Multiple sequence alignment - TraesCS5B01G176400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G176400 chr5B 100.000 2744 0 0 1 2744 322288256 322290999 0.000000e+00 5068
1 TraesCS5B01G176400 chr5D 90.874 2049 113 26 17 2002 285022035 285024072 0.000000e+00 2680
2 TraesCS5B01G176400 chr5D 83.515 734 105 8 2 725 132930792 132931519 0.000000e+00 671
3 TraesCS5B01G176400 chr5D 85.061 656 95 3 16 669 444472794 444472140 0.000000e+00 665
4 TraesCS5B01G176400 chr5D 93.796 274 12 2 2031 2302 285024172 285024442 9.150000e-110 407
5 TraesCS5B01G176400 chr5A 91.442 1484 71 18 878 2310 376836647 376838125 0.000000e+00 1986
6 TraesCS5B01G176400 chr5A 94.570 221 12 0 2524 2744 552735881 552735661 2.620000e-90 342
7 TraesCS5B01G176400 chr4B 83.039 849 121 12 1 833 368069342 368070183 0.000000e+00 749
8 TraesCS5B01G176400 chr4B 91.845 233 15 4 1059 1290 277555389 277555160 3.410000e-84 322
9 TraesCS5B01G176400 chr4B 90.678 236 21 1 1055 1290 215633171 215633405 2.050000e-81 313
10 TraesCS5B01G176400 chr2D 86.556 662 82 6 1 658 507862377 507863035 0.000000e+00 723
11 TraesCS5B01G176400 chr2D 89.085 284 29 2 2462 2744 398301945 398302227 4.350000e-93 351
12 TraesCS5B01G176400 chr2D 90.909 88 6 2 2308 2393 589522253 589522340 1.730000e-22 117
13 TraesCS5B01G176400 chr3B 84.889 675 101 1 1 674 745520763 745521437 0.000000e+00 680
14 TraesCS5B01G176400 chr3B 96.939 294 8 1 2452 2744 83842260 83841967 2.460000e-135 492
15 TraesCS5B01G176400 chr3B 88.983 236 25 1 1055 1290 599757842 599757608 9.610000e-75 291
16 TraesCS5B01G176400 chr3D 84.559 680 90 10 1 670 598115162 598114488 0.000000e+00 660
17 TraesCS5B01G176400 chr3D 85.008 647 89 4 18 660 413655122 413654480 0.000000e+00 651
18 TraesCS5B01G176400 chr3D 91.986 287 10 3 2458 2744 541620568 541620841 9.210000e-105 390
19 TraesCS5B01G176400 chr3D 92.941 85 4 2 2308 2390 400683943 400684027 3.710000e-24 122
20 TraesCS5B01G176400 chrUn 85.116 645 85 7 17 660 50079236 50078602 0.000000e+00 649
21 TraesCS5B01G176400 chrUn 88.318 214 20 4 2467 2680 19739222 19739430 4.540000e-63 252
22 TraesCS5B01G176400 chr7B 84.000 700 87 12 18 695 426522734 426523430 0.000000e+00 649
23 TraesCS5B01G176400 chr7B 84.305 223 31 4 2458 2680 648443952 648443734 5.950000e-52 215
24 TraesCS5B01G176400 chr7B 96.104 77 3 0 2315 2391 594961162 594961086 2.870000e-25 126
25 TraesCS5B01G176400 chr1B 93.772 289 16 2 2456 2744 307423673 307423959 1.510000e-117 433
26 TraesCS5B01G176400 chr6B 90.254 236 22 1 1055 1290 62539630 62539396 9.550000e-80 307
27 TraesCS5B01G176400 chr6B 91.011 89 6 2 2307 2393 359864634 359864722 4.800000e-23 119
28 TraesCS5B01G176400 chr7A 88.614 202 23 0 2495 2696 717608822 717608621 2.110000e-61 246
29 TraesCS5B01G176400 chr7D 86.758 219 27 2 2462 2680 580780359 580780143 2.730000e-60 243
30 TraesCS5B01G176400 chr3A 91.954 87 5 2 2307 2391 75407969 75408055 1.330000e-23 121
31 TraesCS5B01G176400 chr3A 91.566 83 5 1 2310 2392 50435525 50435605 2.230000e-21 113
32 TraesCS5B01G176400 chr4D 90.110 91 7 2 2302 2390 469582266 469582356 1.730000e-22 117
33 TraesCS5B01G176400 chr1A 90.805 87 6 2 2308 2392 209362154 209362068 6.210000e-22 115
34 TraesCS5B01G176400 chr2B 90.000 90 5 3 2308 2393 788032267 788032178 2.230000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G176400 chr5B 322288256 322290999 2743 False 5068.0 5068 100.000 1 2744 1 chr5B.!!$F1 2743
1 TraesCS5B01G176400 chr5D 285022035 285024442 2407 False 1543.5 2680 92.335 17 2302 2 chr5D.!!$F2 2285
2 TraesCS5B01G176400 chr5D 132930792 132931519 727 False 671.0 671 83.515 2 725 1 chr5D.!!$F1 723
3 TraesCS5B01G176400 chr5D 444472140 444472794 654 True 665.0 665 85.061 16 669 1 chr5D.!!$R1 653
4 TraesCS5B01G176400 chr5A 376836647 376838125 1478 False 1986.0 1986 91.442 878 2310 1 chr5A.!!$F1 1432
5 TraesCS5B01G176400 chr4B 368069342 368070183 841 False 749.0 749 83.039 1 833 1 chr4B.!!$F2 832
6 TraesCS5B01G176400 chr2D 507862377 507863035 658 False 723.0 723 86.556 1 658 1 chr2D.!!$F2 657
7 TraesCS5B01G176400 chr3B 745520763 745521437 674 False 680.0 680 84.889 1 674 1 chr3B.!!$F1 673
8 TraesCS5B01G176400 chr3D 598114488 598115162 674 True 660.0 660 84.559 1 670 1 chr3D.!!$R2 669
9 TraesCS5B01G176400 chr3D 413654480 413655122 642 True 651.0 651 85.008 18 660 1 chr3D.!!$R1 642
10 TraesCS5B01G176400 chrUn 50078602 50079236 634 True 649.0 649 85.116 17 660 1 chrUn.!!$R1 643
11 TraesCS5B01G176400 chr7B 426522734 426523430 696 False 649.0 649 84.000 18 695 1 chr7B.!!$F1 677

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
819 889 0.318445 ACGGACGTCGGTTTGAGAAG 60.318 55.0 21.64 0.38 44.45 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2529 2718 0.033109 GGATTGGGTGGAAGGAAGGG 60.033 60.0 0.0 0.0 0.0 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 53 3.170362 CAGAAGGCCACTCCCCAA 58.830 61.111 5.01 0.00 34.51 4.12
78 82 1.052617 TTGAGACCGATGACCACCAA 58.947 50.000 0.00 0.00 0.00 3.67
111 115 8.416743 AGGGATACTACCTAGCTAATGGTATA 57.583 38.462 11.27 7.60 38.05 1.47
125 129 9.562226 AGCTAATGGTATATATCCTTAGTGGTT 57.438 33.333 15.41 2.52 37.07 3.67
155 159 1.597663 GAAGACAATACCCAATCCGCG 59.402 52.381 0.00 0.00 0.00 6.46
171 175 0.817634 CGCGAGGAGAGAGGAGACAT 60.818 60.000 0.00 0.00 0.00 3.06
399 416 0.885196 GGGTGAAAATGTTGCGCCTA 59.115 50.000 4.18 0.00 32.89 3.93
414 431 0.321298 GCCTAAGCACCAAGAACCGA 60.321 55.000 0.00 0.00 39.53 4.69
423 441 3.003897 GCACCAAGAACCGACAATGTTTA 59.996 43.478 0.00 0.00 0.00 2.01
491 511 4.634883 CACATGCAGCTCTAAGATGACTTT 59.365 41.667 0.00 0.00 32.38 2.66
506 526 3.016031 TGACTTTGTTGAGCACATGTGT 58.984 40.909 26.01 13.47 34.43 3.72
615 657 4.775058 TGTGTTTTTATTCGGATGTGGG 57.225 40.909 0.00 0.00 0.00 4.61
715 771 2.417719 GCTTCAACTACTGTGGTGGAG 58.582 52.381 1.51 1.12 0.00 3.86
716 772 2.417719 CTTCAACTACTGTGGTGGAGC 58.582 52.381 1.51 0.00 0.00 4.70
717 773 0.685097 TCAACTACTGTGGTGGAGCC 59.315 55.000 0.00 0.00 37.90 4.70
727 783 2.434185 GTGGAGCCGATGCGTTCA 60.434 61.111 0.00 0.00 44.33 3.18
730 786 2.125512 GAGCCGATGCGTTCACCT 60.126 61.111 0.00 0.00 44.33 4.00
742 798 1.885388 TTCACCTGTTGGACGCACG 60.885 57.895 0.00 0.00 37.04 5.34
765 821 3.866910 AGTCAGCGTAAACAGAAAAACGA 59.133 39.130 0.00 0.00 37.53 3.85
774 840 5.379732 AAACAGAAAAACGACACCTTTGA 57.620 34.783 0.00 0.00 0.00 2.69
786 852 2.226330 CACCTTTGACCGATCCAAACA 58.774 47.619 0.00 0.00 31.13 2.83
809 879 3.356145 ACAAAATTCAAAACGGACGTCG 58.644 40.909 9.92 7.64 45.88 5.12
819 889 0.318445 ACGGACGTCGGTTTGAGAAG 60.318 55.000 21.64 0.38 44.45 2.85
823 893 2.352421 GGACGTCGGTTTGAGAAGATGA 60.352 50.000 9.92 0.00 0.00 2.92
865 935 2.807045 GCTCCTGCTCGTGTCACG 60.807 66.667 19.38 19.38 44.19 4.35
1071 1152 0.251165 CCGATCTCTCTCCTCCTCCC 60.251 65.000 0.00 0.00 0.00 4.30
1074 1155 1.725169 ATCTCTCTCCTCCTCCCCCG 61.725 65.000 0.00 0.00 0.00 5.73
1305 1386 2.431782 CCCTCCCTGCATATTTGGTTTG 59.568 50.000 0.00 0.00 0.00 2.93
1314 1395 6.649973 CCTGCATATTTGGTTTGTTGATTTGA 59.350 34.615 0.00 0.00 0.00 2.69
1328 1409 5.046448 TGTTGATTTGATTTGGGGGATCTTG 60.046 40.000 0.00 0.00 0.00 3.02
