Multiple sequence alignment - TraesCS5B01G179500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G179500 chr5B 100.000 5331 0 0 1 5331 327195504 327200834 0.000000e+00 9845.0
1 TraesCS5B01G179500 chr5B 89.316 2602 216 40 2780 5331 327441154 327443743 0.000000e+00 3208.0
2 TraesCS5B01G179500 chr5B 91.496 2152 125 26 679 2784 327438958 327441097 0.000000e+00 2907.0
3 TraesCS5B01G179500 chr5B 88.987 1589 153 18 2783 4361 327446197 327447773 0.000000e+00 1945.0
4 TraesCS5B01G179500 chr5B 86.851 1559 171 18 2779 4327 327258739 327260273 0.000000e+00 1712.0
5 TraesCS5B01G179500 chr5B 86.541 691 68 12 7 683 470218273 470218952 0.000000e+00 737.0
6 TraesCS5B01G179500 chr5B 82.998 447 60 12 4901 5331 327434274 327434720 1.800000e-104 390.0
7 TraesCS5B01G179500 chr5B 86.957 322 38 3 4791 5109 327260360 327260680 5.080000e-95 359.0
8 TraesCS5B01G179500 chr5D 91.584 1913 134 19 2780 4672 288154557 288156462 0.000000e+00 2615.0
9 TraesCS5B01G179500 chr5D 90.855 1684 125 22 2783 4455 288136728 288138393 0.000000e+00 2230.0
10 TraesCS5B01G179500 chr5D 85.123 1257 133 25 1573 2784 288153254 288154501 0.000000e+00 1236.0
11 TraesCS5B01G179500 chr5D 90.460 891 51 12 679 1561 288152347 288153211 0.000000e+00 1144.0
12 TraesCS5B01G179500 chr5D 93.076 751 45 3 679 1424 288133992 288134740 0.000000e+00 1092.0
13 TraesCS5B01G179500 chr5D 90.363 716 58 7 1573 2285 288134980 288135687 0.000000e+00 929.0
14 TraesCS5B01G179500 chr5D 85.438 879 105 19 4470 5329 288148921 288149795 0.000000e+00 893.0
15 TraesCS5B01G179500 chr5D 87.796 549 53 9 4791 5331 288156842 288157384 9.740000e-177 630.0
16 TraesCS5B01G179500 chr5D 85.451 543 61 9 4791 5325 288086518 288087050 2.810000e-152 549.0
17 TraesCS5B01G179500 chr5D 83.664 453 55 12 2315 2762 288135686 288136124 4.970000e-110 409.0
18 TraesCS5B01G179500 chr5A 89.852 1685 140 22 2783 4455 380805302 380806967 0.000000e+00 2135.0
19 TraesCS5B01G179500 chr5A 88.401 1595 156 20 2783 4361 380832313 380833894 0.000000e+00 1893.0
20 TraesCS5B01G179500 chr5A 86.059 1657 123 55 807 2388 380823750 380825373 0.000000e+00 1681.0
21 TraesCS5B01G179500 chr5A 93.979 681 39 2 2780 3458 380825896 380826576 0.000000e+00 1029.0
22 TraesCS5B01G179500 chr5A 91.007 745 56 8 3451 4191 380826989 380827726 0.000000e+00 994.0
23 TraesCS5B01G179500 chr5A 89.804 716 62 7 1573 2285 380794944 380795651 0.000000e+00 907.0
24 TraesCS5B01G179500 chr5A 87.546 546 58 8 4791 5328 380833970 380834513 1.630000e-174 623.0
25 TraesCS5B01G179500 chr5A 91.807 415 32 2 1010 1424 380794257 380794669 1.290000e-160 577.0
26 TraesCS5B01G179500 chr5A 87.008 508 55 9 4835 5331 380821335 380821842 3.600000e-156 562.0
27 TraesCS5B01G179500 chr5A 83.850 452 56 8 2315 2758 380795652 380796094 1.070000e-111 414.0
28 TraesCS5B01G179500 chr5A 84.463 354 47 5 2436 2784 380825490 380825840 5.110000e-90 342.0
29 TraesCS5B01G179500 chr5A 84.133 271 36 6 4565 4832 380815536 380815802 6.850000e-64 255.0
30 TraesCS5B01G179500 chr5A 93.671 158 10 0 810 967 380794103 380794260 2.480000e-58 237.0
31 TraesCS5B01G179500 chr5A 89.474 76 2 1 741 810 380790481 380790556 2.040000e-14 91.6
32 TraesCS5B01G179500 chr6B 90.701 699 48 7 1 683 81982082 81982779 0.000000e+00 915.0
33 TraesCS5B01G179500 chr6B 86.842 684 73 13 1 680 113986899 113987569 0.000000e+00 749.0
34 TraesCS5B01G179500 chr6B 79.670 182 26 8 4477 4653 412199121 412198946 2.610000e-23 121.0
35 TraesCS5B01G179500 chr2B 90.115 698 54 5 1 683 636459803 636459106 0.000000e+00 893.0
36 TraesCS5B01G179500 chr2B 88.499 713 51 9 1 682 488004663 488003951 0.000000e+00 833.0
37 TraesCS5B01G179500 chr2B 84.529 711 68 17 1 680 456033405 456034104 0.000000e+00 665.0
38 TraesCS5B01G179500 chr2B 90.154 518 40 6 174 683 612692317 612691803 0.000000e+00 664.0
