Multiple sequence alignment - TraesCS5B01G173600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G173600 chr5B 100.000 3721 0 0 2172 5892 318875293 318871573 0.000000e+00 6872.0
1 TraesCS5B01G173600 chr5B 100.000 1940 0 0 1 1940 318877464 318875525 0.000000e+00 3583.0
2 TraesCS5B01G173600 chr5B 78.817 524 86 22 199 713 74528015 74528522 4.400000e-86 329.0
3 TraesCS5B01G173600 chr5B 86.395 147 13 2 2530 2676 139169350 139169211 2.840000e-33 154.0
4 TraesCS5B01G173600 chr5B 84.722 144 18 2 2518 2661 696737371 696737232 2.210000e-29 141.0
5 TraesCS5B01G173600 chr5A 92.799 1111 41 9 862 1940 370265954 370267057 0.000000e+00 1572.0
6 TraesCS5B01G173600 chr5A 91.211 1115 60 21 2315 3415 370267409 370268499 0.000000e+00 1482.0
7 TraesCS5B01G173600 chr5A 87.656 883 81 14 3990 4858 370269522 370270390 0.000000e+00 1002.0
8 TraesCS5B01G173600 chr5A 94.492 581 29 3 3415 3993 370268529 370269108 0.000000e+00 893.0
9 TraesCS5B01G173600 chr5A 87.654 648 51 12 4906 5527 370271212 370271856 0.000000e+00 726.0
10 TraesCS5B01G173600 chr5A 93.401 197 11 2 1 196 93188074 93187879 2.080000e-74 291.0
11 TraesCS5B01G173600 chr5A 91.241 137 12 0 2184 2320 370267249 370267385 2.800000e-43 187.0
12 TraesCS5B01G173600 chr5A 92.157 102 7 1 5787 5887 370271859 370271960 6.150000e-30 143.0
13 TraesCS5B01G173600 chr5D 92.493 1079 42 9 862 1908 281014626 281013555 0.000000e+00 1507.0
14 TraesCS5B01G173600 chr5D 91.187 1112 52 21 2318 3415 281013157 281012078 0.000000e+00 1469.0
15 TraesCS5B01G173600 chr5D 88.619 905 82 10 3990 4890 281011046 281010159 0.000000e+00 1081.0
16 TraesCS5B01G173600 chr5D 84.527 1047 67 38 4897 5892 281010058 281009056 0.000000e+00 948.0
17 TraesCS5B01G173600 chr5D 93.793 580 35 1 3415 3993 281012048 281011469 0.000000e+00 870.0
18 TraesCS5B01G173600 chr5D 78.987 533 61 29 210 709 396382001 396382515 3.430000e-82 316.0
19 TraesCS5B01G173600 chr5D 89.474 247 22 4 5518 5761 451067388 451067143 5.730000e-80 309.0
20 TraesCS5B01G173600 chr5D 94.416 197 8 3 1 196 390366702 390366508 3.450000e-77 300.0
21 TraesCS5B01G173600 chr5D 94.631 149 8 0 2172 2320 281013332 281013184 1.280000e-56 231.0
22 TraesCS5B01G173600 chr5D 84.677 124 16 1 2530 2653 326125899 326125779 2.880000e-23 121.0
23 TraesCS5B01G173600 chr5D 80.556 144 22 5 570 708 539980711 539980853 8.080000e-19 106.0
24 TraesCS5B01G173600 chr5D 84.314 102 16 0 2528 2629 87803351 87803452 3.760000e-17 100.0
25 TraesCS5B01G173600 chr6D 81.836 523 69 15 209 709 42922007 42921489 3.280000e-112 416.0
26 TraesCS5B01G173600 chr6D 81.549 439 60 17 197 623 420018135 420017706 5.650000e-90 342.0
27 TraesCS5B01G173600 chr6D 93.401 197 9 4 1 196 367927762 367927955 7.470000e-74 289.0
28 TraesCS5B01G173600 chr6D 76.108 519 95 20 211 709 159598168 159597659 1.640000e-60 244.0
29 TraesCS5B01G173600 chr6D 83.448 145 21 1 2530 2674 446744162 446744021 1.330000e-26 132.0