1456 1537 3.601443 AGAAGAACGACAAGGGAGATG 57.399 47.619 0.00 0.00 0.00 2.90
1593 1680 4.981806 TCACCGATCCAATTTCCATTTC 57.018 40.909 0.00 0.00 0.00 2.17
1791 1899 0.034089 CCCTGGGGGTTCTGATTGTC 60.034 60.000 4.27 0.00 38.25 3.18
1976 2087 6.430616 CCAAATACCACCATCAAATTTGCTTT 59.569 34.615 13.54 0.00 36.61 3.51
2002 2113 4.326826 TCTTGTGGTGATCAGGTTCATTC 58.673 43.478 0.00 0.00 0.00 2.67
2004 2115 5.248248 TCTTGTGGTGATCAGGTTCATTCTA 59.752 40.000 0.00 0.00 0.00 2.10
2008 2119 5.295292 GTGGTGATCAGGTTCATTCTACATG 59.705 44.000 0.00 0.00 0.00 3.21
2131 2318 9.640963 AACAAGAAACACATAGACAGTAGTATC 57.359 33.333 0.00 0.00 0.00 2.24
2202 2389 1.404583 GGCAGCCAAATGGTCATGTTC 60.405 52.381 6.55 0.00 37.57 3.18
2223 2410 0.819259 TGTTTCAGAGCAGCGCCTTT 60.819 50.000 2.29 0.00 0.00 3.11
2264 2453 5.711976 CCAATGTTTTCTATCCAGTTCCAGT 59.288 40.000 0.00 0.00 0.00 4.00
2268 2457 3.895232 TTCTATCCAGTTCCAGTCAGC 57.105 47.619 0.00 0.00 0.00 4.26
2292 2481 6.368243 GCATAGATCATACTCCACACATGAAG 59.632 42.308 0.00 0.00 32.73 3.02
2310 2499 8.906867 CACATGAAGGTGGAAATATTTCATACT 58.093 33.333 25.55 17.36 36.61 2.12
2311 2500 9.125026 ACATGAAGGTGGAAATATTTCATACTC 57.875 33.333 25.55 17.73 36.61 2.59
2312 2501 8.571336 CATGAAGGTGGAAATATTTCATACTCC 58.429 37.037 25.55 18.26 36.61 3.85
2313 2502 7.638444 TGAAGGTGGAAATATTTCATACTCCA 58.362 34.615 25.55 13.91 38.92 3.86
2314 2503 8.281531 TGAAGGTGGAAATATTTCATACTCCAT 58.718 33.333 25.55 13.44 38.92 3.41
2315 2504 9.136323 GAAGGTGGAAATATTTCATACTCCATT 57.864 33.333 25.55 16.48 38.92 3.16
2316 2505 9.492730 AAGGTGGAAATATTTCATACTCCATTT 57.507 29.630 25.55 12.16 38.92 2.32
2395 2584 6.621316 TTCTTTATGGAGAGAGTACTAGCG 57.379 41.667 0.00 0.00 0.00 4.26
2396 2585 4.515944 TCTTTATGGAGAGAGTACTAGCGC 59.484 45.833 0.00 0.00 0.00 5.92
2397 2586 2.350057 ATGGAGAGAGTACTAGCGCA 57.650 50.000 11.47 0.00 0.00 6.09
2398 2587 1.669604 TGGAGAGAGTACTAGCGCAG 58.330 55.000 11.47 7.81 0.00 5.18
2399 2588 1.065345 TGGAGAGAGTACTAGCGCAGT 60.065 52.381 11.47 13.82 41.62 4.40
2400 2589 1.332375 GGAGAGAGTACTAGCGCAGTG 59.668 57.143 11.47 0.71 38.24 3.66
2401 2590 1.332375 GAGAGAGTACTAGCGCAGTGG 59.668 57.143 11.47 0.00 38.24 4.00
2402 2591 1.065345 AGAGAGTACTAGCGCAGTGGA 60.065 52.381 11.47 0.00 38.24 4.02
2403 2592 1.064357 GAGAGTACTAGCGCAGTGGAC 59.936 57.143 11.47 5.81 38.24 4.02
2404 2593 0.248134 GAGTACTAGCGCAGTGGACG 60.248 60.000 11.47 0.00 38.24 4.79
2405 2594 1.226603 GTACTAGCGCAGTGGACGG 60.227 63.158 11.47 0.00 38.24 4.79
2406 2595 2.412323 TACTAGCGCAGTGGACGGG 61.412 63.158 11.47 0.00 38.24 5.28
2407 2596 4.514577 CTAGCGCAGTGGACGGGG 62.515 72.222 11.47 0.00 0.00 5.73
2411 2600 2.593436 CGCAGTGGACGGGGTTTT 60.593 61.111 0.00 0.00 0.00 2.43
2412 2601 1.301874 CGCAGTGGACGGGGTTTTA 60.302 57.895 0.00 0.00 0.00 1.52
2413 2602 0.675522 CGCAGTGGACGGGGTTTTAT 60.676 55.000 0.00 0.00 0.00 1.40
2414 2603 1.405797 CGCAGTGGACGGGGTTTTATA 60.406 52.381 0.00 0.00 0.00 0.98
2415 2604 2.713877 GCAGTGGACGGGGTTTTATAA 58.286 47.619 0.00 0.00 0.00 0.98
2416 2605 2.421073 GCAGTGGACGGGGTTTTATAAC 59.579 50.000 0.00 0.00 0.00 1.89
2417 2606 3.677190 CAGTGGACGGGGTTTTATAACA 58.323 45.455 0.00 0.00 35.92 2.41
2418 2607 3.687698 CAGTGGACGGGGTTTTATAACAG 59.312 47.826 0.00 0.00 35.92 3.16
2419 2608 3.011818 GTGGACGGGGTTTTATAACAGG 58.988 50.000 0.00 0.00 35.92 4.00
2420 2609 2.911636 TGGACGGGGTTTTATAACAGGA 59.088 45.455 0.00 0.00 35.92 3.86
2421 2610 3.273434 GGACGGGGTTTTATAACAGGAC 58.727 50.000 0.00 0.00 35.92 3.85
2422 2611 3.307621 GGACGGGGTTTTATAACAGGACA 60.308 47.826 0.00 0.00 35.92 4.02
2423 2612 3.678289 ACGGGGTTTTATAACAGGACAC 58.322 45.455 0.00 0.00 35.92 3.67
2424 2613 3.072768 ACGGGGTTTTATAACAGGACACA 59.927 43.478 0.00 0.00 35.92 3.72
2425 2614 4.073549 CGGGGTTTTATAACAGGACACAA 58.926 43.478 0.00 0.00 35.92 3.33
2426 2615 4.155280 CGGGGTTTTATAACAGGACACAAG 59.845 45.833 0.00 0.00 35.92 3.16
2427 2616 5.318630 GGGGTTTTATAACAGGACACAAGA 58.681 41.667 0.00 0.00 35.92 3.02
2428 2617 5.182570 GGGGTTTTATAACAGGACACAAGAC 59.817 44.000 0.00 0.00 35.92 3.01
2429 2618 5.766174 GGGTTTTATAACAGGACACAAGACA 59.234 40.000 0.00 0.00 35.92 3.41
2430 2619 6.293790 GGGTTTTATAACAGGACACAAGACAC 60.294 42.308 0.00 0.00 35.92 3.67
2431 2620 6.261381 GGTTTTATAACAGGACACAAGACACA 59.739 38.462 0.00 0.00 35.92 3.72
2432 2621 6.854496 TTTATAACAGGACACAAGACACAC 57.146 37.500 0.00 0.00 0.00 3.82
2433 2622 2.779755 AACAGGACACAAGACACACA 57.220 45.000 0.00 0.00 0.00 3.72
2434 2623 2.024176 ACAGGACACAAGACACACAC 57.976 50.000 0.00 0.00 0.00 3.82
2435 2624 1.555075 ACAGGACACAAGACACACACT 59.445 47.619 0.00 0.00 0.00 3.55
2436 2625 2.027192 ACAGGACACAAGACACACACTT 60.027 45.455 0.00 0.00 0.00 3.16
2437 2626 2.609459 CAGGACACAAGACACACACTTC 59.391 50.000 0.00 0.00 0.00 3.01
2438 2627 2.236146 AGGACACAAGACACACACTTCA 59.764 45.455 0.00 0.00 0.00 3.02
2439 2628 2.351726 GGACACAAGACACACACTTCAC 59.648 50.000 0.00 0.00 0.00 3.18
2440 2629 2.351726 GACACAAGACACACACTTCACC 59.648 50.000 0.00 0.00 0.00 4.02
2441 2630 2.290008 ACACAAGACACACACTTCACCA 60.290 45.455 0.00 0.00 0.00 4.17
2442 2631 2.945008 CACAAGACACACACTTCACCAT 59.055 45.455 0.00 0.00 0.00 3.55
2443 2632 2.945008 ACAAGACACACACTTCACCATG 59.055 45.455 0.00 0.00 0.00 3.66
2444 2633 3.205338 CAAGACACACACTTCACCATGA 58.795 45.455 0.00 0.00 0.00 3.07
2445 2634 3.558931 AGACACACACTTCACCATGAA 57.441 42.857 0.00 0.00 34.79 2.57
2446 2635 3.884895 AGACACACACTTCACCATGAAA 58.115 40.909 0.00 0.00 35.73 2.69
2447 2636 4.269183 AGACACACACTTCACCATGAAAA 58.731 39.130 0.00 0.00 35.73 2.29
2448 2637 4.096382 AGACACACACTTCACCATGAAAAC 59.904 41.667 0.00 0.00 35.73 2.43
2449 2638 4.016444 ACACACACTTCACCATGAAAACT 58.984 39.130 0.00 0.00 35.73 2.66
2450 2639 4.142403 ACACACACTTCACCATGAAAACTG 60.142 41.667 0.00 0.00 35.73 3.16
2451 2640 3.381272 ACACACTTCACCATGAAAACTGG 59.619 43.478 0.00 0.00 35.73 4.00
2453 2642 4.023291 ACACTTCACCATGAAAACTGGTT 58.977 39.130 0.00 0.00 44.67 3.67
2454 2643 4.466015 ACACTTCACCATGAAAACTGGTTT 59.534 37.500 0.00 0.00 44.67 3.27
2455 2644 5.046663 ACACTTCACCATGAAAACTGGTTTT 60.047 36.000 10.67 10.67 44.67 2.43
2465 2654 4.682778 AAAACTGGTTTTCCTTAAGGCC 57.317 40.909 17.32 12.38 38.27 5.19
2466 2655 3.612795 AACTGGTTTTCCTTAAGGCCT 57.387 42.857 17.32 0.00 41.38 5.19
2467 2656 3.612795 ACTGGTTTTCCTTAAGGCCTT 57.387 42.857 24.18 24.18 41.38 4.35
2468 2657 3.230976 ACTGGTTTTCCTTAAGGCCTTG 58.769 45.455 28.77 12.21 41.38 3.61
2469 2658 3.230976 CTGGTTTTCCTTAAGGCCTTGT 58.769 45.455 28.77 4.97 41.38 3.16
2470 2659 3.641436 CTGGTTTTCCTTAAGGCCTTGTT 59.359 43.478 28.77 4.09 41.38 2.83
2471 2660 4.034410 TGGTTTTCCTTAAGGCCTTGTTT 58.966 39.130 28.77 3.65 41.38 2.83
2472 2661 4.141824 TGGTTTTCCTTAAGGCCTTGTTTG 60.142 41.667 28.77 13.35 41.38 2.93
2473 2662 4.377021 GTTTTCCTTAAGGCCTTGTTTGG 58.623 43.478 28.77 21.53 34.44 3.28
2474 2663 3.322191 TTCCTTAAGGCCTTGTTTGGT 57.678 42.857 28.77 1.45 34.44 3.67
2475 2664 4.456662 TTCCTTAAGGCCTTGTTTGGTA 57.543 40.909 28.77 14.20 34.44 3.25
2476 2665 4.028993 TCCTTAAGGCCTTGTTTGGTAG 57.971 45.455 28.77 12.24 34.44 3.18
2477 2666 3.653836 TCCTTAAGGCCTTGTTTGGTAGA 59.346 43.478 28.77 10.01 34.44 2.59