39 TraesCS5B01G179500 chr3B 90.202 694 52 6 4 683 61876241 61875550 0.000000e+00 891.0
40 TraesCS5B01G179500 chr1D 89.872 701 47 10 1 679 80888339 80887641 0.000000e+00 880.0
41 TraesCS5B01G179500 chr7A 89.840 689 54 5 2 676 63380529 63379843 0.000000e+00 870.0
42 TraesCS5B01G179500 chr7A 86.163 701 67 18 1 683 141902658 141901970 0.000000e+00 730.0
43 TraesCS5B01G179500 chr4D 88.698 699 40 9 6 676 48682905 48682218 0.000000e+00 817.0
44 TraesCS5B01G179500 chr3D 88.244 689 51 8 7 679 113912327 113911653 0.000000e+00 797.0
45 TraesCS5B01G179500 chr1B 87.606 710 55 11 1 683 192469093 192468390 0.000000e+00 793.0
46 TraesCS5B01G179500 chr2D 85.286 700 75 13 1 683 469162885 469163573 0.000000e+00 697.0
47 TraesCS5B01G179500 chr2A 84.165 701 74 13 1 682 779812886 779813568 0.000000e+00 645.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G179500 chr5B 327195504 327200834 5330 False 9845.000000 9845 100.0000 1 5331 1 chr5B.!!$F1 5330
1 TraesCS5B01G179500 chr5B 327438958 327447773 8815 False 2686.666667 3208 89.9330 679 5331 3 chr5B.!!$F5 4652
2 TraesCS5B01G179500 chr5B 327258739 327260680 1941 False 1035.500000 1712 86.9040 2779 5109 2 chr5B.!!$F4 2330
3 TraesCS5B01G179500 chr5B 470218273 470218952 679 False 737.000000 737 86.5410 7 683 1 chr5B.!!$F3 676
4 TraesCS5B01G179500 chr5D 288148921 288157384 8463 False 1303.600000 2615 88.0802 679 5331 5 chr5D.!!$F3 4652
5 TraesCS5B01G179500 chr5D 288133992 288138393 4401 False 1165.000000 2230 89.4895 679 4455 4 chr5D.!!$F2 3776
6 TraesCS5B01G179500 chr5D 288086518 288087050 532 False 549.000000 549 85.4510 4791 5325 1 chr5D.!!$F1 534
7 TraesCS5B01G179500 chr5A 380805302 380806967 1665 False 2135.000000 2135 89.8520 2783 4455 1 chr5A.!!$F1 1672
8 TraesCS5B01G179500 chr5A 380832313 380834513 2200 False 1258.000000 1893 87.9735 2783 5328 2 chr5A.!!$F5 2545
9 TraesCS5B01G179500 chr5A 380821335 380827726 6391 False 921.600000 1681 88.5032 807 5331 5 chr5A.!!$F4 4524
10 TraesCS5B01G179500 chr5A 380790481 380796094 5613 False 445.320000 907 89.7212 741 2758 5 chr5A.!!$F3 2017
11 TraesCS5B01G179500 chr6B 81982082 81982779 697 False 915.000000 915 90.7010 1 683 1 chr6B.!!$F1 682
12 TraesCS5B01G179500 chr6B 113986899 113987569 670 False 749.000000 749 86.8420 1 680 1 chr6B.!!$F2 679
13 TraesCS5B01G179500 chr2B 636459106 636459803 697 True 893.000000 893 90.1150 1 683 1 chr2B.!!$R3 682
14 TraesCS5B01G179500 chr2B 488003951 488004663 712 True 833.000000 833 88.4990 1 682 1 chr2B.!!$R1 681
15 TraesCS5B01G179500 chr2B 456033405 456034104 699 False 665.000000 665 84.5290 1 680 1 chr2B.!!$F1 679
16 TraesCS5B01G179500 chr2B 612691803 612692317 514 True 664.000000 664 90.1540 174 683 1 chr2B.!!$R2 509
17 TraesCS5B01G179500 chr3B 61875550 61876241 691 True 891.000000 891 90.2020 4 683 1 chr3B.!!$R1 679
18 TraesCS5B01G179500 chr1D 80887641 80888339 698 True 880.000000 880 89.8720 1 679 1 chr1D.!!$R1 678
19 TraesCS5B01G179500 chr7A 63379843 63380529 686 True 870.000000 870 89.8400 2 676 1 chr7A.!!$R1 674
20 TraesCS5B01G179500 chr7A 141901970 141902658 688 True 730.000000 730 86.1630 1 683 1 chr7A.!!$R2 682
21 TraesCS5B01G179500 chr4D 48682218 48682905 687 True 817.000000 817 88.6980 6 676 1 chr4D.!!$R1 670
22 TraesCS5B01G179500 chr3D 113911653 113912327 674 True 797.000000 797 88.2440 7 679 1 chr3D.!!$R1 672
23 TraesCS5B01G179500 chr1B 192468390 192469093 703 True 793.000000 793 87.6060 1 683 1 chr1B.!!$R1 682
24 TraesCS5B01G179500 chr2D 469162885 469163573 688 False 697.000000 697 85.2860 1 683 1 chr2D.!!$F1 682
25 TraesCS5B01G179500 chr2A 779812886 779813568 682 False 645.000000 645 84.1650 1 682 1 chr2A.!!$F1 681

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
