Multiple sequence alignment - TraesCS5B01G174400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G174400 chr5B 100.000 5857 0 0 1 5857 320157106 320151250 0.000000e+00 10816.0
1 TraesCS5B01G174400 chr5B 95.652 115 4 1 4941 5054 441672008 441671894 3.600000e-42 183.0
2 TraesCS5B01G174400 chr5B 94.017 117 6 1 4938 5054 573045701 573045816 6.030000e-40 176.0
3 TraesCS5B01G174400 chr5A 92.992 4994 229 45 1 4943 374650276 374645353 0.000000e+00 7171.0
4 TraesCS5B01G174400 chr5A 90.892 527 29 8 5068 5590 374645344 374644833 0.000000e+00 689.0
5 TraesCS5B01G174400 chr5D 92.798 4985 225 47 1 4943 282156705 282151813 0.000000e+00 7094.0
6 TraesCS5B01G174400 chr5D 87.054 672 29 23 5068 5706 282151803 282151157 0.000000e+00 706.0
7 TraesCS5B01G174400 chr5D 90.909 66 6 0 5717 5782 351464597 351464532 8.080000e-14 89.8
8 TraesCS5B01G174400 chr5D 100.000 28 0 0 41 68 284580212 284580239 1.100000e-02 52.8
9 TraesCS5B01G174400 chr3A 78.590 752 146 12 3757 4502 64281497 64282239 3.170000e-132 483.0
10 TraesCS5B01G174400 chr3A 77.391 690 149 6 3768 4455 458680141 458679457 2.540000e-108 403.0
11 TraesCS5B01G174400 chr3A 95.690 116 3 2 4934 5048 405503780 405503666 1.000000e-42 185.0
12 TraesCS5B01G174400 chr3A 91.176 68 4 2 5717 5783 695942669 695942603 2.250000e-14 91.6
13 TraesCS5B01G174400 chr3B 78.209 748 156 6 3757 4502 82625575 82626317 6.870000e-129 472.0
14 TraesCS5B01G174400 chr3B 77.922 693 146 6 3765 4455 443806253 443806940 5.420000e-115 425.0
15 TraesCS5B01G174400 chr7B 97.273 110 3 0 4939 5048 579489714 579489605 2.790000e-43 187.0
16 TraesCS5B01G174400 chr7B 90.909 66 6 0 5717 5782 98752175 98752240 8.080000e-14 89.8
17 TraesCS5B01G174400 chr6B 94.118 119 7 0 4937 5055 591265601 591265483 1.300000e-41 182.0
18 TraesCS5B01G174400 chr6A 94.017 117 7 0 4941 5057 584480890 584480774 1.680000e-40 178.0
19 TraesCS5B01G174400 chr6A 91.304 69 4 2 5717 5784 420567665 420567598 6.250000e-15 93.5
20 TraesCS5B01G174400 chr4A 94.068 118 6 1 4941 5058 718207562 718207446 1.680000e-40 178.0
21 TraesCS5B01G174400 chr4A 90.909 66 6 0 5717 5782 571645716 571645781 8.080000e-14 89.8
22 TraesCS5B01G174400 chr2B 93.277 119 8 0 4941 5059 89504563 89504445 6.030000e-40 176.0
23 TraesCS5B01G174400 chr2A 92.126 127 6 4 4941 5063 57865390 57865516 6.030000e-40 176.0
24 TraesCS5B01G174400 chr1A 93.333 75 5 0 5783 5857 77035026 77034952 1.730000e-20 111.0
25 TraesCS5B01G174400 chr6D 92.308 65 5 0 5717 5781 402563927 402563991 6.250000e-15 93.5
26 TraesCS5B01G174400 chr1B 90.909 66 6 0 5717 5782 85399350 85399415 8.080000e-14 89.8
27 TraesCS5B01G174400 chr1B 91.045 67 5 1 5713 5779 305439110 305439045 8.080000e-14 89.8
28 TraesCS5B01G174400 chr2D 88.732 71 8 0 5714 5784 73267115 73267185 2.910000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G174400 chr5B 320151250 320157106 5856 True 10816 10816 100.000 1 5857 1 chr5B.!!$R1 5856
1 TraesCS5B01G174400 chr5A 374644833 374650276 5443 True 3930 7171 91.942 1 5590 2 chr5A.!!$R1 5589
2 TraesCS5B01G174400 chr5D 282151157 282156705 5548 True 3900 7094 89.926 1 5706 2 chr5D.!!$R2 5705
3 TraesCS5B01G174400 chr3A 64281497 64282239 742 False 483 483 78.590 3757 4502 1 chr3A.!!$F1 745
4 TraesCS5B01G174400 chr3A 458679457 458680141 684 True 403 403 77.391 3768 4455 1 chr3A.!!$R2 687
5 TraesCS5B01G174400 chr3B 82625575 82626317 742 False 472 472 78.209 3757 4502 1 chr3B.!!$F1 745
6 TraesCS5B01G174400 chr3B 443806253 443806940 687 False 425 425 77.922 3765 4455 1 chr3B.!!$F2 690

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
419 438 0.102120 CTCGTCCAGCACCATCTCTC 59.898 60.0 0.00 0.0 0.00 3.20 F
919 989 0.168128 CCAATTCGGGTCGAGTTTGC 59.832 55.0 0.00 0.0 33.83 3.68 F
1105 1177 0.389817 CGAATTGACGCAGAGGACCA 60.390 55.0 0.00 0.0 0.00 4.02 F
1168 1240 0.608582 CCTTCTTGCTCCTGCTGCTT 60.609 55.0 0.00 0.0 40.48 3.91 F
2509 2581 0.756903 ACAACTACCTCAACGGCACT 59.243 50.0 0.00 0.0 35.61 4.40 F
3181 3253 0.530744 CATTCAGCAGCAATGGCAGT 59.469 50.0 0.00 0.0 44.61 4.40 F
4486 4558 1.157870 AGTTCGGCGACAACAACCTG 61.158 55.0 10.16 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1971 2043 0.107703 CAATCCGGTGCTGCTTAGGA 60.108 55.000 0.00 11.53 35.24 2.94 R
2686 2758 0.391130 TTATCACCAGTGTCGCCAGC 60.391 55.000 0.00 0.00 0.00 4.85 R
2694 2766 4.997395 AGTTGTTGTAGCTTATCACCAGTG 59.003 41.667 0.00 0.00 0.00 3.66 R
2695 2767 5.228945 AGTTGTTGTAGCTTATCACCAGT 57.771 39.130 0.00 0.00 0.00 4.00 R
4396 4468 0.663688 CATAGCTGTAGACGTCGCCT 59.336 55.000 10.46 5.89 0.00 5.52 R
4657 4729 0.886563 GCTGCAGCTCCTTGAACATT 59.113 50.000 31.33 0.00 38.21 2.71 R
5644 5755 0.036952 CAACCACCTGCTCGAGATGT 60.037 55.000 18.75 6.35 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 6.749923 AGAAGAAGAAAATAAAGCGAGCAT 57.250 33.333 0.00 0.00 0.00 3.79
75 76 7.150783 AGAAGAAGAAAATAAAGCGAGCATT 57.849 32.000 0.00 0.00 0.00 3.56
76 77 7.597386 AGAAGAAGAAAATAAAGCGAGCATTT 58.403 30.769 0.00 0.00 0.00 2.32
77 78 7.540055 AGAAGAAGAAAATAAAGCGAGCATTTG 59.460 33.333 0.00 0.00 0.00 2.32
78 79 6.095377 AGAAGAAAATAAAGCGAGCATTTGG 58.905 36.000 0.00 0.00 0.00 3.28
79 80 5.643379 AGAAAATAAAGCGAGCATTTGGA 57.357 34.783 0.00 0.00 0.00 3.53
80 81 6.212888 AGAAAATAAAGCGAGCATTTGGAT 57.787 33.333 0.00 0.00 0.00 3.41
84 85 6.651755 AATAAAGCGAGCATTTGGATTTTG 57.348 33.333 0.00 0.00 0.00 2.44
111 112 3.133901 ACCCAAACCAACTCAACCATTTC 59.866 43.478 0.00 0.00 0.00 2.17
112 113 3.494223 CCCAAACCAACTCAACCATTTCC 60.494 47.826 0.00 0.00 0.00 3.13
113 114 3.133721 CCAAACCAACTCAACCATTTCCA 59.866 43.478 0.00 0.00 0.00 3.53
114 115 4.383552 CCAAACCAACTCAACCATTTCCAA 60.384 41.667 0.00 0.00 0.00 3.53
115 116 5.367302 CAAACCAACTCAACCATTTCCAAT 58.633 37.500 0.00 0.00 0.00 3.16
116 117 5.628797 AACCAACTCAACCATTTCCAATT 57.371 34.783 0.00 0.00 0.00 2.32
117 118 5.628797 ACCAACTCAACCATTTCCAATTT 57.371 34.783 0.00 0.00 0.00 1.82
118 119 6.000246 ACCAACTCAACCATTTCCAATTTT 58.000 33.333 0.00 0.00 0.00 1.82
336 349 2.446802 CCCTCCCTCCCCTGCTAC 60.447 72.222 0.00 0.00 0.00 3.58
337 350 2.699496 CCTCCCTCCCCTGCTACT 59.301 66.667 0.00 0.00 0.00 2.57
338 351 1.458588 CCTCCCTCCCCTGCTACTC 60.459 68.421 0.00 0.00 0.00 2.59
339 352 1.458588 CTCCCTCCCCTGCTACTCC 60.459 68.421 0.00 0.00 0.00 3.85
340 353 1.941820 TCCCTCCCCTGCTACTCCT 60.942 63.158 0.00 0.00 0.00 3.69
341 354 0.629571 TCCCTCCCCTGCTACTCCTA 60.630 60.000 0.00 0.00 0.00 2.94
411 430 1.016653 GCTTCTTCCTCGTCCAGCAC 61.017 60.000 0.00 0.00 0.00 4.40
