Multiple sequence alignment - TraesCS5B01G177000
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G177000 | chr5B | 100.000 | 2123 | 0 | 0 | 1 | 2123 | 322912951 | 322915073 | 0.000000e+00 | 3921 |
1 | TraesCS5B01G177000 | chr5D | 89.644 | 2076 | 128 | 46 | 2 | 2045 | 285464572 | 285466592 | 0.000000e+00 | 2562 |
2 | TraesCS5B01G177000 | chr5D | 92.857 | 126 | 6 | 2 | 2 | 125 | 285300698 | 285300822 | 1.670000e-41 | 180 |
3 | TraesCS5B01G177000 | chr5A | 91.351 | 1688 | 91 | 22 | 2 | 1656 | 377181739 | 377183404 | 0.000000e+00 | 2257 |
4 | TraesCS5B01G177000 | chr5A | 78.351 | 194 | 21 | 12 | 1857 | 2045 | 377184148 | 377184325 | 2.880000e-19 | 106 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G177000 | chr5B | 322912951 | 322915073 | 2122 | False | 3921.0 | 3921 | 100.000 | 1 | 2123 | 1 | chr5B.!!$F1 | 2122 |
1 | TraesCS5B01G177000 | chr5D | 285464572 | 285466592 | 2020 | False | 2562.0 | 2562 | 89.644 | 2 | 2045 | 1 | chr5D.!!$F2 | 2043 |
2 | TraesCS5B01G177000 | chr5A | 377181739 | 377184325 | 2586 | False | 1181.5 | 2257 | 84.851 | 2 | 2045 | 2 | chr5A.!!$F1 | 2043 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
102 | 104 | 0.033601 | AGTGCCCTGTGTTTTGACCA | 60.034 | 50.0 | 0.0 | 0.0 | 0.0 | 4.02 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1986 | 2589 | 0.174845 | TGCGTAGGATGCAGTACACC | 59.825 | 55.0 | 0.0 | 0.0 | 34.76 | 4.16 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
68 | 70 | 1.070445 | ACACAGGAGCAGCAGACAC | 59.930 | 57.895 | 0.00 | 0.00 | 0.00 | 3.67 |
80 | 82 | 1.152777 | CAGACACCCCCTGCACAAA | 60.153 | 57.895 | 0.00 | 0.00 | 0.00 | 2.83 |
101 | 103 | 1.111277 | AAGTGCCCTGTGTTTTGACC | 58.889 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
102 | 104 | 0.033601 | AGTGCCCTGTGTTTTGACCA | 60.034 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
166 | 171 | 2.147958 | TCAAACGGCTACAATGTCCAC | 58.852 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
199 | 204 | 0.866906 | CAACCAAAGCACGCACACAG | 60.867 | 55.000 | 0.00 | 0.00 | 0.00 | 3.66 |
267 | 288 | 5.948992 | AGTGCTTTCCAGTCAAAAGATAC | 57.051 | 39.130 | 0.03 | 0.00 | 36.09 | 2.24 |
268 | 289 | 4.762251 | AGTGCTTTCCAGTCAAAAGATACC | 59.238 | 41.667 | 0.03 | 0.00 | 36.09 | 2.73 |
324 | 348 | 0.973632 | TTCCTAGCAGCTTCCGAACA | 59.026 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
339 | 363 | 1.144969 | GAACAAATCGAGGCGACACA | 58.855 | 50.000 | 0.00 | 0.00 | 39.18 | 3.72 |
397 | 421 | 8.848474 | TCCATAAACTCTTTCCAACTCTTTAG | 57.152 | 34.615 | 0.00 | 0.00 | 0.00 | 1.85 |
492 | 518 | 3.695060 | AGAAGATCTTGGCAATGCAAGAG | 59.305 | 43.478 | 14.00 | 9.72 | 40.27 | 2.85 |
573 | 599 | 4.530553 | TCCAAGTACCAAGATAGACAAGCA | 59.469 | 41.667 | 0.00 | 0.00 | 0.00 | 3.91 |
855 | 881 | 2.825836 | GCGGTTGCATGGGAGGAG | 60.826 | 66.667 | 0.00 | 0.00 | 42.15 | 3.69 |
913 | 939 | 2.677228 | CGGCCTTCCCAGTTCCAT | 59.323 | 61.111 | 0.00 | 0.00 | 0.00 | 3.41 |
930 | 956 | 1.376543 | CATACCACAGCAAGCTCCAG | 58.623 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
940 | 966 | 1.307691 | AAGCTCCAGCCAGGGATCT | 60.308 | 57.895 | 0.00 | 0.00 | 43.38 | 2.75 |
970 | 997 | 2.748268 | GAGCGAACTCTCCTGCTTG | 58.252 | 57.895 | 0.00 | 0.00 | 40.03 | 4.01 |
975 | 1002 | 1.405256 | CGAACTCTCCTGCTTGCATCT | 60.405 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
1124 | 1151 | 1.612462 | CCTTTGCTGGCATGACTGAGA | 60.612 | 52.381 | 10.05 | 0.00 | 0.00 | 3.27 |
1147 | 1178 | 2.158711 | CCAAGCTGCATTCTCCTCCATA | 60.159 | 50.000 | 1.02 | 0.00 | 0.00 | 2.74 |
1169 | 1201 | 3.159298 | CCCATCAAGTCAAGGGTCG | 57.841 | 57.895 | 0.00 | 0.00 | 36.52 | 4.79 |
1219 | 1251 | 7.604657 | AGGGAAGTATCATCAGTTAGTTAGG | 57.395 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
1220 | 1252 | 7.363031 | AGGGAAGTATCATCAGTTAGTTAGGA | 58.637 | 38.462 | 0.00 | 0.00 | 0.00 | 2.94 |