30 TraesCS5B01G173600 chr6D 76.471 289 35 11 570 841 100345386 100345658 6.200000e-25 126.0
31 TraesCS5B01G173600 chr1D 78.635 674 93 27 211 843 367836312 367835649 3.310000e-107 399.0
32 TraesCS5B01G173600 chr1D 93.878 196 12 0 1 196 19141429 19141234 4.460000e-76 296.0
33 TraesCS5B01G173600 chr1D 76.822 535 74 21 211 709 109083054 109083574 7.580000e-64 255.0
34 TraesCS5B01G173600 chr3D 86.686 338 34 9 211 542 580344749 580344417 1.210000e-96 364.0
35 TraesCS5B01G173600 chr3D 88.889 261 24 5 5515 5772 491959991 491960249 3.430000e-82 316.0
36 TraesCS5B01G173600 chr3D 88.506 261 25 5 5515 5771 255424430 255424689 1.590000e-80 311.0
37 TraesCS5B01G173600 chr3D 93.878 196 10 2 1 196 591715091 591714898 1.610000e-75 294.0
38 TraesCS5B01G173600 chr3D 75.035 709 103 38 197 844 7069905 7069210 1.630000e-65 261.0
39 TraesCS5B01G173600 chr3D 74.928 694 105 39 212 849 199540811 199540131 2.730000e-63 254.0
40 TraesCS5B01G173600 chr3D 85.833 120 17 0 727 846 352104024 352104143 1.720000e-25 128.0
41 TraesCS5B01G173600 chr3D 80.128 156 24 4 2523 2676 139832631 139832481 6.240000e-20 110.0
42 TraesCS5B01G173600 chr3D 80.556 144 25 1 2530 2673 313284814 313284954 2.250000e-19 108.0
43 TraesCS5B01G173600 chr3D 83.333 102 17 0 2528 2629 426064473 426064372 1.750000e-15 95.3
44 TraesCS5B01G173600 chr3D 81.579 114 19 2 2514 2626 442977249 442977361 6.290000e-15 93.5
45 TraesCS5B01G173600 chr1B 76.583 679 107 27 211 842 688402390 688401717 5.690000e-85 326.0
46 TraesCS5B01G173600 chr1B 83.384 331 45 9 197 521 47203060 47203386 1.240000e-76 298.0
47 TraesCS5B01G173600 chr1B 82.517 143 19 3 2541 2681 44367033 44366895 2.880000e-23 121.0
48 TraesCS5B01G173600 chr2D 89.147 258 23 5 5515 5768 325807357 325807613 3.430000e-82 316.0
49 TraesCS5B01G173600 chr2D 84.984 313 39 7 232 541 130900716 130900409 1.590000e-80 311.0
50 TraesCS5B01G173600 chr2D 94.388 196 9 2 1 196 160319754 160319947 3.450000e-77 300.0
51 TraesCS5B01G173600 chr2D 87.931 116 14 0 727 842 161896392 161896507 2.860000e-28 137.0
52 TraesCS5B01G173600 chr2D 86.777 121 16 0 726 846 59634125 59634005 1.030000e-27 135.0
53 TraesCS5B01G173600 chr2D 82.877 146 21 2 2529 2673 636489529 636489387 1.720000e-25 128.0
54 TraesCS5B01G173600 chr2D 82.550 149 20 4 2527 2673 82141605 82141749 6.200000e-25 126.0
55 TraesCS5B01G173600 chr2D 81.579 152 24 2 2526 2676 194819113 194818965 8.020000e-24 122.0
56 TraesCS5B01G173600 chr2A 88.803 259 24 4 5518 5772 561299000 561298743 4.430000e-81 313.0
57 TraesCS5B01G173600 chr2A 73.961 722 113 34 199 849 768684440 768685157 7.690000e-54 222.0
58 TraesCS5B01G173600 chr2A 82.456 171 19 7 570 730 617696220 617696389 7.960000e-29 139.0
59 TraesCS5B01G173600 chr4D 89.796 245 21 4 5520 5761 494486399 494486642 1.590000e-80 311.0
60 TraesCS5B01G173600 chr4D 93.401 197 10 3 1 196 361884595 361884789 7.470000e-74 289.0
