Multiple sequence alignment - TraesCS5B01G174800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G174800 chr5B 100.000 3731 0 0 1 3731 321206622 321202892 0.000000e+00 6890.0
1 TraesCS5B01G174800 chr5B 90.102 394 31 4 3341 3731 529523826 529524214 4.300000e-139 505.0
2 TraesCS5B01G174800 chr5B 86.301 292 31 8 451 735 626284465 626284754 3.620000e-80 309.0
3 TraesCS5B01G174800 chr5B 81.633 392 52 20 456 842 637899225 637899601 1.300000e-79 307.0
4 TraesCS5B01G174800 chr5B 83.673 343 23 4 1996 2310 529513759 529514096 3.640000e-75 292.0
5 TraesCS5B01G174800 chr1B 96.631 1514 44 3 1830 3342 181309036 181307529 0.000000e+00 2507.0
6 TraesCS5B01G174800 chr1B 92.756 1270 67 9 2090 3342 51946326 51947587 0.000000e+00 1812.0
7 TraesCS5B01G174800 chr1B 97.187 391 11 0 3341 3731 181307112 181306722 0.000000e+00 662.0
8 TraesCS5B01G174800 chr1B 80.411 924 111 33 1986 2862 26107898 26108798 1.130000e-179 640.0
9 TraesCS5B01G174800 chr1B 95.361 388 17 1 3344 3731 51947959 51948345 1.900000e-172 616.0
10 TraesCS5B01G174800 chrUn 98.187 1434 22 4 2300 3731 158059494 158060925 0.000000e+00 2501.0
11 TraesCS5B01G174800 chrUn 97.754 935 16 1 1375 2309 158044352 158045281 0.000000e+00 1605.0
12 TraesCS5B01G174800 chrUn 95.269 930 34 5 455 1379 158041469 158042393 0.000000e+00 1465.0
13 TraesCS5B01G174800 chrUn 88.863 422 40 3 489 905 23543891 23544310 2.570000e-141 512.0
14 TraesCS5B01G174800 chrUn 87.778 360 36 2 79 431 211232770 211233128 7.460000e-112 414.0
15 TraesCS5B01G174800 chr3B 98.187 1434 23 3 2300 3731 824999911 825001343 0.000000e+00 2501.0
16 TraesCS5B01G174800 chr3B 97.861 935 15 1 1375 2309 824984545 824985474 0.000000e+00 1611.0
17 TraesCS5B01G174800 chr3B 96.328 926 31 2 455 1379 824981663 824982586 0.000000e+00 1519.0
18 TraesCS5B01G174800 chr3B 85.301 830 67 24 945 1748 805645076 805644276 0.000000e+00 806.0
19 TraesCS5B01G174800 chr3B 81.084 830 99 36 1986 2774 654058432 654059244 8.860000e-171 610.0
20 TraesCS5B01G174800 chr3B 90.212 378 37 0 82 459 702476422 702476045 9.310000e-136 494.0
21 TraesCS5B01G174800 chr3B 89.125 377 40 1 82 458 632106009 632105634 5.640000e-128 468.0
22 TraesCS5B01G174800 chr3B 79.570 465 60 32 456 906 547562326 547561883 2.180000e-77 300.0
23 TraesCS5B01G174800 chr2D 90.839 1299 82 18 2015 3283 328330011 328328720 0.000000e+00 1705.0
24 TraesCS5B01G174800 chr2D 81.502 919 112 24 1986 2862 238093719 238094621 0.000000e+00 702.0
25 TraesCS5B01G174800 chr4A 95.725 959 33 5 2385 3342 111075995 111076946 0.000000e+00 1537.0
26 TraesCS5B01G174800 chr4A 96.173 392 14 1 3341 3731 111077363 111077754 1.130000e-179 640.0
27 TraesCS5B01G174800 chr5A 95.521 960 31 8 2385 3342 689263251 689264200 0.000000e+00 1524.0
28 TraesCS5B01G174800 chr5A 95.466 794 30 3 2550 3342 545711780 545712568 0.000000e+00 1262.0
29 TraesCS5B01G174800 chr5A 81.538 910 116 23 1986 2852 89279889 89280789 0.000000e+00 702.0
30 TraesCS5B01G174800 chr5A 96.173 392 13 2 3341 3731 689264616 689265006 1.130000e-179 640.0
31 TraesCS5B01G174800 chr5A 95.674 393 15 2 3341 3731 545712985 545713377 6.800000e-177 630.0
32 TraesCS5B01G174800 chr5A 88.535 314 26 10 459 766 412513149 412513458 4.550000e-99 372.0
33 TraesCS5B01G174800 chr2A 94.885 958 40 7 2385 3342 726990346 726991294 0.000000e+00 1489.0
34 TraesCS5B01G174800 chr2A 95.596 386 13 4 3349 3731 726991709 726992093 1.900000e-172 616.0
35 TraesCS5B01G174800 chr2A 82.403 466 61 16 1056 1511 372228305 372228759 1.630000e-103 387.0
36 TraesCS5B01G174800 chr3A 87.831 830 50 24 945 1748 728781361 728780557 0.000000e+00 926.0
37 TraesCS5B01G174800 chr3A 78.056 360 34 15 1413 1747 728780408 728780069 6.360000e-43 185.0
38 TraesCS5B01G174800 chr3A 91.045 67 5 1 1764 1830 9814094 9814029 5.130000e-14 89.8
39 TraesCS5B01G174800 chr3D 84.024 845 51 40 971 1748 598712301 598711474 0.000000e+00 736.0
40 TraesCS5B01G174800 chr3D 90.652 353 33 0 79 431 416713446 416713798 1.570000e-128 470.0
41 TraesCS5B01G174800 chr3D 79.091 110 18 2 1415 1524 598601671 598601567 1.860000e-08 71.3
42 TraesCS5B01G174800 chr2B 92.308 377 29 0 82 458 506759330 506758954 1.530000e-148 536.0
43 TraesCS5B01G174800 chr2B 90.526 380 34 2 79 458 506783220 506783597 5.560000e-138 501.0
44 TraesCS5B01G174800 chr2B 80.860 465 53 29 625 1068 130143789 130143340 2.150000e-87 333.0
45 TraesCS5B01G174800 chr2B 85.417 336 30 16 455 783 776840673 776840350 7.720000e-87 331.0
46 TraesCS5B01G174800 chr7B 90.691 376 34 1 82 457 465892924 465892550 2.000000e-137 499.0
47 TraesCS5B01G174800 chr7B 83.548 310 41 10 485 788 33398705 33398400 7.890000e-72 281.0
48 TraesCS5B01G174800 chr5D 93.373 332 22 0 100 431 162458374 162458043 3.350000e-135 492.0
49 TraesCS5B01G174800 chr4D 91.086 359 30 1 100 458 393761958 393761602 5.600000e-133 484.0
50 TraesCS5B01G174800 chr6B 93.720 207 4 4 869 1068 422694143 422694347 6.060000e-78 302.0
51 TraesCS5B01G174800 chr7A 83.436 326 38 14 456 774 2372066 2372382 4.710000e-74 289.0
52 TraesCS5B01G174800 chr7A 97.222 36 1 0 1838 1873 192611273 192611308 1.120000e-05 62.1
53 TraesCS5B01G174800 chr7D 95.082 122 5 1 1830 1951 47265153 47265033 1.370000e-44 191.0
54 TraesCS5B01G174800 chr1A 89.362 47 5 0 1841 1887 543715618 543715572 4.020000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G174800 chr5B 321202892 321206622 3730 True 6890.0 6890 100.0000 1 3731 1 chr5B.!!$R1 3730
1 TraesCS5B01G174800 chr1B 181306722 181309036 2314 True 1584.5 2507 96.9090 1830 3731 2 chr1B.!!$R1 1901
2 TraesCS5B01G174800 chr1B 51946326 51948345 2019 False 1214.0 1812 94.0585 2090 3731 2 chr1B.!!$F2 1641
3 TraesCS5B01G174800 chr1B 26107898 26108798 900 False 640.0 640 80.4110 1986 2862 1 chr1B.!!$F1 876
4 TraesCS5B01G174800 chrUn 158059494 158060925 1431 False 2501.0 2501 98.1870 2300 3731 1 chrUn.!!$F2 1431
5 TraesCS5B01G174800 chrUn 158041469 158045281 3812 False 1535.0 1605 96.5115 455 2309 2 chrUn.!!$F4 1854
6 TraesCS5B01G174800 chr3B 824999911 825001343 1432 False 2501.0 2501 98.1870 2300 3731 1 chr3B.!!$F2 1431
7 TraesCS5B01G174800 chr3B 824981663 824985474 3811 False 1565.0 1611 97.0945 455 2309 2 chr3B.!!$F3 1854
8 TraesCS5B01G174800 chr3B 805644276 805645076 800 True 806.0 806 85.3010 945 1748 1 chr3B.!!$R4 803
9 TraesCS5B01G174800 chr3B 654058432 654059244 812 False 610.0 610 81.0840 1986 2774 1 chr3B.!!$F1 788
10 TraesCS5B01G174800 chr2D 328328720 328330011 1291 True 1705.0 1705 90.8390 2015 3283 1 chr2D.!!$R1 1268
11 TraesCS5B01G174800 chr2D 238093719 238094621 902 False 702.0 702 81.5020 1986 2862 1 chr2D.!!$F1 876
12 TraesCS5B01G174800 chr4A 111075995 111077754 1759 False 1088.5 1537 95.9490 2385 3731 2 chr4A.!!$F1 1346
13 TraesCS5B01G174800 chr5A 689263251 689265006 1755 False 1082.0 1524 95.8470 2385 3731 2 chr5A.!!$F4 1346
14 TraesCS5B01G174800 chr5A 545711780 545713377 1597 False 946.0 1262 95.5700 2550 3731 2 chr5A.!!$F3 1181
15 TraesCS5B01G174800 chr5A 89279889 89280789 900 False 702.0 702 81.5380 1986 2852 1 chr5A.!!$F1 866