2478 2667 4.105057 TCCTTAAGGCCTTGTTTGGTAGAA 59.895 41.667 28.77 9.73 34.44 2.10
2479 2668 4.459337 CCTTAAGGCCTTGTTTGGTAGAAG 59.541 45.833 28.77 18.33 0.00 2.85
2480 2669 3.595190 AAGGCCTTGTTTGGTAGAAGT 57.405 42.857 19.73 0.00 0.00 3.01
2481 2670 2.863809 AGGCCTTGTTTGGTAGAAGTG 58.136 47.619 0.00 0.00 0.00 3.16
2482 2671 1.886542 GGCCTTGTTTGGTAGAAGTGG 59.113 52.381 0.00 0.00 0.00 4.00
2483 2672 2.488347 GGCCTTGTTTGGTAGAAGTGGA 60.488 50.000 0.00 0.00 0.00 4.02
2484 2673 3.421844 GCCTTGTTTGGTAGAAGTGGAT 58.578 45.455 0.00 0.00 0.00 3.41
2485 2674 3.826729 GCCTTGTTTGGTAGAAGTGGATT 59.173 43.478 0.00 0.00 0.00 3.01
2486 2675 4.321230 GCCTTGTTTGGTAGAAGTGGATTG 60.321 45.833 0.00 0.00 0.00 2.67
2487 2676 4.218417 CCTTGTTTGGTAGAAGTGGATTGG 59.782 45.833 0.00 0.00 0.00 3.16
2488 2677 3.761897 TGTTTGGTAGAAGTGGATTGGG 58.238 45.455 0.00 0.00 0.00 4.12
2489 2678 3.089284 GTTTGGTAGAAGTGGATTGGGG 58.911 50.000 0.00 0.00 0.00 4.96
2490 2679 2.352561 TGGTAGAAGTGGATTGGGGA 57.647 50.000 0.00 0.00 0.00 4.81
2491 2680 2.196595 TGGTAGAAGTGGATTGGGGAG 58.803 52.381 0.00 0.00 0.00 4.30
2492 2681 1.490910 GGTAGAAGTGGATTGGGGAGG 59.509 57.143 0.00 0.00 0.00 4.30
2493 2682 2.197465 GTAGAAGTGGATTGGGGAGGT 58.803 52.381 0.00 0.00 0.00 3.85
2494 2683 1.760405 AGAAGTGGATTGGGGAGGTT 58.240 50.000 0.00 0.00 0.00 3.50
2495 2684 2.073776 AGAAGTGGATTGGGGAGGTTT 58.926 47.619 0.00 0.00 0.00 3.27
2496 2685 3.265489 AGAAGTGGATTGGGGAGGTTTA 58.735 45.455 0.00 0.00 0.00 2.01
2497 2686 3.858638 AGAAGTGGATTGGGGAGGTTTAT 59.141 43.478 0.00 0.00 0.00 1.40
2498 2687 3.669939 AGTGGATTGGGGAGGTTTATG 57.330 47.619 0.00 0.00 0.00 1.90
2499 2688 2.244769 AGTGGATTGGGGAGGTTTATGG 59.755 50.000 0.00 0.00 0.00 2.74
2500 2689 2.243736 GTGGATTGGGGAGGTTTATGGA 59.756 50.000 0.00 0.00 0.00 3.41
2501 2690 2.513738 TGGATTGGGGAGGTTTATGGAG 59.486 50.000 0.00 0.00 0.00 3.86
2502 2691 2.158460 GGATTGGGGAGGTTTATGGAGG 60.158 54.545 0.00 0.00 0.00 4.30
2503 2692 2.068831 TTGGGGAGGTTTATGGAGGT 57.931 50.000 0.00 0.00 0.00 3.85
2504 2693 1.295020 TGGGGAGGTTTATGGAGGTG 58.705 55.000 0.00 0.00 0.00 4.00
2505 2694 0.551396 GGGGAGGTTTATGGAGGTGG 59.449 60.000 0.00 0.00 0.00 4.61
2506 2695 0.551396 GGGAGGTTTATGGAGGTGGG 59.449 60.000 0.00 0.00 0.00 4.61
2507 2696 0.551396 GGAGGTTTATGGAGGTGGGG 59.449 60.000 0.00 0.00 0.00 4.96
2508 2697 1.591768 GAGGTTTATGGAGGTGGGGA 58.408 55.000 0.00 0.00 0.00 4.81
2509 2698 2.136026 GAGGTTTATGGAGGTGGGGAT 58.864 52.381 0.00 0.00 0.00 3.85
2510 2699 2.514160 GAGGTTTATGGAGGTGGGGATT 59.486 50.000 0.00 0.00 0.00 3.01
2511 2700 2.933139 AGGTTTATGGAGGTGGGGATTT 59.067 45.455 0.00 0.00 0.00 2.17
2512 2701 3.339742 AGGTTTATGGAGGTGGGGATTTT 59.660 43.478 0.00 0.00 0.00 1.82
2513 2702 4.546605 AGGTTTATGGAGGTGGGGATTTTA 59.453 41.667 0.00 0.00 0.00 1.52
2514 2703 4.893524 GGTTTATGGAGGTGGGGATTTTAG 59.106 45.833 0.00 0.00 0.00 1.85
2515 2704 4.806952 TTATGGAGGTGGGGATTTTAGG 57.193 45.455 0.00 0.00 0.00 2.69
2516 2705 1.304891 TGGAGGTGGGGATTTTAGGG 58.695 55.000 0.00 0.00 0.00 3.53
2517 2706 0.556258 GGAGGTGGGGATTTTAGGGG 59.444 60.000 0.00 0.00 0.00 4.79
2518 2707 1.603634 GAGGTGGGGATTTTAGGGGA 58.396 55.000 0.00 0.00 0.00 4.81
2519 2708 2.144450 GAGGTGGGGATTTTAGGGGAT 58.856 52.381 0.00 0.00 0.00 3.85
2520 2709 2.518407 GAGGTGGGGATTTTAGGGGATT 59.482 50.000 0.00 0.00 0.00 3.01
2521 2710 2.940033 AGGTGGGGATTTTAGGGGATTT 59.060 45.455 0.00 0.00 0.00 2.17
2522 2711 3.038280 GGTGGGGATTTTAGGGGATTTG 58.962 50.000 0.00 0.00 0.00 2.32
2523 2712 3.038280 GTGGGGATTTTAGGGGATTTGG 58.962 50.000 0.00 0.00 0.00 3.28
2524 2713 2.662633 TGGGGATTTTAGGGGATTTGGT 59.337 45.455 0.00 0.00 0.00 3.67
2525 2714 3.038280 GGGGATTTTAGGGGATTTGGTG 58.962 50.000 0.00 0.00 0.00 4.17
2526 2715 3.310288 GGGGATTTTAGGGGATTTGGTGA 60.310 47.826 0.00 0.00 0.00 4.02
2527 2716 4.358214 GGGATTTTAGGGGATTTGGTGAA 58.642 43.478 0.00 0.00 0.00 3.18
2528 2717 4.968719 GGGATTTTAGGGGATTTGGTGAAT 59.031 41.667 0.00 0.00 0.00 2.57
2529 2718 5.070446 GGGATTTTAGGGGATTTGGTGAATC 59.930 44.000 0.00 0.00 42.84 2.52
2538 2727 4.991153 GATTTGGTGAATCCCTTCCTTC 57.009 45.455 0.00 0.00 38.57 3.46
2539 2728 2.899303 TTGGTGAATCCCTTCCTTCC 57.101 50.000 0.00 0.00 34.77 3.46
2540 2729 1.753903 TGGTGAATCCCTTCCTTCCA 58.246 50.000 0.00 0.00 34.77 3.53
2541 2730 1.354368 TGGTGAATCCCTTCCTTCCAC 59.646 52.381 0.00 0.00 34.77 4.02
2542 2731 1.341089 GGTGAATCCCTTCCTTCCACC 60.341 57.143 0.00 0.00 0.00 4.61
2543 2732 0.999712 TGAATCCCTTCCTTCCACCC 59.000 55.000 0.00 0.00 0.00 4.61
2544 2733 0.999712 GAATCCCTTCCTTCCACCCA 59.000 55.000 0.00 0.00 0.00 4.51
2545 2734 1.357761 GAATCCCTTCCTTCCACCCAA 59.642 52.381 0.00 0.00 0.00 4.12
2546 2735 1.698874 ATCCCTTCCTTCCACCCAAT 58.301 50.000 0.00 0.00 0.00 3.16
2547 2736 0.999712 TCCCTTCCTTCCACCCAATC 59.000 55.000 0.00 0.00 0.00 2.67
2548 2737 0.033109 CCCTTCCTTCCACCCAATCC 60.033 60.000 0.00 0.00 0.00 3.01
2549 2738 0.033109 CCTTCCTTCCACCCAATCCC 60.033 60.000 0.00 0.00 0.00 3.85
2550 2739 0.033109 CTTCCTTCCACCCAATCCCC 60.033 60.000 0.00 0.00 0.00 4.81
2551 2740 0.479589 TTCCTTCCACCCAATCCCCT 60.480 55.000 0.00 0.00 0.00 4.79
2552 2741 0.919289 TCCTTCCACCCAATCCCCTC 60.919 60.000 0.00 0.00 0.00 4.30
2553 2742 1.214305 CCTTCCACCCAATCCCCTCA 61.214 60.000 0.00 0.00 0.00 3.86
2554 2743 0.704076 CTTCCACCCAATCCCCTCAA 59.296 55.000 0.00 0.00 0.00 3.02
2555 2744 1.077005 CTTCCACCCAATCCCCTCAAA 59.923 52.381 0.00 0.00 0.00 2.69
2556 2745 0.407918 TCCACCCAATCCCCTCAAAC 59.592 55.000 0.00 0.00 0.00 2.93
2557 2746 0.614697 CCACCCAATCCCCTCAAACC 60.615 60.000 0.00 0.00 0.00 3.27
2558 2747 0.614697 CACCCAATCCCCTCAAACCC 60.615 60.000 0.00 0.00 0.00 4.11
2559 2748 1.001631 CCCAATCCCCTCAAACCCC 59.998 63.158 0.00 0.00 0.00 4.95
2560 2749 1.001631 CCAATCCCCTCAAACCCCC 59.998 63.158 0.00 0.00 0.00 5.40
2561 2750 1.518431 CCAATCCCCTCAAACCCCCT 61.518 60.000 0.00 0.00 0.00 4.79
2562 2751 0.413434 CAATCCCCTCAAACCCCCTT 59.587 55.000 0.00 0.00 0.00 3.95
2563 2752 0.413434 AATCCCCTCAAACCCCCTTG 59.587 55.000 0.00 0.00 0.00 3.61
2564 2753 0.479589 ATCCCCTCAAACCCCCTTGA 60.480 55.000 0.00 0.00 34.22 3.02
2565 2754 0.703056 TCCCCTCAAACCCCCTTGAA 60.703 55.000 0.00 0.00 34.96 2.69
2566 2755 0.189822 CCCCTCAAACCCCCTTGAAA 59.810 55.000 0.00 0.00 34.96 2.69
2567 2756 1.338107 CCCTCAAACCCCCTTGAAAC 58.662 55.000 0.00 0.00 34.96 2.78
2568 2757 1.338107 CCTCAAACCCCCTTGAAACC 58.662 55.000 0.00 0.00 34.96 3.27
2569 2758 1.133167 CCTCAAACCCCCTTGAAACCT 60.133 52.381 0.00 0.00 34.96 3.50
2570 2759 2.239400 CTCAAACCCCCTTGAAACCTC 58.761 52.381 0.00 0.00 34.96 3.85
2571 2760 1.133294 TCAAACCCCCTTGAAACCTCC 60.133 52.381 0.00 0.00 32.39 4.30
2572 2761 0.938192 AAACCCCCTTGAAACCTCCA 59.062 50.000 0.00 0.00 0.00 3.86
2573 2762 0.938192 AACCCCCTTGAAACCTCCAA 59.062 50.000 0.00 0.00 0.00 3.53
2574 2763 0.938192 ACCCCCTTGAAACCTCCAAA 59.062 50.000 0.00 0.00 0.00 3.28
2575 2764 1.338107 CCCCCTTGAAACCTCCAAAC 58.662 55.000 0.00 0.00 0.00 2.93
2576 2765 1.338107 CCCCTTGAAACCTCCAAACC 58.662 55.000 0.00 0.00 0.00 3.27
2577 2766 1.338107 CCCTTGAAACCTCCAAACCC 58.662 55.000 0.00 0.00 0.00 4.11
2578 2767 1.338107 CCTTGAAACCTCCAAACCCC 58.662 55.000 0.00 0.00 0.00 4.95