416 435 0.904865 TTCCTCGTCCAGCACCATCT 60.905 55.000 0.00 0.00 0.00 2.90
417 436 1.142748 CCTCGTCCAGCACCATCTC 59.857 63.158 0.00 0.00 0.00 2.75
418 437 1.326213 CCTCGTCCAGCACCATCTCT 61.326 60.000 0.00 0.00 0.00 3.10
419 438 0.102120 CTCGTCCAGCACCATCTCTC 59.898 60.000 0.00 0.00 0.00 3.20
420 439 0.323816 TCGTCCAGCACCATCTCTCT 60.324 55.000 0.00 0.00 0.00 3.10
493 535 1.811266 CACCTGTGGGATCGCTTCG 60.811 63.158 11.46 0.00 36.25 3.79
502 544 0.577269 GGATCGCTTCGTCCATTTCG 59.423 55.000 0.00 0.00 34.57 3.46
572 617 1.112113 GTGCGGGACTCTCCTAATCA 58.888 55.000 0.00 0.00 36.57 2.57
587 632 1.709994 AATCATTCCGGGCTCCCCTC 61.710 60.000 0.00 0.00 42.67 4.30
588 633 2.628187 ATCATTCCGGGCTCCCCTCT 62.628 60.000 0.00 0.00 42.67 3.69
589 634 2.446802 ATTCCGGGCTCCCCTCTC 60.447 66.667 0.00 0.00 42.67 3.20
630 676 2.132740 TTCGTTGCAGCCAATGTTTC 57.867 45.000 0.00 0.00 38.73 2.78
643 689 1.039856 ATGTTTCGCTGGGCTTTTGT 58.960 45.000 0.00 0.00 0.00 2.83
647 693 2.356194 CGCTGGGCTTTTGTTGGC 60.356 61.111 0.00 0.00 0.00 4.52
665 711 1.608801 GGCTTGAAGGTTGCAATTGGG 60.609 52.381 0.59 0.00 0.00 4.12
703 772 1.671328 TGTTTGTGATTTGCGTCCGAA 59.329 42.857 0.00 0.00 0.00 4.30
720 789 2.159653 CCGAATTGGAGCTCGTTTCTTG 60.160 50.000 7.83 1.77 42.00 3.02
722 791 1.896220 ATTGGAGCTCGTTTCTTGCA 58.104 45.000 7.83 0.00 0.00 4.08
747 816 3.553828 TTCGTTCCATGGGTTCTATCC 57.446 47.619 13.02 0.00 0.00 2.59
748 817 2.473070 TCGTTCCATGGGTTCTATCCA 58.527 47.619 13.02 0.00 38.82 3.41
749 818 2.434336 TCGTTCCATGGGTTCTATCCAG 59.566 50.000 13.02 0.00 37.75 3.86
752 821 3.421394 TCCATGGGTTCTATCCAGTCT 57.579 47.619 13.02 0.00 37.75 3.24
753 822 3.309296 TCCATGGGTTCTATCCAGTCTC 58.691 50.000 13.02 0.00 37.75 3.36
782 851 0.682852 GGGTTTTGGGGGTTTAGTGC 59.317 55.000 0.00 0.00 0.00 4.40
804 873 4.815269 CGTTGAATTTGGCCCAAGAATTA 58.185 39.130 0.00 0.00 0.00 1.40
857 926 1.065418 CCCTGCCAAGATTCCTTACGT 60.065 52.381 0.00 0.00 0.00 3.57
862 931 2.937149 GCCAAGATTCCTTACGTTCTCC 59.063 50.000 0.00 0.00 0.00 3.71
863 932 3.369576 GCCAAGATTCCTTACGTTCTCCT 60.370 47.826 0.00 0.00 0.00 3.69
864 933 4.833390 CCAAGATTCCTTACGTTCTCCTT 58.167 43.478 0.00 0.00 0.00 3.36
910 980 0.899717 ATTGTGCTGCCAATTCGGGT 60.900 50.000 9.57 0.00 31.01 5.28
911 981 1.523154 TTGTGCTGCCAATTCGGGTC 61.523 55.000 0.00 0.00 34.06 4.46
915 985 1.079127 CTGCCAATTCGGGTCGAGT 60.079 57.895 0.00 0.00 37.14 4.18
919 989 0.168128 CCAATTCGGGTCGAGTTTGC 59.832 55.000 0.00 0.00 33.83 3.68
927 997 1.002773 GGGTCGAGTTTGCTTCCCTAA 59.997 52.381 0.00 0.00 32.08 2.69
928 998 2.074576 GGTCGAGTTTGCTTCCCTAAC 58.925 52.381 0.00 0.00 0.00 2.34
929 999 2.074576 GTCGAGTTTGCTTCCCTAACC 58.925 52.381 0.00 0.00 30.79 2.85
945 1017 4.201950 CCCTAACCGATGAGCTGAAATTTG 60.202 45.833 0.00 0.00 0.00 2.32
946 1018 3.855689 AACCGATGAGCTGAAATTTGG 57.144 42.857 0.00 0.00 0.00 3.28
965 1037 2.491693 TGGACGAATTTGCAGGGAAATC 59.508 45.455 0.00 0.00 0.00 2.17
974 1046 1.153168 CAGGGAAATCGCGACCCAT 60.153 57.895 28.94 18.06 45.43 4.00
1009 1081 1.542915 CATGTGAAGCCACCCAAGAAG 59.457 52.381 0.00 0.00 42.53 2.85
1105 1177 0.389817 CGAATTGACGCAGAGGACCA 60.390 55.000 0.00 0.00 0.00 4.02
1143 1215 4.660938 GCCCTTCACGGTGGCCTT 62.661 66.667 8.50 0.00 39.30 4.35
1160 1232 2.939198 GCCTTCTTCTCCTTCTTGCTCC 60.939 54.545 0.00 0.00 0.00 4.70
1168 1240 0.608582 CCTTCTTGCTCCTGCTGCTT 60.609 55.000 0.00 0.00 40.48 3.91
1172 1244 3.182590 TTGCTCCTGCTGCTTCGGT 62.183 57.895 0.00 0.00 40.48 4.69
1276 1348 2.360475 GCTCTCACCAACTGGGCC 60.360 66.667 0.00 0.00 42.05 5.80
1525 1597 1.341531 CTCGTGGAGGTGGACATATCC 59.658 57.143 0.00 0.00 46.48 2.59
1528 1600 1.341531 GTGGAGGTGGACATATCCTCG 59.658 57.143 0.00 0.00 46.43 4.63
1741 1813 1.226717 GCGCTACCTCAACCTCTCG 60.227 63.158 0.00 0.00 0.00 4.04
1885 1957 3.067106 CAACTTGACGTACCTGAGCATT 58.933 45.455 0.00 0.00 0.00 3.56
1891 1963 1.220749 GTACCTGAGCATTGCCCGA 59.779 57.895 4.70 0.00 0.00 5.14
1900 1972 0.885196 GCATTGCCCGAAACAACCTA 59.115 50.000 0.00 0.00 0.00 3.08
1971 2043 2.964464 TGCTTGATTGGTCCAACAATGT 59.036 40.909 6.41 0.00 40.92 2.71
2086 2158 1.669211 CCGACCTTCTTCACCGAACTC 60.669 57.143 0.00 0.00 0.00 3.01
2230 2302 2.334653 CCGGCGAGCTTTGCAAAA 59.665 55.556 13.84 0.00 0.00 2.44
2435 2507 1.066114 CAACGAGCTCGACGGAGAAC 61.066 60.000 40.58 0.00 43.27 3.01
2509 2581 0.756903 ACAACTACCTCAACGGCACT 59.243 50.000 0.00 0.00 35.61 4.40
2566 2638 5.113446 AGTCCATTGATCTGAGCTTCAAT 57.887 39.130 5.68 5.68 41.93 2.57
2578 2650 2.893489 GAGCTTCAATTTCCTGGTTGGT 59.107 45.455 0.00 0.00 37.07 3.67
2579 2651 2.893489 AGCTTCAATTTCCTGGTTGGTC 59.107 45.455 0.00 0.00 37.07 4.02
2590 2662 2.668632 GTTGGTCAGATCCCGCCA 59.331 61.111 0.00 0.00 0.00 5.69
2616 2688 1.548357 ATCACTCTGCCGAAGCTGGT 61.548 55.000 0.00 0.00 40.80 4.00
2671 2743 1.544691 GCGATACCGGACATCCTATGT 59.455 52.381 9.46 0.00 40.49 2.29
2686 2758 1.372838 TATGTTCCAATGGCACCGCG 61.373 55.000 0.00 0.00 0.00 6.46
3181 3253 0.530744 CATTCAGCAGCAATGGCAGT 59.469 50.000 0.00 0.00 44.61 4.40
3403 3475 1.679032 GGTAGCCTGCATTTCCTCGTT 60.679 52.381 0.00 0.00 0.00 3.85
3445 3517 2.442272 CTCACCGGTCCGATCCCT 60.442 66.667 14.39 0.00 0.00 4.20
3448 3520 2.762875 ACCGGTCCGATCCCTTCC 60.763 66.667 14.39 0.00 0.00 3.46
3562 3634 4.467107 GGGAGCGGAGGAGGAGGT 62.467 72.222 0.00 0.00 0.00 3.85
4192 4264 3.424105 GGCCTGGCCTTCCTCCAT 61.424 66.667 30.42 0.00 46.69 3.41
4486 4558 1.157870 AGTTCGGCGACAACAACCTG 61.158 55.000 10.16 0.00 0.00 4.00
4537 4609 1.884926 CAAGGGCGGCGAGATCTTC 60.885 63.158 12.98 0.00 0.00 2.87
4723 4795 1.478510 GGCTTCTCGATCAACTCCTCA 59.521 52.381 0.00 0.00 0.00 3.86
4732 4804 4.895889 TCGATCAACTCCTCAACCATAGAT 59.104 41.667 0.00 0.00 0.00 1.98
4880 4965 1.061546 TTCACTGGGGGAGGTTGTAC 58.938 55.000 0.00 0.00 0.00 2.90
4909 4996 7.123383 TGTGGTTCCACTCTCTGTATATAAGA 58.877 38.462 20.48 0.00 37.78 2.10
4943 5030 4.710375 TGAAGAGGGACATGAAGGTAGTAC 59.290 45.833 0.00 0.00 0.00 2.73
4944 5031 4.611564 AGAGGGACATGAAGGTAGTACT 57.388 45.455 0.00 0.00 0.00 2.73
4945 5032 4.538738 AGAGGGACATGAAGGTAGTACTC 58.461 47.826 0.00 0.00 0.00 2.59
4946 5033 3.637694 GAGGGACATGAAGGTAGTACTCC 59.362 52.174 0.00 0.48 0.00 3.85
4947 5034 2.699321 GGGACATGAAGGTAGTACTCCC 59.301 54.545 0.00 0.00 0.00 4.30
4949 5036 3.637694 GGACATGAAGGTAGTACTCCCTC 59.362 52.174 7.57 5.43 0.00 4.30
4950 5037 3.637694 GACATGAAGGTAGTACTCCCTCC 59.362 52.174 7.57 0.00 0.00 4.30
4951 5038 2.431954 TGAAGGTAGTACTCCCTCCG 57.568 55.000 7.57 0.00 0.00 4.63