16 TraesCS5B01G174800 chr2A 726990346 726992093 1747 False 1052.5 1489 95.2405 2385 3731 2 chr2A.!!$F2 1346
17 TraesCS5B01G174800 chr3A 728780069 728781361 1292 True 555.5 926 82.9435 945 1748 2 chr3A.!!$R2 803
18 TraesCS5B01G174800 chr3D 598711474 598712301 827 True 736.0 736 84.0240 971 1748 1 chr3D.!!$R2 777

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
134 135 0.031721 ATCCGAATTCGTAGGGTCGC 59.968 55.0 25.10 0.0 37.74 5.19 F
354 355 0.035439 AACTGATGGCGGGTAAGGTG 60.035 55.0 0.00 0.0 0.00 4.00 F
403 404 0.099968 TATCTCGAAACTGCGTCGGG 59.900 55.0 0.00 0.0 40.44 5.14 F
447 448 0.108186 TCTAGATGTGTGGCCGCTTG 60.108 55.0 18.96 0.0 0.00 4.01 F
1844 3885 0.322008 CCAAGGCAAGGTGTCTCTCC 60.322 60.0 0.00 0.0 26.08 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1819 3860 0.482446 ACACCTTGCCTTGGGATGAA 59.518 50.000 0.00 0.00 0.00 2.57 R
1844 3885 0.533032 GGAGAAGAACGGGTGAGAGG 59.467 60.000 0.00 0.00 0.00 3.69 R
2086 4149 2.742589 TGTCACAACACGCACAAAGTAA 59.257 40.909 0.00 0.00 0.00 2.24 R
2223 4306 5.801531 TCTACTAAGCAACTTTGTGGAGA 57.198 39.130 4.42 0.00 33.73 3.71 R
2965 5091 0.966875 CTGCCTTGCCATGGTGCTAA 60.967 55.000 14.67 3.35 0.00 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.452733 CCCCGCTCGAGGAACCAC 62.453 72.222 15.58 0.00 0.00 4.16
38 39 3.691342 CCCGCTCGAGGAACCACA 61.691 66.667 15.58 0.00 0.00 4.17
39 40 2.432628 CCGCTCGAGGAACCACAC 60.433 66.667 15.58 0.00 0.00 3.82
40 41 2.338620 CGCTCGAGGAACCACACA 59.661 61.111 15.58 0.00 0.00 3.72
41 42 2.022129 CGCTCGAGGAACCACACAC 61.022 63.158 15.58 0.00 0.00 3.82
42 43 1.668151 GCTCGAGGAACCACACACC 60.668 63.158 15.58 0.00 0.00 4.16
43 44 2.050269 CTCGAGGAACCACACACCT 58.950 57.895 3.91 0.00 36.68 4.00
44 45 0.038159 CTCGAGGAACCACACACCTC 60.038 60.000 3.91 0.00 44.50 3.85
48 49 3.914426 GAGGAACCACACACCTCATAT 57.086 47.619 0.00 0.00 46.42 1.78
49 50 4.222124 GAGGAACCACACACCTCATATT 57.778 45.455 0.00 0.00 46.42 1.28
50 51 4.192317 GAGGAACCACACACCTCATATTC 58.808 47.826 0.00 0.00 46.42 1.75
51 52 3.587061 AGGAACCACACACCTCATATTCA 59.413 43.478 0.00 0.00 0.00 2.57
52 53 4.042809 AGGAACCACACACCTCATATTCAA 59.957 41.667 0.00 0.00 0.00 2.69
53 54 4.764823 GGAACCACACACCTCATATTCAAA 59.235 41.667 0.00 0.00 0.00 2.69
54 55 5.242838 GGAACCACACACCTCATATTCAAAA 59.757 40.000 0.00 0.00 0.00 2.44
55 56 5.705609 ACCACACACCTCATATTCAAAAC 57.294 39.130 0.00 0.00 0.00 2.43
56 57 4.522789 ACCACACACCTCATATTCAAAACC 59.477 41.667 0.00 0.00 0.00 3.27
57 58 4.766891 CCACACACCTCATATTCAAAACCT 59.233 41.667 0.00 0.00 0.00 3.50
58 59 5.106157 CCACACACCTCATATTCAAAACCTC 60.106 44.000 0.00 0.00 0.00 3.85
59 60 5.473162 CACACACCTCATATTCAAAACCTCA 59.527 40.000 0.00 0.00 0.00 3.86
60 61 6.151648 CACACACCTCATATTCAAAACCTCAT 59.848 38.462 0.00 0.00 0.00 2.90
61 62 6.721208 ACACACCTCATATTCAAAACCTCATT 59.279 34.615 0.00 0.00 0.00 2.57
62 63 7.233348 ACACACCTCATATTCAAAACCTCATTT 59.767 33.333 0.00 0.00 0.00 2.32
63 64 8.090214 CACACCTCATATTCAAAACCTCATTTT 58.910 33.333 0.00 0.00 41.38 1.82
64 65 8.650490 ACACCTCATATTCAAAACCTCATTTTT 58.350 29.630 0.00 0.00 38.50 1.94
92 93 1.726791 CACATAGACGTGTCACAAGGC 59.273 52.381 3.42 0.00 32.00 4.35
93 94 1.343142 ACATAGACGTGTCACAAGGCA 59.657 47.619 0.00 0.00 0.00 4.75
94 95 2.028112 ACATAGACGTGTCACAAGGCAT 60.028 45.455 0.00 0.00 0.00 4.40
95 96 2.363788 TAGACGTGTCACAAGGCATC 57.636 50.000 0.00 0.00 0.00 3.91
96 97 0.667487 AGACGTGTCACAAGGCATCG 60.667 55.000 0.00 0.00 0.00 3.84
97 98 0.944311 GACGTGTCACAAGGCATCGT 60.944 55.000 3.42 0.00 0.00 3.73
98 99 0.531974 ACGTGTCACAAGGCATCGTT 60.532 50.000 3.42 0.00 0.00 3.85
99 100 0.110688 CGTGTCACAAGGCATCGTTG 60.111 55.000 3.42 0.00 35.67 4.10
100 101 0.944386 GTGTCACAAGGCATCGTTGT 59.056 50.000 0.00 0.00 42.05 3.32
116 117 3.963383 GTTGTGACGAGGTGACAAAAT 57.037 42.857 2.47 0.00 40.78 1.82
117 118 3.873529 GTTGTGACGAGGTGACAAAATC 58.126 45.455 2.47 0.00 40.78 2.17
118 119 2.489971 TGTGACGAGGTGACAAAATCC 58.510 47.619 0.00 0.00 0.00 3.01
119 120 1.459592 GTGACGAGGTGACAAAATCCG 59.540 52.381 0.00 0.00 0.00 4.18
120 121 1.341852 TGACGAGGTGACAAAATCCGA 59.658 47.619 0.00 0.00 0.00 4.55
121 122 2.224090 TGACGAGGTGACAAAATCCGAA 60.224 45.455 0.00 0.00 0.00 4.30
122 123 3.000727 GACGAGGTGACAAAATCCGAAT 58.999 45.455 0.00 0.00 0.00 3.34
123 124 3.408634 ACGAGGTGACAAAATCCGAATT 58.591 40.909 0.00 0.00 0.00 2.17
124 125 3.435671 ACGAGGTGACAAAATCCGAATTC 59.564 43.478 0.00 0.00 0.00 2.17
125 126 3.483574 CGAGGTGACAAAATCCGAATTCG 60.484 47.826 20.92 20.92 39.44 3.34
126 127 3.408634 AGGTGACAAAATCCGAATTCGT 58.591 40.909 25.10 6.12 37.74 3.85
127 128 4.571919 AGGTGACAAAATCCGAATTCGTA 58.428 39.130 25.10 11.62 37.74 3.43
128 129 4.630069 AGGTGACAAAATCCGAATTCGTAG 59.370 41.667 25.10 11.97 37.74 3.51
129 130 4.201783 GGTGACAAAATCCGAATTCGTAGG 60.202 45.833 25.10 11.26 37.74 3.18
130 131 3.936453 TGACAAAATCCGAATTCGTAGGG 59.064 43.478 25.10 10.90 37.74 3.53
131 132 3.937079 GACAAAATCCGAATTCGTAGGGT 59.063 43.478 25.10 15.05 37.74 4.34
132 133 3.937079 ACAAAATCCGAATTCGTAGGGTC 59.063 43.478 25.10 0.00 37.74 4.46
133 134 2.503920 AATCCGAATTCGTAGGGTCG 57.496 50.000 25.10 9.14 37.74 4.79
134 135 0.031721 ATCCGAATTCGTAGGGTCGC 59.968 55.000 25.10 0.00 37.74 5.19
135 136 1.590792 CCGAATTCGTAGGGTCGCC 60.591 63.158 25.10 0.00 37.74 5.54
136 137 1.590792 CGAATTCGTAGGGTCGCCC 60.591 63.158 19.67 6.80 38.11 6.13
157 158 3.741805 GGGTTACGAAAAGATGAGTGC 57.258 47.619 0.00 0.00 0.00 4.40
158 159 2.093783 GGGTTACGAAAAGATGAGTGCG 59.906 50.000 0.00 0.00 0.00 5.34
159 160 2.093783 GGTTACGAAAAGATGAGTGCGG 59.906 50.000 0.00 0.00 0.00 5.69
160 161 2.004583 TACGAAAAGATGAGTGCGGG 57.995 50.000 0.00 0.00 0.00 6.13
161 162 0.320374 ACGAAAAGATGAGTGCGGGA 59.680 50.000 0.00 0.00 0.00 5.14
162 163 1.270625 ACGAAAAGATGAGTGCGGGAA 60.271 47.619 0.00 0.00 0.00 3.97
163 164 1.804151 CGAAAAGATGAGTGCGGGAAA 59.196 47.619 0.00 0.00 0.00 3.13
164 165 2.225491 CGAAAAGATGAGTGCGGGAAAA 59.775 45.455 0.00 0.00 0.00 2.29
165 166 3.565516 GAAAAGATGAGTGCGGGAAAAC 58.434 45.455 0.00 0.00 0.00 2.43
166 167 1.156736 AAGATGAGTGCGGGAAAACG 58.843 50.000 0.00 0.00 0.00 3.60
167 168 0.320374 AGATGAGTGCGGGAAAACGA 59.680 50.000 0.00 0.00 35.47 3.85
168 169 0.442699 GATGAGTGCGGGAAAACGAC 59.557 55.000 0.00 0.00 35.47 4.34
169 170 1.289109 ATGAGTGCGGGAAAACGACG 61.289 55.000 0.00 0.00 35.47 5.12
170 171 2.663852 AGTGCGGGAAAACGACGG 60.664 61.111 0.00 0.00 35.47 4.79
171 172 4.379143 GTGCGGGAAAACGACGGC 62.379 66.667 0.00 0.00 35.47 5.68
172 173 4.912485 TGCGGGAAAACGACGGCA 62.912 61.111 0.00 0.00 40.02 5.69
173 174 3.428282 GCGGGAAAACGACGGCAT 61.428 61.111 0.00 0.00 35.47 4.40
174 175 2.101835 GCGGGAAAACGACGGCATA 61.102 57.895 0.00 0.00 35.47 3.14
175 176 1.433837 GCGGGAAAACGACGGCATAT 61.434 55.000 0.00 0.00 35.47 1.78
176 177 0.580104 CGGGAAAACGACGGCATATC 59.420 55.000 0.00 0.00 35.47 1.63
177 178 0.580104 GGGAAAACGACGGCATATCG 59.420 55.000 0.00 2.35 45.17 2.92
178 179 0.580104 GGAAAACGACGGCATATCGG 59.420 55.000 0.00 0.00 43.95 4.18
179 180 1.563111 GAAAACGACGGCATATCGGA 58.437 50.000 0.00 0.00 43.95 4.55