1221 | 1253 | 7.288158 | AGGGAAGTATCATCAGTTAGTTAGGAC | 59.712 | 40.741 | 0.00 | 0.00 | 0.00 | 3.85 |
1222 | 1254 | 7.288158 | GGGAAGTATCATCAGTTAGTTAGGACT | 59.712 | 40.741 | 0.00 | 0.00 | 39.97 | 3.85 |
1223 | 1255 | 8.697292 | GGAAGTATCATCAGTTAGTTAGGACTT | 58.303 | 37.037 | 0.00 | 0.00 | 37.33 | 3.01 |
1240 | 1272 | 9.671279 | GTTAGGACTTAGAGTAGAAGTAGAAGT | 57.329 | 37.037 | 0.00 | 0.00 | 37.27 | 3.01 |
1311 | 1347 | 8.453238 | TTGGTAGACTAGACATTCTATCAGTC | 57.547 | 38.462 | 0.00 | 0.00 | 36.90 | 3.51 |
1316 | 1352 | 8.734218 | AGACTAGACATTCTATCAGTCGTTTA | 57.266 | 34.615 | 0.00 | 0.00 | 37.36 | 2.01 |
1317 | 1353 | 9.344772 | AGACTAGACATTCTATCAGTCGTTTAT | 57.655 | 33.333 | 0.00 | 0.00 | 37.36 | 1.40 |
1334 | 1370 | 8.665685 | AGTCGTTTATTTCACCATGAGTTATTC | 58.334 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
1373 | 1410 | 3.334583 | TTCTCCACCTTTTCTCCGATG | 57.665 | 47.619 | 0.00 | 0.00 | 0.00 | 3.84 |
1378 | 1415 | 0.673644 | ACCTTTTCTCCGATGTGCCG | 60.674 | 55.000 | 0.00 | 0.00 | 0.00 | 5.69 |
1400 | 1439 | 2.057922 | CCCTTAGGCAGTGGGATATGT | 58.942 | 52.381 | 0.00 | 0.00 | 43.47 | 2.29 |
1425 | 1464 | 5.048083 | GGCTGTTGTATCTTTTTGGACATGA | 60.048 | 40.000 | 0.00 | 0.00 | 0.00 | 3.07 |
1432 | 1471 | 8.806429 | TGTATCTTTTTGGACATGATGTGTAT | 57.194 | 30.769 | 1.23 | 0.00 | 42.36 | 2.29 |
1443 | 1482 | 5.754782 | ACATGATGTGTATTGTACCCATGT | 58.245 | 37.500 | 0.00 | 0.00 | 39.91 | 3.21 |
1444 | 1483 | 5.822519 | ACATGATGTGTATTGTACCCATGTC | 59.177 | 40.000 | 0.00 | 0.00 | 39.91 | 3.06 |
1490 | 1529 | 6.483307 | AGTGAAAGAATCAAAGTCGAACATGA | 59.517 | 34.615 | 0.00 | 0.00 | 40.50 | 3.07 |
1493 | 1532 | 5.613358 | AGAATCAAAGTCGAACATGAACC | 57.387 | 39.130 | 0.00 | 0.00 | 0.00 | 3.62 |
1502 | 1541 | 2.076863 | CGAACATGAACCCTTGTCCTC | 58.923 | 52.381 | 0.00 | 0.00 | 31.27 | 3.71 |
1506 | 1545 | 3.256704 | ACATGAACCCTTGTCCTCCTAA | 58.743 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
1547 | 1586 | 5.593679 | TTTATCTTCTTCGGTAGTGGAGG | 57.406 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
1548 | 1587 | 1.183549 | TCTTCTTCGGTAGTGGAGGC | 58.816 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
1549 | 1588 | 0.895530 | CTTCTTCGGTAGTGGAGGCA | 59.104 | 55.000 | 0.00 | 0.00 | 0.00 | 4.75 |
1550 | 1589 | 1.275291 | CTTCTTCGGTAGTGGAGGCAA | 59.725 | 52.381 | 0.00 | 0.00 | 0.00 | 4.52 |
1551 | 1590 | 1.568504 | TCTTCGGTAGTGGAGGCAAT | 58.431 | 50.000 | 0.00 | 0.00 | 0.00 | 3.56 |
1552 | 1591 | 2.742348 | TCTTCGGTAGTGGAGGCAATA | 58.258 | 47.619 | 0.00 | 0.00 | 0.00 | 1.90 |
1553 | 1592 | 3.305720 | TCTTCGGTAGTGGAGGCAATAT | 58.694 | 45.455 | 0.00 | 0.00 | 0.00 | 1.28 |
1554 | 1593 | 3.069586 | TCTTCGGTAGTGGAGGCAATATG | 59.930 | 47.826 | 0.00 | 0.00 | 0.00 | 1.78 |
1555 | 1594 | 2.673258 | TCGGTAGTGGAGGCAATATGA | 58.327 | 47.619 | 0.00 | 0.00 | 0.00 | 2.15 |
1558 | 1597 | 3.181465 | CGGTAGTGGAGGCAATATGAGTT | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
1563 | 1602 | 5.784177 | AGTGGAGGCAATATGAGTTATACG | 58.216 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
1567 | 1606 | 6.094061 | GGAGGCAATATGAGTTATACGACTC | 58.906 | 44.000 | 0.00 | 0.00 | 44.97 | 3.36 |
1593 | 1632 | 8.644318 | GAGCTGTCGATAAACTTTTAATCCTA | 57.356 | 34.615 | 0.00 | 0.00 | 0.00 | 2.94 |
1627 | 1666 | 2.416566 | CGCTATATTCTGGAGCTCGCAT | 60.417 | 50.000 | 7.83 | 0.00 | 33.91 | 4.73 |
1629 | 1668 | 3.616379 | GCTATATTCTGGAGCTCGCATTC | 59.384 | 47.826 | 7.83 | 0.00 | 33.28 | 2.67 |
1656 | 1696 | 6.757897 | ATAGAAATAACCATGTGTGTGTGG | 57.242 | 37.500 | 0.00 | 0.00 | 41.35 | 4.17 |
1657 | 1697 | 3.826157 | AGAAATAACCATGTGTGTGTGGG | 59.174 | 43.478 | 0.00 | 0.00 | 39.86 | 4.61 |
1658 | 1698 | 1.544724 | ATAACCATGTGTGTGTGGGC | 58.455 | 50.000 | 0.00 | 0.00 | 39.86 | 5.36 |
1659 | 1699 | 0.538516 | TAACCATGTGTGTGTGGGCC | 60.539 | 55.000 | 0.00 | 0.00 | 39.86 | 5.80 |