4952 5039 1.637553 TGAAGGTAGTACTCCCTCCGT 59.362 52.381 7.57 1.44 0.00 4.69
4953 5040 2.042162 TGAAGGTAGTACTCCCTCCGTT 59.958 50.000 7.57 0.00 0.00 4.44
4954 5041 2.433662 AGGTAGTACTCCCTCCGTTC 57.566 55.000 0.11 0.00 0.00 3.95
4955 5042 1.020437 GGTAGTACTCCCTCCGTTCG 58.980 60.000 0.00 0.00 0.00 3.95
4956 5043 1.020437 GTAGTACTCCCTCCGTTCGG 58.980 60.000 0.00 4.74 0.00 4.30
4957 5044 0.911769 TAGTACTCCCTCCGTTCGGA 59.088 55.000 13.34 13.34 0.00 4.55
4958 5045 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
4959 5046 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
4960 5047 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
4961 5048 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
4962 5049 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
4963 5050 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
4964 5051 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
4965 5052 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
4966 5053 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
4967 5054 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
4968 5055 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
4969 5056 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
4970 5057 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
4971 5058 3.495193 CGTTCGGAATTACTTGTCTCGA 58.505 45.455 0.00 0.00 0.00 4.04
4972 5059 3.916172 CGTTCGGAATTACTTGTCTCGAA 59.084 43.478 0.00 0.00 33.66 3.71
4973 5060 4.383649 CGTTCGGAATTACTTGTCTCGAAA 59.616 41.667 0.00 0.00 37.00 3.46
4974 5061 5.107760 CGTTCGGAATTACTTGTCTCGAAAA 60.108 40.000 0.00 0.00 37.00 2.29
4975 5062 6.400727 CGTTCGGAATTACTTGTCTCGAAAAT 60.401 38.462 0.00 0.00 37.00 1.82
4976 5063 6.403333 TCGGAATTACTTGTCTCGAAAATG 57.597 37.500 0.00 0.00 0.00 2.32
4977 5064 6.160684 TCGGAATTACTTGTCTCGAAAATGA 58.839 36.000 0.00 0.00 0.00 2.57
4978 5065 6.647481 TCGGAATTACTTGTCTCGAAAATGAA 59.353 34.615 0.00 0.00 0.00 2.57
4979 5066 7.333423 TCGGAATTACTTGTCTCGAAAATGAAT 59.667 33.333 0.00 0.00 0.00 2.57
4980 5067 7.426456 CGGAATTACTTGTCTCGAAAATGAATG 59.574 37.037 0.00 0.00 0.00 2.67
4981 5068 8.237267 GGAATTACTTGTCTCGAAAATGAATGT 58.763 33.333 0.00 0.00 0.00 2.71
4985 5072 7.672983 ACTTGTCTCGAAAATGAATGTATGT 57.327 32.000 0.00 0.00 0.00 2.29
4986 5073 8.771920 ACTTGTCTCGAAAATGAATGTATGTA 57.228 30.769 0.00 0.00 0.00 2.29
4987 5074 8.873830 ACTTGTCTCGAAAATGAATGTATGTAG 58.126 33.333 0.00 0.00 0.00 2.74
4988 5075 8.996024 TTGTCTCGAAAATGAATGTATGTAGA 57.004 30.769 0.00 0.00 0.00 2.59
4989 5076 8.996024 TGTCTCGAAAATGAATGTATGTAGAA 57.004 30.769 0.00 0.00 0.00 2.10
4990 5077 8.869897 TGTCTCGAAAATGAATGTATGTAGAAC 58.130 33.333 0.00 0.00 0.00 3.01
4991 5078 9.088512 GTCTCGAAAATGAATGTATGTAGAACT 57.911 33.333 0.00 0.00 0.00 3.01
5020 5107 9.664332 AATACATCTAGATACATCCATTTCTGC 57.336 33.333 4.54 0.00 0.00 4.26
5021 5108 6.162079 ACATCTAGATACATCCATTTCTGCG 58.838 40.000 4.54 0.00 0.00 5.18
5022 5109 6.015095 ACATCTAGATACATCCATTTCTGCGA 60.015 38.462 4.54 0.00 0.00 5.10
5023 5110 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
5024 5111 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
5025 5112 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
5026 5113 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
5027 5114 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
5028 5115 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
5029 5116 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
5030 5117 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
5031 5118 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
5032 5119 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
5033 5120 4.394920 TCCATTTCTGCGACAAGTAATTCC 59.605 41.667 0.00 0.00 0.00 3.01
5034 5121 4.155826 CCATTTCTGCGACAAGTAATTCCA 59.844 41.667 0.00 0.00 0.00 3.53
5035 5122 5.335583 CCATTTCTGCGACAAGTAATTCCAA 60.336 40.000 0.00 0.00 0.00 3.53
5036 5123 5.759506 TTTCTGCGACAAGTAATTCCAAA 57.240 34.783 0.00 0.00 0.00 3.28
5037 5124 4.742438 TCTGCGACAAGTAATTCCAAAC 57.258 40.909 0.00 0.00 0.00 2.93
5038 5125 3.185594 TCTGCGACAAGTAATTCCAAACG 59.814 43.478 0.00 0.00 0.00 3.60
5039 5126 2.224549 TGCGACAAGTAATTCCAAACGG 59.775 45.455 0.00 0.00 0.00 4.44
5040 5127 2.481185 GCGACAAGTAATTCCAAACGGA 59.519 45.455 0.00 0.00 0.00 4.69
5041 5128 3.126343 GCGACAAGTAATTCCAAACGGAT 59.874 43.478 0.00 0.00 30.78 4.18
5042 5129 4.647964 CGACAAGTAATTCCAAACGGATG 58.352 43.478 0.00 0.00 30.78 3.51
5043 5130 4.436852 CGACAAGTAATTCCAAACGGATGG 60.437 45.833 2.52 2.52 42.12 3.51
5050 5137 1.568504 TCCAAACGGATGGAGTAGCT 58.431 50.000 7.30 0.00 44.52 3.32
5051 5138 1.906574 TCCAAACGGATGGAGTAGCTT 59.093 47.619 7.30 0.00 44.52 3.74
5052 5139 2.304761 TCCAAACGGATGGAGTAGCTTT 59.695 45.455 7.30 0.00 44.52 3.51
5053 5140 3.081804 CCAAACGGATGGAGTAGCTTTT 58.918 45.455 2.78 0.00 43.54 2.27
5054 5141 4.020039 TCCAAACGGATGGAGTAGCTTTTA 60.020 41.667 7.30 0.00 44.52 1.52
5055 5142 4.881850 CCAAACGGATGGAGTAGCTTTTAT 59.118 41.667 2.78 0.00 43.54 1.40
5056 5143 6.053005 CCAAACGGATGGAGTAGCTTTTATA 58.947 40.000 2.78 0.00 43.54 0.98
5057 5144 6.710744 CCAAACGGATGGAGTAGCTTTTATAT 59.289 38.462 2.78 0.00 43.54 0.86
5058 5145 7.228706 CCAAACGGATGGAGTAGCTTTTATATT 59.771 37.037 2.78 0.00 43.54 1.28
5059 5146 8.621286 CAAACGGATGGAGTAGCTTTTATATTT 58.379 33.333 0.00 0.00 0.00 1.40
5060 5147 7.730364 ACGGATGGAGTAGCTTTTATATTTG 57.270 36.000 0.00 0.00 0.00 2.32
5061 5148 6.204882 ACGGATGGAGTAGCTTTTATATTTGC 59.795 38.462 0.00 0.00 0.00 3.68
5062 5149 6.204688 CGGATGGAGTAGCTTTTATATTTGCA 59.795 38.462 0.00 0.00 0.00 4.08
5063 5150 7.571983 CGGATGGAGTAGCTTTTATATTTGCAG 60.572 40.741 0.00 0.00 0.00 4.41
5064 5151 7.229506 GGATGGAGTAGCTTTTATATTTGCAGT 59.770 37.037 0.00 0.00 0.00 4.40
5065 5152 9.273016 GATGGAGTAGCTTTTATATTTGCAGTA 57.727 33.333 0.00 0.00 0.00 2.74
5066 5153 8.662781 TGGAGTAGCTTTTATATTTGCAGTAG 57.337 34.615 0.00 0.00 0.00 2.57
5146 5233 4.512944 TCTTTTCAGTTGCATGTCTCAGAC 59.487 41.667 0.00 0.00 0.00 3.51
5214 5304 3.684305 TGACTGTGTTGTTCTTGACTGTG 59.316 43.478 0.00 0.00 0.00 3.66
5275 5369 5.467063 GGTGGTAGTGAACAAAAAGAGAGAG 59.533 44.000 0.00 0.00 0.00 3.20
5276 5370 6.281405 GTGGTAGTGAACAAAAAGAGAGAGA 58.719 40.000 0.00 0.00 0.00 3.10
5277 5371 6.422400 GTGGTAGTGAACAAAAAGAGAGAGAG 59.578 42.308 0.00 0.00 0.00 3.20
5279 5373 7.015682 TGGTAGTGAACAAAAAGAGAGAGAGAT 59.984 37.037 0.00 0.00 0.00 2.75
5281 5375 6.463360 AGTGAACAAAAAGAGAGAGAGATCC 58.537 40.000 0.00 0.00 0.00 3.36