180 181 2.132762 GAAAACGACGGCATATCGGAT 58.867 47.619 0.00 0.00 43.95 4.18
181 182 1.779569 AAACGACGGCATATCGGATC 58.220 50.000 0.00 0.00 43.95 3.36
182 183 0.386858 AACGACGGCATATCGGATCG 60.387 55.000 0.00 0.00 43.95 3.69
183 184 2.152699 CGACGGCATATCGGATCGC 61.153 63.158 0.00 0.00 35.92 4.58
184 185 1.805945 GACGGCATATCGGATCGCC 60.806 63.158 17.29 17.29 41.30 5.54
185 186 2.509336 CGGCATATCGGATCGCCC 60.509 66.667 19.95 7.81 41.71 6.13
186 187 2.982130 GGCATATCGGATCGCCCT 59.018 61.111 16.70 0.00 38.67 5.19
187 188 1.663379 CGGCATATCGGATCGCCCTA 61.663 60.000 19.95 0.00 41.71 3.53
188 189 0.535335 GGCATATCGGATCGCCCTAA 59.465 55.000 16.70 0.00 38.67 2.69
189 190 1.471676 GGCATATCGGATCGCCCTAAG 60.472 57.143 16.70 0.00 38.67 2.18
190 191 1.476891 GCATATCGGATCGCCCTAAGA 59.523 52.381 0.00 0.00 0.00 2.10
191 192 2.735762 GCATATCGGATCGCCCTAAGAC 60.736 54.545 0.00 0.00 0.00 3.01
192 193 1.162698 TATCGGATCGCCCTAAGACG 58.837 55.000 0.00 0.00 0.00 4.18
193 194 0.536687 ATCGGATCGCCCTAAGACGA 60.537 55.000 0.00 0.00 43.33 4.20
194 195 1.008767 CGGATCGCCCTAAGACGAC 60.009 63.158 0.00 0.00 41.76 4.34
195 196 1.008767 GGATCGCCCTAAGACGACG 60.009 63.158 0.00 0.00 41.76 5.12
196 197 1.008767 GATCGCCCTAAGACGACGG 60.009 63.158 0.00 0.00 41.76 4.79
197 198 3.135056 ATCGCCCTAAGACGACGGC 62.135 63.158 0.00 0.00 41.76 5.68
198 199 4.867599 CGCCCTAAGACGACGGCC 62.868 72.222 0.00 0.00 38.19 6.13
199 200 3.459063 GCCCTAAGACGACGGCCT 61.459 66.667 0.00 0.00 35.23 5.19
200 201 2.806237 CCCTAAGACGACGGCCTC 59.194 66.667 0.00 0.00 0.00 4.70
201 202 2.050350 CCCTAAGACGACGGCCTCA 61.050 63.158 0.00 0.00 0.00 3.86
202 203 1.601419 CCCTAAGACGACGGCCTCAA 61.601 60.000 0.00 0.00 0.00 3.02
203 204 0.179134 CCTAAGACGACGGCCTCAAG 60.179 60.000 0.00 0.00 0.00 3.02
204 205 0.179134 CTAAGACGACGGCCTCAAGG 60.179 60.000 0.00 0.00 38.53 3.61
205 206 0.896940 TAAGACGACGGCCTCAAGGT 60.897 55.000 0.00 0.00 37.57 3.50
206 207 0.896940 AAGACGACGGCCTCAAGGTA 60.897 55.000 0.00 0.00 37.57 3.08
207 208 1.139095 GACGACGGCCTCAAGGTAG 59.861 63.158 0.00 0.00 37.57 3.18
208 209 1.303888 ACGACGGCCTCAAGGTAGA 60.304 57.895 0.00 0.00 37.57 2.59
209 210 1.139095 CGACGGCCTCAAGGTAGAC 59.861 63.158 0.00 0.00 37.57 2.59
210 211 1.516423 GACGGCCTCAAGGTAGACC 59.484 63.158 0.00 0.00 37.57 3.85
211 212 1.229082 ACGGCCTCAAGGTAGACCA 60.229 57.895 0.00 0.00 38.89 4.02
212 213 1.258445 ACGGCCTCAAGGTAGACCAG 61.258 60.000 0.00 0.00 38.89 4.00
213 214 0.970937 CGGCCTCAAGGTAGACCAGA 60.971 60.000 0.00 0.00 38.89 3.86
214 215 0.537653 GGCCTCAAGGTAGACCAGAC 59.462 60.000 0.00 0.00 38.89 3.51
215 216 0.537653 GCCTCAAGGTAGACCAGACC 59.462 60.000 0.66 0.00 38.89 3.85
216 217 0.818296 CCTCAAGGTAGACCAGACCG 59.182 60.000 0.66 0.00 42.21 4.79
217 218 0.173708 CTCAAGGTAGACCAGACCGC 59.826 60.000 0.66 0.00 42.21 5.68
218 219 0.541063 TCAAGGTAGACCAGACCGCA 60.541 55.000 0.66 0.00 42.21 5.69
219 220 0.320374 CAAGGTAGACCAGACCGCAA 59.680 55.000 0.66 0.00 42.21 4.85
220 221 1.053424 AAGGTAGACCAGACCGCAAA 58.947 50.000 0.66 0.00 42.21 3.68
221 222 1.053424 AGGTAGACCAGACCGCAAAA 58.947 50.000 0.66 0.00 42.21 2.44
222 223 1.154197 GGTAGACCAGACCGCAAAAC 58.846 55.000 0.00 0.00 35.64 2.43
223 224 1.154197 GTAGACCAGACCGCAAAACC 58.846 55.000 0.00 0.00 0.00 3.27
224 225 1.053424 TAGACCAGACCGCAAAACCT 58.947 50.000 0.00 0.00 0.00 3.50
225 226 0.535102 AGACCAGACCGCAAAACCTG 60.535 55.000 0.00 0.00 0.00 4.00
237 238 3.684103 CAAAACCTGCAGTACGAACAA 57.316 42.857 13.81 0.00 0.00 2.83
238 239 4.223320 CAAAACCTGCAGTACGAACAAT 57.777 40.909 13.81 0.00 0.00 2.71
239 240 4.219033 CAAAACCTGCAGTACGAACAATC 58.781 43.478 13.81 0.00 0.00 2.67
240 241 2.831685 ACCTGCAGTACGAACAATCA 57.168 45.000 13.81 0.00 0.00 2.57
241 242 3.334583 ACCTGCAGTACGAACAATCAT 57.665 42.857 13.81 0.00 0.00 2.45
242 243 3.262420 ACCTGCAGTACGAACAATCATC 58.738 45.455 13.81 0.00 0.00 2.92
243 244 2.282555 CCTGCAGTACGAACAATCATCG 59.717 50.000 13.81 0.00 45.47 3.84
244 245 3.179048 CTGCAGTACGAACAATCATCGA 58.821 45.455 5.25 0.00 42.76 3.59
245 246 2.921121 TGCAGTACGAACAATCATCGAC 59.079 45.455 2.65 0.00 42.76 4.20
246 247 2.035674 GCAGTACGAACAATCATCGACG 60.036 50.000 2.65 0.00 42.76 5.12
247 248 3.422655 CAGTACGAACAATCATCGACGA 58.577 45.455 0.00 0.00 42.76 4.20
248 249 3.478874 CAGTACGAACAATCATCGACGAG 59.521 47.826 3.01 0.00 42.76 4.18
249 250 2.631418 ACGAACAATCATCGACGAGT 57.369 45.000 3.01 0.00 42.76 4.18
250 251 3.752412 ACGAACAATCATCGACGAGTA 57.248 42.857 3.01 0.00 42.76 2.59
251 252 3.681855 ACGAACAATCATCGACGAGTAG 58.318 45.455 3.01 0.00 42.76 2.57
252 253 3.373130 ACGAACAATCATCGACGAGTAGA 59.627 43.478 3.01 1.71 42.76 2.59
253 254 4.142752 ACGAACAATCATCGACGAGTAGAA 60.143 41.667 3.01 0.00 42.76 2.10
254 255 4.791676 CGAACAATCATCGACGAGTAGAAA 59.208 41.667 3.01 0.00 42.76 2.52
255 256 5.285370 CGAACAATCATCGACGAGTAGAAAA 59.715 40.000 3.01 0.00 42.76 2.29
256 257 6.020599 CGAACAATCATCGACGAGTAGAAAAT 60.021 38.462 3.01 0.00 42.76 1.82
257 258 7.165318 CGAACAATCATCGACGAGTAGAAAATA 59.835 37.037 3.01 0.00 42.76 1.40
258 259 7.681125 ACAATCATCGACGAGTAGAAAATAC 57.319 36.000 3.01 0.00 0.00 1.89
259 260 7.481642 ACAATCATCGACGAGTAGAAAATACT 58.518 34.615 3.01 0.00 0.00 2.12
260 261 7.644551 ACAATCATCGACGAGTAGAAAATACTC 59.355 37.037 3.01 5.19 40.26 2.59
261 262 6.922247 TCATCGACGAGTAGAAAATACTCT 57.078 37.500 3.01 1.57 41.19 3.24
262 263 7.317842 TCATCGACGAGTAGAAAATACTCTT 57.682 36.000 3.01 4.06 41.19 2.85
263 264 7.759465 TCATCGACGAGTAGAAAATACTCTTT 58.241 34.615 3.01 1.01 41.19 2.52
264 265 7.696872 TCATCGACGAGTAGAAAATACTCTTTG 59.303 37.037 3.01 7.63 41.19 2.77
265 266 7.137490 TCGACGAGTAGAAAATACTCTTTGA 57.863 36.000 11.96 9.46 41.19 2.69
266 267 7.587629 TCGACGAGTAGAAAATACTCTTTGAA 58.412 34.615 11.96 0.00 41.19 2.69
267 268 8.077991 TCGACGAGTAGAAAATACTCTTTGAAA 58.922 33.333 11.96 0.00 41.19 2.69
268 269 8.861101 CGACGAGTAGAAAATACTCTTTGAAAT 58.139 33.333 11.96 0.00 41.19 2.17
301 302 8.970691 ATTTGCACAATGTGAATAACTAGAAC 57.029 30.769 18.66 0.00 35.23 3.01
302 303 7.503521 TTGCACAATGTGAATAACTAGAACA 57.496 32.000 18.66 0.00 35.23 3.18
303 304 7.503521 TGCACAATGTGAATAACTAGAACAA 57.496 32.000 18.66 0.00 35.23 2.83
304 305 8.109705 TGCACAATGTGAATAACTAGAACAAT 57.890 30.769 18.66 0.00 35.23 2.71
305 306 8.575589 TGCACAATGTGAATAACTAGAACAATT 58.424 29.630 18.66 0.00 35.23 2.32
306 307 8.853345 GCACAATGTGAATAACTAGAACAATTG 58.147 33.333 18.66 3.24 35.23 2.32
307 308 8.853345 CACAATGTGAATAACTAGAACAATTGC 58.147 33.333 7.78 0.00 35.23 3.56
308 309 8.575589 ACAATGTGAATAACTAGAACAATTGCA 58.424 29.630 5.05 0.00 0.00 4.08
309 310 8.853345 CAATGTGAATAACTAGAACAATTGCAC 58.147 33.333 5.05 1.66 0.00 4.57
310 311 6.908825 TGTGAATAACTAGAACAATTGCACC 58.091 36.000 5.05 0.00 0.00 5.01
311 312 6.714810 TGTGAATAACTAGAACAATTGCACCT 59.285 34.615 5.05 2.82 0.00 4.00
312 313 7.023575 GTGAATAACTAGAACAATTGCACCTG 58.976 38.462 5.05 0.00 0.00 4.00
313 314 6.150976 TGAATAACTAGAACAATTGCACCTGG 59.849 38.462 5.05 4.90 0.00 4.45
314 315 3.508845 ACTAGAACAATTGCACCTGGT 57.491 42.857 5.05 5.53 0.00 4.00