2579 2768 1.133167 CCTTGAAACCTCCAAACCCCT 60.133 52.381 0.00 0.00 0.00 4.79
2580 2769 2.239400 CTTGAAACCTCCAAACCCCTC 58.761 52.381 0.00 0.00 0.00 4.30
2581 2770 0.481128 TGAAACCTCCAAACCCCTCC 59.519 55.000 0.00 0.00 0.00 4.30
2582 2771 0.481128 GAAACCTCCAAACCCCTCCA 59.519 55.000 0.00 0.00 0.00 3.86
2583 2772 0.482887 AAACCTCCAAACCCCTCCAG 59.517 55.000 0.00 0.00 0.00 3.86
2584 2773 2.081585 AACCTCCAAACCCCTCCAGC 62.082 60.000 0.00 0.00 0.00 4.85
2585 2774 2.356667 CTCCAAACCCCTCCAGCC 59.643 66.667 0.00 0.00 0.00 4.85
2586 2775 2.451493 TCCAAACCCCTCCAGCCA 60.451 61.111 0.00 0.00 0.00 4.75
2587 2776 2.036256 CCAAACCCCTCCAGCCAG 59.964 66.667 0.00 0.00 0.00 4.85
2588 2777 2.538141 CCAAACCCCTCCAGCCAGA 61.538 63.158 0.00 0.00 0.00 3.86
2589 2778 1.460255 CAAACCCCTCCAGCCAGAA 59.540 57.895 0.00 0.00 0.00 3.02
2590 2779 0.040204 CAAACCCCTCCAGCCAGAAT 59.960 55.000 0.00 0.00 0.00 2.40
2591 2780 0.332972 AAACCCCTCCAGCCAGAATC 59.667 55.000 0.00 0.00 0.00 2.52
2592 2781 1.575447 AACCCCTCCAGCCAGAATCC 61.575 60.000 0.00 0.00 0.00 3.01
2593 2782 2.761465 CCCCTCCAGCCAGAATCCC 61.761 68.421 0.00 0.00 0.00 3.85
2594 2783 2.761465 CCCTCCAGCCAGAATCCCC 61.761 68.421 0.00 0.00 0.00 4.81
2595 2784 1.695597 CCTCCAGCCAGAATCCCCT 60.696 63.158 0.00 0.00 0.00 4.79
2596 2785 1.284841 CCTCCAGCCAGAATCCCCTT 61.285 60.000 0.00 0.00 0.00 3.95
2597 2786 0.182299 CTCCAGCCAGAATCCCCTTC 59.818 60.000 0.00 0.00 0.00 3.46
2598 2787 0.549902 TCCAGCCAGAATCCCCTTCA 60.550 55.000 0.00 0.00 36.24 3.02
2599 2788 0.554792 CCAGCCAGAATCCCCTTCAT 59.445 55.000 0.00 0.00 36.24 2.57
2600 2789 1.776667 CCAGCCAGAATCCCCTTCATA 59.223 52.381 0.00 0.00 36.24 2.15
2601 2790 2.377869 CCAGCCAGAATCCCCTTCATAT 59.622 50.000 0.00 0.00 36.24 1.78
2602 2791 3.418995 CAGCCAGAATCCCCTTCATATG 58.581 50.000 0.00 0.00 36.24 1.78
2603 2792 2.377869 AGCCAGAATCCCCTTCATATGG 59.622 50.000 2.13 0.00 36.24 2.74
2604 2793 2.376518 GCCAGAATCCCCTTCATATGGA 59.623 50.000 2.13 0.00 36.24 3.41
2605 2794 3.181429 GCCAGAATCCCCTTCATATGGAA 60.181 47.826 2.13 0.00 36.24 3.53
2606 2795 4.692496 GCCAGAATCCCCTTCATATGGAAA 60.692 45.833 2.13 0.00 36.24 3.13
2607 2796 5.457686 CCAGAATCCCCTTCATATGGAAAA 58.542 41.667 2.13 0.00 36.24 2.29
2608 2797 5.302823 CCAGAATCCCCTTCATATGGAAAAC 59.697 44.000 2.13 0.00 36.24 2.43
2609 2798 6.131961 CAGAATCCCCTTCATATGGAAAACT 58.868 40.000 2.13 0.00 36.24 2.66
2610 2799 6.608808 CAGAATCCCCTTCATATGGAAAACTT 59.391 38.462 2.13 0.00 36.24 2.66
2611 2800 6.608808 AGAATCCCCTTCATATGGAAAACTTG 59.391 38.462 2.13 0.00 36.24 3.16
2612 2801 5.269554 TCCCCTTCATATGGAAAACTTGT 57.730 39.130 2.13 0.00 34.44 3.16
2613 2802 5.650283 TCCCCTTCATATGGAAAACTTGTT 58.350 37.500 2.13 0.00 34.44 2.83
2614 2803 6.081356 TCCCCTTCATATGGAAAACTTGTTT 58.919 36.000 2.13 0.00 34.44 2.83
2615 2804 6.014669 TCCCCTTCATATGGAAAACTTGTTTG 60.015 38.462 2.13 0.00 34.44 2.93
2616 2805 6.014669 CCCCTTCATATGGAAAACTTGTTTGA 60.015 38.462 2.13 0.00 34.44 2.69
2617 2806 7.310609 CCCCTTCATATGGAAAACTTGTTTGAT 60.311 37.037 2.13 0.00 34.44 2.57
2618 2807 8.748412 CCCTTCATATGGAAAACTTGTTTGATA 58.252 33.333 2.13 0.00 34.44 2.15
2619 2808 9.793252 CCTTCATATGGAAAACTTGTTTGATAG 57.207 33.333 2.13 0.00 34.44 2.08
2620 2809 9.793252 CTTCATATGGAAAACTTGTTTGATAGG 57.207 33.333 2.13 0.75 34.44 2.57
2621 2810 7.771183 TCATATGGAAAACTTGTTTGATAGGC 58.229 34.615 2.13 0.00 0.00 3.93
2622 2811 7.395772 TCATATGGAAAACTTGTTTGATAGGCA 59.604 33.333 2.13 0.00 0.00 4.75
2623 2812 5.860941 TGGAAAACTTGTTTGATAGGCAA 57.139 34.783 0.00 0.00 33.88 4.52
2624 2813 5.841810 TGGAAAACTTGTTTGATAGGCAAG 58.158 37.500 0.00 0.00 43.56 4.01
2625 2814 5.221422 TGGAAAACTTGTTTGATAGGCAAGG 60.221 40.000 8.14 0.00 42.60 3.61
2626 2815 5.010617 GGAAAACTTGTTTGATAGGCAAGGA 59.989 40.000 8.14 0.00 42.60 3.36
2627 2816 6.295292 GGAAAACTTGTTTGATAGGCAAGGAT 60.295 38.462 8.14 0.00 42.60 3.24
2628 2817 6.670695 AAACTTGTTTGATAGGCAAGGATT 57.329 33.333 8.14 1.28 42.60 3.01
2629 2818 7.775053 AAACTTGTTTGATAGGCAAGGATTA 57.225 32.000 8.14 0.00 42.60 1.75
2630 2819 6.759497 ACTTGTTTGATAGGCAAGGATTAC 57.241 37.500 8.14 0.00 42.60 1.89
2631 2820 5.652452 ACTTGTTTGATAGGCAAGGATTACC 59.348 40.000 8.14 0.00 42.60 2.85
2632 2821 5.186256 TGTTTGATAGGCAAGGATTACCA 57.814 39.130 0.00 0.00 32.43 3.25
2633 2822 5.765510 TGTTTGATAGGCAAGGATTACCAT 58.234 37.500 0.00 0.00 32.43 3.55
2634 2823 6.905736 TGTTTGATAGGCAAGGATTACCATA 58.094 36.000 0.00 0.00 32.43 2.74
2635 2824 7.526041 TGTTTGATAGGCAAGGATTACCATAT 58.474 34.615 0.00 0.00 32.43 1.78
2636 2825 8.004215 TGTTTGATAGGCAAGGATTACCATATT 58.996 33.333 0.00 0.00 32.43 1.28
2637 2826 8.515414 GTTTGATAGGCAAGGATTACCATATTC 58.485 37.037 0.00 0.00 32.43 1.75
2638 2827 7.574021 TGATAGGCAAGGATTACCATATTCT 57.426 36.000 0.00 0.00 32.43 2.40
2639 2828 7.397221 TGATAGGCAAGGATTACCATATTCTG 58.603 38.462 0.00 0.00 32.43 3.02
2640 2829 5.912149 AGGCAAGGATTACCATATTCTGA 57.088 39.130 0.00 0.00 32.43 3.27
2641 2830 6.460103 AGGCAAGGATTACCATATTCTGAT 57.540 37.500 0.00 0.00 32.43 2.90
2642 2831 7.574021 AGGCAAGGATTACCATATTCTGATA 57.426 36.000 0.00 0.00 32.43 2.15
2643 2832 7.988937 AGGCAAGGATTACCATATTCTGATAA 58.011 34.615 0.00 0.00 32.43 1.75
2644 2833 8.105829 AGGCAAGGATTACCATATTCTGATAAG 58.894 37.037 0.00 0.00 32.43 1.73
2645 2834 8.103305 GGCAAGGATTACCATATTCTGATAAGA 58.897 37.037 0.00 0.00 38.94 2.10
2646 2835 9.678260 GCAAGGATTACCATATTCTGATAAGAT 57.322 33.333 0.00 0.00 38.94 2.40
2655 2844 9.277783 ACCATATTCTGATAAGATAGTGCAAAC 57.722 33.333 0.00 0.00 0.00 2.93
2656 2845 9.276590 CCATATTCTGATAAGATAGTGCAAACA 57.723 33.333 0.00 0.00 0.00 2.83
2659 2848 8.743085 ATTCTGATAAGATAGTGCAAACATGT 57.257 30.769 0.00 0.00 0.00 3.21
2660 2849 9.836864 ATTCTGATAAGATAGTGCAAACATGTA 57.163 29.630 0.00 0.00 0.00 2.29
2661 2850 9.665719 TTCTGATAAGATAGTGCAAACATGTAA 57.334 29.630 0.00 0.00 0.00 2.41
2662 2851 9.665719 TCTGATAAGATAGTGCAAACATGTAAA 57.334 29.630 0.00 0.00 0.00 2.01
2667 2856 7.816945 AGATAGTGCAAACATGTAAAAATGC 57.183 32.000 0.00 6.19 0.00 3.56
2668 2857 7.377398 AGATAGTGCAAACATGTAAAAATGCA 58.623 30.769 14.99 14.99 41.08 3.96
2669 2858 7.871973 AGATAGTGCAAACATGTAAAAATGCAA 59.128 29.630 18.51 9.52 44.39 4.08
2670 2859 6.864360 AGTGCAAACATGTAAAAATGCAAT 57.136 29.167 18.51 16.14 44.39 3.56
2671 2860 6.890558 AGTGCAAACATGTAAAAATGCAATC 58.109 32.000 18.51 11.17 44.39 2.67
2672 2861 6.707161 AGTGCAAACATGTAAAAATGCAATCT 59.293 30.769 18.51 12.61 44.39 2.40
2673 2862 7.227116 AGTGCAAACATGTAAAAATGCAATCTT 59.773 29.630 18.51 7.76 44.39 2.40
2674 2863 7.856894 GTGCAAACATGTAAAAATGCAATCTTT 59.143 29.630 18.51 0.00 44.39 2.52
2675 2864 9.049523 TGCAAACATGTAAAAATGCAATCTTTA 57.950 25.926 16.03 0.00 40.47 1.85
2676 2865 9.316859 GCAAACATGTAAAAATGCAATCTTTAC 57.683 29.630 16.12 16.12 39.56 2.01
2707 2896 8.899427 AGACAATATCTTATCACAATCCACTG 57.101 34.615 0.00 0.00 31.62 3.66
2708 2897 8.708378 AGACAATATCTTATCACAATCCACTGA 58.292 33.333 0.00 0.00 31.62 3.41
2709 2898 9.330063 GACAATATCTTATCACAATCCACTGAA 57.670 33.333 0.00 0.00 0.00 3.02
2710 2899 9.113838 ACAATATCTTATCACAATCCACTGAAC 57.886 33.333 0.00 0.00 0.00 3.18