5282 5376 6.042552 AGTGAACAAAAAGAGAGAGAGATCCA 59.957 38.462 0.00 0.00 0.00 3.41
5283 5377 6.368516 GTGAACAAAAAGAGAGAGAGATCCAG 59.631 42.308 0.00 0.00 0.00 3.86
5284 5378 6.268617 TGAACAAAAAGAGAGAGAGATCCAGA 59.731 38.462 0.00 0.00 0.00 3.86
5285 5379 6.678568 ACAAAAAGAGAGAGAGATCCAGAA 57.321 37.500 0.00 0.00 0.00 3.02
5286 5380 6.700352 ACAAAAAGAGAGAGAGATCCAGAAG 58.300 40.000 0.00 0.00 0.00 2.85
5287 5381 6.496565 ACAAAAAGAGAGAGAGATCCAGAAGA 59.503 38.462 0.00 0.00 0.00 2.87
5288 5382 7.180766 ACAAAAAGAGAGAGAGATCCAGAAGAT 59.819 37.037 0.00 0.00 38.17 2.40
5289 5383 6.720112 AAAGAGAGAGAGATCCAGAAGATG 57.280 41.667 0.00 0.00 34.42 2.90
5290 5384 5.393068 AGAGAGAGAGATCCAGAAGATGT 57.607 43.478 0.00 0.00 34.42 3.06
5291 5385 5.769835 AGAGAGAGAGATCCAGAAGATGTT 58.230 41.667 0.00 0.00 34.42 2.71
5292 5386 6.910191 AGAGAGAGAGATCCAGAAGATGTTA 58.090 40.000 0.00 0.00 34.42 2.41
5293 5387 6.772716 AGAGAGAGAGATCCAGAAGATGTTAC 59.227 42.308 0.00 0.00 34.42 2.50
5294 5388 5.530915 AGAGAGAGATCCAGAAGATGTTACG 59.469 44.000 0.00 0.00 34.42 3.18
5295 5389 5.197451 AGAGAGATCCAGAAGATGTTACGT 58.803 41.667 0.00 0.00 34.42 3.57
5296 5390 5.298276 AGAGAGATCCAGAAGATGTTACGTC 59.702 44.000 0.00 0.00 34.42 4.34
5297 5391 4.339814 AGAGATCCAGAAGATGTTACGTCC 59.660 45.833 0.36 0.00 34.42 4.79
5468 5563 0.471617 CAGCCCCTAGATCTTGTGGG 59.528 60.000 19.38 19.38 39.37 4.61
5502 5602 5.649395 CACCTGAATCATGGATGTACTTTGT 59.351 40.000 5.89 0.00 0.00 2.83
5553 5653 2.320587 GCTGTGGTGACGAAGCTGG 61.321 63.158 0.00 0.00 38.13 4.85
5573 5673 3.258123 TGGGCAACAGAAATTAAAGGAGC 59.742 43.478 0.00 0.00 39.74 4.70
5584 5684 7.001073 AGAAATTAAAGGAGCTGTTCAGTTCT 58.999 34.615 14.28 0.00 0.00 3.01
5592 5692 1.604185 GCTGTTCAGTTCTGCGACTCT 60.604 52.381 1.78 0.00 0.00 3.24
5593 5693 2.323959 CTGTTCAGTTCTGCGACTCTC 58.676 52.381 0.00 0.00 0.00 3.20
5594 5694 1.957177 TGTTCAGTTCTGCGACTCTCT 59.043 47.619 0.00 0.00 0.00 3.10
5595 5695 2.030717 TGTTCAGTTCTGCGACTCTCTC 60.031 50.000 0.00 0.00 0.00 3.20
5596 5696 2.192664 TCAGTTCTGCGACTCTCTCT 57.807 50.000 0.00 0.00 0.00 3.10
5597 5697 1.809547 TCAGTTCTGCGACTCTCTCTG 59.190 52.381 0.00 0.00 0.00 3.35
5598 5698 1.135431 CAGTTCTGCGACTCTCTCTGG 60.135 57.143 0.00 0.00 0.00 3.86
5599 5699 0.885196 GTTCTGCGACTCTCTCTGGT 59.115 55.000 0.00 0.00 0.00 4.00
5600 5700 2.085320 GTTCTGCGACTCTCTCTGGTA 58.915 52.381 0.00 0.00 0.00 3.25
5606 5717 2.738000 GCGACTCTCTCTGGTACTCGTA 60.738 54.545 0.00 0.00 0.00 3.43
5638 5749 2.039624 AGGGCCTGAGACGGATGT 59.960 61.111 4.50 0.00 0.00 3.06
5640 5751 0.757188 AGGGCCTGAGACGGATGTAG 60.757 60.000 4.50 0.00 0.00 2.74
5641 5752 1.068250 GGCCTGAGACGGATGTAGC 59.932 63.158 0.00 0.00 0.00 3.58
5642 5753 1.676678 GGCCTGAGACGGATGTAGCA 61.677 60.000 0.00 0.00 0.00 3.49
5643 5754 0.249238 GCCTGAGACGGATGTAGCAG 60.249 60.000 0.00 0.00 32.20 4.24
5644 5755 1.393603 CCTGAGACGGATGTAGCAGA 58.606 55.000 0.00 0.00 33.47 4.26
5646 5757 1.745653 CTGAGACGGATGTAGCAGACA 59.254 52.381 0.00 0.00 43.97 3.41
5706 5833 7.399765 CAGGAGGAGATAAGGTCTGAATCATAT 59.600 40.741 0.00 0.00 37.29 1.78
5707 5834 7.399765 AGGAGGAGATAAGGTCTGAATCATATG 59.600 40.741 0.00 0.00 37.29 1.78
5708 5835 7.364585 GGAGGAGATAAGGTCTGAATCATATGG 60.365 44.444 2.13 0.00 37.29 2.74
5709 5836 6.070309 AGGAGATAAGGTCTGAATCATATGGC 60.070 42.308 2.13 0.00 37.29 4.40
5710 5837 6.296087 GGAGATAAGGTCTGAATCATATGGCA 60.296 42.308 2.13 0.00 37.29 4.92
5711 5838 7.083062 AGATAAGGTCTGAATCATATGGCAA 57.917 36.000 2.13 0.00 35.31 4.52
5712 5839 7.166851 AGATAAGGTCTGAATCATATGGCAAG 58.833 38.462 2.13 0.00 35.31 4.01
5713 5840 5.378230 AAGGTCTGAATCATATGGCAAGA 57.622 39.130 2.13 0.00 0.00 3.02
5714 5841 4.970711 AGGTCTGAATCATATGGCAAGAG 58.029 43.478 2.13 0.00 0.00 2.85
5715 5842 4.070716 GGTCTGAATCATATGGCAAGAGG 58.929 47.826 2.13 0.00 0.00 3.69
5716 5843 4.070716 GTCTGAATCATATGGCAAGAGGG 58.929 47.826 2.13 0.00 0.00 4.30
5717 5844 2.818432 CTGAATCATATGGCAAGAGGGC 59.182 50.000 2.13 0.00 43.73 5.19
5725 5852 3.478540 GGCAAGAGGGCGAAAGTAT 57.521 52.632 0.00 0.00 33.57 2.12
5726 5853 1.751437 GGCAAGAGGGCGAAAGTATT 58.249 50.000 0.00 0.00 33.57 1.89
5727 5854 2.092323 GGCAAGAGGGCGAAAGTATTT 58.908 47.619 0.00 0.00 43.98 1.40
5748 5875 9.997482 GTATTTCACAAACTAAACTGTTTCTGA 57.003 29.630 9.38 0.38 37.98 3.27
5751 5878 8.964420 TTCACAAACTAAACTGTTTCTGAAAG 57.036 30.769 9.38 3.87 39.77 2.62
5752 5879 8.106247 TCACAAACTAAACTGTTTCTGAAAGT 57.894 30.769 9.38 4.52 37.98 2.66
5753 5880 9.221933 TCACAAACTAAACTGTTTCTGAAAGTA 57.778 29.630 9.38 0.00 37.98 2.24
5764 5891 9.783256 ACTGTTTCTGAAAGTATTTTACACAAC 57.217 29.630 2.48 0.00 39.27 3.32
5766 5893 9.781834 TGTTTCTGAAAGTATTTTACACAACTG 57.218 29.630 2.48 0.00 39.27 3.16
5767 5894 9.997482 GTTTCTGAAAGTATTTTACACAACTGA 57.003 29.630 2.48 0.00 39.27 3.41
5768 5895 9.997482 TTTCTGAAAGTATTTTACACAACTGAC 57.003 29.630 0.00 0.00 39.27 3.51
5769 5896 8.958119 TCTGAAAGTATTTTACACAACTGACT 57.042 30.769 0.00 0.00 39.27 3.41
5770 5897 9.042008 TCTGAAAGTATTTTACACAACTGACTC 57.958 33.333 0.00 0.00 39.27 3.36
5771 5898 8.958119 TGAAAGTATTTTACACAACTGACTCT 57.042 30.769 0.00 0.00 39.27 3.24
5772 5899 9.391006 TGAAAGTATTTTACACAACTGACTCTT 57.609 29.630 0.00 0.00 39.27 2.85
5776 5903 9.174166 AGTATTTTACACAACTGACTCTTTTGT 57.826 29.630 0.00 0.00 33.69 2.83
5779 5906 3.763097 CACAACTGACTCTTTTGTGCA 57.237 42.857 9.21 0.00 42.55 4.57
5780 5907 3.688272 CACAACTGACTCTTTTGTGCAG 58.312 45.455 9.21 0.00 42.55 4.41
5781 5908 2.098117 ACAACTGACTCTTTTGTGCAGC 59.902 45.455 0.00 0.00 32.21 5.25
5782 5909 0.940126 ACTGACTCTTTTGTGCAGCG 59.060 50.000 0.00 0.00 0.00 5.18
5783 5910 0.385223 CTGACTCTTTTGTGCAGCGC 60.385 55.000 0.00 0.00 0.00 5.92
5784 5911 1.094650 TGACTCTTTTGTGCAGCGCA 61.095 50.000 11.47 3.96 35.60 6.09
5785 5912 0.385223 GACTCTTTTGTGCAGCGCAG 60.385 55.000 11.47 1.31 40.08 5.18
5810 5937 2.280389 CTGTCGGGCGCTGCATAT 60.280 61.111 7.64 0.00 0.00 1.78
5811 5938 1.006220 CTGTCGGGCGCTGCATATA 60.006 57.895 7.64 0.00 0.00 0.86
5812 5939 0.599991 CTGTCGGGCGCTGCATATAA 60.600 55.000 7.64 0.00 0.00 0.98
5813 5940 0.179070 TGTCGGGCGCTGCATATAAA 60.179 50.000 7.64 0.00 0.00 1.40
5814 5941 0.941542 GTCGGGCGCTGCATATAAAA 59.058 50.000 7.64 0.00 0.00 1.52
5815 5942 1.069906 GTCGGGCGCTGCATATAAAAG 60.070 52.381 7.64 0.00 0.00 2.27
5816 5943 0.238289 CGGGCGCTGCATATAAAAGG 59.762 55.000 7.64 0.00 0.00 3.11
5817 5944 1.318576 GGGCGCTGCATATAAAAGGT 58.681 50.000 7.64 0.00 0.00 3.50
5818 5945 1.266989 GGGCGCTGCATATAAAAGGTC 59.733 52.381 7.64 0.00 0.00 3.85