315 316 3.149196 ACTAGAACAATTGCACCTGGTG 58.851 45.455 22.46 22.46 36.51 4.17
316 317 2.363306 AGAACAATTGCACCTGGTGA 57.637 45.000 30.23 10.96 35.23 4.02
317 318 2.880443 AGAACAATTGCACCTGGTGAT 58.120 42.857 30.23 12.91 35.23 3.06
318 319 3.233507 AGAACAATTGCACCTGGTGATT 58.766 40.909 30.23 18.02 35.23 2.57
319 320 3.642848 AGAACAATTGCACCTGGTGATTT 59.357 39.130 30.23 15.78 35.23 2.17
320 321 4.832266 AGAACAATTGCACCTGGTGATTTA 59.168 37.500 30.23 11.48 35.23 1.40
321 322 5.481473 AGAACAATTGCACCTGGTGATTTAT 59.519 36.000 30.23 13.17 35.23 1.40
322 323 5.329035 ACAATTGCACCTGGTGATTTATC 57.671 39.130 30.23 11.64 35.23 1.75
323 324 4.160252 ACAATTGCACCTGGTGATTTATCC 59.840 41.667 30.23 10.91 35.23 2.59
324 325 2.036958 TGCACCTGGTGATTTATCCG 57.963 50.000 30.23 0.51 35.23 4.18
325 326 1.557371 TGCACCTGGTGATTTATCCGA 59.443 47.619 30.23 0.00 35.23 4.55
326 327 1.940613 GCACCTGGTGATTTATCCGAC 59.059 52.381 30.23 4.55 35.23 4.79
327 328 2.679639 GCACCTGGTGATTTATCCGACA 60.680 50.000 30.23 0.00 35.23 4.35
328 329 3.605634 CACCTGGTGATTTATCCGACAA 58.394 45.455 22.33 0.00 35.23 3.18
329 330 4.199310 CACCTGGTGATTTATCCGACAAT 58.801 43.478 22.33 0.00 35.23 2.71
330 331 4.035558 CACCTGGTGATTTATCCGACAATG 59.964 45.833 22.33 0.00 35.23 2.82
331 332 4.199310 CCTGGTGATTTATCCGACAATGT 58.801 43.478 0.00 0.00 0.00 2.71
332 333 4.273480 CCTGGTGATTTATCCGACAATGTC 59.727 45.833 2.75 2.75 0.00 3.06
333 334 4.196193 TGGTGATTTATCCGACAATGTCC 58.804 43.478 7.91 0.00 0.00 4.02
334 335 4.196193 GGTGATTTATCCGACAATGTCCA 58.804 43.478 7.91 0.00 0.00 4.02
335 336 4.638421 GGTGATTTATCCGACAATGTCCAA 59.362 41.667 7.91 0.00 0.00 3.53
336 337 5.124776 GGTGATTTATCCGACAATGTCCAAA 59.875 40.000 7.91 4.06 0.00 3.28
337 338 6.027749 GTGATTTATCCGACAATGTCCAAAC 58.972 40.000 7.91 0.94 0.00 2.93
338 339 5.943416 TGATTTATCCGACAATGTCCAAACT 59.057 36.000 7.91 0.00 0.00 2.66
339 340 5.621197 TTTATCCGACAATGTCCAAACTG 57.379 39.130 7.91 0.00 0.00 3.16
340 341 2.920724 TCCGACAATGTCCAAACTGA 57.079 45.000 7.91 0.00 0.00 3.41
341 342 3.417069 TCCGACAATGTCCAAACTGAT 57.583 42.857 7.91 0.00 0.00 2.90
342 343 3.073678 TCCGACAATGTCCAAACTGATG 58.926 45.455 7.91 0.00 0.00 3.07
343 344 2.162208 CCGACAATGTCCAAACTGATGG 59.838 50.000 7.91 0.00 42.12 3.51
344 345 2.414559 CGACAATGTCCAAACTGATGGC 60.415 50.000 7.91 0.00 40.46 4.40
345 346 1.541147 ACAATGTCCAAACTGATGGCG 59.459 47.619 0.00 0.00 40.46 5.69
346 347 1.135315 CAATGTCCAAACTGATGGCGG 60.135 52.381 0.00 0.00 40.46 6.13
347 348 0.680921 ATGTCCAAACTGATGGCGGG 60.681 55.000 0.00 0.00 40.46 6.13
348 349 1.303317 GTCCAAACTGATGGCGGGT 60.303 57.895 0.00 0.00 40.46 5.28
349 350 0.035820 GTCCAAACTGATGGCGGGTA 60.036 55.000 0.00 0.00 40.46 3.69
350 351 0.693622 TCCAAACTGATGGCGGGTAA 59.306 50.000 0.00 0.00 40.46 2.85
351 352 1.094785 CCAAACTGATGGCGGGTAAG 58.905 55.000 0.00 0.00 32.78 2.34
352 353 1.094785 CAAACTGATGGCGGGTAAGG 58.905 55.000 0.00 0.00 0.00 2.69
353 354 0.696501 AAACTGATGGCGGGTAAGGT 59.303 50.000 0.00 0.00 0.00 3.50
354 355 0.035439 AACTGATGGCGGGTAAGGTG 60.035 55.000 0.00 0.00 0.00 4.00
355 356 0.907704 ACTGATGGCGGGTAAGGTGA 60.908 55.000 0.00 0.00 0.00 4.02
356 357 0.469917 CTGATGGCGGGTAAGGTGAT 59.530 55.000 0.00 0.00 0.00 3.06
357 358 0.916086 TGATGGCGGGTAAGGTGATT 59.084 50.000 0.00 0.00 0.00 2.57
358 359 2.104111 CTGATGGCGGGTAAGGTGATTA 59.896 50.000 0.00 0.00 0.00 1.75
359 360 2.708861 TGATGGCGGGTAAGGTGATTAT 59.291 45.455 0.00 0.00 0.00 1.28
360 361 2.631160 TGGCGGGTAAGGTGATTATG 57.369 50.000 0.00 0.00 0.00 1.90
361 362 1.142060 TGGCGGGTAAGGTGATTATGG 59.858 52.381 0.00 0.00 0.00 2.74
362 363 1.418637 GGCGGGTAAGGTGATTATGGA 59.581 52.381 0.00 0.00 0.00 3.41
363 364 2.490991 GCGGGTAAGGTGATTATGGAC 58.509 52.381 0.00 0.00 0.00 4.02
364 365 2.158871 GCGGGTAAGGTGATTATGGACA 60.159 50.000 0.00 0.00 0.00 4.02
365 366 3.463944 CGGGTAAGGTGATTATGGACAC 58.536 50.000 0.00 0.00 36.44 3.67
366 367 3.463944 GGGTAAGGTGATTATGGACACG 58.536 50.000 0.00 0.00 37.82 4.49
367 368 3.463944 GGTAAGGTGATTATGGACACGG 58.536 50.000 0.00 0.00 37.82 4.94
368 369 2.710096 AAGGTGATTATGGACACGGG 57.290 50.000 0.00 0.00 37.82 5.28
369 370 1.874129 AGGTGATTATGGACACGGGA 58.126 50.000 0.00 0.00 37.82 5.14
370 371 2.408565 AGGTGATTATGGACACGGGAT 58.591 47.619 0.00 0.00 37.82 3.85
371 372 2.104792 AGGTGATTATGGACACGGGATG 59.895 50.000 0.00 0.00 37.82 3.51
379 380 4.480480 ACACGGGATGTCCTGGAT 57.520 55.556 12.32 0.00 46.75 3.41
380 381 1.907739 ACACGGGATGTCCTGGATG 59.092 57.895 12.32 5.11 46.75 3.51
381 382 1.146930 CACGGGATGTCCTGGATGG 59.853 63.158 12.32 0.00 46.75 3.51
382 383 1.002921 ACGGGATGTCCTGGATGGA 59.997 57.895 12.32 0.00 46.75 3.41
392 393 3.595190 TCCTGGATGGAGTATCTCGAA 57.405 47.619 0.00 0.00 40.56 3.71
393 394 3.910989 TCCTGGATGGAGTATCTCGAAA 58.089 45.455 0.00 0.00 40.56 3.46
394 395 3.637229 TCCTGGATGGAGTATCTCGAAAC 59.363 47.826 0.00 0.00 40.56 2.78
395 396 3.639094 CCTGGATGGAGTATCTCGAAACT 59.361 47.826 0.00 0.00 38.35 2.66
396 397 4.500545 CCTGGATGGAGTATCTCGAAACTG 60.501 50.000 0.00 0.00 38.35 3.16
397 398 3.181475 TGGATGGAGTATCTCGAAACTGC 60.181 47.826 6.75 6.75 36.03 4.40
398 399 2.561733 TGGAGTATCTCGAAACTGCG 57.438 50.000 8.51 0.00 36.91 5.18
399 400 1.816835 TGGAGTATCTCGAAACTGCGT 59.183 47.619 8.51 0.00 36.91 5.24
400 401 2.159421 TGGAGTATCTCGAAACTGCGTC 60.159 50.000 8.51 0.00 36.91 5.19
401 402 2.102633 GAGTATCTCGAAACTGCGTCG 58.897 52.381 0.00 0.00 39.88 5.12
402 403 1.189403 GTATCTCGAAACTGCGTCGG 58.811 55.000 0.00 0.00 39.01 4.79
403 404 0.099968 TATCTCGAAACTGCGTCGGG 59.900 55.000 0.00 0.00 40.44 5.14
404 405 1.874345 ATCTCGAAACTGCGTCGGGT 61.874 55.000 0.00 0.00 40.00 5.28
405 406 2.049802 TCGAAACTGCGTCGGGTC 60.050 61.111 0.00 0.00 39.01 4.46
406 407 3.467119 CGAAACTGCGTCGGGTCG 61.467 66.667 0.00 0.00 34.85 4.79
407 408 2.049802 GAAACTGCGTCGGGTCGA 60.050 61.111 0.00 0.00 0.00 4.20
417 418 2.718094 TCGGGTCGACAAGTGTACA 58.282 52.632 18.91 0.00 0.00 2.90
418 419 1.031235 TCGGGTCGACAAGTGTACAA 58.969 50.000 18.91 0.00 0.00 2.41
419 420 1.134226 CGGGTCGACAAGTGTACAAC 58.866 55.000 18.91 0.00 0.00 3.32
420 421 1.536496 CGGGTCGACAAGTGTACAACA 60.536 52.381 18.91 0.00 0.00 3.33
428 429 4.272100 GTGTACAACACGGCCGAT 57.728 55.556 35.90 17.41 39.53 4.18
429 430 2.075761 GTGTACAACACGGCCGATC 58.924 57.895 35.90 13.29 39.53 3.69
430 431 0.389426 GTGTACAACACGGCCGATCT 60.389 55.000 35.90 12.39 39.53 2.75
431 432 1.135315 GTGTACAACACGGCCGATCTA 60.135 52.381 35.90 10.34 39.53 1.98
432 433 1.133598 TGTACAACACGGCCGATCTAG 59.866 52.381 35.90 19.11 0.00 2.43
433 434 1.402968 GTACAACACGGCCGATCTAGA 59.597 52.381 35.90 9.98 0.00 2.43
434 435 1.112113 ACAACACGGCCGATCTAGAT 58.888 50.000 35.90 4.47 0.00 1.98
435 436 1.202417 ACAACACGGCCGATCTAGATG 60.202 52.381 35.90 20.43 0.00 2.90
436 437 1.112113 AACACGGCCGATCTAGATGT 58.888 50.000 35.90 21.19 0.00 3.06
437 438 0.385751 ACACGGCCGATCTAGATGTG 59.614 55.000 35.90 18.80 0.00 3.21
438 439 0.385751 CACGGCCGATCTAGATGTGT 59.614 55.000 35.90 0.00 0.00 3.72
439 440 0.385751 ACGGCCGATCTAGATGTGTG 59.614 55.000 35.90 0.00 0.00 3.82