61 TraesCS5B01G173600 chr4D 93.401 197 10 3 1 196 374339592 374339786 7.470000e-74 289.0
62 TraesCS5B01G173600 chr4D 74.963 679 95 34 232 843 37512519 37513189 5.900000e-60 243.0
63 TraesCS5B01G173600 chr4D 78.056 360 60 17 365 710 471273205 471272851 5.980000e-50 209.0
64 TraesCS5B01G173600 chr4D 74.615 520 82 27 232 709 50759941 50760452 3.630000e-42 183.0
65 TraesCS5B01G173600 chr4D 86.441 118 16 0 727 844 475197742 475197859 4.790000e-26 130.0
66 TraesCS5B01G173600 chr4D 87.654 81 6 3 2601 2680 18695916 18695993 2.260000e-14 91.6
67 TraesCS5B01G173600 chr4B 83.578 341 45 10 210 540 37117893 37117554 5.730000e-80 309.0
68 TraesCS5B01G173600 chr4B 83.453 139 21 1 2523 2661 277390704 277390840 1.720000e-25 128.0
69 TraesCS5B01G173600 chr1A 89.474 247 22 4 5518 5761 478205875 478205630 5.730000e-80 309.0
70 TraesCS5B01G173600 chr1A 87.069 116 15 0 727 842 139556998 139556883 1.330000e-26 132.0
71 TraesCS5B01G173600 chr1A 82.955 88 11 2 2586 2673 497337411 497337328 6.330000e-10 76.8
72 TraesCS5B01G173600 chr6A 87.500 264 23 7 5515 5772 374422701 374422960 4.460000e-76 296.0
73 TraesCS5B01G173600 chr6A 76.164 537 83 25 210 710 49074050 49074577 2.120000e-59 241.0
74 TraesCS5B01G173600 chr6A 77.288 295 50 11 425 707 69923733 69923444 2.200000e-34 158.0
75 TraesCS5B01G173600 chr6A 84.247 146 16 3 2528 2673 245764342 245764480 1.030000e-27 135.0
76 TraesCS5B01G173600 chr6A 80.137 146 23 3 2523 2666 295602468 295602609 2.900000e-18 104.0
77 TraesCS5B01G173600 chrUn 78.244 524 68 22 365 849 28721749 28722265 1.610000e-75 294.0
78 TraesCS5B01G173600 chrUn 76.667 510 91 18 223 711 33347402 33347904 2.110000e-64 257.0
79 TraesCS5B01G173600 chrUn 78.708 418 50 21 240 623 66499860 66499448 5.900000e-60 243.0
80 TraesCS5B01G173600 chrUn 74.662 517 83 25 367 843 385390100 385389592 1.010000e-42 185.0
81 TraesCS5B01G173600 chrUn 74.612 516 84 26 367 843 33523801 33524308 3.630000e-42 183.0
82 TraesCS5B01G173600 chrUn 74.563 515 86 22 365 842 91337354 91337860 3.630000e-42 183.0
83 TraesCS5B01G173600 chrUn 74.612 516 84 26 367 843 385451522 385451015 3.630000e-42 183.0
84 TraesCS5B01G173600 chrUn 74.517 518 84 26 367 843 33809448 33808938 1.300000e-41 182.0
85 TraesCS5B01G173600 chrUn 74.468 517 84 25 367 843 33957588 33957080 4.690000e-41 180.0
86 TraesCS5B01G173600 chrUn 74.275 517 85 25 367 843 33962446 33961938 2.180000e-39 174.0
87 TraesCS5B01G173600 chrUn 86.290 124 16 1 727 850 98199731 98199609 3.700000e-27 134.0
88 TraesCS5B01G173600 chrUn 97.826 46 1 0 578 623 270789801 270789846 4.890000e-11 80.5
89 TraesCS5B01G173600 chrUn 93.478 46 3 0 2534 2579 73587679 73587724 1.060000e-07 69.4
90 TraesCS5B01G173600 chr7D 93.401 197 9 4 1 196 505611968 505611775 7.470000e-74 289.0
91 TraesCS5B01G173600 chr7D 74.175 515 91 23 365 841 629616225 629616735 6.070000e-40 176.0
92 TraesCS5B01G173600 chr7D 85.897 156 18 2 2526 2680 500259449 500259297 4.720000e-36 163.0