5819 5946 1.946768 GGCGCTGCATATAAAAGGTCA 59.053 47.619 7.64 0.00 0.00 4.02
5820 5947 2.031682 GGCGCTGCATATAAAAGGTCAG 60.032 50.000 7.64 0.00 0.00 3.51
5821 5948 2.603173 GCGCTGCATATAAAAGGTCAGC 60.603 50.000 0.00 0.00 42.30 4.26
5822 5949 2.874701 CGCTGCATATAAAAGGTCAGCT 59.125 45.455 9.82 0.00 43.21 4.24
5823 5950 3.303593 CGCTGCATATAAAAGGTCAGCTG 60.304 47.826 7.63 7.63 43.21 4.24
5824 5951 3.004106 GCTGCATATAAAAGGTCAGCTGG 59.996 47.826 15.13 0.00 42.41 4.85
5825 5952 3.554934 TGCATATAAAAGGTCAGCTGGG 58.445 45.455 15.13 0.00 0.00 4.45
5826 5953 3.053693 TGCATATAAAAGGTCAGCTGGGT 60.054 43.478 15.13 0.00 0.00 4.51
5827 5954 3.316308 GCATATAAAAGGTCAGCTGGGTG 59.684 47.826 15.13 0.00 0.00 4.61
5828 5955 4.780815 CATATAAAAGGTCAGCTGGGTGA 58.219 43.478 15.13 0.00 0.00 4.02
5829 5956 3.806949 ATAAAAGGTCAGCTGGGTGAA 57.193 42.857 15.13 0.00 0.00 3.18
5830 5957 2.452600 AAAAGGTCAGCTGGGTGAAA 57.547 45.000 15.13 0.00 0.00 2.69
5831 5958 2.683211 AAAGGTCAGCTGGGTGAAAT 57.317 45.000 15.13 0.00 0.00 2.17
5832 5959 3.806949 AAAGGTCAGCTGGGTGAAATA 57.193 42.857 15.13 0.00 0.00 1.40
5833 5960 2.789409 AGGTCAGCTGGGTGAAATAC 57.211 50.000 15.13 1.25 0.00 1.89
5834 5961 2.269940 AGGTCAGCTGGGTGAAATACT 58.730 47.619 15.13 0.00 0.00 2.12
5835 5962 2.237392 AGGTCAGCTGGGTGAAATACTC 59.763 50.000 15.13 0.00 0.00 2.59
5836 5963 2.237392 GGTCAGCTGGGTGAAATACTCT 59.763 50.000 15.13 0.00 0.00 3.24
5837 5964 3.307762 GGTCAGCTGGGTGAAATACTCTT 60.308 47.826 15.13 0.00 0.00 2.85
5838 5965 4.081087 GGTCAGCTGGGTGAAATACTCTTA 60.081 45.833 15.13 0.00 0.00 2.10
5839 5966 5.488341 GTCAGCTGGGTGAAATACTCTTAA 58.512 41.667 15.13 0.00 0.00 1.85
5840 5967 5.938125 GTCAGCTGGGTGAAATACTCTTAAA 59.062 40.000 15.13 0.00 0.00 1.52
5841 5968 6.430000 GTCAGCTGGGTGAAATACTCTTAAAA 59.570 38.462 15.13 0.00 0.00 1.52
5842 5969 7.001674 TCAGCTGGGTGAAATACTCTTAAAAA 58.998 34.615 15.13 0.00 0.00 1.94
5843 5970 7.040686 TCAGCTGGGTGAAATACTCTTAAAAAC 60.041 37.037 15.13 0.00 0.00 2.43
5844 5971 6.775629 AGCTGGGTGAAATACTCTTAAAAACA 59.224 34.615 0.00 0.00 0.00 2.83
5845 5972 7.286775 AGCTGGGTGAAATACTCTTAAAAACAA 59.713 33.333 0.00 0.00 0.00 2.83
5846 5973 8.088365 GCTGGGTGAAATACTCTTAAAAACAAT 58.912 33.333 0.00 0.00 0.00 2.71
5847 5974 9.626045 CTGGGTGAAATACTCTTAAAAACAATC 57.374 33.333 0.00 0.00 0.00 2.67
5848 5975 9.362151 TGGGTGAAATACTCTTAAAAACAATCT 57.638 29.630 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 2.094100 TGGGTGCTCCAAAATCCAAA 57.906 45.000 7.20 0.00 43.84 3.28
75 76 3.858886 TGGGTGCTCCAAAATCCAA 57.141 47.368 7.20 0.00 43.84 3.53
84 85 0.467290 TGAGTTGGTTTGGGTGCTCC 60.467 55.000 0.00 0.00 0.00 4.70
99 100 5.885449 TGGAAAATTGGAAATGGTTGAGT 57.115 34.783 0.00 0.00 0.00 3.41
111 112 0.832626 GGGGCTGGATGGAAAATTGG 59.167 55.000 0.00 0.00 0.00 3.16
112 113 1.758862 GAGGGGCTGGATGGAAAATTG 59.241 52.381 0.00 0.00 0.00 2.32
113 114 1.686115 CGAGGGGCTGGATGGAAAATT 60.686 52.381 0.00 0.00 0.00 1.82
114 115 0.106519 CGAGGGGCTGGATGGAAAAT 60.107 55.000 0.00 0.00 0.00 1.82
115 116 1.302949 CGAGGGGCTGGATGGAAAA 59.697 57.895 0.00 0.00 0.00 2.29
116 117 2.679342 CCGAGGGGCTGGATGGAAA 61.679 63.158 0.00 0.00 0.00 3.13
117 118 3.089874 CCGAGGGGCTGGATGGAA 61.090 66.667 0.00 0.00 0.00 3.53
137 138 2.433239 TCCAAGGGTAATTACTCGCTCC 59.567 50.000 15.05 7.53 0.00 4.70
139 140 4.259356 GTTTCCAAGGGTAATTACTCGCT 58.741 43.478 15.05 1.67 0.00 4.93
186 187 0.440758 CGCCGAGTTGTTTATTCGCA 59.559 50.000 0.00 0.00 33.25 5.10
312 325 3.036959 GGGAGGGAGGGAGGGAGA 61.037 72.222 0.00 0.00 0.00 3.71
336 349 7.921745 GCCTACACTTGACTATTTAAGTAGGAG 59.078 40.741 16.91 6.80 46.37 3.69
337 350 7.147776 GGCCTACACTTGACTATTTAAGTAGGA 60.148 40.741 16.91 0.00 46.37 2.94
338 351 6.985059 GGCCTACACTTGACTATTTAAGTAGG 59.015 42.308 9.54 10.16 46.26 3.18
339 352 7.707035 CAGGCCTACACTTGACTATTTAAGTAG 59.293 40.741 3.98 3.60 39.07 2.57
340 353 7.179694 ACAGGCCTACACTTGACTATTTAAGTA 59.820 37.037 3.98 0.00 39.07 2.24
341 354 6.013639 ACAGGCCTACACTTGACTATTTAAGT 60.014 38.462 3.98 0.00 42.80 2.24
411 430 2.188818 AGGGAAGGGAAGAGAGATGG 57.811 55.000 0.00 0.00 0.00 3.51
416 435 0.800239 AGGGAAGGGAAGGGAAGAGA 59.200 55.000 0.00 0.00 0.00 3.10
417 436 1.283321 CAAGGGAAGGGAAGGGAAGAG 59.717 57.143 0.00 0.00 0.00 2.85
418 437 1.372501 CAAGGGAAGGGAAGGGAAGA 58.627 55.000 0.00 0.00 0.00 2.87
419 438 1.004862 GACAAGGGAAGGGAAGGGAAG 59.995 57.143 0.00 0.00 0.00 3.46
420 439 1.073098 GACAAGGGAAGGGAAGGGAA 58.927 55.000 0.00 0.00 0.00 3.97
450 469 0.179111 TCTAGGTGCCGCAAGAATCG 60.179 55.000 0.00 0.00 43.02 3.34
451 470 2.246719 ATCTAGGTGCCGCAAGAATC 57.753 50.000 0.00 0.00 43.02 2.52
487 529 1.068474 AGAACGAAATGGACGAAGCG 58.932 50.000 0.00 0.00 34.70 4.68
493 535 4.003648 ACCTCATCAAGAACGAAATGGAC 58.996 43.478 0.00 0.00 0.00 4.02
502 544 4.516698 TGAAGCTGAAACCTCATCAAGAAC 59.483 41.667 0.00 0.00 0.00 3.01
529 571 1.740332 GCGAGGAGGAGAAGTAGGGC 61.740 65.000 0.00 0.00 0.00 5.19
562 604 1.971357 GAGCCCGGAATGATTAGGAGA 59.029 52.381 0.73 0.00 0.00 3.71
587 632 9.346725 GAAACCAAGAAGCAACATAATAAAGAG 57.653 33.333 0.00 0.00 0.00 2.85
588 633 8.020819 CGAAACCAAGAAGCAACATAATAAAGA 58.979 33.333 0.00 0.00 0.00 2.52
589 634 7.807907 ACGAAACCAAGAAGCAACATAATAAAG 59.192 33.333 0.00 0.00 0.00 1.85
630 676 2.356194 GCCAACAAAAGCCCAGCG 60.356 61.111 0.00 0.00 0.00 5.18
643 689 2.485124 CCAATTGCAACCTTCAAGCCAA 60.485 45.455 0.00 0.00 0.00 4.52
647 693 1.345415 AGCCCAATTGCAACCTTCAAG 59.655 47.619 0.00 0.00 0.00 3.02
674 743 3.319755 CAAATCACAAACATGTCCCAGC 58.680 45.455 0.00 0.00 0.00 4.85
703 772 1.896220 TGCAAGAAACGAGCTCCAAT 58.104 45.000 8.47 0.00 0.00 3.16
712 781 2.969443 ACGAATCCTTGCAAGAAACG 57.031 45.000 28.05 24.69 0.00 3.60
747 816 2.240493 ACCCAAAACGTCTGAGACTG 57.760 50.000 11.26 6.94 0.00 3.51
748 817 3.277142 AAACCCAAAACGTCTGAGACT 57.723 42.857 11.26 0.00 0.00 3.24
749 818 3.488553 CCAAAACCCAAAACGTCTGAGAC 60.489 47.826 1.65 1.65 0.00 3.36
752 821 1.751924 CCCAAAACCCAAAACGTCTGA 59.248 47.619 0.00 0.00 0.00 3.27
753 822 1.202475 CCCCAAAACCCAAAACGTCTG 60.202 52.381 0.00 0.00 0.00 3.51
782 851 2.810439 TTCTTGGGCCAAATTCAACG 57.190 45.000 21.28 6.75 0.00 4.10
896 966 2.435938 TCGACCCGAATTGGCAGC 60.436 61.111 0.00 0.00 35.87 5.25
898 968 0.250553 AAACTCGACCCGAATTGGCA 60.251 50.000 0.00 0.00 34.74 4.92
900 970 0.168128 GCAAACTCGACCCGAATTGG 59.832 55.000 12.93 0.22 35.10 3.16
902 972 1.804748 GAAGCAAACTCGACCCGAATT 59.195 47.619 0.00 0.00 34.74 2.17
904 974 0.601841 GGAAGCAAACTCGACCCGAA 60.602 55.000 0.00 0.00 34.74 4.30