220 223 0.598065 GTTGGCATTGAGGTGGTCAC 59.402 55.0 0.00 0.00 33.71 3.67 F
697 3446 0.749649 CCTAGCCTCGCACATCTCTT 59.250 55.0 0.00 0.00 0.00 2.85 F
1244 8995 0.758123 GGATCAAGGAGGAGGCTCTG 59.242 60.0 15.23 4.33 0.00 3.35 F
2570 10570 0.184933 TGTGGAGGGTTTTGGGTGAG 59.815 55.0 0.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2169 10068 0.968405 GCCCAGCCAACATTTCTTCA 59.032 50.000 0.00 0.00 0.00 3.02 R
2570 10570 0.395448 AGCGTCCTCCTAGTACACCC 60.395 60.000 0.00 0.00 0.00 4.61 R
3154 11750 0.524816 CCATCAAGATGCAGCGCAAC 60.525 55.000 11.47 0.21 43.62 4.17 R
4468 13523 1.414919 GTCATAGGAACCATACCGGCA 59.585 52.381 0.00 0.00 39.03 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
220 223 0.598065 GTTGGCATTGAGGTGGTCAC 59.402 55.000 0.00 0.00 33.71 3.67
233 236 2.258726 GGTCACCAAGTGCGGGAAC 61.259 63.158 0.00 0.00 32.98 3.62
236 239 2.674563 TCACCAAGTGCGGGAACCAG 62.675 60.000 0.00 0.00 39.87 4.00
543 595 1.122227 ATGCAAGCAACCAAACACCT 58.878 45.000 0.00 0.00 0.00 4.00
586 656 3.119280 ACAGGCAACCAAACAACTTGTAC 60.119 43.478 0.00 0.00 32.65 2.90
589 659 4.890581 AGGCAACCAAACAACTTGTACATA 59.109 37.500 0.00 0.00 32.65 2.29
635 705 1.346068 GACAGGCTGAGTTGAGAAGGT 59.654 52.381 23.66 0.00 0.00 3.50
664 737 3.021695 TGCAGCTAATGTAGACTACGGT 58.978 45.455 8.09 1.14 0.00 4.83
697 3446 0.749649 CCTAGCCTCGCACATCTCTT 59.250 55.000 0.00 0.00 0.00 2.85
703 3452 1.391485 CCTCGCACATCTCTTTGAACG 59.609 52.381 0.00 0.00 0.00 3.95
706 3455 1.463034 CGCACATCTCTTTGAACGCAG 60.463 52.381 0.00 0.00 0.00 5.18
714 3463 2.964924 CTTTGAACGCAGCGCAACGT 62.965 55.000 20.08 20.08 46.07 3.99
732 3481 1.002468 CGTTTCTTCCTGCAGTTGTGG 60.002 52.381 13.81 0.00 0.00 4.17
750 3499 2.434331 CCCCACAGCCTTTTCGGA 59.566 61.111 0.00 0.00 33.16 4.55
794 3549 1.551883 ACCATACCCTTGTACGTGACC 59.448 52.381 0.00 0.00 0.00 4.02
810 3565 1.343789 TGACCACACGTTATCCGGAAA 59.656 47.619 9.01 0.99 42.24 3.13
828 8573 3.454375 GAAAGTGGAAACTGACGTCAGA 58.546 45.455 43.55 23.71 46.59 3.27
1013 8764 4.094646 ATCCATGGACGCGGTGCA 62.095 61.111 18.99 8.29 38.41 4.57
1237 8988 2.768344 GGGGCGGATCAAGGAGGA 60.768 66.667 0.00 0.00 0.00 3.71
1244 8995 0.758123 GGATCAAGGAGGAGGCTCTG 59.242 60.000 15.23 4.33 0.00 3.35
1298 9049 1.484240 GCTCTACTTGCAGGACCTCAT 59.516 52.381 1.40 0.00 0.00 2.90
1351 9102 1.482182 TCTACATCGGCAATGCAGTCT 59.518 47.619 7.79 0.00 39.12 3.24
1398 9149 8.150945 TCATCAGTAAGCTAAAGAGACAAAGTT 58.849 33.333 0.00 0.00 0.00 2.66
1468 9291 7.962918 CAGATCCGTCTTCGTTTTCAATTTTAT 59.037 33.333 0.00 0.00 35.01 1.40
1469 9292 9.158233 AGATCCGTCTTCGTTTTCAATTTTATA 57.842 29.630 0.00 0.00 35.01 0.98
1493 9320 3.121030 CCTTCCTGCGGCACTTCG 61.121 66.667 0.00 0.00 0.00 3.79
1505 9332 1.068055 GGCACTTCGTCTTTCGTCCTA 60.068 52.381 0.00 0.00 40.80 2.94
1578 9465 4.927267 TTCCATTCTACCAAGTGGACAT 57.073 40.909 3.83 0.00 40.27 3.06
1596 9483 4.867047 GGACATATCATAGTTGATCCGCTG 59.133 45.833 0.00 0.00 41.73 5.18
1743 9636 8.805688 GCAGATCAATTATTTTTCTCTTTGAGC 58.194 33.333 0.00 0.00 31.56 4.26
1949 9847 8.160765 TGAAGGATTACACATTTTTACAGAGGA 58.839 33.333 0.00 0.00 0.00 3.71
2038 9936 7.377131 GCAGAATTTGTGAGAAGAACAGTTTAC 59.623 37.037 0.00 0.00 0.00 2.01
2091 9989 9.701098 AATTAATGCTATTTCCATGTGCAATAG 57.299 29.630 0.00 9.76 37.20 1.73
2103 10001 8.158169 TCCATGTGCAATAGAAGTGATATTTC 57.842 34.615 0.00 0.00 0.00 2.17
2123 10022 9.846248 ATATTTCTTGTAACTTGCAAATCTGAC 57.154 29.630 0.00 0.00 0.00 3.51
2130 10029 5.940192 AACTTGCAAATCTGACGTAATGA 57.060 34.783 0.00 0.00 0.00 2.57
2141 10040 7.672983 ATCTGACGTAATGAATCACTTTTGT 57.327 32.000 0.00 0.00 0.00 2.83
2169 10068 5.184864 TGACATTTGTTTGTTTCAGGTCACT 59.815 36.000 0.00 0.00 0.00 3.41
2226 10126 4.341520 GGAGTCGTATGTCTAATTCCCACT 59.658 45.833 0.00 0.00 0.00 4.00