1660 | 1700 | 2.990967 | CCATGTGTGTGTGGGCCC | 60.991 | 66.667 | 17.59 | 17.59 | 0.00 | 5.80 |
1661 | 1701 | 2.203466 | CATGTGTGTGTGGGCCCA | 60.203 | 61.111 | 24.45 | 24.45 | 0.00 | 5.36 |
1662 | 1702 | 2.203480 | ATGTGTGTGTGGGCCCAC | 60.203 | 61.111 | 42.81 | 42.81 | 46.33 | 4.61 |
1690 | 1730 | 2.808206 | GGGCGTGAGGTGGGGATAG | 61.808 | 68.421 | 0.00 | 0.00 | 0.00 | 2.08 |
1694 | 1734 | 1.191535 | CGTGAGGTGGGGATAGAACA | 58.808 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1696 | 1736 | 2.170607 | CGTGAGGTGGGGATAGAACATT | 59.829 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
1702 | 1742 | 3.714798 | GGTGGGGATAGAACATTACCTCA | 59.285 | 47.826 | 0.00 | 0.00 | 0.00 | 3.86 |
1708 | 1748 | 8.561769 | TGGGGATAGAACATTACCTCAATTTTA | 58.438 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
1776 | 2005 | 4.844349 | ATAAATCACTAGGGTGCACAGT | 57.156 | 40.909 | 20.43 | 10.97 | 42.72 | 3.55 |
1809 | 2038 | 1.270550 | CAGGAAGTCCACAAATGCACC | 59.729 | 52.381 | 0.00 | 0.00 | 38.89 | 5.01 |
1812 | 2041 | 2.545742 | GGAAGTCCACAAATGCACCAAC | 60.546 | 50.000 | 0.00 | 0.00 | 35.64 | 3.77 |
1825 | 2054 | 5.581126 | ATGCACCAACTGTAATAACCATG | 57.419 | 39.130 | 0.00 | 0.00 | 0.00 | 3.66 |
1867 | 2470 | 4.051237 | GTTGTCAGAAATTTTGTCCAGGC | 58.949 | 43.478 | 0.00 | 0.00 | 0.00 | 4.85 |
1896 | 2499 | 7.362662 | TGATGAGTTGAAGTGCATAAGAAAAC | 58.637 | 34.615 | 0.00 | 0.00 | 0.00 | 2.43 |
1906 | 2509 | 7.636150 | AGTGCATAAGAAAACAGCTTCATAT | 57.364 | 32.000 | 0.00 | 0.00 | 0.00 | 1.78 |
1907 | 2510 | 8.737168 | AGTGCATAAGAAAACAGCTTCATATA | 57.263 | 30.769 | 0.00 | 0.00 | 0.00 | 0.86 |
1908 | 2511 | 9.177608 | AGTGCATAAGAAAACAGCTTCATATAA | 57.822 | 29.630 | 0.00 | 0.00 | 0.00 | 0.98 |
1925 | 2528 | 9.443283 | CTTCATATAATGTCTTAAGCAGCAAAC | 57.557 | 33.333 | 0.00 | 0.00 | 0.00 | 2.93 |
1928 | 2531 | 9.013490 | CATATAATGTCTTAAGCAGCAAACAAC | 57.987 | 33.333 | 0.00 | 0.00 | 0.00 | 3.32 |
1937 | 2540 | 0.517316 | CAGCAAACAACGGAGCCTAC | 59.483 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1938 | 2541 | 0.605589 | AGCAAACAACGGAGCCTACC | 60.606 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1939 | 2542 | 0.887387 | GCAAACAACGGAGCCTACCA | 60.887 | 55.000 | 0.00 | 0.00 | 0.00 | 3.25 |
1940 | 2543 | 1.156736 | CAAACAACGGAGCCTACCAG | 58.843 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1941 | 2544 | 0.036306 | AAACAACGGAGCCTACCAGG | 59.964 | 55.000 | 0.00 | 0.00 | 38.80 | 4.45 |
1942 | 2545 | 1.838073 | AACAACGGAGCCTACCAGGG | 61.838 | 60.000 | 0.00 | 0.00 | 35.37 | 4.45 |
1950 | 2553 | 3.477783 | GCCTACCAGGGCCTACTAT | 57.522 | 57.895 | 5.28 | 0.00 | 45.92 | 2.12 |
1951 | 2554 | 1.730851 | GCCTACCAGGGCCTACTATT | 58.269 | 55.000 | 5.28 | 0.00 | 45.92 | 1.73 |
1952 | 2555 | 2.898662 | GCCTACCAGGGCCTACTATTA | 58.101 | 52.381 | 5.28 | 0.00 | 45.92 | 0.98 |
1953 | 2556 | 3.451890 | GCCTACCAGGGCCTACTATTAT | 58.548 | 50.000 | 5.28 | 0.00 | 45.92 | 1.28 |
1954 | 2557 | 4.617593 | GCCTACCAGGGCCTACTATTATA | 58.382 | 47.826 | 5.28 | 0.00 | 45.92 | 0.98 |
1955 | 2558 | 5.217400 | GCCTACCAGGGCCTACTATTATAT | 58.783 | 45.833 | 5.28 | 0.00 | 45.92 | 0.86 |
1956 | 2559 | 6.379579 | GCCTACCAGGGCCTACTATTATATA | 58.620 | 44.000 | 5.28 | 0.00 | 45.92 | 0.86 |
1967 | 2570 | 8.541234 | GGCCTACTATTATATAAGCAGTCCTTT | 58.459 | 37.037 | 13.20 | 0.00 | 34.95 | 3.11 |
1986 | 2589 | 7.228706 | AGTCCTTTATTGTCCTTTTGTACTGTG | 59.771 | 37.037 | 0.00 | 0.00 | 0.00 | 3.66 |
1999 | 2607 | 2.028476 | TGTACTGTGGTGTACTGCATCC | 60.028 | 50.000 | 6.41 | 0.00 | 42.22 | 3.51 |
2014 | 2622 | 2.266554 | GCATCCTACGCATCATAGCTC | 58.733 | 52.381 | 0.00 | 0.00 | 0.00 | 4.09 |
2015 | 2623 | 2.353109 | GCATCCTACGCATCATAGCTCA | 60.353 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
2016 | 2624 | 3.862264 | GCATCCTACGCATCATAGCTCAA | 60.862 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