905 975 1.005394 GGAAGCAAACTCGACCCGA 60.005 57.895 0.00 0.00 0.00 5.14
906 976 2.033194 GGGAAGCAAACTCGACCCG 61.033 63.158 0.00 0.00 0.00 5.28
910 980 1.337447 CGGTTAGGGAAGCAAACTCGA 60.337 52.381 0.00 0.00 32.32 4.04
911 981 1.076332 CGGTTAGGGAAGCAAACTCG 58.924 55.000 0.00 0.00 32.32 4.18
915 985 2.939640 GCTCATCGGTTAGGGAAGCAAA 60.940 50.000 0.00 0.00 32.32 3.68
919 989 1.757118 TCAGCTCATCGGTTAGGGAAG 59.243 52.381 0.00 0.00 0.00 3.46
927 997 2.749621 GTCCAAATTTCAGCTCATCGGT 59.250 45.455 0.00 0.00 0.00 4.69
928 998 2.223112 CGTCCAAATTTCAGCTCATCGG 60.223 50.000 0.00 0.00 0.00 4.18
929 999 2.672874 TCGTCCAAATTTCAGCTCATCG 59.327 45.455 0.00 0.00 0.00 3.84
945 1017 2.477863 CGATTTCCCTGCAAATTCGTCC 60.478 50.000 5.98 0.00 0.00 4.79
946 1018 2.785679 CGATTTCCCTGCAAATTCGTC 58.214 47.619 5.98 0.00 0.00 4.20
965 1037 0.387367 CGGAGAAGATATGGGTCGCG 60.387 60.000 0.00 0.00 0.00 5.87
974 1046 3.275999 TCACATGTCGACGGAGAAGATA 58.724 45.455 11.62 0.00 0.00 1.98
1039 1111 2.238395 AGGAGAAAACAGGAGATGCCTC 59.762 50.000 0.00 0.00 46.97 4.70
1050 1122 2.174639 TGCAAGGAAGGAGGAGAAAACA 59.825 45.455 0.00 0.00 0.00 2.83
1127 1199 2.359975 GAAGGCCACCGTGAAGGG 60.360 66.667 5.01 0.00 46.96 3.95
1129 1201 0.035458 AGAAGAAGGCCACCGTGAAG 59.965 55.000 5.01 0.00 0.00 3.02
1130 1202 0.034896 GAGAAGAAGGCCACCGTGAA 59.965 55.000 5.01 0.00 0.00 3.18
1131 1203 1.671742 GAGAAGAAGGCCACCGTGA 59.328 57.895 5.01 0.00 0.00 4.35
1132 1204 1.376037 GGAGAAGAAGGCCACCGTG 60.376 63.158 5.01 0.00 0.00 4.94
1133 1205 1.128188 AAGGAGAAGAAGGCCACCGT 61.128 55.000 5.01 0.00 0.00 4.83
1134 1206 0.391793 GAAGGAGAAGAAGGCCACCG 60.392 60.000 5.01 0.00 0.00 4.94
1135 1207 0.988063 AGAAGGAGAAGAAGGCCACC 59.012 55.000 5.01 0.00 0.00 4.61
1136 1208 2.431454 CAAGAAGGAGAAGAAGGCCAC 58.569 52.381 5.01 0.00 0.00 5.01
1137 1209 1.271597 GCAAGAAGGAGAAGAAGGCCA 60.272 52.381 5.01 0.00 0.00 5.36
1138 1210 1.004161 AGCAAGAAGGAGAAGAAGGCC 59.996 52.381 0.00 0.00 0.00 5.19
1139 1211 2.355197 GAGCAAGAAGGAGAAGAAGGC 58.645 52.381 0.00 0.00 0.00 4.35
1140 1212 2.571202 AGGAGCAAGAAGGAGAAGAAGG 59.429 50.000 0.00 0.00 0.00 3.46
1141 1213 3.598299 CAGGAGCAAGAAGGAGAAGAAG 58.402 50.000 0.00 0.00 0.00 2.85
1142 1214 2.289945 GCAGGAGCAAGAAGGAGAAGAA 60.290 50.000 0.00 0.00 41.58 2.52
1143 1215 1.277557 GCAGGAGCAAGAAGGAGAAGA 59.722 52.381 0.00 0.00 41.58 2.87
1160 1232 2.559840 CAGCAACCGAAGCAGCAG 59.440 61.111 0.00 0.00 0.00 4.24
1525 1597 2.380410 CCCGTTGAAGGCGTTCGAG 61.380 63.158 13.98 7.76 35.17 4.04
1528 1600 2.664436 CGTCCCGTTGAAGGCGTTC 61.664 63.158 12.18 12.18 0.00 3.95
1587 1659 0.966920 GTTCCTCGACAGGTTCAGGA 59.033 55.000 0.00 0.00 41.28 3.86
1666 1738 2.288025 GGCGTCCTCCAGGTGGTTA 61.288 63.158 7.46 0.00 36.34 2.85
1741 1813 2.359975 CCCGTGAAGAGGTTGGCC 60.360 66.667 0.00 0.00 0.00 5.36
1780 1852 3.349006 GTGGTGACCACGCTGCAG 61.349 66.667 20.19 10.11 44.95 4.41
1868 1940 1.438651 GCAATGCTCAGGTACGTCAA 58.561 50.000 0.00 0.00 0.00 3.18
1885 1957 0.885596 CGGTTAGGTTGTTTCGGGCA 60.886 55.000 0.00 0.00 0.00 5.36
1900 1972 0.836400 ACCCAGAGACATCACCGGTT 60.836 55.000 2.97 0.00 0.00 4.44
1906 1978 3.056821 CGAAGTTGTACCCAGAGACATCA 60.057 47.826 0.00 0.00 0.00 3.07
1971 2043 0.107703 CAATCCGGTGCTGCTTAGGA 60.108 55.000 0.00 11.53 35.24 2.94
2024 2096 1.819288 GTTCCCTGACATGTCGAGAGA 59.181 52.381 20.54 12.19 38.16 3.10
2026 2098 1.627864 TGTTCCCTGACATGTCGAGA 58.372 50.000 20.54 13.71 0.00 4.04
2230 2302 2.364842 ACCTCGAGGGAGCTGCAT 60.365 61.111 34.04 8.85 39.06 3.96
2275 2347 1.228245 GCTGGCCACAAAGTCTCCA 60.228 57.895 0.00 0.00 0.00 3.86
2278 2350 1.598130 GACGCTGGCCACAAAGTCT 60.598 57.895 0.00 0.00 33.17 3.24
2332 2404 1.269174 CCGGTGATGTTGTTGAATGCA 59.731 47.619 0.00 0.00 0.00 3.96
2435 2507 2.821366 GCACAGGTCCGGCATGAG 60.821 66.667 15.63 9.79 32.48 2.90
2566 2638 1.354368 GGGATCTGACCAACCAGGAAA 59.646 52.381 0.00 0.00 41.22 3.13
2578 2650 1.860641 TTACTTCTGGCGGGATCTGA 58.139 50.000 0.00 0.00 0.00 3.27
2579 2651 2.103094 TGATTACTTCTGGCGGGATCTG 59.897 50.000 0.00 0.00 0.00 2.90
2590 2662 3.677424 GCTTCGGCAGAGTGATTACTTCT 60.677 47.826 0.00 0.00 41.33 2.85
2616 2688 1.522092 GCCCACATGACCAGATCGA 59.478 57.895 0.00 0.00 0.00 3.59
2686 2758 0.391130 TTATCACCAGTGTCGCCAGC 60.391 55.000 0.00 0.00 0.00 4.85
2694 2766 4.997395 AGTTGTTGTAGCTTATCACCAGTG 59.003 41.667 0.00 0.00 0.00 3.66
2695 2767 5.228945 AGTTGTTGTAGCTTATCACCAGT 57.771 39.130 0.00 0.00 0.00 4.00
3403 3475 1.026584 TGTTGGAGACGTCGAAGTCA 58.973 50.000 28.91 10.33 43.24 3.41
3448 3520 4.767255 GTGGTGAGCTGGCCGGAG 62.767 72.222 18.31 0.00 0.00 4.63
3553 3625 1.842562 CCATCATGTGAACCTCCTCCT 59.157 52.381 0.00 0.00 0.00 3.69
3560 3632 1.133976 CCTCCTCCCATCATGTGAACC 60.134 57.143 0.00 0.00 0.00 3.62
3562 3634 2.268796 TCCTCCTCCCATCATGTGAA 57.731 50.000 0.00 0.00 0.00 3.18
3874 3946 1.338655 GCCTTGTAAACCTCGCCAAAA 59.661 47.619 0.00 0.00 0.00 2.44
4105 4177 1.234615 CCATGGCCTTGTCGTCGTTT 61.235 55.000 16.81 0.00 0.00 3.60
4192 4264 2.934932 TGGGGGATGCAGCTGTGA 60.935 61.111 16.64 2.45 0.00 3.58
4396 4468 0.663688 CATAGCTGTAGACGTCGCCT 59.336 55.000 10.46 5.89 0.00 5.52
4486 4558 4.329545 TGCTTCACCCAGCCGACC 62.330 66.667 0.00 0.00 39.25 4.79
4543 4615 2.022129 CTTGGTGTCGGTCAGCGTC 61.022 63.158 0.00 0.00 46.24 5.19
4600 4672 1.596934 GTCATCCAGGCACTCGGAA 59.403 57.895 0.00 0.00 38.65 4.30
4657 4729 0.886563 GCTGCAGCTCCTTGAACATT 59.113 50.000 31.33 0.00 38.21 2.71
4723 4795 3.643320 TCTCTGCCGATTCATCTATGGTT 59.357 43.478 0.00 0.00 0.00 3.67
4732 4804 3.126073 CGATGATTTCTCTGCCGATTCA 58.874 45.455 0.00 0.00 0.00 2.57
4909 4996 4.168101 TGTCCCTCTTCATACTTTGGACT 58.832 43.478 0.00 0.00 41.04 3.85
4943 5030 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
4944 5031 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
4945 5032 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
4946 5033 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
4947 5034 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
4949 5036 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
4950 5037 3.495193 TCGAGACAAGTAATTCCGAACG 58.505 45.455 0.00 0.00 0.00 3.95
4951 5038 5.834239 TTTCGAGACAAGTAATTCCGAAC 57.166 39.130 0.00 0.00 34.86 3.95
4952 5039 6.647481 TCATTTTCGAGACAAGTAATTCCGAA 59.353 34.615 0.00 0.00 33.57 4.30
4953 5040 6.160684 TCATTTTCGAGACAAGTAATTCCGA 58.839 36.000 0.00 0.00 0.00 4.55
4954 5041 6.403333 TCATTTTCGAGACAAGTAATTCCG 57.597 37.500 0.00 0.00 0.00 4.30
4955 5042 8.237267 ACATTCATTTTCGAGACAAGTAATTCC 58.763 33.333 0.00 0.00 0.00 3.01
