAGAATTGATGTAGA 57.387 29.630 9.68 0.00 40.17 2.59
2894 2991 5.415701 GCAGATGTTTCCATAAAGAAGGTGA 59.584 40.000 0.00 0.00 0.00 4.02
2937 3034 1.153939 CTCAGTGAAGGCGGTCTCG 60.154 63.158 0.00 0.00 39.81 4.04
3153 3250 8.470040 ACAAAAATGATGTCATATTTGCAGTC 57.530 30.769 0.00 0.00 35.10 3.51
3171 3268 5.454966 ACAACCAGGTTAGGAGACAAAAAT 58.545 37.500 3.89 0.00 0.00 1.82
3178 3275 2.808933 CGCAAACAACCAGGTTAGGAGA 60.809 50.000 3.89 0.00 0.00 3.71
3403 3500 1.051812 ATGAACCATAGCTCCCTCCG 58.948 55.000 0.00 0.00 0.00 4.63
3404 3501 3.648545 AGTAATGAACCATAGCTCCCTCC 59.351 47.826 0.00 0.00 0.00 4.30
3405 3502 4.965200 AGTAATGAACCATAGCTCCCTC 57.035 45.455 0.00 0.00 0.00 4.30
3406 3503 4.971924 AGAAGTAATGAACCATAGCTCCCT 59.028 41.667 0.00 0.00 0.00 4.20
3467 3564 9.860650 ACAGAAGATACAGTATAATCTCTGAGT 57.139 33.333 18.69 7.96 34.71 3.41
3525 3622 3.895232 CTGGCTACCAGTTACAGATGT 57.105 47.619 5.43 0.00 45.82 3.06
3547 3644 7.552687 CACACAGTATAACCATGTAAACCTCAT 59.447 37.037 0.00 0.00 0.00 2.90
3549 3646 6.877322 ACACACAGTATAACCATGTAAACCTC 59.123 38.462 0.00 0.00 0.00 3.85
3551 3648 8.726870 ATACACACAGTATAACCATGTAAACC 57.273 34.615 0.00 0.00 41.59 3.27
3552 3649 9.595823 AGATACACACAGTATAACCATGTAAAC 57.404 33.333 0.00 0.00 43.39 2.01
3555 3652 8.418662 GGAAGATACACACAGTATAACCATGTA 58.581 37.037 0.00 0.00 43.39 2.29
3556 3653 7.125811 AGGAAGATACACACAGTATAACCATGT 59.874 37.037 0.00 0.00 43.39 3.21
3557 3654 7.500992 AGGAAGATACACACAGTATAACCATG 58.499 38.462 0.00 0.00 43.39 3.66
3560 3657 6.985059 GGAAGGAAGATACACACAGTATAACC 59.015 42.308 0.00 0.00 43.39 2.85
3561 3658 6.985059 GGGAAGGAAGATACACACAGTATAAC 59.015 42.308 0.00 0.00 43.39 1.89
3562 3659 6.670464 TGGGAAGGAAGATACACACAGTATAA 59.330 38.462 0.00 0.00 43.39 0.98
3563 3660 6.199376 TGGGAAGGAAGATACACACAGTATA 58.801 40.000 0.00 0.00 43.39 1.47
3564 3661 5.030147 TGGGAAGGAAGATACACACAGTAT 58.970 41.667 0.00 0.00 45.98 2.12
3565 3662 4.422057 TGGGAAGGAAGATACACACAGTA 58.578 43.478 0.00 0.00 37.06 2.74
3566 3663 3.248024 TGGGAAGGAAGATACACACAGT 58.752 45.455 0.00 0.00 0.00 3.55
3567 3664 3.515502 TCTGGGAAGGAAGATACACACAG 59.484 47.826 0.00 0.00 0.00 3.66
3568 3665 3.516586 TCTGGGAAGGAAGATACACACA 58.483 45.455 0.00 0.00 0.00 3.72
3569 3666 4.080863 ACATCTGGGAAGGAAGATACACAC 60.081 45.833 0.00 0.00 31.87 3.82
3640 3737 7.461749 ACTACAGGCATAAAATGGTAGCATAT 58.538 34.615 8.04 3.21 33.33 1.78
3661 3923 6.910536 AAACAGCAGCATAGTGAATACTAC 57.089 37.500 0.00 0.00 41.92 2.73
3754 4017 2.525105 TAAATGGAAGGGGTTGCCTC 57.475 50.000 0.00 0.00 0.00 4.70
3757 4020 6.294361 AGTAAAATAAATGGAAGGGGTTGC 57.706 37.500 0.00 0.00 0.00 4.17
3771 4035 9.841295 ATAATACCCTGCGAGAAAGTAAAATAA 57.159 29.630 0.00 0.00 0.00 1.40
3786 4050 5.897377 AACAAAGTCACATAATACCCTGC 57.103 39.130 0.00 0.00 0.00 4.85
3788 4052 9.886132 CTAGTTAACAAAGTCACATAATACCCT 57.114 33.333 8.61 0.00 0.00 4.34
3819 4083 6.573664 TGCTTACACACAAGAGCAAATAAT 57.426 33.333 0.00 0.00 41.72 1.28
3830 4094 6.164417 TCTAGGTAGTTTGCTTACACACAA 57.836 37.500 0.00 0.00 0.00 3.33
3831 4095 5.794726 TCTAGGTAGTTTGCTTACACACA 57.205 39.130 0.00 0.00 0.00 3.72
3839 4103 5.145513 ACCCTCTATCTAGGTAGTTTGCT 57.854 43.478 9.88 0.00 34.56 3.91
3972 4239 4.719773 TGCTGGTGTACTAGGAATTACCAT 59.280 41.667 7.29 0.00 42.04 3.55
3990 4257 6.480981 GGATCCAATACAATGAAATTTGCTGG 59.519 38.462 6.95 0.00 31.22 4.85
4022 4310 3.548770 ACCATTGTCTGCATACCATCAG 58.451 45.455 0.00 0.00 0.00 2.90
4039 4327 6.721208 ACTATTCATTTGAAGACACCAACCAT 59.279 34.615 0.00 0.00 37.48 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.