2230 10130 6.154706 AGTCGTATGTCTAATTCCCACTCTTT 59.845 38.462 0.00 0.00 0.00 2.52
2320 10246 9.502091 GAATACAAGATTATGTGGGTTATGCTA 57.498 33.333 0.00 0.00 34.75 3.49
2333 10259 5.245977 TGGGTTATGCTATTCATCGATCAGA 59.754 40.000 0.00 0.00 36.63 3.27
2341 10267 5.868258 GCTATTCATCGATCAGATCACATGT 59.132 40.000 11.12 0.00 37.52 3.21
2377 10303 4.207841 GCAAAAAGTTCAGATGCTTGACAC 59.792 41.667 0.00 0.00 34.29 3.67
2388 10314 1.814394 TGCTTGACACATTGATGGCTC 59.186 47.619 0.00 0.00 0.00 4.70
2525 10525 7.664318 TCATATATGGAACTCGTAGCTTGTAGA 59.336 37.037 12.78 0.00 0.00 2.59
2531 10531 5.221087 GGAACTCGTAGCTTGTAGATAGCTT 60.221 44.000 2.39 0.00 46.42 3.74
2557 10557 8.918116 TGCTATATCTAGGCTTATATTGTGGAG 58.082 37.037 0.00 0.00 0.00 3.86
2559 10559 7.682787 ATATCTAGGCTTATATTGTGGAGGG 57.317 40.000 0.00 0.00 0.00 4.30
2565 10565 4.099419 GGCTTATATTGTGGAGGGTTTTGG 59.901 45.833 0.00 0.00 0.00 3.28
2570 10570 0.184933 TGTGGAGGGTTTTGGGTGAG 59.815 55.000 0.00 0.00 0.00 3.51
2578 10578 1.144298 GGTTTTGGGTGAGGGTGTACT 59.856 52.381 0.00 0.00 0.00 2.73
2579 10579 2.372837 GGTTTTGGGTGAGGGTGTACTA 59.627 50.000 0.00 0.00 0.00 1.82
2581 10581 1.946984 TTGGGTGAGGGTGTACTAGG 58.053 55.000 0.00 0.00 0.00 3.02
2586 10586 2.377073 GTGAGGGTGTACTAGGAGGAC 58.623 57.143 0.00 0.00 0.00 3.85
2592 10592 3.019564 GGTGTACTAGGAGGACGCTTTA 58.980 50.000 2.59 0.00 0.00 1.85
2629 10629 2.010145 TGTGCGAGCTGAAATAGACC 57.990 50.000 0.00 0.00 0.00 3.85
2647 10647 2.100631 CGGTGAACTCGATGTGGCC 61.101 63.158 0.00 0.00 0.00 5.36
2652 10652 1.811965 TGAACTCGATGTGGCCAATTG 59.188 47.619 7.24 7.90 0.00 2.32
2658 10658 2.164017 TCGATGTGGCCAATTGTGATTG 59.836 45.455 7.24 0.00 41.87 2.67
2660 10660 3.514645 GATGTGGCCAATTGTGATTGAC 58.485 45.455 7.24 0.00 44.37 3.18
2661 10661 1.269174 TGTGGCCAATTGTGATTGACG 59.731 47.619 7.24 0.00 44.37 4.35
2662 10662 1.539388 GTGGCCAATTGTGATTGACGA 59.461 47.619 7.24 0.00 44.37 4.20
2665 10665 3.068732 TGGCCAATTGTGATTGACGAAAA 59.931 39.130 0.61 0.00 44.37 2.29
2691 10693 8.687824 AAAATCATTTTATGTGTGGATTCGTC 57.312 30.769 0.00 0.00 0.00 4.20
2699 10703 1.749258 GTGGATTCGTCTTGGGGGC 60.749 63.158 0.00 0.00 0.00 5.80
2759 10763 7.197071 AGCACAATAGTTTTTCACGTTATCA 57.803 32.000 0.00 0.00 0.00 2.15
2846 11437 8.213518 TCTTCCTATTTTCATGCAGTTATGTC 57.786 34.615 0.00 0.00 0.00 3.06
2895 11488 1.133915 GTTCCCTTCTCCACCACACAA 60.134 52.381 0.00 0.00 0.00 3.33
2931 11525 9.758651 TGTAAGTGCTATGTACCATTACATAAG 57.241 33.333 6.10 3.02 46.17 1.73
2936 11530 9.214957 GTGCTATGTACCATTACATAAGCAATA 57.785 33.333 19.28 6.04 46.17 1.90
3073 11669 7.806487 CACCATATCACATGCTCAAATATTGAC 59.194 37.037 0.00 0.00 35.46 3.18
3105 11701 9.230122 TCAAAAATCACTATAGAATGCAGTTCA 57.770 29.630 6.78 0.00 39.39 3.18
3106 11702 9.282247 CAAAAATCACTATAGAATGCAGTTCAC 57.718 33.333 6.78 0.00 39.39 3.18
3130 11726 8.519526 CACAAATAAGACCTAAAGCCAACATTA 58.480 33.333 0.00 0.00 0.00 1.90
3154 11750 4.022589 ACACATTTTCAGAGGATGCAGTTG 60.023 41.667 0.00 0.00 0.00 3.16
3206 11802 1.272536 ACTTCGCCCTCTGAAGGTAGA 60.273 52.381 7.54 0.00 45.59 2.59
3242 11838 1.597742 ATCGCGCCTATCAAGCATTT 58.402 45.000 0.00 0.00 0.00 2.32
3362 11965 4.717877 TGCAGTCTGAAGATGAAAAGGAA 58.282 39.130 3.32 0.00 0.00 3.36
3389 11992 5.874810 GTCTTCAAGGACAGTATATTGCACA 59.125 40.000 0.00 0.00 36.35 4.57
3407 12010 8.651391 ATTGCACAAATATTGAACATATGGTG 57.349 30.769 7.80 2.69 0.00 4.17
3490 12515 9.914834 TTAAATTTTACATATAGGTCACTGCCT 57.085 29.630 0.00 0.00 42.43 4.75
3534 12559 4.273480 CAGACATATTTTGGCTCGGTTAGG 59.727 45.833 0.00 0.00 40.98 2.69
3783 12819 7.903145 TGCTATAATTATGTGTATCCGTCCTT 58.097 34.615 8.28 0.00 0.00 3.36
3821 12857 1.507562 TCGCACTTGTATGTGTGTGG 58.492 50.000 10.11 0.00 45.48 4.17
4064 13102 6.814644 CCAGAATGTTTATTTGTCATGCATGT 59.185 34.615 25.43 9.20 0.00 3.21