4959 5046 9.214957 ACATACATTCATTTTCGAGACAAGTAA 57.785 29.630 0.00 0.00 0.00 2.24
4960 5047 8.771920 ACATACATTCATTTTCGAGACAAGTA 57.228 30.769 0.00 0.00 0.00 2.24
4961 5048 7.672983 ACATACATTCATTTTCGAGACAAGT 57.327 32.000 0.00 0.00 0.00 3.16
4962 5049 9.087424 TCTACATACATTCATTTTCGAGACAAG 57.913 33.333 0.00 0.00 0.00 3.16
4963 5050 8.996024 TCTACATACATTCATTTTCGAGACAA 57.004 30.769 0.00 0.00 0.00 3.18
4964 5051 8.869897 GTTCTACATACATTCATTTTCGAGACA 58.130 33.333 0.00 0.00 0.00 3.41
4965 5052 9.088512 AGTTCTACATACATTCATTTTCGAGAC 57.911 33.333 0.00 0.00 0.00 3.36
4994 5081 9.664332 GCAGAAATGGATGTATCTAGATGTATT 57.336 33.333 15.79 4.32 0.00 1.89
4995 5082 7.978414 CGCAGAAATGGATGTATCTAGATGTAT 59.022 37.037 15.79 9.11 0.00 2.29
4996 5083 7.176690 TCGCAGAAATGGATGTATCTAGATGTA 59.823 37.037 15.79 4.44 0.00 2.29
4997 5084 6.015095 TCGCAGAAATGGATGTATCTAGATGT 60.015 38.462 15.79 1.25 0.00 3.06
4998 5085 6.309980 GTCGCAGAAATGGATGTATCTAGATG 59.690 42.308 15.79 0.00 39.69 2.90
4999 5086 6.015095 TGTCGCAGAAATGGATGTATCTAGAT 60.015 38.462 10.73 10.73 39.69 1.98
5000 5087 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
5001 5088 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
5002 5089 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
5003 5090 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
5004 5091 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
5005 5092 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
5006 5093 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
5007 5094 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
5008 5095 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
5009 5096 5.066505 GGAATTACTTGTCGCAGAAATGGAT 59.933 40.000 0.00 0.00 39.69 3.41
5010 5097 4.394920 GGAATTACTTGTCGCAGAAATGGA 59.605 41.667 0.00 0.00 39.69 3.41
5011 5098 4.155826 TGGAATTACTTGTCGCAGAAATGG 59.844 41.667 0.00 0.00 39.69 3.16
5012 5099 5.295431 TGGAATTACTTGTCGCAGAAATG 57.705 39.130 0.00 0.00 39.69 2.32
5013 5100 5.957842 TTGGAATTACTTGTCGCAGAAAT 57.042 34.783 0.00 0.00 39.69 2.17
5014 5101 5.516090 GTTTGGAATTACTTGTCGCAGAAA 58.484 37.500 0.00 0.00 39.69 2.52
5015 5102 4.319190 CGTTTGGAATTACTTGTCGCAGAA 60.319 41.667 0.00 0.00 39.69 3.02
5016 5103 3.185594 CGTTTGGAATTACTTGTCGCAGA 59.814 43.478 0.00 0.00 0.00 4.26
5017 5104 3.479006 CGTTTGGAATTACTTGTCGCAG 58.521 45.455 0.00 0.00 0.00 5.18
5018 5105 2.224549 CCGTTTGGAATTACTTGTCGCA 59.775 45.455 0.00 0.00 37.49 5.10
5019 5106 2.481185 TCCGTTTGGAATTACTTGTCGC 59.519 45.455 0.00 0.00 42.85 5.19
5032 5119 2.403252 AAGCTACTCCATCCGTTTGG 57.597 50.000 0.00 0.00 38.18 3.28
5033 5120 7.730364 ATATAAAAGCTACTCCATCCGTTTG 57.270 36.000 0.00 0.00 0.00 2.93
5034 5121 8.621286 CAAATATAAAAGCTACTCCATCCGTTT 58.379 33.333 0.00 0.00 0.00 3.60
5035 5122 7.255139 GCAAATATAAAAGCTACTCCATCCGTT 60.255 37.037 0.00 0.00 0.00 4.44
5036 5123 6.204882 GCAAATATAAAAGCTACTCCATCCGT 59.795 38.462 0.00 0.00 0.00 4.69
5037 5124 6.204688 TGCAAATATAAAAGCTACTCCATCCG 59.795 38.462 0.00 0.00 0.00 4.18
5038 5125 7.229506 ACTGCAAATATAAAAGCTACTCCATCC 59.770 37.037 0.00 0.00 0.00 3.51
5039 5126 8.159344 ACTGCAAATATAAAAGCTACTCCATC 57.841 34.615 0.00 0.00 0.00 3.51
5040 5127 9.277783 CTACTGCAAATATAAAAGCTACTCCAT 57.722 33.333 0.00 0.00 0.00 3.41
5041 5128 8.265055 ACTACTGCAAATATAAAAGCTACTCCA 58.735 33.333 0.00 0.00 0.00 3.86
5042 5129 8.664211 ACTACTGCAAATATAAAAGCTACTCC 57.336 34.615 0.00 0.00 0.00 3.85
5043 5130 9.922305 CAACTACTGCAAATATAAAAGCTACTC 57.078 33.333 0.00 0.00 0.00 2.59
5061 5148 4.326826 TGATCCTTTTCCTGCAACTACTG 58.673 43.478 0.00 0.00 0.00 2.74
5062 5149 4.640771 TGATCCTTTTCCTGCAACTACT 57.359 40.909 0.00 0.00 0.00 2.57
5063 5150 5.649831 AGATTGATCCTTTTCCTGCAACTAC 59.350 40.000 0.00 0.00 0.00 2.73
5064 5151 5.819991 AGATTGATCCTTTTCCTGCAACTA 58.180 37.500 0.00 0.00 0.00 2.24
5065 5152 4.670765 AGATTGATCCTTTTCCTGCAACT 58.329 39.130 0.00 0.00 0.00 3.16
5066 5153 5.397142 AAGATTGATCCTTTTCCTGCAAC 57.603 39.130 0.00 0.00 0.00 4.17
5072 5159 6.038714 ACGAGCAATAAGATTGATCCTTTTCC 59.961 38.462 10.84 0.00 31.69 3.13
5124 5211 4.514441 AGTCTGAGACATGCAACTGAAAAG 59.486 41.667 15.86 0.00 34.60 2.27
5146 5233 6.460781 TGGTAGGTAAAAGTACACATGACAG 58.539 40.000 0.00 0.00 31.21 3.51
5214 5304 6.360681 GTCAATCATAAACTGACAGCAACAAC 59.639 38.462 1.25 0.00 39.42 3.32
5275 5369 4.098044 TGGACGTAACATCTTCTGGATCTC 59.902 45.833 0.00 0.00 31.27 2.75
5276 5370 4.023980 TGGACGTAACATCTTCTGGATCT 58.976 43.478 0.00 0.00 31.27 2.75
5277 5371 4.386867 TGGACGTAACATCTTCTGGATC 57.613 45.455 0.00 0.00 31.27 3.36
5279 5373 3.118775 CCATGGACGTAACATCTTCTGGA 60.119 47.826 5.56 0.00 0.00 3.86
5281 5375 2.609459 GCCATGGACGTAACATCTTCTG 59.391 50.000 18.40 0.00 0.00 3.02
5282 5376 2.236146 TGCCATGGACGTAACATCTTCT 59.764 45.455 18.40 0.00 0.00 2.85
5283 5377 2.609459 CTGCCATGGACGTAACATCTTC 59.391 50.000 18.40 0.00 0.00 2.87
5284 5378 2.632377 CTGCCATGGACGTAACATCTT 58.368 47.619 18.40 0.00 0.00 2.40
5285 5379 1.134401 CCTGCCATGGACGTAACATCT 60.134 52.381 18.40 0.00 0.00 2.90
5286 5380 1.299541 CCTGCCATGGACGTAACATC 58.700 55.000 18.40 0.00 0.00 3.06
5287 5381 0.748005 GCCTGCCATGGACGTAACAT 60.748 55.000 18.40 0.00 0.00 2.71
5288 5382 1.376683 GCCTGCCATGGACGTAACA 60.377 57.895 18.40 1.00 0.00 2.41
5289 5383 2.112815 GGCCTGCCATGGACGTAAC 61.113 63.158 18.40 0.00 35.81 2.50
5290 5384 2.270850 GGCCTGCCATGGACGTAA 59.729 61.111 18.40 0.00 35.81 3.18
5291 5385 3.006133 TGGCCTGCCATGGACGTA 61.006 61.111 18.40 0.00 41.89 3.57
5468 5563 1.339055 TGATTCAGGTGGTGCTACTGC 60.339 52.381 0.00 0.00 40.20 4.40
5502 5602 4.737352 GCAAGCAGACAAATCAAAACCTGA 60.737 41.667 0.00 0.00 38.81 3.86
5553 5653 4.021981 ACAGCTCCTTTAATTTCTGTTGCC 60.022 41.667 0.00 0.00 31.51 4.52
5565 5665 3.403038 GCAGAACTGAACAGCTCCTTTA 58.597 45.455 5.97 0.00 0.00 1.85
5569 5669 0.319900 TCGCAGAACTGAACAGCTCC 60.320 55.000 5.97 0.00 0.00 4.70
5573 5673 2.030363 AGAGAGTCGCAGAACTGAACAG 60.030 50.000 5.97 0.00 39.69 3.16
5584 5684 1.740297 GAGTACCAGAGAGAGTCGCA 58.260 55.000 0.00 0.00 0.00 5.10
5592 5692 4.876679 CAGACAGAATACGAGTACCAGAGA 59.123 45.833 0.00 0.00 0.00 3.10
5593 5693 4.496673 GCAGACAGAATACGAGTACCAGAG 60.497 50.000 0.00 0.00 0.00 3.35
5594 5694 3.377485 GCAGACAGAATACGAGTACCAGA 59.623 47.826 0.00 0.00 0.00 3.86
5595 5695 3.378742 AGCAGACAGAATACGAGTACCAG 59.621 47.826 0.00 0.00 0.00 4.00
5596 5696 3.128764 CAGCAGACAGAATACGAGTACCA 59.871 47.826 0.00 0.00 0.00 3.25