2017 | 2625 | 4.502016 | CATCCTACGCATCATAGCTCAAT | 58.498 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
2018 | 2626 | 4.607293 | TCCTACGCATCATAGCTCAATT | 57.393 | 40.909 | 0.00 | 0.00 | 0.00 | 2.32 |
2019 | 2627 | 5.722021 | TCCTACGCATCATAGCTCAATTA | 57.278 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
2020 | 2628 | 6.096673 | TCCTACGCATCATAGCTCAATTAA | 57.903 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
2021 | 2629 | 5.926542 | TCCTACGCATCATAGCTCAATTAAC | 59.073 | 40.000 | 0.00 | 0.00 | 0.00 | 2.01 |
2022 | 2630 | 4.715520 | ACGCATCATAGCTCAATTAACG | 57.284 | 40.909 | 0.00 | 0.00 | 0.00 | 3.18 |
2023 | 2631 | 4.119862 | ACGCATCATAGCTCAATTAACGT | 58.880 | 39.130 | 0.00 | 0.00 | 0.00 | 3.99 |
2024 | 2632 | 4.570772 | ACGCATCATAGCTCAATTAACGTT | 59.429 | 37.500 | 5.88 | 5.88 | 0.00 | 3.99 |
2025 | 2633 | 5.064707 | ACGCATCATAGCTCAATTAACGTTT | 59.935 | 36.000 | 5.91 | 0.00 | 0.00 | 3.60 |
2026 | 2634 | 5.393452 | CGCATCATAGCTCAATTAACGTTTG | 59.607 | 40.000 | 5.91 | 0.00 | 0.00 | 2.93 |
2027 | 2635 | 6.258160 | GCATCATAGCTCAATTAACGTTTGT | 58.742 | 36.000 | 5.91 | 0.00 | 0.00 | 2.83 |
2028 | 2636 | 7.406553 | GCATCATAGCTCAATTAACGTTTGTA | 58.593 | 34.615 | 5.91 | 0.00 | 0.00 | 2.41 |
2029 | 2637 | 7.373441 | GCATCATAGCTCAATTAACGTTTGTAC | 59.627 | 37.037 | 5.91 | 0.00 | 0.00 | 2.90 |
2030 | 2638 | 7.892778 | TCATAGCTCAATTAACGTTTGTACA | 57.107 | 32.000 | 5.91 | 0.00 | 0.00 | 2.90 |
2031 | 2639 | 7.735500 | TCATAGCTCAATTAACGTTTGTACAC | 58.264 | 34.615 | 5.91 | 0.00 | 0.00 | 2.90 |
2032 | 2640 | 5.013861 | AGCTCAATTAACGTTTGTACACG | 57.986 | 39.130 | 5.91 | 0.00 | 46.04 | 4.49 |
2040 | 2648 | 2.392611 | CGTTTGTACACGTACGCATC | 57.607 | 50.000 | 16.72 | 4.34 | 38.85 | 3.91 |
2041 | 2649 | 1.714990 | CGTTTGTACACGTACGCATCA | 59.285 | 47.619 | 16.72 | 7.04 | 38.85 | 3.07 |
2042 | 2650 | 2.343246 | CGTTTGTACACGTACGCATCAT | 59.657 | 45.455 | 16.72 | 0.00 | 38.85 | 2.45 |
2060 | 2668 | 6.968904 | CGCATCATAGCTGAATTAACTTTTGT | 59.031 | 34.615 | 0.00 | 0.00 | 34.37 | 2.83 |
2068 | 2676 | 7.570161 | AGCTGAATTAACTTTTGTACACGTAC | 58.430 | 34.615 | 0.00 | 0.22 | 36.63 | 3.67 |
2069 | 2677 | 7.440255 | AGCTGAATTAACTTTTGTACACGTACT | 59.560 | 33.333 | 8.69 | 0.00 | 37.00 | 2.73 |
2070 | 2678 | 8.702438 | GCTGAATTAACTTTTGTACACGTACTA | 58.298 | 33.333 | 8.69 | 0.00 | 37.00 | 1.82 |
2072 | 2680 | 8.702438 | TGAATTAACTTTTGTACACGTACTAGC | 58.298 | 33.333 | 8.69 | 0.00 | 37.00 | 3.42 |
2073 | 2681 | 8.592105 | AATTAACTTTTGTACACGTACTAGCA | 57.408 | 30.769 | 8.69 | 0.00 | 37.00 | 3.49 |
2074 | 2682 | 7.627585 | TTAACTTTTGTACACGTACTAGCAG | 57.372 | 36.000 | 8.69 | 4.40 | 37.00 | 4.24 |
2075 | 2683 | 4.553323 | ACTTTTGTACACGTACTAGCAGG | 58.447 | 43.478 | 8.69 | 0.00 | 37.00 | 4.85 |
2076 | 2684 | 2.642139 | TTGTACACGTACTAGCAGGC | 57.358 | 50.000 | 8.69 | 0.00 | 37.00 | 4.85 |
2077 | 2685 | 1.536940 | TGTACACGTACTAGCAGGCA | 58.463 | 50.000 | 8.69 | 0.00 | 37.00 | 4.75 |
2078 | 2686 | 1.471287 | TGTACACGTACTAGCAGGCAG | 59.529 | 52.381 | 8.69 | 0.00 | 37.00 | 4.85 |
2079 | 2687 | 0.454600 | TACACGTACTAGCAGGCAGC | 59.545 | 55.000 | 0.00 | 0.00 | 46.19 | 5.25 |
2080 | 2688 | 4.339572 | GTACACGTACTAGCAGGCAGCA | 62.340 | 54.545 | 4.24 | 0.00 | 38.18 | 4.41 |
2081 | 2689 | 5.584886 | GTACACGTACTAGCAGGCAGCAT | 62.585 | 52.174 | 4.24 | 0.00 | 38.18 | 3.79 |
2082 | 2690 | 6.274623 | GTACACGTACTAGCAGGCAGCATA | 62.275 | 50.000 | 4.24 | 0.00 | 38.18 | 3.14 |
2083 | 2691 | 7.982013 | GTACACGTACTAGCAGGCAGCATAG | 62.982 | 52.000 | 4.24 | 5.83 | 38.18 | 2.23 |
2100 | 2708 | 5.596845 | AGCATAGCTGAACTAGTTTAGAGC | 58.403 | 41.667 | 26.70 | 22.89 | 37.57 | 4.09 |
2101 | 2709 | 4.747605 | GCATAGCTGAACTAGTTTAGAGCC | 59.252 | 45.833 | 26.70 | 12.09 | 33.29 | 4.70 |
2102 | 2710 | 5.452636 | GCATAGCTGAACTAGTTTAGAGCCT | 60.453 | 44.000 | 26.70 | 17.50 | 33.29 | 4.58 |
2103 | 2711 | 6.239064 | GCATAGCTGAACTAGTTTAGAGCCTA | 60.239 | 42.308 | 26.70 | 18.77 | 33.29 | 3.93 |