93 TraesCS5B01G173600 chr7D 83.553 152 16 5 569 713 112879414 112879563 3.700000e-27 134.0
94 TraesCS5B01G173600 chr7D 82.781 151 15 8 569 710 112919945 112920093 2.230000e-24 124.0
95 TraesCS5B01G173600 chr7D 81.507 146 24 1 2531 2676 629317041 629316899 3.730000e-22 117.0
96 TraesCS5B01G173600 chr6B 75.287 696 96 38 210 844 24452867 24452187 4.530000e-66 263.0
97 TraesCS5B01G173600 chr6B 84.247 146 16 3 2528 2673 302595795 302595933 1.030000e-27 135.0
98 TraesCS5B01G173600 chr4A 84.049 163 21 4 2529 2689 321329341 321329182 1.020000e-32 152.0
99 TraesCS5B01G173600 chr4A 82.313 147 23 3 2526 2672 527504773 527504630 2.230000e-24 124.0
100 TraesCS5B01G173600 chr2B 88.136 118 14 0 727 844 43160207 43160090 2.210000e-29 141.0
101 TraesCS5B01G173600 chr3B 83.117 154 21 3 2524 2676 284336966 284336817 1.030000e-27 135.0
102 TraesCS5B01G173600 chr7A 82.895 152 21 2 2526 2676 573456806 573456659 1.330000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G173600 chr5B 318871573 318877464 5891 True 5227.500000 6872 100.000 1 5892 2 chr5B.!!$R3 5891
1 TraesCS5B01G173600 chr5B 74528015 74528522 507 False 329.000000 329 78.817 199 713 1 chr5B.!!$F1 514
2 TraesCS5B01G173600 chr5A 370265954 370271960 6006 False 857.857143 1572 91.030 862 5887 7 chr5A.!!$F1 5025
3 TraesCS5B01G173600 chr5D 281009056 281014626 5570 True 1017.666667 1507 90.875 862 5892 6 chr5D.!!$R4 5030
4 TraesCS5B01G173600 chr5D 396382001 396382515 514 False 316.000000 316 78.987 210 709 1 chr5D.!!$F2 499
5 TraesCS5B01G173600 chr6D 42921489 42922007 518 True 416.000000 416 81.836 209 709 1 chr6D.!!$R1 500
6 TraesCS5B01G173600 chr6D 159597659 159598168 509 True 244.000000 244 76.108 211 709 1 chr6D.!!$R2 498
7 TraesCS5B01G173600 chr1D 367835649 367836312 663 True 399.000000 399 78.635 211 843 1 chr1D.!!$R2 632
8 TraesCS5B01G173600 chr1D 109083054 109083574 520 False 255.000000 255 76.822 211 709 1 chr1D.!!$F1 498
9 TraesCS5B01G173600 chr3D 7069210 7069905 695 True 261.000000 261 75.035 197 844 1 chr3D.!!$R1 647
10 TraesCS5B01G173600 chr3D 199540131 199540811 680 True 254.000000 254 74.928 212 849 1 chr3D.!!$R3 637
11 TraesCS5B01G173600 chr1B 688401717 688402390 673 True 326.000000 326 76.583 211 842 1 chr1B.!!$R2 631
12 TraesCS5B01G173600 chr2A 768684440 768685157 717 False 222.000000 222 73.961 199 849 1 chr2A.!!$F2 650
13 TraesCS5B01G173600 chr4D 37512519 37513189 670 False 243.000000 243 74.963 232 843 1 chr4D.!!$F2 611
14 TraesCS5B01G173600 chr6A 49074050 49074577 527 False 241.000000 241 76.164 210 710 1 chr6A.!!$F1 500
15 TraesCS5B01G173600 chrUn 28721749 28722265 516 False 294.000000 294 78.244 365 849 1 chrUn.!!$F1 484
16 TraesCS5B01G173600 chrUn 33347402 33347904 502 False 257.000000 257 76.667 223 711 1 chrUn.!!$F2 488
17 TraesCS5B01G173600 chr6B 24452187 24452867 680 True 263.000000 263 75.287 210 844 1 chr6B.!!$R1 634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