5597 5697 3.377485 TCAGCAGACAGAATACGAGTACC 59.623 47.826 0.00 0.00 0.00 3.34
5598 5698 4.344448 GTCAGCAGACAGAATACGAGTAC 58.656 47.826 4.10 0.00 44.34 2.73
5599 5699 4.617808 GTCAGCAGACAGAATACGAGTA 57.382 45.455 4.10 0.00 44.34 2.59
5600 5700 3.495670 GTCAGCAGACAGAATACGAGT 57.504 47.619 4.10 0.00 44.34 4.18
5638 5749 1.028130 CCTGCTCGAGATGTCTGCTA 58.972 55.000 18.75 0.00 0.00 3.49
5640 5751 0.805322 CACCTGCTCGAGATGTCTGC 60.805 60.000 18.75 0.00 0.00 4.26
5641 5752 0.179116 CCACCTGCTCGAGATGTCTG 60.179 60.000 18.75 3.66 0.00 3.51
5642 5753 0.613292 ACCACCTGCTCGAGATGTCT 60.613 55.000 18.75 0.00 0.00 3.41
5643 5754 0.247736 AACCACCTGCTCGAGATGTC 59.752 55.000 18.75 0.00 0.00 3.06
5644 5755 0.036952 CAACCACCTGCTCGAGATGT 60.037 55.000 18.75 6.35 0.00 3.06
5646 5757 0.036952 CACAACCACCTGCTCGAGAT 60.037 55.000 18.75 0.00 0.00 2.75
5647 5758 1.367471 CACAACCACCTGCTCGAGA 59.633 57.895 18.75 0.02 0.00 4.04
5648 5759 1.669115 CCACAACCACCTGCTCGAG 60.669 63.158 8.45 8.45 0.00 4.04
5649 5760 2.137528 TCCACAACCACCTGCTCGA 61.138 57.895 0.00 0.00 0.00 4.04
5650 5761 1.961277 GTCCACAACCACCTGCTCG 60.961 63.158 0.00 0.00 0.00 5.03
5651 5762 0.465460 TTGTCCACAACCACCTGCTC 60.465 55.000 0.00 0.00 0.00 4.26
5683 5810 7.555087 CCATATGATTCAGACCTTATCTCCTC 58.445 42.308 3.65 0.00 34.41 3.71
5684 5811 6.070309 GCCATATGATTCAGACCTTATCTCCT 60.070 42.308 3.65 0.00 34.41 3.69
5685 5812 6.112058 GCCATATGATTCAGACCTTATCTCC 58.888 44.000 3.65 0.00 34.41 3.71
5686 5813 6.705302 TGCCATATGATTCAGACCTTATCTC 58.295 40.000 3.65 0.00 34.41 2.75
5706 5833 0.618458 ATACTTTCGCCCTCTTGCCA 59.382 50.000 0.00 0.00 0.00 4.92
5707 5834 1.751437 AATACTTTCGCCCTCTTGCC 58.249 50.000 0.00 0.00 0.00 4.52
5708 5835 2.747446 TGAAATACTTTCGCCCTCTTGC 59.253 45.455 0.00 0.00 42.55 4.01
5709 5836 3.751175 TGTGAAATACTTTCGCCCTCTTG 59.249 43.478 9.85 0.00 46.73 3.02
5710 5837 4.015872 TGTGAAATACTTTCGCCCTCTT 57.984 40.909 9.85 0.00 46.73 2.85
5711 5838 3.695830 TGTGAAATACTTTCGCCCTCT 57.304 42.857 9.85 0.00 46.73 3.69
5712 5839 4.215613 AGTTTGTGAAATACTTTCGCCCTC 59.784 41.667 9.85 2.31 46.73 4.30
5713 5840 4.142038 AGTTTGTGAAATACTTTCGCCCT 58.858 39.130 9.85 2.49 46.73 5.19
5714 5841 4.499037 AGTTTGTGAAATACTTTCGCCC 57.501 40.909 9.85 0.64 46.73 6.13
5715 5842 7.112984 CAGTTTAGTTTGTGAAATACTTTCGCC 59.887 37.037 9.85 0.00 46.73 5.54
5717 5844 9.498307 AACAGTTTAGTTTGTGAAATACTTTCG 57.502 29.630 0.00 0.00 42.55 3.46
5738 5865 9.783256 GTTGTGTAAAATACTTTCAGAAACAGT 57.217 29.630 0.00 0.00 0.00 3.55
5740 5867 9.781834 CAGTTGTGTAAAATACTTTCAGAAACA 57.218 29.630 0.00 0.00 0.00 2.83
5741 5868 9.997482 TCAGTTGTGTAAAATACTTTCAGAAAC 57.003 29.630 0.00 0.00 0.00 2.78
5742 5869 9.997482 GTCAGTTGTGTAAAATACTTTCAGAAA 57.003 29.630 0.00 0.00 0.00 2.52
5743 5870 9.391006 AGTCAGTTGTGTAAAATACTTTCAGAA 57.609 29.630 0.00 0.00 0.00 3.02
5744 5871 8.958119 AGTCAGTTGTGTAAAATACTTTCAGA 57.042 30.769 0.00 0.00 0.00 3.27
5745 5872 9.046296 AGAGTCAGTTGTGTAAAATACTTTCAG 57.954 33.333 0.00 0.00 0.00 3.02
5746 5873 8.958119 AGAGTCAGTTGTGTAAAATACTTTCA 57.042 30.769 0.00 0.00 0.00 2.69
5750 5877 9.174166 ACAAAAGAGTCAGTTGTGTAAAATACT 57.826 29.630 9.86 0.00 34.28 2.12
5751 5878 9.221775 CACAAAAGAGTCAGTTGTGTAAAATAC 57.778 33.333 21.88 0.00 44.51 1.89
5760 5887 2.098117 GCTGCACAAAAGAGTCAGTTGT 59.902 45.455 5.81 5.81 35.91 3.32
5761 5888 2.724349 GCTGCACAAAAGAGTCAGTTG 58.276 47.619 0.00 4.69 0.00 3.16
5762 5889 1.331756 CGCTGCACAAAAGAGTCAGTT 59.668 47.619 0.00 0.00 0.00 3.16
5763 5890 0.940126 CGCTGCACAAAAGAGTCAGT 59.060 50.000 0.00 0.00 0.00 3.41
5764 5891 0.385223 GCGCTGCACAAAAGAGTCAG 60.385 55.000 0.00 0.00 0.00 3.51
5765 5892 1.094650 TGCGCTGCACAAAAGAGTCA 61.095 50.000 9.73 0.00 31.71 3.41
5766 5893 0.385223 CTGCGCTGCACAAAAGAGTC 60.385 55.000 9.73 0.00 33.79 3.36
5767 5894 1.650912 CTGCGCTGCACAAAAGAGT 59.349 52.632 9.73 0.00 33.79 3.24
5768 5895 1.728426 GCTGCGCTGCACAAAAGAG 60.728 57.895 31.12 7.04 33.79 2.85
5769 5896 2.332514 GCTGCGCTGCACAAAAGA 59.667 55.556 31.12 0.00 33.79 2.52
5770 5897 3.095278 CGCTGCGCTGCACAAAAG 61.095 61.111 33.73 16.08 33.79 2.27
5793 5920 0.599991 TTATATGCAGCGCCCGACAG 60.600 55.000 2.29 0.00 0.00 3.51
5794 5921 0.179070 TTTATATGCAGCGCCCGACA 60.179 50.000 2.29 0.00 0.00 4.35
5795 5922 0.941542 TTTTATATGCAGCGCCCGAC 59.058 50.000 2.29 0.00 0.00 4.79
5796 5923 1.225855 CTTTTATATGCAGCGCCCGA 58.774 50.000 2.29 0.00 0.00 5.14
5797 5924 0.238289 CCTTTTATATGCAGCGCCCG 59.762 55.000 2.29 0.00 0.00 6.13
5798 5925 1.266989 GACCTTTTATATGCAGCGCCC 59.733 52.381 2.29 0.00 0.00 6.13
5799 5926 1.946768 TGACCTTTTATATGCAGCGCC 59.053 47.619 2.29 0.00 0.00 6.53
5800 5927 2.603173 GCTGACCTTTTATATGCAGCGC 60.603 50.000 0.00 0.00 39.23 5.92
5801 5928 3.259207 GCTGACCTTTTATATGCAGCG 57.741 47.619 0.00 0.00 39.23 5.18
5802 5929 3.004106 CCAGCTGACCTTTTATATGCAGC 59.996 47.826 17.39 0.00 46.58 5.25
5803 5930 3.567164 CCCAGCTGACCTTTTATATGCAG 59.433 47.826 17.39 0.00 0.00 4.41
5804 5931 3.053693 ACCCAGCTGACCTTTTATATGCA 60.054 43.478 17.39 0.00 0.00 3.96
5805 5932 3.316308 CACCCAGCTGACCTTTTATATGC 59.684 47.826 17.39 0.00 0.00 3.14
5806 5933 4.780815 TCACCCAGCTGACCTTTTATATG 58.219 43.478 17.39 0.00 0.00 1.78
5807 5934 5.450818 TTCACCCAGCTGACCTTTTATAT 57.549 39.130 17.39 0.00 0.00 0.86
5808 5935 4.919774 TTCACCCAGCTGACCTTTTATA 57.080 40.909 17.39 0.00 0.00 0.98
5809 5936 3.806949 TTCACCCAGCTGACCTTTTAT 57.193 42.857 17.39 0.00 0.00 1.40
5810 5937 3.586470 TTTCACCCAGCTGACCTTTTA 57.414 42.857 17.39 0.00 0.00 1.52
5811 5938 2.452600 TTTCACCCAGCTGACCTTTT 57.547 45.000 17.39 0.00 0.00 2.27
5812 5939 2.683211 ATTTCACCCAGCTGACCTTT 57.317 45.000 17.39 0.00 0.00 3.11
5813 5940 2.644798 AGTATTTCACCCAGCTGACCTT 59.355 45.455 17.39 0.00 0.00 3.50
5814 5941 2.237392 GAGTATTTCACCCAGCTGACCT 59.763 50.000 17.39 0.00 0.00 3.85
5815 5942 2.237392 AGAGTATTTCACCCAGCTGACC 59.763 50.000 17.39 0.00 0.00 4.02
5816 5943 3.618690 AGAGTATTTCACCCAGCTGAC 57.381 47.619 17.39 2.11 0.00 3.51
5817 5944 5.755409 TTAAGAGTATTTCACCCAGCTGA 57.245 39.130 17.39 0.00 0.00 4.26
5818 5945 6.817765 TTTTAAGAGTATTTCACCCAGCTG 57.182 37.500 6.78 6.78 0.00 4.24
5819 5946 6.775629 TGTTTTTAAGAGTATTTCACCCAGCT 59.224 34.615 0.00 0.00 0.00 4.24
5820 5947 6.977213 TGTTTTTAAGAGTATTTCACCCAGC 58.023 36.000 0.00 0.00 0.00 4.85
5821 5948 9.626045 GATTGTTTTTAAGAGTATTTCACCCAG 57.374 33.333 0.00 0.00 0.00 4.45
5822 5949 9.362151 AGATTGTTTTTAAGAGTATTTCACCCA 57.638 29.630 0.00 0.00 0.00 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.