2711 2900 8.562892 CAATATCTTATCACAATCCACTGAACC 58.437 37.037 0.00 0.00 0.00 3.62
2712 2901 5.497464 TCTTATCACAATCCACTGAACCA 57.503 39.130 0.00 0.00 0.00 3.67
2713 2902 6.065976 TCTTATCACAATCCACTGAACCAT 57.934 37.500 0.00 0.00 0.00 3.55
2714 2903 6.115446 TCTTATCACAATCCACTGAACCATC 58.885 40.000 0.00 0.00 0.00 3.51
2715 2904 4.581309 ATCACAATCCACTGAACCATCT 57.419 40.909 0.00 0.00 0.00 2.90
2716 2905 3.942829 TCACAATCCACTGAACCATCTC 58.057 45.455 0.00 0.00 0.00 2.75
2717 2906 3.584406 TCACAATCCACTGAACCATCTCT 59.416 43.478 0.00 0.00 0.00 3.10
2718 2907 3.937706 CACAATCCACTGAACCATCTCTC 59.062 47.826 0.00 0.00 0.00 3.20
2719 2908 3.843027 ACAATCCACTGAACCATCTCTCT 59.157 43.478 0.00 0.00 0.00 3.10
2720 2909 4.081198 ACAATCCACTGAACCATCTCTCTC 60.081 45.833 0.00 0.00 0.00 3.20
2721 2910 3.175438 TCCACTGAACCATCTCTCTCA 57.825 47.619 0.00 0.00 0.00 3.27
2722 2911 2.828520 TCCACTGAACCATCTCTCTCAC 59.171 50.000 0.00 0.00 0.00 3.51
2723 2912 2.830923 CCACTGAACCATCTCTCTCACT 59.169 50.000 0.00 0.00 0.00 3.41
2724 2913 3.368220 CCACTGAACCATCTCTCTCACTG 60.368 52.174 0.00 0.00 0.00 3.66
2725 2914 2.830923 ACTGAACCATCTCTCTCACTGG 59.169 50.000 0.00 0.00 34.84 4.00
2726 2915 3.095332 CTGAACCATCTCTCTCACTGGA 58.905 50.000 0.00 0.00 32.92 3.86
2727 2916 2.828520 TGAACCATCTCTCTCACTGGAC 59.171 50.000 0.00 0.00 32.92 4.02
2728 2917 2.612285 ACCATCTCTCTCACTGGACA 57.388 50.000 0.00 0.00 32.92 4.02
2729 2918 2.455557 ACCATCTCTCTCACTGGACAG 58.544 52.381 0.00 0.00 32.92 3.51
2730 2919 2.225242 ACCATCTCTCTCACTGGACAGT 60.225 50.000 0.00 0.00 43.61 3.55
2731 2920 2.426738 CCATCTCTCTCACTGGACAGTC 59.573 54.545 1.21 0.00 40.20 3.51
2732 2921 2.959465 TCTCTCTCACTGGACAGTCA 57.041 50.000 1.21 0.00 40.20 3.41
2733 2922 3.448093 TCTCTCTCACTGGACAGTCAT 57.552 47.619 1.21 0.00 40.20 3.06
2734 2923 3.087781 TCTCTCTCACTGGACAGTCATG 58.912 50.000 1.21 0.00 40.20 3.07
2735 2924 3.087781 CTCTCTCACTGGACAGTCATGA 58.912 50.000 1.21 0.00 40.20 3.07
2736 2925 3.500343 TCTCTCACTGGACAGTCATGAA 58.500 45.455 1.21 0.00 40.20 2.57
2737 2926 3.897505 TCTCTCACTGGACAGTCATGAAA 59.102 43.478 1.21 0.00 40.20 2.69
2738 2927 4.344968 TCTCTCACTGGACAGTCATGAAAA 59.655 41.667 1.21 0.00 40.20 2.29
2739 2928 4.380531 TCTCACTGGACAGTCATGAAAAC 58.619 43.478 1.21 0.00 40.20 2.43
2740 2929 4.101585 TCTCACTGGACAGTCATGAAAACT 59.898 41.667 1.21 0.00 40.20 2.66
2741 2930 5.304357 TCTCACTGGACAGTCATGAAAACTA 59.696 40.000 1.21 0.00 40.20 2.24
2742 2931 5.924356 TCACTGGACAGTCATGAAAACTAA 58.076 37.500 1.21 0.00 40.20 2.24
2743 2932 6.353323 TCACTGGACAGTCATGAAAACTAAA 58.647 36.000 1.21 0.00 40.20 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 71 3.443681 CCCTTGTTGTATTGGTGGTCATC 59.556 47.826 0.00 0.00 0.00 2.92
78 82 6.382925 AGCTAGGTAGTATCCCTTGTTGTAT 58.617 40.000 0.00 0.00 33.35 2.29
111 115 8.375493 TCACAAGAGTTAACCACTAAGGATAT 57.625 34.615 0.88 0.00 41.22 1.63
125 129 6.428083 TGGGTATTGTCTTCACAAGAGTTA 57.572 37.500 0.00 0.00 45.85 2.24
155 159 5.278957 GCAAATCTATGTCTCCTCTCTCCTC 60.279 48.000 0.00 0.00 0.00 3.71
164 168 2.225467 GCTGGGCAAATCTATGTCTCC 58.775 52.381 0.00 0.00 0.00 3.71
186 195 3.176924 TCCTTCCTAGCACTCTCTTGT 57.823 47.619 0.00 0.00 0.00 3.16
279 296 5.762218 CAGTCATCACCTCTCAAAACTTCTT 59.238 40.000 0.00 0.00 0.00 2.52
341 358 2.991190 GTCGTAAATGATGTCACCACGT 59.009 45.455 10.60 0.00 32.76 4.49
399 416 1.608590 CATTGTCGGTTCTTGGTGCTT 59.391 47.619 0.00 0.00 0.00 3.91
444 462 4.821260 AGTATGCCAATCACGCATTTCATA 59.179 37.500 0.00 0.00 44.48 2.15
506 526 1.604308 CTGGTTGCCCATGTGAGCA 60.604 57.895 0.00 0.00 40.90 4.26
515 535 2.693074 CCCATACATTTACTGGTTGCCC 59.307 50.000 0.00 0.00 0.00 5.36
715 771 2.325082 AACAGGTGAACGCATCGGC 61.325 57.895 0.00 0.00 0.00 5.54
716 772 1.497278 CAACAGGTGAACGCATCGG 59.503 57.895 0.00 0.00 0.00 4.18
717 773 0.948623 TCCAACAGGTGAACGCATCG 60.949 55.000 0.00 0.00 0.00 3.84
727 783 2.029073 CTCGTGCGTCCAACAGGT 59.971 61.111 0.00 0.00 0.00 4.00
730 786 1.299850 CTGACTCGTGCGTCCAACA 60.300 57.895 0.00 0.00 32.97 3.33
742 798 4.026310 TCGTTTTTCTGTTTACGCTGACTC 60.026 41.667 0.00 0.00 34.24 3.36
751 807 6.316319 GTCAAAGGTGTCGTTTTTCTGTTTA 58.684 36.000 0.00 0.00 0.00 2.01
765 821 2.227194 GTTTGGATCGGTCAAAGGTGT 58.773 47.619 0.00 0.00 35.16 4.16
774 840 4.582656 TGAATTTTGTCTGTTTGGATCGGT 59.417 37.500 0.00 0.00 0.00 4.69
786 852 4.594136 GACGTCCGTTTTGAATTTTGTCT 58.406 39.130 3.51 0.00 0.00 3.41
809 879 4.646572 ACTCCAACTCATCTTCTCAAACC 58.353 43.478 0.00 0.00 0.00 3.27
819 889 3.350219 TTAGGCCAACTCCAACTCATC 57.650 47.619 5.01 0.00 0.00 2.92
823 893 3.806949 TGAATTAGGCCAACTCCAACT 57.193 42.857 5.01 0.00 0.00 3.16
854 924 0.453615 CTCTCTCACGTGACACGAGC 60.454 60.000 33.12 0.00 46.05 5.03
865 935 3.627395 TGGACTCTCTCTCTCTCTCAC 57.373 52.381 0.00 0.00 0.00 3.51
941 1019 4.644234 CCCAATTGTTTTTGCTTCCCTTTT 59.356 37.500 4.43 0.00 0.00 2.27
1071 1152 2.187946 GGATGTGGAGACAGCGGG 59.812 66.667 0.00 0.00 44.46 6.13
1074 1155 0.249657 GGATCGGATGTGGAGACAGC 60.250 60.000 0.00 0.00 44.46 4.40
1197 1278 4.408821 ATGCGGCCGGAGAAGCAA 62.409 61.111 29.38 0.00 43.19 3.91
1305 1386 5.187576 TCAAGATCCCCCAAATCAAATCAAC 59.812 40.000 0.00 0.00 0.00 3.18
1314 1395 0.395724 GCCGTCAAGATCCCCCAAAT 60.396 55.000 0.00 0.00 0.00 2.32
1593 1680 1.005867 GTGCTGGCAATTGTGGTGG 60.006 57.895 7.40 0.00 0.00 4.61
1655 1744 0.979665 CTCTGCAGGAGGAAACCAGA 59.020 55.000 15.13 0.00 38.35 3.86
1657 1746 1.376466 GCTCTGCAGGAGGAAACCA 59.624 57.895 15.13 0.00 42.08 3.67
1791 1899 1.152631 ACAGGGGAAACAAACGGGG 60.153 57.895 0.00 0.00 0.00 5.73
1903 2011 4.503123 GCCCCAGAAGTTTGTGCTAATTTT 60.503 41.667 0.00 0.00 0.00 1.82
1967 2078 8.149647 TGATCACCACAAGAATAAAAGCAAATT 58.850 29.630 0.00 0.00 0.00 1.82
1976 2087 5.875224 TGAACCTGATCACCACAAGAATAA 58.125 37.500 0.00 0.00 0.00 1.40
2002 2113 6.432472 TGAGTATCCTCTAGATGCACATGTAG 59.568 42.308 0.00 8.18 39.87 2.74
2004 2115 5.143369 TGAGTATCCTCTAGATGCACATGT 58.857 41.667 0.00 0.00 39.87 3.21
2153 2340 1.922570 CGGTCTGATCTTAACCACCG 58.077 55.000 10.86 0.00 40.73 4.94
2202 2389 1.136147 GGCGCTGCTCTGAAACATG 59.864 57.895 7.64 0.00 0.00 3.21
2223 2410 5.670485 ACATTGGCGTGTCATCTTTATCTA 58.330 37.500 0.00 0.00 0.00 1.98
2264 2453 4.895297 TGTGTGGAGTATGATCTATGCTGA 59.105 41.667 0.00 0.00 31.34 4.26
2268 2457 6.872547 CCTTCATGTGTGGAGTATGATCTATG 59.127 42.308 0.00 0.00 31.54 2.23
2369 2558 8.784994 CGCTAGTACTCTCTCCATAAAGAAATA 58.215 37.037 0.00 0.00 0.00 1.40
2370 2559 7.653647 CGCTAGTACTCTCTCCATAAAGAAAT 58.346 38.462 0.00 0.00 0.00 2.17
2371 2560 6.459848 GCGCTAGTACTCTCTCCATAAAGAAA 60.460 42.308 0.00 0.00 0.00 2.52
2372 2561 5.008811 GCGCTAGTACTCTCTCCATAAAGAA 59.991 44.000 0.00 0.00 0.00 2.52
2373 2562 4.515944 GCGCTAGTACTCTCTCCATAAAGA 59.484 45.833 0.00 0.00 0.00 2.52
2374 2563 4.276183 TGCGCTAGTACTCTCTCCATAAAG 59.724 45.833 9.73 0.00 0.00 1.85
2375 2564 4.204799 TGCGCTAGTACTCTCTCCATAAA 58.795 43.478 9.73 0.00 0.00 1.40
2376 2565 3.815962 CTGCGCTAGTACTCTCTCCATAA 59.184 47.826 9.73 0.00 0.00 1.90
2377 2566 3.181453 ACTGCGCTAGTACTCTCTCCATA 60.181 47.826 9.73 0.00 38.04 2.74
2378 2567 2.226330 CTGCGCTAGTACTCTCTCCAT 58.774 52.381 9.73 0.00 0.00 3.41