2104 | 2712 | 7.684670 | GCATAGCTGAACTAGTTTAGAGCCTAA | 60.685 | 40.741 | 26.70 | 14.55 | 33.29 | 2.69 |
2105 | 2713 | 6.215495 | AGCTGAACTAGTTTAGAGCCTAAG | 57.785 | 41.667 | 26.70 | 3.60 | 0.00 | 2.18 |
2106 | 2714 | 5.717654 | AGCTGAACTAGTTTAGAGCCTAAGT | 59.282 | 40.000 | 26.70 | 9.02 | 0.00 | 2.24 |
2107 | 2715 | 6.890814 | AGCTGAACTAGTTTAGAGCCTAAGTA | 59.109 | 38.462 | 26.70 | 0.00 | 0.00 | 2.24 |
2108 | 2716 | 7.562088 | AGCTGAACTAGTTTAGAGCCTAAGTAT | 59.438 | 37.037 | 26.70 | 7.88 | 0.00 | 2.12 |
2109 | 2717 | 7.863877 | GCTGAACTAGTTTAGAGCCTAAGTATC | 59.136 | 40.741 | 26.70 | 4.92 | 0.00 | 2.24 |
2110 | 2718 | 8.235359 | TGAACTAGTTTAGAGCCTAAGTATCC | 57.765 | 38.462 | 10.02 | 0.00 | 0.00 | 2.59 |
2111 | 2719 | 7.837689 | TGAACTAGTTTAGAGCCTAAGTATCCA | 59.162 | 37.037 | 10.02 | 0.00 | 0.00 | 3.41 |
2112 | 2720 | 8.785184 | AACTAGTTTAGAGCCTAAGTATCCAT | 57.215 | 34.615 | 1.12 | 0.00 | 0.00 | 3.41 |
2113 | 2721 | 8.411991 | ACTAGTTTAGAGCCTAAGTATCCATC | 57.588 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
2114 | 2722 | 6.673839 | AGTTTAGAGCCTAAGTATCCATCC | 57.326 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
2115 | 2723 | 6.143915 | AGTTTAGAGCCTAAGTATCCATCCA | 58.856 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2116 | 2724 | 6.789959 | AGTTTAGAGCCTAAGTATCCATCCAT | 59.210 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
2117 | 2725 | 6.859112 | TTAGAGCCTAAGTATCCATCCATC | 57.141 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
2118 | 2726 | 4.756564 | AGAGCCTAAGTATCCATCCATCA | 58.243 | 43.478 | 0.00 | 0.00 | 0.00 | 3.07 |
2119 | 2727 | 4.776837 | AGAGCCTAAGTATCCATCCATCAG | 59.223 | 45.833 | 0.00 | 0.00 | 0.00 | 2.90 |
2120 | 2728 | 4.756564 | AGCCTAAGTATCCATCCATCAGA | 58.243 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
2121 | 2729 | 5.158141 | AGCCTAAGTATCCATCCATCAGAA | 58.842 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
2122 | 2730 | 5.248020 | AGCCTAAGTATCCATCCATCAGAAG | 59.752 | 44.000 | 0.00 | 0.00 | 0.00 | 2.85 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 7.334421 | TGTTGATTTCTGAGCCTCTGTTAATAC | 59.666 | 37.037 | 0.00 | 0.00 | 0.00 | 1.89 |
1 | 2 | 7.394016 | TGTTGATTTCTGAGCCTCTGTTAATA | 58.606 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
2 | 3 | 6.240894 | TGTTGATTTCTGAGCCTCTGTTAAT | 58.759 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
4 | 5 | 5.227569 | TGTTGATTTCTGAGCCTCTGTTA | 57.772 | 39.130 | 0.00 | 0.00 | 0.00 | 2.41 |
6 | 7 | 3.777106 | TGTTGATTTCTGAGCCTCTGT | 57.223 | 42.857 | 0.00 | 0.00 | 0.00 | 3.41 |
7 | 8 | 3.377485 | CCATGTTGATTTCTGAGCCTCTG | 59.623 | 47.826 | 0.00 | 0.00 | 0.00 | 3.35 |
57 | 59 | 3.644606 | CAGGGGGTGTCTGCTGCT | 61.645 | 66.667 | 0.00 | 0.00 | 0.00 | 4.24 |
80 | 82 | 2.093711 | GGTCAAAACACAGGGCACTTTT | 60.094 | 45.455 | 0.00 | 0.00 | 0.00 | 2.27 |
101 | 103 | 5.674525 | TCCATGTATCTTGCCTAGTTTCTG | 58.325 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
102 | 104 | 5.957771 | TCCATGTATCTTGCCTAGTTTCT | 57.042 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
166 | 171 | 1.679139 | TGGTTGAGGTGCTTGTCTTG | 58.321 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
253 | 274 | 2.017113 | GCCGGGGTATCTTTTGACTGG | 61.017 | 57.143 | 2.18 | 0.00 | 0.00 | 4.00 |
324 | 348 | 0.320374 | TCCTTGTGTCGCCTCGATTT | 59.680 | 50.000 | 0.00 | 0.00 | 38.42 | 2.17 |
492 | 518 | 1.112113 | TGGGAGAACACTAGCGATCC | 58.888 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
828 | 854 | 0.657840 | ATGCAACCGCGCTAATTCTC | 59.342 | 50.000 | 5.56 | 0.00 | 42.97 | 2.87 |
870 | 896 | 2.439507 | CTGGGCTTTTATAGAGGAGGCA | 59.560 | 50.000 | 0.00 | 0.00 | 36.51 | 4.75 |
913 | 939 | 1.003355 | GCTGGAGCTTGCTGTGGTA | 60.003 | 57.895 | 0.00 | 0.00 | 38.21 | 3.25 |
930 | 956 | 0.543277 | TGTGTGATCAGATCCCTGGC | 59.457 | 55.000 | 8.00 | 0.00 | 40.76 | 4.85 |