440 441 0.319040 CGGCCGATCTAGATGTGTGG 60.319 60.000 24.07 7.66 0.00 4.17
441 442 0.601311 GGCCGATCTAGATGTGTGGC 60.601 60.000 10.74 16.41 40.25 5.01
442 443 0.601311 GCCGATCTAGATGTGTGGCC 60.601 60.000 10.74 0.00 35.01 5.36
443 444 0.319040 CCGATCTAGATGTGTGGCCG 60.319 60.000 10.74 5.38 0.00 6.13
444 445 0.941463 CGATCTAGATGTGTGGCCGC 60.941 60.000 10.74 10.11 0.00 6.53
445 446 0.390860 GATCTAGATGTGTGGCCGCT 59.609 55.000 18.96 0.00 0.00 5.52
446 447 0.833287 ATCTAGATGTGTGGCCGCTT 59.167 50.000 18.96 1.92 0.00 4.68
447 448 0.108186 TCTAGATGTGTGGCCGCTTG 60.108 55.000 18.96 0.00 0.00 4.01
448 449 0.108186 CTAGATGTGTGGCCGCTTGA 60.108 55.000 18.96 1.04 0.00 3.02
449 450 0.108186 TAGATGTGTGGCCGCTTGAG 60.108 55.000 18.96 0.00 0.00 3.02
450 451 1.672356 GATGTGTGGCCGCTTGAGT 60.672 57.895 18.96 0.00 0.00 3.41
451 452 1.639298 GATGTGTGGCCGCTTGAGTC 61.639 60.000 18.96 5.04 0.00 3.36
452 453 3.050275 GTGTGGCCGCTTGAGTCC 61.050 66.667 18.96 0.00 0.00 3.85
453 454 3.555324 TGTGGCCGCTTGAGTCCA 61.555 61.111 18.96 0.00 0.00 4.02
458 459 0.603975 GGCCGCTTGAGTCCATATCC 60.604 60.000 0.00 0.00 0.00 2.59
462 463 2.288702 CCGCTTGAGTCCATATCCAGAG 60.289 54.545 0.00 0.00 0.00 3.35
481 482 8.546083 TCCAGAGATAAGAATAGAAGCTTTCT 57.454 34.615 0.00 1.90 43.72 2.52
505 506 1.821332 GCTCCTCAGCGATTTGGGG 60.821 63.158 0.00 0.00 40.27 4.96
512 513 0.322456 CAGCGATTTGGGGTTCCTGA 60.322 55.000 0.00 0.00 0.00 3.86
522 523 3.644861 GGTTCCTGACCGTTGGATT 57.355 52.632 0.00 0.00 39.00 3.01
686 687 1.134367 TCGTCATTTCACCTAGAGGCG 59.866 52.381 0.00 0.00 39.32 5.52
695 697 4.317671 TCACCTAGAGGCGTATAAAAGC 57.682 45.455 0.00 0.00 39.32 3.51
806 808 2.022240 CTTCCACTCTCCCCTAGCGC 62.022 65.000 0.00 0.00 0.00 5.92
808 810 3.905678 CACTCTCCCCTAGCGCCG 61.906 72.222 2.29 0.00 0.00 6.46
935 937 1.667154 TTCGACTGCATCCGGAGAGG 61.667 60.000 11.34 2.90 42.97 3.69
1210 1213 2.679342 CCCTGAATCTTCGCCCCCA 61.679 63.158 0.00 0.00 0.00 4.96
1639 3680 2.562298 GGGCAAATGAAGTGTGGATTCA 59.438 45.455 0.00 0.00 40.72 2.57
1714 3755 4.019174 GAGGGAATGCTTCTGATTTCCAA 58.981 43.478 3.25 0.00 39.52 3.53
1844 3885 0.322008 CCAAGGCAAGGTGTCTCTCC 60.322 60.000 0.00 0.00 26.08 3.71
2086 4149 1.400494 GCGTTTGCCGGAATACATCTT 59.600 47.619 5.05 0.00 36.94 2.40
2222 4305 9.617523 TGCTAATGAATGTTTAATCTCATCTCA 57.382 29.630 0.00 0.00 0.00 3.27
2437 4540 6.513393 CGAACAAATCAACTGCTAGAGGTTTT 60.513 38.462 0.00 0.00 0.00 2.43
2755 4878 7.074494 AGGTACTACTCCCTCTATCTCATCTTT 59.926 40.741 0.00 0.00 36.02 2.52
3117 5243 7.094634 ACACACTAATCAACTTTCTGCATTAGG 60.095 37.037 0.00 0.00 33.20 2.69
3490 6106 9.372369 GCAAGGCTTATAGTCTCGAATTATTAT 57.628 33.333 0.00 0.00 0.00 1.28
3562 6180 7.090953 TCCAAAATTTCTCACGTACTTTGTT 57.909 32.000 0.00 0.00 0.00 2.83
3681 6299 8.998814 TCTGGGTTATCTAGGATCAATTACAAA 58.001 33.333 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.360350 AGGCCAGCGTTGTCCATG 60.360 61.111 5.01 0.00 0.00 3.66
1 2 2.360350 CAGGCCAGCGTTGTCCAT 60.360 61.111 5.01 0.00 0.00 3.41
20 21 4.452733 GTGGTTCCTCGAGCGGGG 62.453 72.222 6.99 1.49 37.02 5.73
21 22 3.691342 TGTGGTTCCTCGAGCGGG 61.691 66.667 6.99 0.00 0.00 6.13
22 23 2.432628 GTGTGGTTCCTCGAGCGG 60.433 66.667 6.99 0.00 0.00 5.52
23 24 2.022129 GTGTGTGGTTCCTCGAGCG 61.022 63.158 6.99 0.19 0.00 5.03
24 25 1.668151 GGTGTGTGGTTCCTCGAGC 60.668 63.158 6.99 0.00 0.00 5.03
25 26 0.038159 GAGGTGTGTGGTTCCTCGAG 60.038 60.000 5.13 5.13 38.37 4.04
26 27 2.046938 GAGGTGTGTGGTTCCTCGA 58.953 57.895 0.00 0.00 38.37 4.04
27 28 4.675404 GAGGTGTGTGGTTCCTCG 57.325 61.111 0.00 0.00 38.37 4.63
28 29 3.914426 ATATGAGGTGTGTGGTTCCTC 57.086 47.619 0.00 0.00 45.46 3.71
29 30 3.587061 TGAATATGAGGTGTGTGGTTCCT 59.413 43.478 0.00 0.00 0.00 3.36
30 31 3.950397 TGAATATGAGGTGTGTGGTTCC 58.050 45.455 0.00 0.00 0.00 3.62
31 32 5.957842 TTTGAATATGAGGTGTGTGGTTC 57.042 39.130 0.00 0.00 0.00 3.62
32 33 5.010617 GGTTTTGAATATGAGGTGTGTGGTT 59.989 40.000 0.00 0.00 0.00 3.67
33 34 4.522789 GGTTTTGAATATGAGGTGTGTGGT 59.477 41.667 0.00 0.00 0.00 4.16
34 35 4.766891 AGGTTTTGAATATGAGGTGTGTGG 59.233 41.667 0.00 0.00 0.00 4.17
35 36 5.473162 TGAGGTTTTGAATATGAGGTGTGTG 59.527 40.000 0.00 0.00 0.00 3.82
36 37 5.630121 TGAGGTTTTGAATATGAGGTGTGT 58.370 37.500 0.00 0.00 0.00 3.72
37 38 6.764308 ATGAGGTTTTGAATATGAGGTGTG 57.236 37.500 0.00 0.00 0.00 3.82
38 39 7.781324 AAATGAGGTTTTGAATATGAGGTGT 57.219 32.000 0.00 0.00 0.00 4.16
72 73 1.726791 GCCTTGTGACACGTCTATGTG 59.273 52.381 0.22 0.75 45.41 3.21
73 74 1.343142 TGCCTTGTGACACGTCTATGT 59.657 47.619 0.22 0.00 34.78 2.29
74 75 2.078849 TGCCTTGTGACACGTCTATG 57.921 50.000 0.22 0.00 0.00 2.23
75 76 2.735444 CGATGCCTTGTGACACGTCTAT 60.735 50.000 0.22 0.00 0.00 1.98
76 77 1.402325 CGATGCCTTGTGACACGTCTA 60.402 52.381 0.22 0.00 0.00 2.59
77 78 0.667487 CGATGCCTTGTGACACGTCT 60.667 55.000 0.22 0.00 0.00 4.18
78 79 0.944311 ACGATGCCTTGTGACACGTC 60.944 55.000 0.22 0.00 0.00 4.34
79 80 0.531974 AACGATGCCTTGTGACACGT 60.532 50.000 0.22 0.00 0.00 4.49
80 81 0.110688 CAACGATGCCTTGTGACACG 60.111 55.000 0.22 0.00 0.00 4.49
81 82 0.944386 ACAACGATGCCTTGTGACAC 59.056 50.000 0.00 0.00 30.46 3.67
82 83 3.395210 ACAACGATGCCTTGTGACA 57.605 47.368 0.00 0.00 30.46 3.58
85 86 3.753774 GTCACAACGATGCCTTGTG 57.246 52.632 9.00 9.00 46.68 3.33
96 97 3.303791 GGATTTTGTCACCTCGTCACAAC 60.304 47.826 0.00 0.00 29.74 3.32
97 98 2.875933 GGATTTTGTCACCTCGTCACAA 59.124 45.455 0.00 0.00 0.00 3.33
98 99 2.489971 GGATTTTGTCACCTCGTCACA 58.510 47.619 0.00 0.00 0.00 3.58
99 100 1.459592 CGGATTTTGTCACCTCGTCAC 59.540 52.381 0.00 0.00 0.00 3.67
100 101 1.341852 TCGGATTTTGTCACCTCGTCA 59.658 47.619 0.00 0.00 0.00 4.35
101 102 2.074547 TCGGATTTTGTCACCTCGTC 57.925 50.000 0.00 0.00 0.00 4.20
102 103 2.536761 TTCGGATTTTGTCACCTCGT 57.463 45.000 0.00 0.00 0.00 4.18
103 104 3.483574 CGAATTCGGATTTTGTCACCTCG 60.484 47.826 20.16 0.00 35.37 4.63
104 105 3.435671 ACGAATTCGGATTTTGTCACCTC 59.564 43.478 29.79 0.00 44.95 3.85
105 106 3.408634 ACGAATTCGGATTTTGTCACCT 58.591 40.909 29.79 2.93 44.95 4.00
106 107 3.824414 ACGAATTCGGATTTTGTCACC 57.176 42.857 29.79 0.00 44.95 4.02
107 108 4.201783 CCCTACGAATTCGGATTTTGTCAC 60.202 45.833 29.79 0.00 44.95 3.67
108 109 3.936453 CCCTACGAATTCGGATTTTGTCA 59.064 43.478 29.79 4.46 44.95 3.58
109 110 3.937079 ACCCTACGAATTCGGATTTTGTC 59.063 43.478 29.79 0.00 44.95 3.18
110 111 3.937079 GACCCTACGAATTCGGATTTTGT 59.063 43.478 29.79 18.37 44.95 2.83
111 112 3.000925 CGACCCTACGAATTCGGATTTTG 59.999 47.826 29.79 15.62 44.95 2.44
112 113 3.192466 CGACCCTACGAATTCGGATTTT 58.808 45.455 29.79 12.48 44.95 1.82
113 114 2.817901 CGACCCTACGAATTCGGATTT 58.182 47.619 29.79 12.85 44.95 2.17
114 115 1.537562 GCGACCCTACGAATTCGGATT 60.538 52.381 29.79 13.21 44.95 3.01
115 116 0.031721 GCGACCCTACGAATTCGGAT 59.968 55.000 29.79 13.92 44.95 4.18
116 117 1.434696 GCGACCCTACGAATTCGGA 59.565 57.895 29.79 22.35 44.95 4.55
117 118 1.590792 GGCGACCCTACGAATTCGG 60.591 63.158 29.79 15.41 44.95 4.30
118 119 4.008035 GGCGACCCTACGAATTCG 57.992 61.111 25.64 25.64 46.33 3.34