384 396 0.040958 CGTGCCTCTTGTGAAAGCAC 60.041 55.0 3.43 3.43 43.44 4.40 F
857 1212 0.109532 GCTCTCCCCAATAGCTTCCC 59.890 60.0 0.00 0.00 33.40 3.97 F
2475 2907 0.039618 GGTCTTTGGAGCCCCATTGA 59.960 55.0 0.00 0.00 43.12 2.57 F
3855 4331 0.397564 TGTCCTGCTGTGCTGATGAA 59.602 50.0 0.00 0.00 0.00 2.57 F
4534 5459 0.464036 AGACCGCTCAACTGTGAACA 59.536 50.0 0.00 0.00 31.88 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1386 1770 0.895530 CCTCTCTACTCAAACCGGCA 59.104 55.0 0.00 0.0 0.00 5.69 R
2690 3132 0.605589 ACAGTGCCACTAGTCTCAGC 59.394 55.0 0.00 0.0 0.00 4.26 R
4088 4999 0.323302 TCCCACGTGCAGCTCAATAA 59.677 50.0 10.91 0.0 0.00 1.40 R
4765 5694 0.317479 ACACGCTCACTAACTGTCCC 59.683 55.0 0.00 0.0 0.00 4.46 R
5409 7149 0.378257 CGGACCTGATGGAAATTGCG 59.622 55.0 0.00 0.0 37.04 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 6.921332 ATGTTTTATCTTTTAAACCGTGCG 57.079 33.333 0.00 0.00 34.21 5.34
45 46 5.819059 TGTTTTATCTTTTAAACCGTGCGT 58.181 33.333 0.00 0.00 34.21 5.24
46 47 5.908499 TGTTTTATCTTTTAAACCGTGCGTC 59.092 36.000 0.00 0.00 34.21 5.19
47 48 4.666928 TTATCTTTTAAACCGTGCGTCC 57.333 40.909 0.00 0.00 0.00 4.79
48 49 1.950828 TCTTTTAAACCGTGCGTCCA 58.049 45.000 0.00 0.00 0.00 4.02
49 50 2.286872 TCTTTTAAACCGTGCGTCCAA 58.713 42.857 0.00 0.00 0.00 3.53
50 51 2.681848 TCTTTTAAACCGTGCGTCCAAA 59.318 40.909 0.00 0.00 0.00 3.28
51 52 3.315749 TCTTTTAAACCGTGCGTCCAAAT 59.684 39.130 0.00 0.00 0.00 2.32
52 53 2.973419 TTAAACCGTGCGTCCAAATC 57.027 45.000 0.00 0.00 0.00 2.17
53 54 2.172851 TAAACCGTGCGTCCAAATCT 57.827 45.000 0.00 0.00 0.00 2.40
54 55 0.872388 AAACCGTGCGTCCAAATCTC 59.128 50.000 0.00 0.00 0.00 2.75
55 56 1.289109 AACCGTGCGTCCAAATCTCG 61.289 55.000 0.00 0.00 0.00 4.04
56 57 1.445410 CCGTGCGTCCAAATCTCGA 60.445 57.895 0.00 0.00 0.00 4.04
57 58 1.011968 CCGTGCGTCCAAATCTCGAA 61.012 55.000 0.00 0.00 0.00 3.71
58 59 0.093026 CGTGCGTCCAAATCTCGAAC 59.907 55.000 0.00 0.00 0.00 3.95
59 60 0.442699 GTGCGTCCAAATCTCGAACC 59.557 55.000 0.00 0.00 0.00 3.62
60 61 1.011968 TGCGTCCAAATCTCGAACCG 61.012 55.000 0.00 0.00 0.00 4.44
61 62 1.012486 GCGTCCAAATCTCGAACCGT 61.012 55.000 0.00 0.00 0.00 4.83
62 63 1.425412 CGTCCAAATCTCGAACCGTT 58.575 50.000 0.00 0.00 0.00 4.44
63 64 1.796459 CGTCCAAATCTCGAACCGTTT 59.204 47.619 0.00 0.00 0.00 3.60
64 65 2.222445 CGTCCAAATCTCGAACCGTTTT 59.778 45.455 0.00 0.00 0.00 2.43
65 66 3.663493 CGTCCAAATCTCGAACCGTTTTC 60.663 47.826 0.00 0.00 0.00 2.29
66 67 3.249080 GTCCAAATCTCGAACCGTTTTCA 59.751 43.478 0.00 0.00 0.00 2.69
67 68 4.069304 TCCAAATCTCGAACCGTTTTCAT 58.931 39.130 0.00 0.00 0.00 2.57
68 69 4.153475 TCCAAATCTCGAACCGTTTTCATC 59.847 41.667 0.00 0.00 0.00 2.92
69 70 3.991605 AATCTCGAACCGTTTTCATCG 57.008 42.857 0.00 0.00 36.67 3.84
70 71 2.427232 TCTCGAACCGTTTTCATCGT 57.573 45.000 0.00 0.00 36.70 3.73