4128 13168 6.866480 ACTTTCATTTATGTGCATTACAGGG 58.134 36.000 0.00 0.00 43.80 4.45
4197 13237 4.105377 AGGCCTTGCTATCAGGTTTGATAT 59.895 41.667 0.00 0.00 43.48 1.63
4249 13289 9.202273 GCATGTTGACAAGACCAAATAATTTTA 57.798 29.630 0.00 0.00 0.00 1.52
4305 13345 2.816087 CACCAATCAGGACAACCTTCAG 59.184 50.000 0.00 0.00 45.36 3.02
4383 13436 8.830915 AGAGAATGAGGTGTTTTATCTAGAGA 57.169 34.615 0.00 0.00 0.00 3.10
4390 13443 7.016268 TGAGGTGTTTTATCTAGAGACCAACTT 59.984 37.037 0.00 0.00 0.00 2.66
4391 13444 7.387643 AGGTGTTTTATCTAGAGACCAACTTC 58.612 38.462 0.00 0.00 0.00 3.01
4393 13446 7.878644 GGTGTTTTATCTAGAGACCAACTTCTT 59.121 37.037 0.00 0.00 0.00 2.52
4496 13551 6.357367 GGTATGGTTCCTATGACATGTTTCT 58.643 40.000 0.00 0.00 0.00 2.52
4511 13566 9.288576 TGACATGTTTCTCTGAATTTCTAATGT 57.711 29.630 0.00 0.00 0.00 2.71
4519 13574 7.223584 TCTCTGAATTTCTAATGTGGTGAACA 58.776 34.615 0.00 0.00 44.79 3.18
4599 13655 8.905702 CAACATAAAACACAAGCTATCTCAAAC 58.094 33.333 0.00 0.00 0.00 2.93
4611 13667 5.536538 AGCTATCTCAAACAGATCGACCATA 59.463 40.000 0.00 0.00 41.39 2.74
4660 13716 6.935741 TTGTAGCAAGAACACTATTGTTGT 57.064 33.333 2.81 0.00 46.43 3.32
4665 13721 6.902341 AGCAAGAACACTATTGTTGTACATG 58.098 36.000 2.81 0.00 46.43 3.21
4668 13724 7.113404 GCAAGAACACTATTGTTGTACATGTTG 59.887 37.037 12.21 3.18 46.43 3.33
4686 13742 4.619973 TGTTGACCATTTGACATGAAAGC 58.380 39.130 0.00 0.00 0.00 3.51
4688 13744 2.562298 TGACCATTTGACATGAAAGCCC 59.438 45.455 0.00 0.00 0.00 5.19
4694 13750 0.911769 TGACATGAAAGCCCCGATCT 59.088 50.000 0.00 0.00 0.00 2.75
4696 13752 0.911769 ACATGAAAGCCCCGATCTCA 59.088 50.000 0.00 0.00 0.00 3.27
4707 13763 3.748568 GCCCCGATCTCAACTTGATATTC 59.251 47.826 0.00 0.00 0.00 1.75
4714 13770 6.566079 ATCTCAACTTGATATTCTCCACCA 57.434 37.500 0.00 0.00 0.00 4.17
4716 13772 6.962182 TCTCAACTTGATATTCTCCACCATT 58.038 36.000 0.00 0.00 0.00 3.16
4717 13773 7.405292 TCTCAACTTGATATTCTCCACCATTT 58.595 34.615 0.00 0.00 0.00 2.32
4718 13774 7.337689 TCTCAACTTGATATTCTCCACCATTTG 59.662 37.037 0.00 0.00 0.00 2.32
4719 13775 6.947733 TCAACTTGATATTCTCCACCATTTGT 59.052 34.615 0.00 0.00 0.00 2.83
4725 13781 1.619654 TCTCCACCATTTGTTGCTGG 58.380 50.000 0.00 0.00 38.55 4.85
4784 14092 1.492993 AAGGTGTGGGGAAGAGCTCC 61.493 60.000 10.93 0.00 44.54 4.70
4832 14152 3.118038 TGTTCTTTAGGGCAGACACAACT 60.118 43.478 0.00 0.00 0.00 3.16
4833 14153 3.126001 TCTTTAGGGCAGACACAACTG 57.874 47.619 0.00 0.00 40.43 3.16
4898 14218 0.249868 CCGGCGAGCTTATCAATCCA 60.250 55.000 9.30 0.00 0.00 3.41
4918 14238 3.314357 CCATCCAAGTGTAGCATCATGTG 59.686 47.826 0.00 0.00 0.00 3.21
4927 14247 0.994247 AGCATCATGTGTGGGAAGGA 59.006 50.000 0.00 0.00 0.00 3.36
4930 14250 2.636830 CATCATGTGTGGGAAGGACTC 58.363 52.381 0.00 0.00 0.00 3.36
4931 14251 0.984230 TCATGTGTGGGAAGGACTCC 59.016 55.000 0.00 0.00 44.54 3.85
5001 14323 8.519799 TGACAACTTTTGAGGAGAAATACTTT 57.480 30.769 0.00 0.00 0.00 2.66
5005 14327 5.833131 ACTTTTGAGGAGAAATACTTTGGCA 59.167 36.000 0.00 0.00 0.00 4.92
5026 14348 1.376037 CCAACTCTGGAAGGGCGAC 60.376 63.158 0.00 0.00 46.92 5.19
5050 14372 7.010160 ACTGTTGAGAGGGAAATTCCAAAATA 58.990 34.615 14.68 0.00 38.64 1.40
5065 14388 4.335315 TCCAAAATATCCAAGTGCGCTAAG 59.665 41.667 9.73 0.00 0.00 2.18
5157 14481 7.936847 TGCACTAACCATTCCAACCTATATTAG 59.063 37.037 0.00 0.00 0.00 1.73
5215 14539 9.566432 GGTAATCTCAATAGAATGGTTCAGAAT 57.434 33.333 0.00 0.00 34.73 2.40
5262 14587 2.414806 GAGGAAAACTCACCGGAAGTC 58.585 52.381 9.46 0.00 45.85 3.01
5263 14588 1.766496 AGGAAAACTCACCGGAAGTCA 59.234 47.619 9.46 0.00 0.00 3.41
5295 14620 3.753815 TCATGGTGCACAAGATGAAAGA 58.246 40.909 20.43 0.07 0.00 2.52
5303 14628 3.424703 CACAAGATGAAAGATGGGTGGT 58.575 45.455 0.00 0.00 0.00 4.16