2379 2568 1.065345 ACTGCGCTAGTACTCTCTCCA 60.065 52.381 9.73 0.00 38.04 3.86
2380 2569 1.332375 CACTGCGCTAGTACTCTCTCC 59.668 57.143 9.73 0.00 37.60 3.71
2381 2570 1.332375 CCACTGCGCTAGTACTCTCTC 59.668 57.143 9.73 0.00 37.60 3.20
2382 2571 1.065345 TCCACTGCGCTAGTACTCTCT 60.065 52.381 9.73 0.00 37.60 3.10
2383 2572 1.064357 GTCCACTGCGCTAGTACTCTC 59.936 57.143 9.73 0.00 37.60 3.20
2384 2573 1.096416 GTCCACTGCGCTAGTACTCT 58.904 55.000 9.73 0.00 37.60 3.24
2385 2574 0.248134 CGTCCACTGCGCTAGTACTC 60.248 60.000 9.73 3.75 37.60 2.59
2386 2575 1.654954 CCGTCCACTGCGCTAGTACT 61.655 60.000 9.73 0.00 37.60 2.73
2387 2576 1.226603 CCGTCCACTGCGCTAGTAC 60.227 63.158 9.73 5.96 37.60 2.73
2388 2577 2.412323 CCCGTCCACTGCGCTAGTA 61.412 63.158 9.73 0.00 37.60 1.82
2389 2578 3.760035 CCCGTCCACTGCGCTAGT 61.760 66.667 9.73 7.89 41.36 2.57
2390 2579 4.514577 CCCCGTCCACTGCGCTAG 62.515 72.222 9.73 7.16 0.00 3.42
2394 2583 0.675522 ATAAAACCCCGTCCACTGCG 60.676 55.000 0.00 0.00 0.00 5.18
2395 2584 2.406596 TATAAAACCCCGTCCACTGC 57.593 50.000 0.00 0.00 0.00 4.40
2396 2585 3.677190 TGTTATAAAACCCCGTCCACTG 58.323 45.455 0.00 0.00 34.49 3.66
2397 2586 3.307904 CCTGTTATAAAACCCCGTCCACT 60.308 47.826 0.00 0.00 34.49 4.00
2398 2587 3.011818 CCTGTTATAAAACCCCGTCCAC 58.988 50.000 0.00 0.00 34.49 4.02
2399 2588 2.911636 TCCTGTTATAAAACCCCGTCCA 59.088 45.455 0.00 0.00 34.49 4.02
2400 2589 3.273434 GTCCTGTTATAAAACCCCGTCC 58.727 50.000 0.00 0.00 34.49 4.79
2401 2590 3.686241 GTGTCCTGTTATAAAACCCCGTC 59.314 47.826 0.00 0.00 34.49 4.79
2402 2591 3.072768 TGTGTCCTGTTATAAAACCCCGT 59.927 43.478 0.00 0.00 34.49 5.28
2403 2592 3.677190 TGTGTCCTGTTATAAAACCCCG 58.323 45.455 0.00 0.00 34.49 5.73
2404 2593 5.182570 GTCTTGTGTCCTGTTATAAAACCCC 59.817 44.000 0.00 0.00 34.49 4.95
2405 2594 5.766174 TGTCTTGTGTCCTGTTATAAAACCC 59.234 40.000 0.00 0.00 34.49 4.11
2406 2595 6.261381 TGTGTCTTGTGTCCTGTTATAAAACC 59.739 38.462 0.00 0.00 34.49 3.27
2407 2596 7.130269 GTGTGTCTTGTGTCCTGTTATAAAAC 58.870 38.462 0.00 0.00 36.07 2.43
2408 2597 6.824196 TGTGTGTCTTGTGTCCTGTTATAAAA 59.176 34.615 0.00 0.00 0.00 1.52
2409 2598 6.259167 GTGTGTGTCTTGTGTCCTGTTATAAA 59.741 38.462 0.00 0.00 0.00 1.40
2410 2599 5.756347 GTGTGTGTCTTGTGTCCTGTTATAA 59.244 40.000 0.00 0.00 0.00 0.98
2411 2600 5.069914 AGTGTGTGTCTTGTGTCCTGTTATA 59.930 40.000 0.00 0.00 0.00 0.98
2412 2601 4.127171 GTGTGTGTCTTGTGTCCTGTTAT 58.873 43.478 0.00 0.00 0.00 1.89
2413 2602 3.196901 AGTGTGTGTCTTGTGTCCTGTTA 59.803 43.478 0.00 0.00 0.00 2.41
2414 2603 2.027192 AGTGTGTGTCTTGTGTCCTGTT 60.027 45.455 0.00 0.00 0.00 3.16
2415 2604 1.555075 AGTGTGTGTCTTGTGTCCTGT 59.445 47.619 0.00 0.00 0.00 4.00
2416 2605 2.315925 AGTGTGTGTCTTGTGTCCTG 57.684 50.000 0.00 0.00 0.00 3.86
2417 2606 2.236146 TGAAGTGTGTGTCTTGTGTCCT 59.764 45.455 0.00 0.00 0.00 3.85
2418 2607 2.351726 GTGAAGTGTGTGTCTTGTGTCC 59.648 50.000 0.00 0.00 0.00 4.02
2419 2608 2.351726 GGTGAAGTGTGTGTCTTGTGTC 59.648 50.000 0.00 0.00 0.00 3.67
2420 2609 2.290008 TGGTGAAGTGTGTGTCTTGTGT 60.290 45.455 0.00 0.00 0.00 3.72
2421 2610 2.355197 TGGTGAAGTGTGTGTCTTGTG 58.645 47.619 0.00 0.00 0.00 3.33
2422 2611 2.779755 TGGTGAAGTGTGTGTCTTGT 57.220 45.000 0.00 0.00 0.00 3.16
2423 2612 3.205338 TCATGGTGAAGTGTGTGTCTTG 58.795 45.455 0.00 0.00 0.00 3.02
2424 2613 3.558931 TCATGGTGAAGTGTGTGTCTT 57.441 42.857 0.00 0.00 0.00 3.01
2425 2614 3.558931 TTCATGGTGAAGTGTGTGTCT 57.441 42.857 0.00 0.00 31.83 3.41
2426 2615 4.096382 AGTTTTCATGGTGAAGTGTGTGTC 59.904 41.667 0.00 0.00 37.70 3.67
2427 2616 4.016444 AGTTTTCATGGTGAAGTGTGTGT 58.984 39.130 0.00 0.00 37.70 3.72
2428 2617 4.353737 CAGTTTTCATGGTGAAGTGTGTG 58.646 43.478 0.00 0.00 37.70 3.82
2429 2618 3.381272 CCAGTTTTCATGGTGAAGTGTGT 59.619 43.478 0.00 0.00 37.70 3.72
2430 2619 3.968649 CCAGTTTTCATGGTGAAGTGTG 58.031 45.455 0.00 0.00 37.70 3.82
2444 2633 4.295201 AGGCCTTAAGGAAAACCAGTTTT 58.705 39.130 26.21 8.19 44.59 2.43
2445 2634 3.923648 AGGCCTTAAGGAAAACCAGTTT 58.076 40.909 26.21 0.00 37.39 2.66
2446 2635 3.612795 AGGCCTTAAGGAAAACCAGTT 57.387 42.857 26.21 0.00 37.39 3.16
2447 2636 3.230976 CAAGGCCTTAAGGAAAACCAGT 58.769 45.455 26.21 6.05 37.39 4.00
2448 2637 3.230976 ACAAGGCCTTAAGGAAAACCAG 58.769 45.455 26.21 14.36 37.39 4.00
2449 2638 3.322191 ACAAGGCCTTAAGGAAAACCA 57.678 42.857 26.21 0.00 37.39 3.67
2450 2639 4.377021 CAAACAAGGCCTTAAGGAAAACC 58.623 43.478 26.21 16.04 37.39 3.27
2451 2640 4.141801 ACCAAACAAGGCCTTAAGGAAAAC 60.142 41.667 26.21 11.27 37.39 2.43
2452 2641 4.034410 ACCAAACAAGGCCTTAAGGAAAA 58.966 39.130 26.21 0.00 37.39 2.29
2453 2642 3.648739 ACCAAACAAGGCCTTAAGGAAA 58.351 40.909 26.21 0.00 37.39 3.13
2454 2643 3.322191 ACCAAACAAGGCCTTAAGGAA 57.678 42.857 26.21 0.00 37.39 3.36
2455 2644 3.653836 TCTACCAAACAAGGCCTTAAGGA 59.346 43.478 26.21 5.43 37.39 3.36
2456 2645 4.028993 TCTACCAAACAAGGCCTTAAGG 57.971 45.455 20.00 17.81 38.53 2.69
2457 2646 5.048713 CACTTCTACCAAACAAGGCCTTAAG 60.049 44.000 20.00 16.58 0.00 1.85
2458 2647 4.825085 CACTTCTACCAAACAAGGCCTTAA 59.175 41.667 20.00 4.43 0.00 1.85
2459 2648 4.394729 CACTTCTACCAAACAAGGCCTTA 58.605 43.478 20.00 0.00 0.00 2.69
2460 2649 3.222603 CACTTCTACCAAACAAGGCCTT 58.777 45.455 13.78 13.78 0.00 4.35
2461 2650 2.489073 CCACTTCTACCAAACAAGGCCT 60.489 50.000 0.00 0.00 0.00 5.19
2462 2651 1.886542 CCACTTCTACCAAACAAGGCC 59.113 52.381 0.00 0.00 0.00 5.19
2463 2652 2.858745 TCCACTTCTACCAAACAAGGC 58.141 47.619 0.00 0.00 0.00 4.35
2464 2653 4.218417 CCAATCCACTTCTACCAAACAAGG 59.782 45.833 0.00 0.00 0.00 3.61
2465 2654 4.218417 CCCAATCCACTTCTACCAAACAAG 59.782 45.833 0.00 0.00 0.00 3.16
2466 2655 4.148838 CCCAATCCACTTCTACCAAACAA 58.851 43.478 0.00 0.00 0.00 2.83
2467 2656 3.499563 CCCCAATCCACTTCTACCAAACA 60.500 47.826 0.00 0.00 0.00 2.83
2468 2657 3.089284 CCCCAATCCACTTCTACCAAAC 58.911 50.000 0.00 0.00 0.00 2.93
2469 2658 2.990284 TCCCCAATCCACTTCTACCAAA 59.010 45.455 0.00 0.00 0.00 3.28
2470 2659 2.576191 CTCCCCAATCCACTTCTACCAA 59.424 50.000 0.00 0.00 0.00 3.67
2471 2660 2.196595 CTCCCCAATCCACTTCTACCA 58.803 52.381 0.00 0.00 0.00 3.25
2472 2661 1.490910 CCTCCCCAATCCACTTCTACC 59.509 57.143 0.00 0.00 0.00 3.18
2473 2662 2.197465 ACCTCCCCAATCCACTTCTAC 58.803 52.381 0.00 0.00 0.00 2.59
2474 2663 2.661176 ACCTCCCCAATCCACTTCTA 57.339 50.000 0.00 0.00 0.00 2.10
2475 2664 1.760405 AACCTCCCCAATCCACTTCT 58.240 50.000 0.00 0.00 0.00 2.85
2476 2665 2.604912 AAACCTCCCCAATCCACTTC 57.395 50.000 0.00 0.00 0.00 3.01
2477 2666 3.309848 CCATAAACCTCCCCAATCCACTT 60.310 47.826 0.00 0.00 0.00 3.16
2478 2667 2.244769 CCATAAACCTCCCCAATCCACT 59.755 50.000 0.00 0.00 0.00 4.00
2479 2668 2.243736 TCCATAAACCTCCCCAATCCAC 59.756 50.000 0.00 0.00 0.00 4.02
2480 2669 2.513738 CTCCATAAACCTCCCCAATCCA 59.486 50.000 0.00 0.00 0.00 3.41
2481 2670 2.158460 CCTCCATAAACCTCCCCAATCC 60.158 54.545 0.00 0.00 0.00 3.01
2482 2671 2.514160 ACCTCCATAAACCTCCCCAATC 59.486 50.000 0.00 0.00 0.00 2.67
2483 2672 2.244769 CACCTCCATAAACCTCCCCAAT 59.755 50.000 0.00 0.00 0.00 3.16
2484 2673 1.638589 CACCTCCATAAACCTCCCCAA 59.361 52.381 0.00 0.00 0.00 4.12
2485 2674 1.295020 CACCTCCATAAACCTCCCCA 58.705 55.000 0.00 0.00 0.00 4.96