71 72 2.746269 TCTCGAACCGTTTTCATCGTT 58.254 42.857 0.00 0.00 36.70 3.85
72 73 2.473609 TCTCGAACCGTTTTCATCGTTG 59.526 45.455 0.00 0.00 36.70 4.10
73 74 1.527736 TCGAACCGTTTTCATCGTTGG 59.472 47.619 0.00 0.00 36.70 3.77
74 75 1.527736 CGAACCGTTTTCATCGTTGGA 59.472 47.619 0.00 0.00 0.00 3.53
75 76 2.158841 CGAACCGTTTTCATCGTTGGAT 59.841 45.455 0.00 0.00 0.00 3.41
76 77 3.364565 CGAACCGTTTTCATCGTTGGATT 60.365 43.478 0.00 0.00 0.00 3.01
77 78 4.542735 GAACCGTTTTCATCGTTGGATTT 58.457 39.130 0.00 0.00 0.00 2.17
78 79 4.155310 ACCGTTTTCATCGTTGGATTTC 57.845 40.909 0.00 0.00 0.00 2.17
79 80 3.818773 ACCGTTTTCATCGTTGGATTTCT 59.181 39.130 0.00 0.00 0.00 2.52
80 81 4.083484 ACCGTTTTCATCGTTGGATTTCTC 60.083 41.667 0.00 0.00 0.00 2.87
81 82 4.081761 CGTTTTCATCGTTGGATTTCTCG 58.918 43.478 0.00 0.00 0.00 4.04
82 83 3.740044 TTTCATCGTTGGATTTCTCGC 57.260 42.857 0.00 0.00 0.00 5.03
83 84 1.277326 TCATCGTTGGATTTCTCGCG 58.723 50.000 0.00 0.00 0.00 5.87
84 85 0.999406 CATCGTTGGATTTCTCGCGT 59.001 50.000 5.77 0.00 0.00 6.01
85 86 1.005975 CATCGTTGGATTTCTCGCGTC 60.006 52.381 5.77 0.00 0.00 5.19
86 87 1.068832 TCGTTGGATTTCTCGCGTCG 61.069 55.000 5.77 0.00 0.00 5.12
87 88 1.068832 CGTTGGATTTCTCGCGTCGA 61.069 55.000 5.77 0.63 0.00 4.20
98 99 2.341318 TCGCGTCGAGATCTTCAAAA 57.659 45.000 5.77 0.00 0.00 2.44
99 100 1.983605 TCGCGTCGAGATCTTCAAAAC 59.016 47.619 5.77 0.00 0.00 2.43
100 101 1.986378 CGCGTCGAGATCTTCAAAACT 59.014 47.619 0.00 0.00 0.00 2.66
101 102 3.120095 TCGCGTCGAGATCTTCAAAACTA 60.120 43.478 5.77 0.00 0.00 2.24
102 103 3.238570 CGCGTCGAGATCTTCAAAACTAG 59.761 47.826 0.00 0.00 0.00 2.57
103 104 4.413087 GCGTCGAGATCTTCAAAACTAGA 58.587 43.478 0.00 0.00 0.00 2.43
104 105 5.038033 GCGTCGAGATCTTCAAAACTAGAT 58.962 41.667 0.00 0.00 0.00 1.98
105 106 5.172411 GCGTCGAGATCTTCAAAACTAGATC 59.828 44.000 0.00 0.00 37.89 2.75
106 107 5.683743 CGTCGAGATCTTCAAAACTAGATCC 59.316 44.000 0.00 1.33 38.24 3.36
107 108 5.980715 GTCGAGATCTTCAAAACTAGATCCC 59.019 44.000 0.00 0.00 38.24 3.85
108 109 5.656859 TCGAGATCTTCAAAACTAGATCCCA 59.343 40.000 0.00 0.00 38.24 4.37
109 110 6.325028 TCGAGATCTTCAAAACTAGATCCCAT 59.675 38.462 0.00 0.00 38.24 4.00
110 111 6.423302 CGAGATCTTCAAAACTAGATCCCATG 59.577 42.308 0.00 0.00 38.24 3.66
111 112 7.205515 AGATCTTCAAAACTAGATCCCATGT 57.794 36.000 0.00 0.00 38.24 3.21
112 113 7.637511 AGATCTTCAAAACTAGATCCCATGTT 58.362 34.615 0.00 0.00 38.24 2.71
113 114 7.555554 AGATCTTCAAAACTAGATCCCATGTTG 59.444 37.037 0.00 0.00 38.24 3.33
114 115 6.778821 TCTTCAAAACTAGATCCCATGTTGA 58.221 36.000 0.00 0.00 0.00 3.18
115 116 7.405292 TCTTCAAAACTAGATCCCATGTTGAT 58.595 34.615 0.00 0.00 0.00 2.57
116 117 8.548025 TCTTCAAAACTAGATCCCATGTTGATA 58.452 33.333 0.00 0.00 0.00 2.15
117 118 8.737168 TTCAAAACTAGATCCCATGTTGATAG 57.263 34.615 0.00 0.00 0.00 2.08
118 119 7.282585 TCAAAACTAGATCCCATGTTGATAGG 58.717 38.462 0.00 0.00 0.00 2.57
119 120 6.831664 AAACTAGATCCCATGTTGATAGGT 57.168 37.500 0.00 0.00 0.00 3.08