130 131 1.629345 CTTTTCGTAACCCGGGCGAC 61.629 60.000 24.08 18.23 37.11 5.19
131 132 1.374505 CTTTTCGTAACCCGGGCGA 60.375 57.895 24.08 19.68 37.11 5.54
132 133 0.741927 ATCTTTTCGTAACCCGGGCG 60.742 55.000 24.08 17.32 37.11 6.13
133 134 0.730840 CATCTTTTCGTAACCCGGGC 59.269 55.000 24.08 2.74 37.11 6.13
134 135 2.277084 CTCATCTTTTCGTAACCCGGG 58.723 52.381 22.25 22.25 37.11 5.73
135 136 2.671396 CACTCATCTTTTCGTAACCCGG 59.329 50.000 0.00 0.00 37.11 5.73
136 137 2.093783 GCACTCATCTTTTCGTAACCCG 59.906 50.000 0.00 0.00 38.13 5.28
137 138 2.093783 CGCACTCATCTTTTCGTAACCC 59.906 50.000 0.00 0.00 0.00 4.11
138 139 2.093783 CCGCACTCATCTTTTCGTAACC 59.906 50.000 0.00 0.00 0.00 2.85
139 140 2.093783 CCCGCACTCATCTTTTCGTAAC 59.906 50.000 0.00 0.00 0.00 2.50
140 141 2.028839 TCCCGCACTCATCTTTTCGTAA 60.029 45.455 0.00 0.00 0.00 3.18
141 142 1.546923 TCCCGCACTCATCTTTTCGTA 59.453 47.619 0.00 0.00 0.00 3.43
142 143 0.320374 TCCCGCACTCATCTTTTCGT 59.680 50.000 0.00 0.00 0.00 3.85
143 144 1.438651 TTCCCGCACTCATCTTTTCG 58.561 50.000 0.00 0.00 0.00 3.46
144 145 3.565516 GTTTTCCCGCACTCATCTTTTC 58.434 45.455 0.00 0.00 0.00 2.29
145 146 2.031157 CGTTTTCCCGCACTCATCTTTT 60.031 45.455 0.00 0.00 0.00 2.27
146 147 1.535462 CGTTTTCCCGCACTCATCTTT 59.465 47.619 0.00 0.00 0.00 2.52
147 148 1.156736 CGTTTTCCCGCACTCATCTT 58.843 50.000 0.00 0.00 0.00 2.40
148 149 0.320374 TCGTTTTCCCGCACTCATCT 59.680 50.000 0.00 0.00 0.00 2.90
149 150 0.442699 GTCGTTTTCCCGCACTCATC 59.557 55.000 0.00 0.00 0.00 2.92
150 151 1.289109 CGTCGTTTTCCCGCACTCAT 61.289 55.000 0.00 0.00 0.00 2.90
151 152 1.952133 CGTCGTTTTCCCGCACTCA 60.952 57.895 0.00 0.00 0.00 3.41
152 153 2.664436 CCGTCGTTTTCCCGCACTC 61.664 63.158 0.00 0.00 0.00 3.51
153 154 2.663852 CCGTCGTTTTCCCGCACT 60.664 61.111 0.00 0.00 0.00 4.40
154 155 4.379143 GCCGTCGTTTTCCCGCAC 62.379 66.667 0.00 0.00 0.00 5.34
155 156 2.783241 TATGCCGTCGTTTTCCCGCA 62.783 55.000 0.00 0.00 0.00 5.69
156 157 1.433837 ATATGCCGTCGTTTTCCCGC 61.434 55.000 0.00 0.00 0.00 6.13
157 158 0.580104 GATATGCCGTCGTTTTCCCG 59.420 55.000 0.00 0.00 0.00 5.14
158 159 0.580104 CGATATGCCGTCGTTTTCCC 59.420 55.000 0.00 0.00 34.56 3.97
159 160 0.580104 CCGATATGCCGTCGTTTTCC 59.420 55.000 0.00 0.00 37.39 3.13
160 161 1.563111 TCCGATATGCCGTCGTTTTC 58.437 50.000 0.00 0.00 37.39 2.29
161 162 2.132762 GATCCGATATGCCGTCGTTTT 58.867 47.619 0.00 0.00 37.39 2.43
162 163 1.779569 GATCCGATATGCCGTCGTTT 58.220 50.000 0.00 0.00 37.39 3.60
163 164 0.386858 CGATCCGATATGCCGTCGTT 60.387 55.000 0.00 0.00 37.39 3.85
164 165 1.209383 CGATCCGATATGCCGTCGT 59.791 57.895 0.00 0.00 37.39 4.34
165 166 2.152699 GCGATCCGATATGCCGTCG 61.153 63.158 0.00 0.00 38.75 5.12
166 167 1.805945 GGCGATCCGATATGCCGTC 60.806 63.158 8.05 0.00 37.81 4.79
167 168 2.261671 GGCGATCCGATATGCCGT 59.738 61.111 8.05 0.00 37.81 5.68
169 170 0.535335 TTAGGGCGATCCGATATGCC 59.465 55.000 13.45 13.45 46.82 4.40
170 171 1.476891 TCTTAGGGCGATCCGATATGC 59.523 52.381 0.00 0.00 41.52 3.14
171 172 2.478031 CGTCTTAGGGCGATCCGATATG 60.478 54.545 0.00 0.00 41.52 1.78
172 173 1.743958 CGTCTTAGGGCGATCCGATAT 59.256 52.381 0.00 0.00 41.52 1.63
173 174 1.162698 CGTCTTAGGGCGATCCGATA 58.837 55.000 0.00 0.00 41.52 2.92
174 175 0.536687 TCGTCTTAGGGCGATCCGAT 60.537 55.000 0.00 0.00 41.52 4.18
175 176 1.153107 TCGTCTTAGGGCGATCCGA 60.153 57.895 0.00 0.00 41.52 4.55
176 177 1.008767 GTCGTCTTAGGGCGATCCG 60.009 63.158 4.41 0.00 41.52 4.18
177 178 1.008767 CGTCGTCTTAGGGCGATCC 60.009 63.158 4.41 0.00 39.38 3.36
178 179 1.008767 CCGTCGTCTTAGGGCGATC 60.009 63.158 4.41 0.00 39.38 3.69
179 180 3.117372 CCGTCGTCTTAGGGCGAT 58.883 61.111 4.41 0.00 39.38 4.58
180 181 3.818787 GCCGTCGTCTTAGGGCGA 61.819 66.667 0.00 0.00 40.29 5.54
183 184 1.601419 TTGAGGCCGTCGTCTTAGGG 61.601 60.000 0.00 0.00 0.00 3.53
184 185 0.179134 CTTGAGGCCGTCGTCTTAGG 60.179 60.000 0.00 0.00 0.00 2.69
185 186 0.179134 CCTTGAGGCCGTCGTCTTAG 60.179 60.000 0.00 0.00 0.00 2.18
186 187 0.896940 ACCTTGAGGCCGTCGTCTTA 60.897 55.000 0.00 0.00 39.32 2.10
187 188 0.896940 TACCTTGAGGCCGTCGTCTT 60.897 55.000 0.00 0.00 39.32 3.01
188 189 1.303888 TACCTTGAGGCCGTCGTCT 60.304 57.895 0.00 0.00 39.32 4.18
189 190 1.139095 CTACCTTGAGGCCGTCGTC 59.861 63.158 0.00 0.00 39.32 4.20
190 191 1.303888 TCTACCTTGAGGCCGTCGT 60.304 57.895 0.00 0.00 39.32 4.34
191 192 1.139095 GTCTACCTTGAGGCCGTCG 59.861 63.158 0.00 0.00 39.32 5.12
192 193 1.255667 TGGTCTACCTTGAGGCCGTC 61.256 60.000 0.00 0.00 44.84 4.79
193 194 1.229082 TGGTCTACCTTGAGGCCGT 60.229 57.895 0.00 0.00 44.84 5.68
194 195 0.970937 TCTGGTCTACCTTGAGGCCG 60.971 60.000 0.00 0.00 44.84 6.13
195 196 0.537653 GTCTGGTCTACCTTGAGGCC 59.462 60.000 0.00 0.00 41.99 5.19
196 197 0.537653 GGTCTGGTCTACCTTGAGGC 59.462 60.000 0.02 0.00 39.32 4.70
197 198 0.818296 CGGTCTGGTCTACCTTGAGG 59.182 60.000 0.02 0.00 42.17 3.86
198 199 0.173708 GCGGTCTGGTCTACCTTGAG 59.826 60.000 0.02 0.00 34.66 3.02
199 200 0.541063 TGCGGTCTGGTCTACCTTGA 60.541 55.000 0.02 0.00 34.66 3.02
200 201 0.320374 TTGCGGTCTGGTCTACCTTG 59.680 55.000 0.02 0.00 34.66 3.61
201 202 1.053424 TTTGCGGTCTGGTCTACCTT 58.947 50.000 0.02 0.00 34.66 3.50
202 203 1.053424 TTTTGCGGTCTGGTCTACCT 58.947 50.000 0.02 0.00 34.66 3.08
203 204 1.154197 GTTTTGCGGTCTGGTCTACC 58.846 55.000 0.00 0.00 0.00 3.18
204 205 1.154197 GGTTTTGCGGTCTGGTCTAC 58.846 55.000 0.00 0.00 0.00 2.59
205 206 1.053424 AGGTTTTGCGGTCTGGTCTA 58.947 50.000 0.00 0.00 0.00 2.59
206 207 0.535102 CAGGTTTTGCGGTCTGGTCT 60.535 55.000 0.00 0.00 0.00 3.85
207 208 1.949257 CAGGTTTTGCGGTCTGGTC 59.051 57.895 0.00 0.00 0.00 4.02
208 209 2.193536 GCAGGTTTTGCGGTCTGGT 61.194 57.895 0.00 0.00 44.09 4.00
209 210 2.644992 GCAGGTTTTGCGGTCTGG 59.355 61.111 0.00 0.00 44.09 3.86
217 218 3.684103 TTGTTCGTACTGCAGGTTTTG 57.316 42.857 19.93 2.99 0.00 2.44
218 219 3.880490 TGATTGTTCGTACTGCAGGTTTT 59.120 39.130 19.93 0.00 0.00 2.43
219 220 3.472652 TGATTGTTCGTACTGCAGGTTT 58.527 40.909 19.93 0.00 0.00 3.27
220 221 3.120321 TGATTGTTCGTACTGCAGGTT 57.880 42.857 19.93 0.00 0.00 3.50
221 222 2.831685 TGATTGTTCGTACTGCAGGT 57.168 45.000 19.93 6.35 0.00 4.00
222 223 2.282555 CGATGATTGTTCGTACTGCAGG 59.717 50.000 19.93 0.00 32.08 4.85
223 224 3.000674 GTCGATGATTGTTCGTACTGCAG 60.001 47.826 13.48 13.48 37.82 4.41
224 225 2.921121 GTCGATGATTGTTCGTACTGCA 59.079 45.455 0.00 0.00 37.82 4.41
225 226 2.035674 CGTCGATGATTGTTCGTACTGC 60.036 50.000 0.00 0.00 37.82 4.40
226 227 3.422655 TCGTCGATGATTGTTCGTACTG 58.577 45.455 2.39 0.00 37.82 2.74
227 228 3.126514 ACTCGTCGATGATTGTTCGTACT 59.873 43.478 7.99 0.00 37.82 2.73
228 229 3.423571 ACTCGTCGATGATTGTTCGTAC 58.576 45.455 7.99 0.00 37.82 3.67
229 230 3.752412 ACTCGTCGATGATTGTTCGTA 57.248 42.857 7.99 0.00 37.82 3.43
230 231 2.631418 ACTCGTCGATGATTGTTCGT 57.369 45.000 7.99 0.00 37.82 3.85
231 232 3.936661 TCTACTCGTCGATGATTGTTCG 58.063 45.455 7.99 0.00 37.94 3.95
232 233 6.627690 TTTTCTACTCGTCGATGATTGTTC 57.372 37.500 7.99 0.00 0.00 3.18
233 234 7.974501 AGTATTTTCTACTCGTCGATGATTGTT 59.025 33.333 7.99 0.00 0.00 2.83