2486 2675 0.551396 CCACCTCCATAAACCTCCCC 59.449 60.000 0.00 0.00 0.00 4.81
2487 2676 0.551396 CCCACCTCCATAAACCTCCC 59.449 60.000 0.00 0.00 0.00 4.30
2488 2677 0.551396 CCCCACCTCCATAAACCTCC 59.449 60.000 0.00 0.00 0.00 4.30
2489 2678 1.591768 TCCCCACCTCCATAAACCTC 58.408 55.000 0.00 0.00 0.00 3.85
2490 2679 2.303660 ATCCCCACCTCCATAAACCT 57.696 50.000 0.00 0.00 0.00 3.50
2491 2680 3.398318 AAATCCCCACCTCCATAAACC 57.602 47.619 0.00 0.00 0.00 3.27
2492 2681 4.893524 CCTAAAATCCCCACCTCCATAAAC 59.106 45.833 0.00 0.00 0.00 2.01
2493 2682 4.078863 CCCTAAAATCCCCACCTCCATAAA 60.079 45.833 0.00 0.00 0.00 1.40
2494 2683 3.465588 CCCTAAAATCCCCACCTCCATAA 59.534 47.826 0.00 0.00 0.00 1.90
2495 2684 3.060611 CCCTAAAATCCCCACCTCCATA 58.939 50.000 0.00 0.00 0.00 2.74
2496 2685 1.859574 CCCTAAAATCCCCACCTCCAT 59.140 52.381 0.00 0.00 0.00 3.41
2497 2686 1.304891 CCCTAAAATCCCCACCTCCA 58.695 55.000 0.00 0.00 0.00 3.86
2498 2687 0.556258 CCCCTAAAATCCCCACCTCC 59.444 60.000 0.00 0.00 0.00 4.30
2499 2688 1.603634 TCCCCTAAAATCCCCACCTC 58.396 55.000 0.00 0.00 0.00 3.85
2500 2689 2.320613 ATCCCCTAAAATCCCCACCT 57.679 50.000 0.00 0.00 0.00 4.00
2501 2690 3.038280 CAAATCCCCTAAAATCCCCACC 58.962 50.000 0.00 0.00 0.00 4.61
2502 2691 3.038280 CCAAATCCCCTAAAATCCCCAC 58.962 50.000 0.00 0.00 0.00 4.61
2503 2692 2.662633 ACCAAATCCCCTAAAATCCCCA 59.337 45.455 0.00 0.00 0.00 4.96
2504 2693 3.038280 CACCAAATCCCCTAAAATCCCC 58.962 50.000 0.00 0.00 0.00 4.81
2505 2694 3.989056 TCACCAAATCCCCTAAAATCCC 58.011 45.455 0.00 0.00 0.00 3.85
2506 2695 6.161855 GATTCACCAAATCCCCTAAAATCC 57.838 41.667 0.00 0.00 38.27 3.01
2517 2706 3.701542 GGAAGGAAGGGATTCACCAAATC 59.298 47.826 0.00 0.00 42.68 2.17
2518 2707 3.077391 TGGAAGGAAGGGATTCACCAAAT 59.923 43.478 0.00 0.00 41.20 2.32
2519 2708 2.448961 TGGAAGGAAGGGATTCACCAAA 59.551 45.455 0.00 0.00 41.20 3.28
2520 2709 2.069775 TGGAAGGAAGGGATTCACCAA 58.930 47.619 0.00 0.00 41.20 3.67
2521 2710 1.354368 GTGGAAGGAAGGGATTCACCA 59.646 52.381 0.00 0.00 41.20 4.17
2522 2711 1.341089 GGTGGAAGGAAGGGATTCACC 60.341 57.143 0.00 0.00 38.08 4.02
2523 2712 1.341089 GGGTGGAAGGAAGGGATTCAC 60.341 57.143 0.00 0.00 0.00 3.18
2524 2713 0.999712 GGGTGGAAGGAAGGGATTCA 59.000 55.000 0.00 0.00 0.00 2.57
2525 2714 0.999712 TGGGTGGAAGGAAGGGATTC 59.000 55.000 0.00 0.00 0.00 2.52
2526 2715 1.466858 TTGGGTGGAAGGAAGGGATT 58.533 50.000 0.00 0.00 0.00 3.01
2527 2716 1.570979 GATTGGGTGGAAGGAAGGGAT 59.429 52.381 0.00 0.00 0.00 3.85
2528 2717 0.999712 GATTGGGTGGAAGGAAGGGA 59.000 55.000 0.00 0.00 0.00 4.20
2529 2718 0.033109 GGATTGGGTGGAAGGAAGGG 60.033 60.000 0.00 0.00 0.00 3.95
2530 2719 0.033109 GGGATTGGGTGGAAGGAAGG 60.033 60.000 0.00 0.00 0.00 3.46
2531 2720 0.033109 GGGGATTGGGTGGAAGGAAG 60.033 60.000 0.00 0.00 0.00 3.46
2532 2721 0.479589 AGGGGATTGGGTGGAAGGAA 60.480 55.000 0.00 0.00 0.00 3.36
2533 2722 0.919289 GAGGGGATTGGGTGGAAGGA 60.919 60.000 0.00 0.00 0.00 3.36
2534 2723 1.214305 TGAGGGGATTGGGTGGAAGG 61.214 60.000 0.00 0.00 0.00 3.46
2535 2724 0.704076 TTGAGGGGATTGGGTGGAAG 59.296 55.000 0.00 0.00 0.00 3.46
2536 2725 1.162505 TTTGAGGGGATTGGGTGGAA 58.837 50.000 0.00 0.00 0.00 3.53
2537 2726 0.407918 GTTTGAGGGGATTGGGTGGA 59.592 55.000 0.00 0.00 0.00 4.02
2538 2727 0.614697 GGTTTGAGGGGATTGGGTGG 60.615 60.000 0.00 0.00 0.00 4.61
2539 2728 0.614697 GGGTTTGAGGGGATTGGGTG 60.615 60.000 0.00 0.00 0.00 4.61
2540 2729 1.781001 GGGTTTGAGGGGATTGGGT 59.219 57.895 0.00 0.00 0.00 4.51
2541 2730 1.001631 GGGGTTTGAGGGGATTGGG 59.998 63.158 0.00 0.00 0.00 4.12
2542 2731 1.001631 GGGGGTTTGAGGGGATTGG 59.998 63.158 0.00 0.00 0.00 3.16
2543 2732 0.413434 AAGGGGGTTTGAGGGGATTG 59.587 55.000 0.00 0.00 0.00 2.67
2544 2733 0.413434 CAAGGGGGTTTGAGGGGATT 59.587 55.000 0.00 0.00 0.00 3.01
2545 2734 0.479589 TCAAGGGGGTTTGAGGGGAT 60.480 55.000 0.00 0.00 32.39 3.85
2546 2735 0.703056 TTCAAGGGGGTTTGAGGGGA 60.703 55.000 0.00 0.00 38.25 4.81
2547 2736 0.189822 TTTCAAGGGGGTTTGAGGGG 59.810 55.000 0.00 0.00 38.25 4.79
2548 2737 1.338107 GTTTCAAGGGGGTTTGAGGG 58.662 55.000 0.00 0.00 38.25 4.30
2549 2738 1.133167 AGGTTTCAAGGGGGTTTGAGG 60.133 52.381 0.00 0.00 38.25 3.86
2550 2739 2.239400 GAGGTTTCAAGGGGGTTTGAG 58.761 52.381 0.00 0.00 38.25 3.02
2551 2740 1.133294 GGAGGTTTCAAGGGGGTTTGA 60.133 52.381 0.00 0.00 35.38 2.69
2552 2741 1.338107 GGAGGTTTCAAGGGGGTTTG 58.662 55.000 0.00 0.00 0.00 2.93
2553 2742 0.938192 TGGAGGTTTCAAGGGGGTTT 59.062 50.000 0.00 0.00 0.00 3.27
2554 2743 0.938192 TTGGAGGTTTCAAGGGGGTT 59.062 50.000 0.00 0.00 0.00 4.11
2555 2744 0.938192 TTTGGAGGTTTCAAGGGGGT 59.062 50.000 0.00 0.00 0.00 4.95
2556 2745 1.338107 GTTTGGAGGTTTCAAGGGGG 58.662 55.000 0.00 0.00 0.00 5.40
2557 2746 1.338107 GGTTTGGAGGTTTCAAGGGG 58.662 55.000 0.00 0.00 0.00 4.79
2558 2747 1.338107 GGGTTTGGAGGTTTCAAGGG 58.662 55.000 0.00 0.00 0.00 3.95
2559 2748 1.133167 AGGGGTTTGGAGGTTTCAAGG 60.133 52.381 0.00 0.00 0.00 3.61
2560 2749 2.239400 GAGGGGTTTGGAGGTTTCAAG 58.761 52.381 0.00 0.00 0.00 3.02
2561 2750 1.133294 GGAGGGGTTTGGAGGTTTCAA 60.133 52.381 0.00 0.00 0.00 2.69
2562 2751 0.481128 GGAGGGGTTTGGAGGTTTCA 59.519 55.000 0.00 0.00 0.00 2.69
2563 2752 0.481128 TGGAGGGGTTTGGAGGTTTC 59.519 55.000 0.00 0.00 0.00 2.78
2564 2753 0.482887 CTGGAGGGGTTTGGAGGTTT 59.517 55.000 0.00 0.00 0.00 3.27
2565 2754 2.081585 GCTGGAGGGGTTTGGAGGTT 62.082 60.000 0.00 0.00 0.00 3.50
2566 2755 2.539081 GCTGGAGGGGTTTGGAGGT 61.539 63.158 0.00 0.00 0.00 3.85
2567 2756 2.356667 GCTGGAGGGGTTTGGAGG 59.643 66.667 0.00 0.00 0.00 4.30
2568 2757 2.356667 GGCTGGAGGGGTTTGGAG 59.643 66.667 0.00 0.00 0.00 3.86
2569 2758 2.451493 TGGCTGGAGGGGTTTGGA 60.451 61.111 0.00 0.00 0.00 3.53
2570 2759 2.036256 CTGGCTGGAGGGGTTTGG 59.964 66.667 0.00 0.00 0.00 3.28
2571 2760 0.040204 ATTCTGGCTGGAGGGGTTTG 59.960 55.000 0.00 0.00 0.00 2.93
2572 2761 0.332972 GATTCTGGCTGGAGGGGTTT 59.667 55.000 0.00 0.00 0.00 3.27
2573 2762 1.575447 GGATTCTGGCTGGAGGGGTT 61.575 60.000 0.00 0.00 0.00 4.11
2574 2763 2.003548 GGATTCTGGCTGGAGGGGT 61.004 63.158 0.00 0.00 0.00 4.95
2575 2764 2.761465 GGGATTCTGGCTGGAGGGG 61.761 68.421 0.00 0.00 0.00 4.79
2576 2765 2.761465 GGGGATTCTGGCTGGAGGG 61.761 68.421 0.00 0.00 0.00 4.30
2577 2766 1.284841 AAGGGGATTCTGGCTGGAGG 61.285 60.000 0.00 0.00 0.00 4.30
2578 2767 0.182299 GAAGGGGATTCTGGCTGGAG 59.818 60.000 0.00 0.00 34.86 3.86
2579 2768 0.549902 TGAAGGGGATTCTGGCTGGA 60.550 55.000 0.00 0.00 38.83 3.86
2580 2769 0.554792 ATGAAGGGGATTCTGGCTGG 59.445 55.000 0.00 0.00 38.83 4.85
2581 2770 3.418995 CATATGAAGGGGATTCTGGCTG 58.581 50.000 0.00 0.00 38.83 4.85
2582 2771 2.377869 CCATATGAAGGGGATTCTGGCT 59.622 50.000 3.65 0.00 38.83 4.75
2583 2772 2.376518 TCCATATGAAGGGGATTCTGGC 59.623 50.000 3.65 0.00 38.83 4.85
2584 2773 4.729552 TTCCATATGAAGGGGATTCTGG 57.270 45.455 3.65 0.00 38.83 3.86
2585 2774 6.131961 AGTTTTCCATATGAAGGGGATTCTG 58.868 40.000 3.65 0.00 38.83 3.02
2586 2775 6.347061 AGTTTTCCATATGAAGGGGATTCT 57.653 37.500 3.65 0.00 38.83 2.40
2587 2776 6.381133 ACAAGTTTTCCATATGAAGGGGATTC 59.619 38.462 3.65 0.00 38.50 2.52
2588 2777 6.263754 ACAAGTTTTCCATATGAAGGGGATT 58.736 36.000 3.65 0.00 33.63 3.01
2589 2778 5.842339 ACAAGTTTTCCATATGAAGGGGAT 58.158 37.500 3.65 0.00 33.63 3.85