120 121 6.831664 AACTAGATCCCATGTTGATAGGTT 57.168 37.500 0.00 0.00 0.00 3.50
121 122 6.831664 ACTAGATCCCATGTTGATAGGTTT 57.168 37.500 0.00 0.00 0.00 3.27
122 123 7.213178 ACTAGATCCCATGTTGATAGGTTTT 57.787 36.000 0.00 0.00 0.00 2.43
123 124 7.056635 ACTAGATCCCATGTTGATAGGTTTTG 58.943 38.462 0.00 0.00 0.00 2.44
124 125 6.078456 AGATCCCATGTTGATAGGTTTTGA 57.922 37.500 0.00 0.00 0.00 2.69
125 126 6.676558 AGATCCCATGTTGATAGGTTTTGAT 58.323 36.000 0.00 0.00 0.00 2.57
126 127 6.548622 AGATCCCATGTTGATAGGTTTTGATG 59.451 38.462 0.00 0.00 0.00 3.07
127 128 5.825532 TCCCATGTTGATAGGTTTTGATGA 58.174 37.500 0.00 0.00 0.00 2.92
128 129 6.252233 TCCCATGTTGATAGGTTTTGATGAA 58.748 36.000 0.00 0.00 0.00 2.57
129 130 6.152661 TCCCATGTTGATAGGTTTTGATGAAC 59.847 38.462 0.00 0.00 0.00 3.18
130 131 6.153340 CCCATGTTGATAGGTTTTGATGAACT 59.847 38.462 0.00 0.00 0.00 3.01
131 132 7.309990 CCCATGTTGATAGGTTTTGATGAACTT 60.310 37.037 0.00 0.00 0.00 2.66
132 133 8.090214 CCATGTTGATAGGTTTTGATGAACTTT 58.910 33.333 0.00 0.00 0.00 2.66
133 134 9.480053 CATGTTGATAGGTTTTGATGAACTTTT 57.520 29.630 0.00 0.00 0.00 2.27
134 135 9.696917 ATGTTGATAGGTTTTGATGAACTTTTC 57.303 29.630 0.00 0.00 0.00 2.29
135 136 8.912988 TGTTGATAGGTTTTGATGAACTTTTCT 58.087 29.630 0.00 0.00 0.00 2.52
136 137 9.750125 GTTGATAGGTTTTGATGAACTTTTCTT 57.250 29.630 0.00 0.00 0.00 2.52
141 142 8.479313 AGGTTTTGATGAACTTTTCTTTTCAC 57.521 30.769 0.00 0.00 34.61 3.18
142 143 7.275560 AGGTTTTGATGAACTTTTCTTTTCACG 59.724 33.333 0.00 0.00 34.61 4.35
143 144 7.274686 GGTTTTGATGAACTTTTCTTTTCACGA 59.725 33.333 0.00 0.00 34.61 4.35
144 145 8.643752 GTTTTGATGAACTTTTCTTTTCACGAA 58.356 29.630 0.00 0.00 34.61 3.85
145 146 8.749841 TTTGATGAACTTTTCTTTTCACGAAA 57.250 26.923 0.00 0.00 34.61 3.46
146 147 8.749841 TTGATGAACTTTTCTTTTCACGAAAA 57.250 26.923 4.95 4.95 37.85 2.29
147 148 8.749841 TGATGAACTTTTCTTTTCACGAAAAA 57.250 26.923 6.43 0.00 39.18 1.94
176 177 2.903404 AAAAACCAAACCGGGAGCA 58.097 47.368 6.32 0.00 40.22 4.26
177 178 0.462375 AAAAACCAAACCGGGAGCAC 59.538 50.000 6.32 0.00 40.22 4.40
178 179 1.730451 AAAACCAAACCGGGAGCACG 61.730 55.000 6.32 0.00 40.22 5.34
179 180 2.612095 AAACCAAACCGGGAGCACGA 62.612 55.000 6.32 0.00 40.22 4.35
180 181 2.742372 CCAAACCGGGAGCACGAG 60.742 66.667 6.32 0.00 35.47 4.18
181 182 2.030562 CAAACCGGGAGCACGAGT 59.969 61.111 6.32 0.00 35.47 4.18
182 183 1.597027 CAAACCGGGAGCACGAGTT 60.597 57.895 6.32 0.00 35.47 3.01
183 184 1.147600 AAACCGGGAGCACGAGTTT 59.852 52.632 6.32 0.01 34.66 2.66
184 185 0.464916 AAACCGGGAGCACGAGTTTT 60.465 50.000 6.32 0.00 35.37 2.43
185 186 0.464916 AACCGGGAGCACGAGTTTTT 60.465 50.000 6.32 0.00 35.47 1.94
203 204 0.680618 TTTCCTTTCCGACGTGCCTA 59.319 50.000 0.00 0.00 0.00 3.93
321 331 3.773974 GTGCCTCTCGCGAAAGAG 58.226 61.111 11.91 14.48 42.09 2.85
362 374 5.734855 TTTTTCCTTTTCTGAGAGTCACG 57.265 39.130 0.00 0.00 0.00 4.35