234 235 7.481642 AGTATTTTCTACTCGTCGATGATTGT 58.518 34.615 7.99 6.28 0.00 2.71
235 236 7.858382 AGAGTATTTTCTACTCGTCGATGATTG 59.142 37.037 7.99 0.00 46.24 2.67
236 237 7.932335 AGAGTATTTTCTACTCGTCGATGATT 58.068 34.615 7.99 5.17 46.24 2.57
237 238 7.499321 AGAGTATTTTCTACTCGTCGATGAT 57.501 36.000 7.99 1.57 46.24 2.45
238 239 6.922247 AGAGTATTTTCTACTCGTCGATGA 57.078 37.500 7.21 7.21 46.24 2.92
239 240 7.696872 TCAAAGAGTATTTTCTACTCGTCGATG 59.303 37.037 0.00 0.00 46.24 3.84
240 241 7.759465 TCAAAGAGTATTTTCTACTCGTCGAT 58.241 34.615 0.00 0.00 46.24 3.59
241 242 7.137490 TCAAAGAGTATTTTCTACTCGTCGA 57.863 36.000 6.73 0.00 46.24 4.20
242 243 7.792383 TTCAAAGAGTATTTTCTACTCGTCG 57.208 36.000 6.73 0.00 46.24 5.12
275 276 9.410556 GTTCTAGTTATTCACATTGTGCAAATT 57.589 29.630 12.04 5.63 32.98 1.82
276 277 8.575589 TGTTCTAGTTATTCACATTGTGCAAAT 58.424 29.630 12.04 9.87 32.98 2.32
277 278 7.935520 TGTTCTAGTTATTCACATTGTGCAAA 58.064 30.769 12.04 2.78 32.98 3.68
278 279 7.503521 TGTTCTAGTTATTCACATTGTGCAA 57.496 32.000 12.04 7.82 32.98 4.08
279 280 7.503521 TTGTTCTAGTTATTCACATTGTGCA 57.496 32.000 12.04 1.22 32.98 4.57
280 281 8.853345 CAATTGTTCTAGTTATTCACATTGTGC 58.147 33.333 12.04 0.00 32.98 4.57
281 282 8.853345 GCAATTGTTCTAGTTATTCACATTGTG 58.147 33.333 10.64 10.64 34.45 3.33
282 283 8.575589 TGCAATTGTTCTAGTTATTCACATTGT 58.424 29.630 7.40 0.00 0.00 2.71
283 284 8.853345 GTGCAATTGTTCTAGTTATTCACATTG 58.147 33.333 7.40 0.00 0.00 2.82
284 285 8.028938 GGTGCAATTGTTCTAGTTATTCACATT 58.971 33.333 7.40 0.00 0.00 2.71
285 286 7.394359 AGGTGCAATTGTTCTAGTTATTCACAT 59.606 33.333 7.40 0.00 0.00 3.21
286 287 6.714810 AGGTGCAATTGTTCTAGTTATTCACA 59.285 34.615 7.40 0.00 0.00 3.58
287 288 7.023575 CAGGTGCAATTGTTCTAGTTATTCAC 58.976 38.462 7.40 1.96 0.00 3.18
288 289 6.150976 CCAGGTGCAATTGTTCTAGTTATTCA 59.849 38.462 7.40 0.00 0.00 2.57
289 290 6.151144 ACCAGGTGCAATTGTTCTAGTTATTC 59.849 38.462 7.40 0.00 0.00 1.75
290 291 6.010219 ACCAGGTGCAATTGTTCTAGTTATT 58.990 36.000 7.40 0.00 0.00 1.40
291 292 5.415701 CACCAGGTGCAATTGTTCTAGTTAT 59.584 40.000 6.67 0.00 0.00 1.89
292 293 4.759693 CACCAGGTGCAATTGTTCTAGTTA 59.240 41.667 6.67 0.00 0.00 2.24
293 294 3.569701 CACCAGGTGCAATTGTTCTAGTT 59.430 43.478 6.67 0.00 0.00 2.24
294 295 3.149196 CACCAGGTGCAATTGTTCTAGT 58.851 45.455 6.67 0.00 0.00 2.57
295 296 3.411446 TCACCAGGTGCAATTGTTCTAG 58.589 45.455 15.64 0.00 32.98 2.43
296 297 3.500448 TCACCAGGTGCAATTGTTCTA 57.500 42.857 15.64 0.00 32.98 2.10
297 298 2.363306 TCACCAGGTGCAATTGTTCT 57.637 45.000 15.64 0.00 32.98 3.01
298 299 3.665745 AATCACCAGGTGCAATTGTTC 57.334 42.857 15.64 0.56 32.98 3.18
299 300 5.337491 GGATAAATCACCAGGTGCAATTGTT 60.337 40.000 15.64 4.86 32.98 2.83
300 301 4.160252 GGATAAATCACCAGGTGCAATTGT 59.840 41.667 15.64 7.64 32.98 2.71
301 302 4.685924 GGATAAATCACCAGGTGCAATTG 58.314 43.478 15.64 0.00 32.98 2.32
302 303 3.381272 CGGATAAATCACCAGGTGCAATT 59.619 43.478 15.64 7.69 32.98 2.32
303 304 2.951642 CGGATAAATCACCAGGTGCAAT 59.048 45.455 15.64 0.84 32.98 3.56
304 305 2.026729 TCGGATAAATCACCAGGTGCAA 60.027 45.455 15.64 0.00 32.98 4.08
305 306 1.557371 TCGGATAAATCACCAGGTGCA 59.443 47.619 15.64 4.44 32.98 4.57
306 307 1.940613 GTCGGATAAATCACCAGGTGC 59.059 52.381 15.64 0.00 32.98 5.01
307 308 3.260475 TGTCGGATAAATCACCAGGTG 57.740 47.619 14.19 14.19 34.45 4.00
308 309 3.992943 TTGTCGGATAAATCACCAGGT 57.007 42.857 0.00 0.00 0.00 4.00
309 310 4.199310 ACATTGTCGGATAAATCACCAGG 58.801 43.478 0.00 0.00 0.00 4.45
310 311 4.273480 GGACATTGTCGGATAAATCACCAG 59.727 45.833 10.56 0.00 32.65 4.00
311 312 4.196193 GGACATTGTCGGATAAATCACCA 58.804 43.478 10.56 0.00 32.65 4.17
312 313 4.196193 TGGACATTGTCGGATAAATCACC 58.804 43.478 10.56 0.00 32.65 4.02
313 314 5.811399 TTGGACATTGTCGGATAAATCAC 57.189 39.130 10.56 0.00 32.65 3.06
314 315 5.943416 AGTTTGGACATTGTCGGATAAATCA 59.057 36.000 10.56 0.00 32.65 2.57
315 316 6.093495 TCAGTTTGGACATTGTCGGATAAATC 59.907 38.462 10.56 0.00 32.65 2.17
316 317 5.943416 TCAGTTTGGACATTGTCGGATAAAT 59.057 36.000 10.56 0.00 32.65 1.40
317 318 5.309638 TCAGTTTGGACATTGTCGGATAAA 58.690 37.500 10.56 6.83 32.65 1.40
318 319 4.900684 TCAGTTTGGACATTGTCGGATAA 58.099 39.130 10.56 1.41 32.65 1.75
319 320 4.545208 TCAGTTTGGACATTGTCGGATA 57.455 40.909 10.56 0.00 32.65 2.59
320 321 3.417069 TCAGTTTGGACATTGTCGGAT 57.583 42.857 10.56 0.00 32.65 4.18
321 322 2.920724 TCAGTTTGGACATTGTCGGA 57.079 45.000 10.56 0.00 32.65 4.55
322 323 2.162208 CCATCAGTTTGGACATTGTCGG 59.838 50.000 10.56 0.00 39.25 4.79
323 324 2.414559 GCCATCAGTTTGGACATTGTCG 60.415 50.000 10.56 0.00 39.25 4.35
324 325 2.414559 CGCCATCAGTTTGGACATTGTC 60.415 50.000 8.34 8.34 39.25 3.18
325 326 1.541147 CGCCATCAGTTTGGACATTGT 59.459 47.619 0.00 0.00 39.25 2.71
326 327 1.135315 CCGCCATCAGTTTGGACATTG 60.135 52.381 0.00 0.00 39.25 2.82
327 328 1.176527 CCGCCATCAGTTTGGACATT 58.823 50.000 0.00 0.00 39.25 2.71
328 329 0.680921 CCCGCCATCAGTTTGGACAT 60.681 55.000 0.00 0.00 39.25 3.06
329 330 1.303236 CCCGCCATCAGTTTGGACA 60.303 57.895 0.00 0.00 39.25 4.02
330 331 0.035820 TACCCGCCATCAGTTTGGAC 60.036 55.000 0.00 0.00 39.25 4.02
331 332 0.693622 TTACCCGCCATCAGTTTGGA 59.306 50.000 0.00 0.00 39.25 3.53
332 333 1.094785 CTTACCCGCCATCAGTTTGG 58.905 55.000 0.00 0.00 39.94 3.28
333 334 1.094785 CCTTACCCGCCATCAGTTTG 58.905 55.000 0.00 0.00 0.00 2.93
334 335 0.696501 ACCTTACCCGCCATCAGTTT 59.303 50.000 0.00 0.00 0.00 2.66
335 336 0.035439 CACCTTACCCGCCATCAGTT 60.035 55.000 0.00 0.00 0.00 3.16
336 337 0.907704 TCACCTTACCCGCCATCAGT 60.908 55.000 0.00 0.00 0.00 3.41
337 338 0.469917 ATCACCTTACCCGCCATCAG 59.530 55.000 0.00 0.00 0.00 2.90
338 339 0.916086 AATCACCTTACCCGCCATCA 59.084 50.000 0.00 0.00 0.00 3.07
339 340 2.922740 TAATCACCTTACCCGCCATC 57.077 50.000 0.00 0.00 0.00 3.51
340 341 2.224769 CCATAATCACCTTACCCGCCAT 60.225 50.000 0.00 0.00 0.00 4.40
341 342 1.142060 CCATAATCACCTTACCCGCCA 59.858 52.381 0.00 0.00 0.00 5.69
342 343 1.418637 TCCATAATCACCTTACCCGCC 59.581 52.381 0.00 0.00 0.00 6.13
343 344 2.158871 TGTCCATAATCACCTTACCCGC 60.159 50.000 0.00 0.00 0.00 6.13
344 345 3.463944 GTGTCCATAATCACCTTACCCG 58.536 50.000 0.00 0.00 0.00 5.28
345 346 3.463944 CGTGTCCATAATCACCTTACCC 58.536 50.000 0.00 0.00 0.00 3.69
346 347 3.463944 CCGTGTCCATAATCACCTTACC 58.536 50.000 0.00 0.00 0.00 2.85
347 348 3.133362 TCCCGTGTCCATAATCACCTTAC 59.867 47.826 0.00 0.00 0.00 2.34
348 349 3.376636 TCCCGTGTCCATAATCACCTTA 58.623 45.455 0.00 0.00 0.00 2.69
349 350 2.193127 TCCCGTGTCCATAATCACCTT 58.807 47.619 0.00 0.00 0.00 3.50
350 351 1.874129 TCCCGTGTCCATAATCACCT 58.126 50.000 0.00 0.00 0.00 4.00
351 352 2.158813 ACATCCCGTGTCCATAATCACC 60.159 50.000 0.00 0.00 35.77 4.02
352 353 3.194005 ACATCCCGTGTCCATAATCAC 57.806 47.619 0.00 0.00 35.77 3.06
362 363 1.626356 CCATCCAGGACATCCCGTGT 61.626 60.000 0.00 0.00 45.83 4.49
363 364 1.146930 CCATCCAGGACATCCCGTG 59.853 63.158 0.00 0.00 41.22 4.94
364 365 1.002921 TCCATCCAGGACATCCCGT 59.997 57.895 0.00 0.00 43.07 5.28
365 366 1.050988 ACTCCATCCAGGACATCCCG 61.051 60.000 0.00 0.00 43.07 5.14