940 | 966 | 1.889170 | AGTTCGCTCTCTGTGTGATCA | 59.111 | 47.619 | 0.00 | 0.00 | 0.00 | 2.92 |
956 | 983 | 2.278854 | GAGATGCAAGCAGGAGAGTTC | 58.721 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
970 | 997 | 5.358090 | TGATGAACTGAAGAGATGAGATGC | 58.642 | 41.667 | 0.00 | 0.00 | 0.00 | 3.91 |
975 | 1002 | 5.156608 | TGCTTGATGAACTGAAGAGATGA | 57.843 | 39.130 | 0.00 | 0.00 | 0.00 | 2.92 |
1056 | 1083 | 3.715097 | AGCCTGGCTCTGTGCTCC | 61.715 | 66.667 | 17.22 | 0.00 | 42.39 | 4.70 |
1124 | 1151 | 1.133853 | GGAGGAGAATGCAGCTTGGAT | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
1147 | 1178 | 2.887151 | CCCTTGACTTGATGGGTTCT | 57.113 | 50.000 | 0.00 | 0.00 | 35.13 | 3.01 |
1169 | 1201 | 2.983229 | AGTGTGACTTCTCCATGCATC | 58.017 | 47.619 | 0.00 | 0.00 | 0.00 | 3.91 |
1219 | 1251 | 9.889128 | TCCTAACTTCTACTTCTACTCTAAGTC | 57.111 | 37.037 | 0.00 | 0.00 | 38.18 | 3.01 |
1222 | 1254 | 9.683870 | CCTTCCTAACTTCTACTTCTACTCTAA | 57.316 | 37.037 | 0.00 | 0.00 | 0.00 | 2.10 |
1223 | 1255 | 9.055689 | TCCTTCCTAACTTCTACTTCTACTCTA | 57.944 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
1224 | 1256 | 7.931046 | TCCTTCCTAACTTCTACTTCTACTCT | 58.069 | 38.462 | 0.00 | 0.00 | 0.00 | 3.24 |
1240 | 1272 | 2.505819 | GAGCATGGGAGTTCCTTCCTAA | 59.494 | 50.000 | 0.00 | 0.00 | 37.40 | 2.69 |
1311 | 1347 | 7.461107 | ACGAATAACTCATGGTGAAATAAACG | 58.539 | 34.615 | 0.00 | 0.00 | 0.00 | 3.60 |
1363 | 1400 | 1.079405 | GGACGGCACATCGGAGAAA | 60.079 | 57.895 | 0.00 | 0.00 | 43.58 | 2.52 |
1366 | 1403 | 1.672854 | TAAGGGACGGCACATCGGAG | 61.673 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
1370 | 1407 | 1.523938 | GCCTAAGGGACGGCACATC | 60.524 | 63.158 | 0.00 | 0.00 | 45.59 | 3.06 |
1378 | 1415 | 4.147135 | TCCCACTGCCTAAGGGAC | 57.853 | 61.111 | 0.00 | 0.00 | 46.42 | 4.46 |
1400 | 1439 | 4.211125 | TGTCCAAAAAGATACAACAGCCA | 58.789 | 39.130 | 0.00 | 0.00 | 0.00 | 4.75 |
1443 | 1482 | 6.264970 | CACTGAATCATCTCTATCAGACCAGA | 59.735 | 42.308 | 8.48 | 0.00 | 41.38 | 3.86 |
1444 | 1483 | 6.264970 | TCACTGAATCATCTCTATCAGACCAG | 59.735 | 42.308 | 8.48 | 0.00 | 41.38 | 4.00 |
1490 | 1529 | 6.652205 | TTTCATATTAGGAGGACAAGGGTT | 57.348 | 37.500 | 0.00 | 0.00 | 0.00 | 4.11 |
1493 | 1532 | 8.930846 | ATTCATTTCATATTAGGAGGACAAGG | 57.069 | 34.615 | 0.00 | 0.00 | 0.00 | 3.61 |
1526 | 1565 | 3.383825 | GCCTCCACTACCGAAGAAGATAA | 59.616 | 47.826 | 0.00 | 0.00 | 0.00 | 1.75 |
1536 | 1575 | 2.365617 | ACTCATATTGCCTCCACTACCG | 59.634 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1540 | 1579 | 5.538813 | TCGTATAACTCATATTGCCTCCACT | 59.461 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1547 | 1586 | 5.284188 | GCTCGAGTCGTATAACTCATATTGC | 59.716 | 44.000 | 15.13 | 0.00 | 44.88 | 3.56 |
1548 | 1587 | 6.521477 | CAGCTCGAGTCGTATAACTCATATTG | 59.479 | 42.308 | 15.13 | 0.00 | 44.88 | 1.90 |
1549 | 1588 | 6.205076 | ACAGCTCGAGTCGTATAACTCATATT | 59.795 | 38.462 | 15.13 | 0.00 | 44.88 | 1.28 |
1550 | 1589 | 5.701750 | ACAGCTCGAGTCGTATAACTCATAT | 59.298 | 40.000 | 15.13 | 0.00 | 44.88 | 1.78 |
1551 | 1590 | 5.055144 | ACAGCTCGAGTCGTATAACTCATA | 58.945 | 41.667 | 15.13 | 0.00 | 44.88 | 2.15 |
1552 | 1591 | 3.878103 | ACAGCTCGAGTCGTATAACTCAT | 59.122 | 43.478 | 15.13 | 0.00 | 44.88 | 2.90 |
1553 | 1592 | 3.268330 | ACAGCTCGAGTCGTATAACTCA | 58.732 | 45.455 | 15.13 | 0.00 | 44.88 | 3.41 |
1554 | 1593 | 3.864163 | GACAGCTCGAGTCGTATAACTC | 58.136 | 50.000 | 15.13 | 0.00 | 41.88 | 3.01 |
1555 | 1594 | 3.948196 | GACAGCTCGAGTCGTATAACT | 57.052 | 47.619 | 15.13 | 0.00 | 0.00 | 2.24 |
1567 | 1606 | 6.255887 | AGGATTAAAAGTTTATCGACAGCTCG | 59.744 | 38.462 | 0.00 | 0.00 | 41.65 | 5.03 |
1593 | 1632 | 5.526479 | CAGAATATAGCGAGGCATGCATATT | 59.474 | 40.000 | 21.36 | 17.47 | 33.17 | 1.28 |
1603 | 1642 | 2.159448 | CGAGCTCCAGAATATAGCGAGG | 60.159 | 54.545 | 8.47 | 0.00 | 41.19 | 4.63 |