2590 2779 5.269554 ACAAGTTTTCCATATGAAGGGGA 57.730 39.130 3.65 0.00 33.63 4.81
2591 2780 6.014669 TCAAACAAGTTTTCCATATGAAGGGG 60.015 38.462 3.65 0.00 33.63 4.79
2592 2781 6.991938 TCAAACAAGTTTTCCATATGAAGGG 58.008 36.000 3.65 0.00 33.63 3.95
2593 2782 9.793252 CTATCAAACAAGTTTTCCATATGAAGG 57.207 33.333 3.65 0.00 33.63 3.46
2594 2783 9.793252 CCTATCAAACAAGTTTTCCATATGAAG 57.207 33.333 3.65 0.00 33.63 3.02
2595 2784 8.250332 GCCTATCAAACAAGTTTTCCATATGAA 58.750 33.333 3.65 0.00 0.00 2.57
2596 2785 7.395772 TGCCTATCAAACAAGTTTTCCATATGA 59.604 33.333 3.65 0.00 0.00 2.15
2597 2786 7.546358 TGCCTATCAAACAAGTTTTCCATATG 58.454 34.615 0.00 0.00 0.00 1.78
2598 2787 7.716799 TGCCTATCAAACAAGTTTTCCATAT 57.283 32.000 0.00 0.00 0.00 1.78
2599 2788 7.309744 CCTTGCCTATCAAACAAGTTTTCCATA 60.310 37.037 0.00 0.00 39.30 2.74
2600 2789 6.418057 TTGCCTATCAAACAAGTTTTCCAT 57.582 33.333 0.00 0.00 0.00 3.41
2601 2790 5.221422 CCTTGCCTATCAAACAAGTTTTCCA 60.221 40.000 0.00 0.00 39.30 3.53
2602 2791 5.010617 TCCTTGCCTATCAAACAAGTTTTCC 59.989 40.000 0.00 0.00 39.30 3.13
2603 2792 6.084326 TCCTTGCCTATCAAACAAGTTTTC 57.916 37.500 0.00 0.00 39.30 2.29
2604 2793 6.670695 ATCCTTGCCTATCAAACAAGTTTT 57.329 33.333 0.00 0.00 39.30 2.43
2605 2794 6.670695 AATCCTTGCCTATCAAACAAGTTT 57.329 33.333 0.00 0.00 39.30 2.66
2606 2795 6.152831 GGTAATCCTTGCCTATCAAACAAGTT 59.847 38.462 0.00 0.00 39.30 2.66
2607 2796 5.652452 GGTAATCCTTGCCTATCAAACAAGT 59.348 40.000 0.00 0.00 39.30 3.16
2608 2797 5.652014 TGGTAATCCTTGCCTATCAAACAAG 59.348 40.000 0.00 0.00 40.36 3.16
2609 2798 5.575157 TGGTAATCCTTGCCTATCAAACAA 58.425 37.500 0.00 0.00 36.27 2.83
2610 2799 5.186256 TGGTAATCCTTGCCTATCAAACA 57.814 39.130 0.00 0.00 36.27 2.83
2611 2800 8.409358 AATATGGTAATCCTTGCCTATCAAAC 57.591 34.615 0.00 0.00 36.27 2.93
2612 2801 8.448008 AGAATATGGTAATCCTTGCCTATCAAA 58.552 33.333 0.00 0.00 36.27 2.69
2613 2802 7.884877 CAGAATATGGTAATCCTTGCCTATCAA 59.115 37.037 0.00 0.00 36.27 2.57
2614 2803 7.237471 TCAGAATATGGTAATCCTTGCCTATCA 59.763 37.037 0.00 0.00 36.27 2.15
2615 2804 7.624549 TCAGAATATGGTAATCCTTGCCTATC 58.375 38.462 0.00 0.00 36.27 2.08
2616 2805 7.574021 TCAGAATATGGTAATCCTTGCCTAT 57.426 36.000 0.00 0.00 36.27 2.57
2617 2806 7.574021 ATCAGAATATGGTAATCCTTGCCTA 57.426 36.000 0.00 0.00 36.27 3.93
2618 2807 5.912149 TCAGAATATGGTAATCCTTGCCT 57.088 39.130 0.00 0.00 36.27 4.75
2619 2808 8.103305 TCTTATCAGAATATGGTAATCCTTGCC 58.897 37.037 0.00 0.00 33.97 4.52
2620 2809 9.678260 ATCTTATCAGAATATGGTAATCCTTGC 57.322 33.333 0.00 0.00 33.97 4.01
2629 2818 9.277783 GTTTGCACTATCTTATCAGAATATGGT 57.722 33.333 0.00 0.00 30.76 3.55
2630 2819 9.276590 TGTTTGCACTATCTTATCAGAATATGG 57.723 33.333 0.00 0.00 30.76 2.74
2633 2822 9.836864 ACATGTTTGCACTATCTTATCAGAATA 57.163 29.630 0.00 0.00 30.76 1.75
2634 2823 8.743085 ACATGTTTGCACTATCTTATCAGAAT 57.257 30.769 0.00 0.00 30.76 2.40
2635 2824 9.665719 TTACATGTTTGCACTATCTTATCAGAA 57.334 29.630 2.30 0.00 30.76 3.02
2636 2825 9.665719 TTTACATGTTTGCACTATCTTATCAGA 57.334 29.630 2.30 0.00 0.00 3.27
2641 2830 9.352784 GCATTTTTACATGTTTGCACTATCTTA 57.647 29.630 2.30 0.00 0.00 2.10
2642 2831 7.871973 TGCATTTTTACATGTTTGCACTATCTT 59.128 29.630 2.30 0.00 35.36 2.40
2643 2832 7.377398 TGCATTTTTACATGTTTGCACTATCT 58.623 30.769 2.30 0.00 35.36 1.98
2644 2833 7.579589 TGCATTTTTACATGTTTGCACTATC 57.420 32.000 2.30 0.00 35.36 2.08
2645 2834 7.959689 TTGCATTTTTACATGTTTGCACTAT 57.040 28.000 2.30 0.00 39.57 2.12
2646 2835 7.871973 AGATTGCATTTTTACATGTTTGCACTA 59.128 29.630 2.30 0.00 39.57 2.74
2647 2836 6.707161 AGATTGCATTTTTACATGTTTGCACT 59.293 30.769 2.30 6.79 39.57 4.40
2648 2837 6.890558 AGATTGCATTTTTACATGTTTGCAC 58.109 32.000 2.30 2.51 39.57 4.57
2649 2838 7.493743 AAGATTGCATTTTTACATGTTTGCA 57.506 28.000 2.30 9.57 38.24 4.08
2650 2839 9.316859 GTAAAGATTGCATTTTTACATGTTTGC 57.683 29.630 2.30 7.03 37.28 3.68
2681 2870 9.987272 CAGTGGATTGTGATAAGATATTGTCTA 57.013 33.333 0.00 0.00 35.67 2.59
2682 2871 8.708378 TCAGTGGATTGTGATAAGATATTGTCT 58.292 33.333 0.00 0.00 39.43 3.41
2683 2872 8.893219 TCAGTGGATTGTGATAAGATATTGTC 57.107 34.615 0.00 0.00 0.00 3.18
2684 2873 9.113838 GTTCAGTGGATTGTGATAAGATATTGT 57.886 33.333 0.00 0.00 0.00 2.71
2685 2874 8.562892 GGTTCAGTGGATTGTGATAAGATATTG 58.437 37.037 0.00 0.00 0.00 1.90
2686 2875 8.274322 TGGTTCAGTGGATTGTGATAAGATATT 58.726 33.333 0.00 0.00 0.00 1.28
2687 2876 7.805163 TGGTTCAGTGGATTGTGATAAGATAT 58.195 34.615 0.00 0.00 0.00 1.63
2688 2877 7.194112 TGGTTCAGTGGATTGTGATAAGATA 57.806 36.000 0.00 0.00 0.00 1.98
2689 2878 6.065976 TGGTTCAGTGGATTGTGATAAGAT 57.934 37.500 0.00 0.00 0.00 2.40
2690 2879 5.497464 TGGTTCAGTGGATTGTGATAAGA 57.503 39.130 0.00 0.00 0.00 2.10
2691 2880 6.118170 AGATGGTTCAGTGGATTGTGATAAG 58.882 40.000 0.00 0.00 0.00 1.73
2692 2881 6.065976 AGATGGTTCAGTGGATTGTGATAA 57.934 37.500 0.00 0.00 0.00 1.75
2693 2882 5.426509 AGAGATGGTTCAGTGGATTGTGATA 59.573 40.000 0.00 0.00 0.00 2.15
2694 2883 4.226846 AGAGATGGTTCAGTGGATTGTGAT 59.773 41.667 0.00 0.00 0.00 3.06
2695 2884 3.584406 AGAGATGGTTCAGTGGATTGTGA 59.416 43.478 0.00 0.00 0.00 3.58
2696 2885 3.937706 GAGAGATGGTTCAGTGGATTGTG 59.062 47.826 0.00 0.00 0.00 3.33
2697 2886 3.843027 AGAGAGATGGTTCAGTGGATTGT 59.157 43.478 0.00 0.00 0.00 2.71
2698 2887 4.081254 TGAGAGAGATGGTTCAGTGGATTG 60.081 45.833 0.00 0.00 0.00 2.67
2699 2888 4.081198 GTGAGAGAGATGGTTCAGTGGATT 60.081 45.833 0.00 0.00 0.00 3.01
2700 2889 3.450457 GTGAGAGAGATGGTTCAGTGGAT 59.550 47.826 0.00 0.00 0.00 3.41
2701 2890 2.828520 GTGAGAGAGATGGTTCAGTGGA 59.171 50.000 0.00 0.00 0.00 4.02
2702 2891 2.830923 AGTGAGAGAGATGGTTCAGTGG 59.169 50.000 0.00 0.00 0.00 4.00
2703 2892 3.368220 CCAGTGAGAGAGATGGTTCAGTG 60.368 52.174 0.00 2.08 39.53 3.66
2704 2893 2.830923 CCAGTGAGAGAGATGGTTCAGT 59.169 50.000 0.00 0.00 0.00 3.41
2705 2894 3.095332 TCCAGTGAGAGAGATGGTTCAG 58.905 50.000 0.00 0.00 34.32 3.02
2706 2895 2.828520 GTCCAGTGAGAGAGATGGTTCA 59.171 50.000 0.00 0.00 34.32 3.18
2707 2896 2.828520 TGTCCAGTGAGAGAGATGGTTC 59.171 50.000 0.00 0.00 34.32 3.62
2708 2897 2.830923 CTGTCCAGTGAGAGAGATGGTT 59.169 50.000 0.00 0.00 33.81 3.67
2709 2898 2.225242 ACTGTCCAGTGAGAGAGATGGT 60.225 50.000 11.16 0.00 40.75 3.55
2710 2899 2.426738 GACTGTCCAGTGAGAGAGATGG 59.573 54.545 4.35 0.00 42.66 3.51
2711 2900 3.087781 TGACTGTCCAGTGAGAGAGATG 58.912 50.000 4.35 0.00 42.66 2.90
2712 2901 3.448093 TGACTGTCCAGTGAGAGAGAT 57.552 47.619 4.35 0.00 42.66 2.75
2713 2902 2.959465 TGACTGTCCAGTGAGAGAGA 57.041 50.000 4.35 0.00 42.66 3.10
2714 2903 3.087781 TCATGACTGTCCAGTGAGAGAG 58.912 50.000 4.35 0.00 42.66 3.20
2715 2904 3.160679 TCATGACTGTCCAGTGAGAGA 57.839 47.619 4.35 0.00 42.66 3.10
2716 2905 3.949842 TTCATGACTGTCCAGTGAGAG 57.050 47.619 4.35 0.00 42.66 3.20
2717 2906 4.101585 AGTTTTCATGACTGTCCAGTGAGA 59.898 41.667 4.35 0.42 42.66 3.27
2718 2907 4.384056 AGTTTTCATGACTGTCCAGTGAG 58.616 43.478 4.35 0.00 42.66 3.51
2719 2908 4.422073 AGTTTTCATGACTGTCCAGTGA 57.578 40.909 4.35 0.00 42.66 3.41
2720 2909 6.618287 TTTAGTTTTCATGACTGTCCAGTG 57.382 37.500 4.35 2.28 42.66 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.