366 367 2.103153 TACTCCATCCAGGACATCCC 57.897 55.000 0.00 0.00 43.07 3.85
367 368 3.513515 GAGATACTCCATCCAGGACATCC 59.486 52.174 0.00 0.00 43.07 3.51
368 369 3.192422 CGAGATACTCCATCCAGGACATC 59.808 52.174 0.00 0.00 43.07 3.06
369 370 3.161067 CGAGATACTCCATCCAGGACAT 58.839 50.000 0.00 0.00 43.07 3.06
370 371 2.174854 TCGAGATACTCCATCCAGGACA 59.825 50.000 0.00 0.00 43.07 4.02
371 372 2.865079 TCGAGATACTCCATCCAGGAC 58.135 52.381 0.00 0.00 43.07 3.85
372 373 3.595190 TTCGAGATACTCCATCCAGGA 57.405 47.619 0.00 0.00 46.75 3.86
373 374 3.639094 AGTTTCGAGATACTCCATCCAGG 59.361 47.826 0.00 0.00 33.75 4.45
374 375 4.615949 CAGTTTCGAGATACTCCATCCAG 58.384 47.826 0.00 0.00 33.75 3.86
375 376 3.181475 GCAGTTTCGAGATACTCCATCCA 60.181 47.826 0.00 0.00 33.75 3.41
376 377 3.385577 GCAGTTTCGAGATACTCCATCC 58.614 50.000 0.00 0.00 33.75 3.51
377 378 3.046390 CGCAGTTTCGAGATACTCCATC 58.954 50.000 0.00 0.00 0.00 3.51
378 379 2.427453 ACGCAGTTTCGAGATACTCCAT 59.573 45.455 0.00 0.00 37.78 3.41
379 380 1.816835 ACGCAGTTTCGAGATACTCCA 59.183 47.619 0.00 0.00 37.78 3.86
380 381 2.563471 ACGCAGTTTCGAGATACTCC 57.437 50.000 0.00 0.00 37.78 3.85
399 400 1.031235 TTGTACACTTGTCGACCCGA 58.969 50.000 14.12 0.00 0.00 5.14
400 401 1.134226 GTTGTACACTTGTCGACCCG 58.866 55.000 14.12 6.37 0.00 5.28
401 402 1.862827 GTGTTGTACACTTGTCGACCC 59.137 52.381 14.12 0.00 45.27 4.46
402 403 1.519758 CGTGTTGTACACTTGTCGACC 59.480 52.381 14.12 0.00 46.46 4.79
403 404 1.519758 CCGTGTTGTACACTTGTCGAC 59.480 52.381 9.11 9.11 46.46 4.20
404 405 1.842720 CCGTGTTGTACACTTGTCGA 58.157 50.000 0.00 0.00 46.46 4.20
405 406 0.231279 GCCGTGTTGTACACTTGTCG 59.769 55.000 0.00 0.00 46.46 4.35
406 407 0.584876 GGCCGTGTTGTACACTTGTC 59.415 55.000 0.00 0.00 46.46 3.18
407 408 1.155424 CGGCCGTGTTGTACACTTGT 61.155 55.000 19.50 0.00 46.46 3.16
408 409 0.876777 TCGGCCGTGTTGTACACTTG 60.877 55.000 27.15 0.00 46.46 3.16
409 410 0.034337 ATCGGCCGTGTTGTACACTT 59.966 50.000 27.15 0.00 46.46 3.16
410 411 0.389426 GATCGGCCGTGTTGTACACT 60.389 55.000 27.15 0.00 46.46 3.55
411 412 0.389426 AGATCGGCCGTGTTGTACAC 60.389 55.000 27.15 7.03 45.26 2.90
412 413 1.133598 CTAGATCGGCCGTGTTGTACA 59.866 52.381 27.15 2.48 0.00 2.90
413 414 1.402968 TCTAGATCGGCCGTGTTGTAC 59.597 52.381 27.15 9.59 0.00 2.90
414 415 1.753930 TCTAGATCGGCCGTGTTGTA 58.246 50.000 27.15 12.86 0.00 2.41
415 416 1.112113 ATCTAGATCGGCCGTGTTGT 58.888 50.000 27.15 12.39 0.00 3.32
416 417 1.202417 ACATCTAGATCGGCCGTGTTG 60.202 52.381 27.15 15.69 0.00 3.33
417 418 1.112113 ACATCTAGATCGGCCGTGTT 58.888 50.000 27.15 13.86 0.00 3.32
418 419 0.385751 CACATCTAGATCGGCCGTGT 59.614 55.000 27.15 17.40 0.00 4.49
419 420 0.385751 ACACATCTAGATCGGCCGTG 59.614 55.000 27.15 16.67 0.00 4.94
420 421 0.385751 CACACATCTAGATCGGCCGT 59.614 55.000 27.15 12.96 0.00 5.68
421 422 0.319040 CCACACATCTAGATCGGCCG 60.319 60.000 22.12 22.12 0.00 6.13
422 423 0.601311 GCCACACATCTAGATCGGCC 60.601 60.000 16.17 0.00 31.76 6.13
423 424 0.601311 GGCCACACATCTAGATCGGC 60.601 60.000 17.79 17.79 37.33 5.54
424 425 0.319040 CGGCCACACATCTAGATCGG 60.319 60.000 2.24 2.65 0.00 4.18
425 426 0.941463 GCGGCCACACATCTAGATCG 60.941 60.000 2.24 2.83 0.00 3.69
426 427 0.390860 AGCGGCCACACATCTAGATC 59.609 55.000 2.24 0.00 0.00 2.75
427 428 0.833287 AAGCGGCCACACATCTAGAT 59.167 50.000 2.24 0.00 0.00 1.98
428 429 0.108186 CAAGCGGCCACACATCTAGA 60.108 55.000 2.24 0.00 0.00 2.43
429 430 0.108186 TCAAGCGGCCACACATCTAG 60.108 55.000 2.24 0.00 0.00 2.43
430 431 0.108186 CTCAAGCGGCCACACATCTA 60.108 55.000 2.24 0.00 0.00 1.98
431 432 1.376424 CTCAAGCGGCCACACATCT 60.376 57.895 2.24 0.00 0.00 2.90
432 433 1.639298 GACTCAAGCGGCCACACATC 61.639 60.000 2.24 0.00 0.00 3.06
433 434 1.672356 GACTCAAGCGGCCACACAT 60.672 57.895 2.24 0.00 0.00 3.21
434 435 2.280797 GACTCAAGCGGCCACACA 60.281 61.111 2.24 0.00 0.00 3.72
435 436 3.050275 GGACTCAAGCGGCCACAC 61.050 66.667 2.24 0.00 0.00 3.82
436 437 1.549243 TATGGACTCAAGCGGCCACA 61.549 55.000 2.24 0.00 32.42 4.17
437 438 0.179045 ATATGGACTCAAGCGGCCAC 60.179 55.000 2.24 0.00 32.42 5.01
438 439 0.106708 GATATGGACTCAAGCGGCCA 59.893 55.000 2.24 0.00 34.45 5.36
439 440 0.603975 GGATATGGACTCAAGCGGCC 60.604 60.000 0.00 0.00 0.00 6.13
440 441 0.106708 TGGATATGGACTCAAGCGGC 59.893 55.000 0.00 0.00 0.00 6.53
441 442 1.688735 TCTGGATATGGACTCAAGCGG 59.311 52.381 0.00 0.00 0.00 5.52
442 443 2.625314 TCTCTGGATATGGACTCAAGCG 59.375 50.000 0.00 0.00 0.00 4.68
443 444 4.888326 ATCTCTGGATATGGACTCAAGC 57.112 45.455 0.00 0.00 0.00 4.01
444 445 7.773489 TCTTATCTCTGGATATGGACTCAAG 57.227 40.000 0.00 0.00 34.78 3.02
445 446 8.733092 ATTCTTATCTCTGGATATGGACTCAA 57.267 34.615 0.00 0.00 34.78 3.02
446 447 9.473007 CTATTCTTATCTCTGGATATGGACTCA 57.527 37.037 0.00 0.00 34.78 3.41
447 448 9.693739 TCTATTCTTATCTCTGGATATGGACTC 57.306 37.037 0.00 0.00 34.78 3.36
450 451 8.976353 GCTTCTATTCTTATCTCTGGATATGGA 58.024 37.037 0.00 0.00 34.78 3.41
451 452 8.980596 AGCTTCTATTCTTATCTCTGGATATGG 58.019 37.037 0.00 0.00 34.78 2.74
462 463 7.519168 GCCGGAAAGAAAGCTTCTATTCTTATC 60.519 40.741 5.05 10.14 43.24 1.75
478 479 1.296715 GCTGAGGAGCCGGAAAGAA 59.703 57.895 5.05 0.00 39.57 2.52
481 482 1.899437 AATCGCTGAGGAGCCGGAAA 61.899 55.000 5.05 0.00 42.91 3.13
505 506 1.165270 CCAATCCAACGGTCAGGAAC 58.835 55.000 6.40 0.00 37.48 3.62
512 513 2.676471 GCAGCCCAATCCAACGGT 60.676 61.111 0.00 0.00 0.00 4.83
633 634 2.631984 GGCAGGCTATTTACGCGC 59.368 61.111 5.73 0.00 0.00 6.86
658 659 2.231235 AGGTGAAATGACGAAAATGCCC 59.769 45.455 0.00 0.00 0.00 5.36
695 697 0.463295 ATCTCCACGCAAGCCATCAG 60.463 55.000 0.00 0.00 45.62 2.90
782 784 0.338120 AGGGGAGAGTGGAAGAGGAG 59.662 60.000 0.00 0.00 0.00 3.69
811 813 4.525949 GCGACGGGGAAGTAGGGC 62.526 72.222 0.00 0.00 0.00 5.19
935 937 1.134068 CCTCCCCCTCGAAATCTTTCC 60.134 57.143 0.00 0.00 33.68 3.13
1639 3680 8.830741 ACATATGGATAGAGCCTAATTTTAGCT 58.169 33.333 7.80 0.00 0.00 3.32
1714 3755 7.394816 AGTATAACCAAAGCAACAGATAGTGT 58.605 34.615 0.00 0.00 43.24 3.55
1819 3860 0.482446 ACACCTTGCCTTGGGATGAA 59.518 50.000 0.00 0.00 0.00 2.57
1844 3885 0.533032 GGAGAAGAACGGGTGAGAGG 59.467 60.000 0.00 0.00 0.00 3.69
2086 4149 2.742589 TGTCACAACACGCACAAAGTAA 59.257 40.909 0.00 0.00 0.00 2.24
2222 4305 6.360370 TCTACTAAGCAACTTTGTGGAGAT 57.640 37.500 4.42 0.00 33.73 2.75
2223 4306 5.801531 TCTACTAAGCAACTTTGTGGAGA 57.198 39.130 4.42 0.00 33.73 3.71
2224 4307 6.402222 AGATCTACTAAGCAACTTTGTGGAG 58.598 40.000 11.89 1.51 39.07 3.86
2225 4308 6.360370 AGATCTACTAAGCAACTTTGTGGA 57.640 37.500 9.53 9.53 39.67 4.02
2226 4309 7.819900 AGTAAGATCTACTAAGCAACTTTGTGG 59.180 37.037 0.00 2.57 32.46 4.17
2755 4878 6.349528 CCACATGTGTTCATTTAGCTGATGAA 60.350 38.462 23.79 18.11 40.24 2.57
2965 5091 0.966875 CTGCCTTGCCATGGTGCTAA 60.967 55.000 14.67 3.35 0.00 3.09
3117 5243 8.244802 TCAGATTCTAGCTCACAACTAAGTAAC 58.755 37.037 0.00 0.00 0.00 2.50
3192 5318 4.523083 TGTCTGCCTATTTGGTATTGGAC 58.477 43.478 0.00 0.00 38.35 4.02
3562 6180 3.493334 TCAGGTCGTTTCTCCTCTACAA 58.507 45.455 0.00 0.00 30.91 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.