5304 14629 3.828451 CACAAGATGAAAGATGGGTGGTT 59.172 43.478 0.00 0.00 0.00 3.67
5305 14630 4.281688 CACAAGATGAAAGATGGGTGGTTT 59.718 41.667 0.00 0.00 0.00 3.27
5306 14631 5.476599 CACAAGATGAAAGATGGGTGGTTTA 59.523 40.000 0.00 0.00 0.00 2.01
5307 14632 5.711976 ACAAGATGAAAGATGGGTGGTTTAG 59.288 40.000 0.00 0.00 0.00 1.85
5308 14633 5.779241 AGATGAAAGATGGGTGGTTTAGA 57.221 39.130 0.00 0.00 0.00 2.10
5309 14634 5.749462 AGATGAAAGATGGGTGGTTTAGAG 58.251 41.667 0.00 0.00 0.00 2.43
5310 14635 5.488919 AGATGAAAGATGGGTGGTTTAGAGA 59.511 40.000 0.00 0.00 0.00 3.10
5311 14636 5.779241 TGAAAGATGGGTGGTTTAGAGAT 57.221 39.130 0.00 0.00 0.00 2.75
5316 14645 5.749462 AGATGGGTGGTTTAGAGATTTCAG 58.251 41.667 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
194 197 0.948623 CCTCAATGCCAACGTCGTCA 60.949 55.000 0.00 0.00 0.00 4.35
220 223 2.672996 CCTGGTTCCCGCACTTGG 60.673 66.667 0.00 0.00 0.00 3.61
586 656 1.746787 TGCAGCCTCAAATGCACTATG 59.253 47.619 0.00 0.00 46.97 2.23
589 659 4.506039 TGCAGCCTCAAATGCACT 57.494 50.000 0.00 0.00 46.97 4.40
616 686 1.428869 ACCTTCTCAACTCAGCCTGT 58.571 50.000 0.00 0.00 0.00 4.00
635 705 6.057533 AGTCTACATTAGCTGCATTGCATAA 58.942 36.000 12.53 9.33 38.13 1.90
664 737 0.321830 GCTAGGGGCGTGTTTGGTTA 60.322 55.000 0.00 0.00 0.00 2.85
697 3446 3.102107 AACGTTGCGCTGCGTTCAA 62.102 52.632 27.27 16.59 46.53 2.69
703 3452 1.725973 GGAAGAAACGTTGCGCTGC 60.726 57.895 9.73 0.00 0.00 5.25
706 3455 1.725973 GCAGGAAGAAACGTTGCGC 60.726 57.895 0.00 0.00 0.00 6.09
714 3463 1.032014 GCCACAACTGCAGGAAGAAA 58.968 50.000 19.93 0.00 0.00 2.52
732 3481 3.373565 CCGAAAAGGCTGTGGGGC 61.374 66.667 0.00 0.00 41.20 5.80
750 3499 2.046892 GCTCACTGACATGCGGGT 60.047 61.111 0.00 0.00 0.00 5.28
794 3549 1.730064 CCACTTTCCGGATAACGTGTG 59.270 52.381 4.15 4.98 42.24 3.82
810 3565 2.307768 TCTCTGACGTCAGTTTCCACT 58.692 47.619 37.21 0.00 44.12 4.00
828 8573 2.357517 CGTTCCACGGCAGCTTCT 60.358 61.111 0.00 0.00 38.08 2.85
1327 9078 1.154205 GCATTGCCGATGTAGACGCT 61.154 55.000 0.00 0.00 38.07 5.07
1351 9102 5.272402 TGATCTTCTCCAGGTCATAGTTGA 58.728 41.667 0.00 0.00 37.76 3.18
1398 9149 9.752961 GATATGAGATACGAGTATGTAGCTAGA 57.247 37.037 0.00 0.00 40.88 2.43
1493 9320 6.801575 AGAATGAAGATCTAGGACGAAAGAC 58.198 40.000 0.00 0.00 0.00 3.01
1505 9332 8.904834 CCAGAATGAAATCAAGAATGAAGATCT 58.095 33.333 0.00 0.00 39.69 2.75
1578 9465 5.279006 GGTCTTCAGCGGATCAACTATGATA 60.279 44.000 0.00 0.00 46.30 2.15
1622 9509 8.652810 GCCTCAAGCACAATTAATAATGAAAT 57.347 30.769 3.60 0.00 42.97 2.17
1646 9534 3.189495 GGAAGAAACAAGCTTAGGTGAGC 59.811 47.826 0.00 0.00 43.02 4.26
1743 9636 8.443160 CGGCTAAGAATTACATACACCATATTG 58.557 37.037 0.00 0.00 0.00 1.90
1949 9847 5.091552 TCCCTGTTGTGAGTAGTTCCTAAT 58.908 41.667 0.00 0.00 0.00 1.73
2091 9989 9.677567 TTTGCAAGTTACAAGAAATATCACTTC 57.322 29.630 0.00 0.00 0.00 3.01
2103 10001 5.095691 ACGTCAGATTTGCAAGTTACAAG 57.904 39.130 0.00 0.00 0.00 3.16
2123 10022 8.227119 TGTCACATACAAAAGTGATTCATTACG 58.773 33.333 0.00 0.00 45.46 3.18
2130 10029 9.598517 AAACAAATGTCACATACAAAAGTGATT 57.401 25.926 0.00 0.00 45.46 2.57
2141 10040 7.106439 ACCTGAAACAAACAAATGTCACATA 57.894 32.000 0.00 0.00 31.81 2.29
2169 10068 0.968405 GCCCAGCCAACATTTCTTCA 59.032 50.000 0.00 0.00 0.00 3.02
2305 10231 6.353404 TCGATGAATAGCATAACCCACATA 57.647 37.500 0.00 0.00 37.34 2.29
2312 10238 7.543520 TGTGATCTGATCGATGAATAGCATAAC 59.456 37.037 0.54 1.50 37.34 1.89
2320 10246 6.764560 TCAAACATGTGATCTGATCGATGAAT 59.235 34.615 24.88 15.45 30.84 2.57
2322 10248 5.521372 GTCAAACATGTGATCTGATCGATGA 59.479 40.000 24.88 13.85 30.84 2.92
2333 10259 4.823442 TGCTGAGAAAGTCAAACATGTGAT 59.177 37.500 0.00 0.00 33.60 3.06
2341 10267 6.686630 TGAACTTTTTGCTGAGAAAGTCAAA 58.313 32.000 2.39 0.00 43.27 2.69