1629 | 1668 | 9.773328 | CACACACACATGGTTATTTCTATAAAG | 57.227 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
1672 | 1712 | 2.766651 | TATCCCCACCTCACGCCC | 60.767 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
1673 | 1713 | 1.335132 | TTCTATCCCCACCTCACGCC | 61.335 | 60.000 | 0.00 | 0.00 | 0.00 | 5.68 |
1674 | 1714 | 0.179081 | GTTCTATCCCCACCTCACGC | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 5.34 |
1675 | 1715 | 1.191535 | TGTTCTATCCCCACCTCACG | 58.808 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
1679 | 1719 | 3.974642 | GAGGTAATGTTCTATCCCCACCT | 59.025 | 47.826 | 0.00 | 0.00 | 37.85 | 4.00 |
1733 | 1958 | 9.787435 | TTTATTCTTGGTGTATAGAAGTTGTGT | 57.213 | 29.630 | 0.00 | 0.00 | 34.17 | 3.72 |
1742 | 1967 | 9.712305 | CCCTAGTGATTTATTCTTGGTGTATAG | 57.288 | 37.037 | 0.00 | 0.00 | 0.00 | 1.31 |
1743 | 1968 | 9.220906 | ACCCTAGTGATTTATTCTTGGTGTATA | 57.779 | 33.333 | 0.00 | 0.00 | 0.00 | 1.47 |
1776 | 2005 | 3.263425 | GGACTTCCTGTTCATTCCCTACA | 59.737 | 47.826 | 0.00 | 0.00 | 0.00 | 2.74 |
1836 | 2065 | 9.959749 | GACAAAATTTCTGACAACCAATAAGTA | 57.040 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
1837 | 2066 | 7.926018 | GGACAAAATTTCTGACAACCAATAAGT | 59.074 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
1849 | 2079 | 2.956132 | TGGCCTGGACAAAATTTCTGA | 58.044 | 42.857 | 0.00 | 0.00 | 0.00 | 3.27 |
1850 | 2080 | 3.749665 | TTGGCCTGGACAAAATTTCTG | 57.250 | 42.857 | 13.82 | 0.00 | 0.00 | 3.02 |
1867 | 2470 | 4.713824 | ATGCACTTCAACTCATCATTGG | 57.286 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
1896 | 2499 | 7.041576 | TGCTGCTTAAGACATTATATGAAGCTG | 60.042 | 37.037 | 6.67 | 0.00 | 37.32 | 4.24 |
1906 | 2509 | 5.448438 | CGTTGTTTGCTGCTTAAGACATTA | 58.552 | 37.500 | 6.67 | 0.00 | 0.00 | 1.90 |
1907 | 2510 | 4.290155 | CGTTGTTTGCTGCTTAAGACATT | 58.710 | 39.130 | 6.67 | 0.00 | 0.00 | 2.71 |
1908 | 2511 | 3.304659 | CCGTTGTTTGCTGCTTAAGACAT | 60.305 | 43.478 | 6.67 | 0.00 | 0.00 | 3.06 |
1925 | 2528 | 2.584608 | CCCTGGTAGGCTCCGTTG | 59.415 | 66.667 | 0.00 | 0.00 | 32.73 | 4.10 |
1937 | 2540 | 6.384305 | ACTGCTTATATAATAGTAGGCCCTGG | 59.616 | 42.308 | 0.00 | 0.00 | 0.00 | 4.45 |
1938 | 2541 | 7.418025 | GGACTGCTTATATAATAGTAGGCCCTG | 60.418 | 44.444 | 11.57 | 1.49 | 44.05 | 4.45 |
1939 | 2542 | 6.612049 | GGACTGCTTATATAATAGTAGGCCCT | 59.388 | 42.308 | 11.57 | 0.00 | 44.05 | 5.19 |
1940 | 2543 | 6.818233 | GGACTGCTTATATAATAGTAGGCCC | 58.182 | 44.000 | 11.57 | 5.72 | 44.05 | 5.80 |
1952 | 2555 | 9.700831 | AAAAGGACAATAAAGGACTGCTTATAT | 57.299 | 29.630 | 0.00 | 0.00 | 0.00 | 0.86 |
1953 | 2556 | 8.956426 | CAAAAGGACAATAAAGGACTGCTTATA | 58.044 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
1954 | 2557 | 7.451566 | ACAAAAGGACAATAAAGGACTGCTTAT | 59.548 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
1955 | 2558 | 6.775629 | ACAAAAGGACAATAAAGGACTGCTTA | 59.224 | 34.615 | 0.00 | 0.00 | 0.00 | 3.09 |
1956 | 2559 | 5.598417 | ACAAAAGGACAATAAAGGACTGCTT | 59.402 | 36.000 | 0.00 | 0.00 | 0.00 | 3.91 |
1967 | 2570 | 5.686753 | ACACCACAGTACAAAAGGACAATA | 58.313 | 37.500 | 0.00 | 0.00 | 0.00 | 1.90 |
1986 | 2589 | 0.174845 | TGCGTAGGATGCAGTACACC | 59.825 | 55.000 | 0.00 | 0.00 | 34.76 | 4.16 |
1999 | 2607 | 5.402568 | ACGTTAATTGAGCTATGATGCGTAG | 59.597 | 40.000 | 0.00 | 0.00 | 38.13 | 3.51 |
2022 | 2630 | 3.984018 | ATGATGCGTACGTGTACAAAC | 57.016 | 42.857 | 17.90 | 5.83 | 35.87 | 2.93 |
2023 | 2631 | 3.548668 | GCTATGATGCGTACGTGTACAAA | 59.451 | 43.478 | 17.90 | 0.00 | 35.87 | 2.83 |
2024 | 2632 | 3.110358 | GCTATGATGCGTACGTGTACAA | 58.890 | 45.455 | 17.90 | 0.00 | 35.87 | 2.41 |
2025 | 2633 | 2.356695 | AGCTATGATGCGTACGTGTACA | 59.643 | 45.455 | 17.90 | 12.23 | 35.87 | 2.90 |
2026 | 2634 | 2.719556 | CAGCTATGATGCGTACGTGTAC | 59.280 | 50.000 | 17.90 | 6.99 | 38.13 | 2.90 |