2531 10531 8.838649 TCCACAATATAAGCCTAGATATAGCA 57.161 34.615 0.00 0.00 0.00 3.49
2557 10557 0.479378 TACACCCTCACCCAAAACCC 59.521 55.000 0.00 0.00 0.00 4.11
2559 10559 2.651382 AGTACACCCTCACCCAAAAC 57.349 50.000 0.00 0.00 0.00 2.43
2565 10565 1.287146 TCCTCCTAGTACACCCTCACC 59.713 57.143 0.00 0.00 0.00 4.02
2570 10570 0.395448 AGCGTCCTCCTAGTACACCC 60.395 60.000 0.00 0.00 0.00 4.61
2578 10578 7.608761 ACATTACAAAATTAAAGCGTCCTCCTA 59.391 33.333 0.00 0.00 0.00 2.94
2579 10579 6.433093 ACATTACAAAATTAAAGCGTCCTCCT 59.567 34.615 0.00 0.00 0.00 3.69
2581 10581 9.221775 CATACATTACAAAATTAAAGCGTCCTC 57.778 33.333 0.00 0.00 0.00 3.71
2586 10586 8.806634 ACATGCATACATTACAAAATTAAAGCG 58.193 29.630 0.00 0.00 32.87 4.68
2592 10592 6.328714 TCGCACATGCATACATTACAAAATT 58.671 32.000 0.00 0.00 42.21 1.82
2629 10629 2.100631 GGCCACATCGAGTTCACCG 61.101 63.158 0.00 0.00 0.00 4.94
2665 10665 9.139174 GACGAATCCACACATAAAATGATTTTT 57.861 29.630 8.60 0.00 38.56 1.94
2668 10668 7.630242 AGACGAATCCACACATAAAATGATT 57.370 32.000 0.00 0.00 0.00 2.57
2676 10678 2.093181 CCCCAAGACGAATCCACACATA 60.093 50.000 0.00 0.00 0.00 2.29
2681 10683 1.749258 GCCCCCAAGACGAATCCAC 60.749 63.158 0.00 0.00 0.00 4.02
2689 10691 1.341383 ACATTCTCATGCCCCCAAGAC 60.341 52.381 0.00 0.00 33.05 3.01
2691 10693 2.092212 AGTACATTCTCATGCCCCCAAG 60.092 50.000 0.00 0.00 33.05 3.61
2699 10703 3.246936 CCATGCACGAGTACATTCTCATG 59.753 47.826 0.00 3.34 34.46 3.07
2776 11306 4.518590 CACATTACCTCACCACAAACATGA 59.481 41.667 0.00 0.00 0.00 3.07
2866 11457 4.041815 GGTGGAGAAGGGAACTAGAAACTT 59.958 45.833 0.00 0.00 42.68 2.66
2868 11459 3.326880 TGGTGGAGAAGGGAACTAGAAAC 59.673 47.826 0.00 0.00 42.68 2.78
3073 11669 9.162793 GCATTCTATAGTGATTTTTGATGAACG 57.837 33.333 0.00 0.00 0.00 3.95
3105 11701 7.539034 AATGTTGGCTTTAGGTCTTATTTGT 57.461 32.000 0.00 0.00 0.00 2.83
3106 11702 9.353999 GTTAATGTTGGCTTTAGGTCTTATTTG 57.646 33.333 0.00 0.00 0.00 2.32
3130 11726 4.147321 ACTGCATCCTCTGAAAATGTGTT 58.853 39.130 0.00 0.00 0.00 3.32
3154 11750 0.524816 CCATCAAGATGCAGCGCAAC 60.525 55.000 11.47 0.21 43.62 4.17
3206 11802 2.678190 GCGATTGCAGTCCTAGAAGGTT 60.678 50.000 3.33 0.00 42.15 3.50
3242 11838 6.183361 TGTTGTACATACCTGAGGAAGAAACA 60.183 38.462 4.99 3.79 0.00 2.83
3283 11883 8.778358 GGTATTGCCATCTAAGAATCACTTAAG 58.222 37.037 0.00 0.00 37.63 1.85
3362 11965 6.116126 GCAATATACTGTCCTTGAAGACCTT 58.884 40.000 0.00 0.00 35.83 3.50
3407 12010 6.094881 TGCAAACAAATCCTTAGGCTATACAC 59.905 38.462 0.00 0.00 0.00 2.90
3490 12515 4.810191 GGAAGAAGTCCTTTAGCTCAGA 57.190 45.455 0.00 0.00 43.98 3.27
3778 12814 5.730550 TGTCCACATGATAAGTACAAGGAC 58.269 41.667 0.00 0.00 42.44 3.85
3783 12819 4.142049 TGCGATGTCCACATGATAAGTACA 60.142 41.667 0.00 0.00 36.57 2.90
3821 12857 4.281898 TCTACAGGAAAACTAAGTGGGC 57.718 45.455 0.00 0.00 0.00 5.36
3852 12888 9.915629 ATTAGGTAGCTCTTAGATTTATCAACG 57.084 33.333 0.00 0.00 0.00 4.10
3927 12963 8.856490 TTTTAGATCACAACTTTCTTTTCAGC 57.144 30.769 0.00 0.00 0.00 4.26
4128 13168 4.272504 TCAAAGCAATAATAGCGCCACTAC 59.727 41.667 2.29 0.00 37.01 2.73
4197 13237 3.726557 AATTGTGAATCAGGAGCAGGA 57.273 42.857 0.00 0.00 0.00 3.86
4249 13289 6.888088 GGACCACCCTGTTAAATATACAAGTT 59.112 38.462 0.00 0.00 0.00 2.66
4305 13345 1.512926 ATCAAGGCGCGGATTATCAC 58.487 50.000 8.83 0.00 0.00 3.06
4383 13436 8.093307 GCCTAAACTAGTAGTTAAGAAGTTGGT 58.907 37.037 15.84 0.00 37.47 3.67
4390 13443 8.284945 TCGATTGCCTAAACTAGTAGTTAAGA 57.715 34.615 15.84 4.35 37.47 2.10
4391 13444 8.969267 CATCGATTGCCTAAACTAGTAGTTAAG 58.031 37.037 15.84 8.82 37.47 1.85
4393 13446 6.921857 GCATCGATTGCCTAAACTAGTAGTTA 59.078 38.462 15.84 0.00 46.15 2.24
4424 13477 6.270815 TCGACAACATAGTATTGAACTAGCC 58.729 40.000 0.00 0.00 43.90 3.93
4455 13510 4.499019 CCATACCGGCATGTGTTTTATTCC 60.499 45.833 13.67 0.00 0.00 3.01
4468 13523 1.414919 GTCATAGGAACCATACCGGCA 59.585 52.381 0.00 0.00 39.03 5.69
4469 13524 1.414919 TGTCATAGGAACCATACCGGC 59.585 52.381 0.00 0.00 39.03 6.13
4496 13551 7.173218 GTCTGTTCACCACATTAGAAATTCAGA 59.827 37.037 0.00 0.00 33.76 3.27
4511 13566 3.337358 CATGTGCTATGTCTGTTCACCA 58.663 45.455 0.00 0.00 0.00 4.17
4539 13594 8.936864 ACTTCGTTTTCTTCTATTTAGGTCATG 58.063 33.333 0.00 0.00 0.00 3.07
4568 13623 5.835113 AGCTTGTGTTTTATGTTGTGAGT 57.165 34.783 0.00 0.00 0.00 3.41
4634 13690 8.247562 ACAACAATAGTGTTCTTGCTACAAAAA 58.752 29.630 5.41 0.00 45.00 1.94
4658 13714 5.767168 TCATGTCAAATGGTCAACATGTACA 59.233 36.000 0.00 0.00 45.76 2.90
4660 13716 6.890979 TTCATGTCAAATGGTCAACATGTA 57.109 33.333 0.00 2.70 45.76 2.29
4665 13721 3.989817 GGCTTTCATGTCAAATGGTCAAC 59.010 43.478 0.00 0.00 0.00 3.18
4668 13724 2.094026 GGGGCTTTCATGTCAAATGGTC 60.094 50.000 0.00 0.00 0.00 4.02
4683 13739 0.984230 TCAAGTTGAGATCGGGGCTT 59.016 50.000 0.08 0.00 0.00 4.35
4686 13742 5.220710 AGAATATCAAGTTGAGATCGGGG 57.779 43.478 13.16 0.00 26.68 5.73
4688 13744 5.694006 GTGGAGAATATCAAGTTGAGATCGG 59.306 44.000 13.16 0.00 26.68 4.18
4694 13750 6.947733 ACAAATGGTGGAGAATATCAAGTTGA 59.052 34.615 8.27 8.27 0.00 3.18
4696 13752 7.605449 CAACAAATGGTGGAGAATATCAAGTT 58.395 34.615 0.00 0.00 0.00 2.66
4714 13770 3.972133 TCTCCATCATCCAGCAACAAAT 58.028 40.909 0.00 0.00 0.00 2.32
4716 13772 3.009363 TCTTCTCCATCATCCAGCAACAA 59.991 43.478 0.00 0.00 0.00 2.83
4717 13773 2.573009 TCTTCTCCATCATCCAGCAACA 59.427 45.455 0.00 0.00 0.00 3.33
4718 13774 3.272574 TCTTCTCCATCATCCAGCAAC 57.727 47.619 0.00 0.00 0.00 4.17
4719 13775 4.305539 TTTCTTCTCCATCATCCAGCAA 57.694 40.909 0.00 0.00 0.00 3.91
4725 13781 4.019174 TGCCCTTTTTCTTCTCCATCATC 58.981 43.478 0.00 0.00 0.00 2.92
4762 13831 2.069165 GCTCTTCCCCACACCTTGGT 62.069 60.000 0.00 0.00 45.25 3.67
4763 13832 1.303643 GCTCTTCCCCACACCTTGG 60.304 63.158 0.00 0.00 46.47 3.61
4784 14092 2.093181 TCATCTATGAACAACACCCCGG 60.093 50.000 0.00 0.00 33.08 5.73
4785 14093 3.260475 TCATCTATGAACAACACCCCG 57.740 47.619 0.00 0.00 33.08 5.73
4789 14097 8.292448 AGAACAACAATCATCTATGAACAACAC 58.708 33.333 0.00 0.00 40.69 3.32
4832 14152 5.055265 TGTTTCCAACCTCATTTACCTCA 57.945 39.130 0.00 0.00 0.00 3.86
4833 14153 7.696992 TTATGTTTCCAACCTCATTTACCTC 57.303 36.000 0.00 0.00 0.00 3.85
4884 14204 5.128919 ACACTTGGATGGATTGATAAGCTC 58.871 41.667 0.00 0.00 0.00 4.09
4898 14218 3.943381 CACACATGATGCTACACTTGGAT 59.057 43.478 0.00 0.00 0.00 3.41
4927 14247 0.550914 TTGGTTGTGCTCCAAGGAGT 59.449 50.000 16.94 0.00 43.70 3.85
4949 14271 2.692557 ACTTGCAAGGCAACATGTACAA 59.307 40.909 29.18 0.00 43.99 2.41
5001 14323 0.609957 CTTCCAGAGTTGGCATGCCA 60.610 55.000 35.59 35.59 44.63 4.92
5005 14327 1.000396 GCCCTTCCAGAGTTGGCAT 60.000 57.895 0.00 0.00 44.63 4.40
5026 14348 5.789643 TTTTGGAATTTCCCTCTCAACAG 57.210 39.130 12.90 0.00 35.03 3.16
5081 14404 0.818040 GCAAAAGAGTGTCACCCCGT 60.818 55.000 0.00 0.00 0.00 5.28
5082 14405 0.535102 AGCAAAAGAGTGTCACCCCG 60.535 55.000 0.00 0.00 0.00 5.73
5136 14460 6.276092 CCCCCTAATATAGGTTGGAATGGTTA 59.724 42.308 2.93 0.00 44.73 2.85
5138 14462 4.606255 CCCCCTAATATAGGTTGGAATGGT 59.394 45.833 2.93 0.00 44.73 3.55
5175 14499 4.040339 TGAGATTACCACACACTGACATGT 59.960 41.667 0.00 0.00 0.00 3.21
5215 14539 0.468214 TCGATGCACCCCACCAAAAA 60.468 50.000 0.00 0.00 0.00 1.94
5255 14580 2.101415 TGATGCTAGACCATGACTTCCG 59.899 50.000 0.00 0.00 0.00 4.30
5262 14587 1.878088 GCACCATGATGCTAGACCATG 59.122 52.381 4.24 3.31 42.62 3.66
5263 14588 1.491754 TGCACCATGATGCTAGACCAT 59.508 47.619 14.55 0.00 46.28 3.55
5295 14620 5.251700 ACTCTGAAATCTCTAAACCACCCAT 59.748 40.000 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.