2027 | 2635 | 2.614983 | TCAGCTATGATGCGTACGTGTA | 59.385 | 45.455 | 17.90 | 4.28 | 38.13 | 2.90 |
2028 | 2636 | 1.404035 | TCAGCTATGATGCGTACGTGT | 59.596 | 47.619 | 17.90 | 5.64 | 38.13 | 4.49 |
2029 | 2637 | 2.119671 | TCAGCTATGATGCGTACGTG | 57.880 | 50.000 | 17.90 | 3.74 | 38.13 | 4.49 |
2030 | 2638 | 2.863401 | TTCAGCTATGATGCGTACGT | 57.137 | 45.000 | 17.90 | 0.00 | 34.73 | 3.57 |
2031 | 2639 | 5.402568 | AGTTAATTCAGCTATGATGCGTACG | 59.597 | 40.000 | 11.84 | 11.84 | 34.73 | 3.67 |
2032 | 2640 | 6.771188 | AGTTAATTCAGCTATGATGCGTAC | 57.229 | 37.500 | 0.00 | 0.00 | 34.73 | 3.67 |
2033 | 2641 | 7.786178 | AAAGTTAATTCAGCTATGATGCGTA | 57.214 | 32.000 | 0.00 | 0.00 | 34.73 | 4.42 |
2034 | 2642 | 6.683974 | AAAGTTAATTCAGCTATGATGCGT | 57.316 | 33.333 | 0.00 | 0.00 | 34.73 | 5.24 |
2035 | 2643 | 6.968904 | ACAAAAGTTAATTCAGCTATGATGCG | 59.031 | 34.615 | 0.00 | 0.00 | 34.73 | 4.73 |
2036 | 2644 | 9.226345 | GTACAAAAGTTAATTCAGCTATGATGC | 57.774 | 33.333 | 0.00 | 0.00 | 34.73 | 3.91 |
2039 | 2647 | 8.440059 | CGTGTACAAAAGTTAATTCAGCTATGA | 58.560 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
2040 | 2648 | 8.227791 | ACGTGTACAAAAGTTAATTCAGCTATG | 58.772 | 33.333 | 0.00 | 0.00 | 0.00 | 2.23 |
2041 | 2649 | 8.319143 | ACGTGTACAAAAGTTAATTCAGCTAT | 57.681 | 30.769 | 0.00 | 0.00 | 0.00 | 2.97 |
2042 | 2650 | 7.718272 | ACGTGTACAAAAGTTAATTCAGCTA | 57.282 | 32.000 | 0.00 | 0.00 | 0.00 | 3.32 |
2060 | 2668 | 0.454600 | GCTGCCTGCTAGTACGTGTA | 59.545 | 55.000 | 0.00 | 0.00 | 38.95 | 2.90 |
2077 | 2685 | 5.452636 | GGCTCTAAACTAGTTCAGCTATGCT | 60.453 | 44.000 | 23.29 | 5.38 | 40.77 | 3.79 |
2078 | 2686 | 4.747605 | GGCTCTAAACTAGTTCAGCTATGC | 59.252 | 45.833 | 23.29 | 14.64 | 0.00 | 3.14 |
2079 | 2687 | 6.155475 | AGGCTCTAAACTAGTTCAGCTATG | 57.845 | 41.667 | 23.29 | 8.11 | 0.00 | 2.23 |
2080 | 2688 | 7.562088 | ACTTAGGCTCTAAACTAGTTCAGCTAT | 59.438 | 37.037 | 23.29 | 17.63 | 0.00 | 2.97 |
2081 | 2689 | 6.890814 | ACTTAGGCTCTAAACTAGTTCAGCTA | 59.109 | 38.462 | 23.29 | 15.22 | 0.00 | 3.32 |
2082 | 2690 | 5.717654 | ACTTAGGCTCTAAACTAGTTCAGCT | 59.282 | 40.000 | 23.29 | 15.87 | 0.00 | 4.24 |
2083 | 2691 | 5.968254 | ACTTAGGCTCTAAACTAGTTCAGC | 58.032 | 41.667 | 19.10 | 19.10 | 0.00 | 4.26 |
2084 | 2692 | 8.354426 | GGATACTTAGGCTCTAAACTAGTTCAG | 58.646 | 40.741 | 8.95 | 3.60 | 0.00 | 3.02 |
2085 | 2693 | 7.837689 | TGGATACTTAGGCTCTAAACTAGTTCA | 59.162 | 37.037 | 8.95 | 0.00 | 37.61 | 3.18 |
2086 | 2694 | 8.235359 | TGGATACTTAGGCTCTAAACTAGTTC | 57.765 | 38.462 | 8.95 | 0.00 | 37.61 | 3.01 |
2087 | 2695 | 8.785184 | ATGGATACTTAGGCTCTAAACTAGTT | 57.215 | 34.615 | 1.12 | 1.12 | 37.61 | 2.24 |
2088 | 2696 | 7.452189 | GGATGGATACTTAGGCTCTAAACTAGT | 59.548 | 40.741 | 0.00 | 0.00 | 37.61 | 2.57 |
2089 | 2697 | 7.451877 | TGGATGGATACTTAGGCTCTAAACTAG | 59.548 | 40.741 | 0.00 | 0.00 | 37.61 | 2.57 |
2090 | 2698 | 7.302948 | TGGATGGATACTTAGGCTCTAAACTA | 58.697 | 38.462 | 0.00 | 0.00 | 37.61 | 2.24 |
2091 | 2699 | 6.143915 | TGGATGGATACTTAGGCTCTAAACT | 58.856 | 40.000 | 0.00 | 0.00 | 37.61 | 2.66 |
2092 | 2700 | 6.420913 | TGGATGGATACTTAGGCTCTAAAC | 57.579 | 41.667 | 0.00 | 0.00 | 37.61 | 2.01 |
2093 | 2701 | 6.787458 | TGATGGATGGATACTTAGGCTCTAAA | 59.213 | 38.462 | 0.00 | 0.00 | 37.61 | 1.85 |
2094 | 2702 | 6.322931 | TGATGGATGGATACTTAGGCTCTAA | 58.677 | 40.000 | 0.00 | 0.00 | 37.61 | 2.10 |
2095 | 2703 | 5.903923 | TGATGGATGGATACTTAGGCTCTA | 58.096 | 41.667 | 0.00 | 0.00 | 37.61 | 2.43 |
2096 | 2704 | 4.756564 | TGATGGATGGATACTTAGGCTCT | 58.243 | 43.478 | 0.00 | 0.00 | 37.61 | 4.09 |
2097 | 2705 | 4.774726 | TCTGATGGATGGATACTTAGGCTC | 59.225 | 45.833 | 0.00 | 0.00 | 37.61 | 4.70 |
2098 | 2706 | 4.756564 | TCTGATGGATGGATACTTAGGCT | 58.243 | 43.478 | 0.00 | 0.00 | 37.61 | 4.58 |
2099 | 2707 | 5.486526 | CTTCTGATGGATGGATACTTAGGC | 58.513 | 45.833 | 0.00 | 0.00 | 37.61 | 3.93 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.