363 375 3.386768 TTCCTTTTCTGAGAGTCACGG 57.613 47.619 0.00 0.00 0.00 4.94
384 396 0.040958 CGTGCCTCTTGTGAAAGCAC 60.041 55.000 3.43 3.43 43.44 4.40
403 504 1.623811 ACAACCGTGCCTACTCAGAAT 59.376 47.619 0.00 0.00 0.00 2.40
497 649 2.772287 CCTCTCTCGAAAGCAAAACCT 58.228 47.619 0.00 0.00 0.00 3.50
515 778 0.382515 CTTACCTCTCGCGGAAGGAG 59.617 60.000 27.36 18.73 0.00 3.69
553 836 3.650369 TTTTTCCGTGCCTCTCGC 58.350 55.556 0.00 0.00 38.31 5.03
574 857 2.618709 CGGAAGCAGAAAAGGTGAAAGT 59.381 45.455 0.00 0.00 0.00 2.66
684 993 7.811117 TTCTCCAAAATTTAAGAAAGACCGA 57.189 32.000 7.68 0.00 0.00 4.69
791 1146 1.211969 GTCGAGAGCGTGCCAAGTA 59.788 57.895 0.00 0.00 38.98 2.24
806 1161 3.485877 GCCAAGTAATGCTGATCGTTGTC 60.486 47.826 0.00 0.00 0.00 3.18
807 1162 3.935203 CCAAGTAATGCTGATCGTTGTCT 59.065 43.478 0.00 0.00 0.00 3.41
849 1204 4.623171 CGTTAACTAGTTGCTCTCCCCAAT 60.623 45.833 18.56 0.00 0.00 3.16
850 1205 5.394883 CGTTAACTAGTTGCTCTCCCCAATA 60.395 44.000 18.56 0.00 0.00 1.90
851 1206 4.762289 AACTAGTTGCTCTCCCCAATAG 57.238 45.455 7.48 0.00 0.00 1.73
852 1207 2.436173 ACTAGTTGCTCTCCCCAATAGC 59.564 50.000 0.00 0.00 36.77 2.97
853 1208 1.589414 AGTTGCTCTCCCCAATAGCT 58.411 50.000 0.00 0.00 37.16 3.32
854 1209 1.918957 AGTTGCTCTCCCCAATAGCTT 59.081 47.619 0.00 0.00 37.16 3.74
855 1210 2.092699 AGTTGCTCTCCCCAATAGCTTC 60.093 50.000 0.00 0.00 37.16 3.86
856 1211 0.839946 TGCTCTCCCCAATAGCTTCC 59.160 55.000 0.00 0.00 37.16 3.46
857 1212 0.109532 GCTCTCCCCAATAGCTTCCC 59.890 60.000 0.00 0.00 33.40 3.97
858 1213 1.813102 CTCTCCCCAATAGCTTCCCT 58.187 55.000 0.00 0.00 0.00 4.20
859 1214 2.977808 CTCTCCCCAATAGCTTCCCTA 58.022 52.381 0.00 0.00 0.00 3.53
860 1215 2.635427 CTCTCCCCAATAGCTTCCCTAC 59.365 54.545 0.00 0.00 0.00 3.18
861 1216 1.344763 CTCCCCAATAGCTTCCCTACG 59.655 57.143 0.00 0.00 0.00 3.51
862 1217 0.396811 CCCCAATAGCTTCCCTACGG 59.603 60.000 0.00 0.00 0.00 4.02
863 1218 1.420430 CCCAATAGCTTCCCTACGGA 58.580 55.000 0.00 0.00 35.88 4.69
864 1219 1.070289 CCCAATAGCTTCCCTACGGAC 59.930 57.143 0.00 0.00 38.14 4.79
865 1220 2.040178 CCAATAGCTTCCCTACGGACT 58.960 52.381 0.00 0.00 38.14 3.85
866 1221 3.228453 CCAATAGCTTCCCTACGGACTA 58.772 50.000 0.00 0.00 38.14 2.59
867 1222 3.256136 CCAATAGCTTCCCTACGGACTAG 59.744 52.174 0.00 0.00 38.14 2.57
904 1259 2.623915 CCTGCAGCTGCTCCAACAC 61.624 63.158 36.61 8.49 42.66 3.32
919 1274 0.458260 AACACGAGCCCAAACAAACC 59.542 50.000 0.00 0.00 0.00 3.27
929 1284 1.138069 CCAAACAAACCGCCCTTTCTT 59.862 47.619 0.00 0.00 0.00 2.52
938 1293 4.366684 CCCTTTCTTGGGCCGGCT 62.367 66.667 28.56 0.00 40.84 5.52
989 1344 4.880426 ACCATCTCCCGCCCCGAT 62.880 66.667 0.00 0.00 0.00 4.18
995 1350 3.323286 TCCCGCCCCGATTGAACA 61.323 61.111 0.00 0.00 0.00 3.18
1032 1387 0.635009 TAGGGTTCCTCACTCCCGAT 59.365 55.000 0.00 0.00 45.27 4.18
1306 1690 3.147629 CCCTCCTATTCTCGTACGTCAT 58.852 50.000 16.05 8.31 0.00 3.06
1386 1770 2.340427 CAACGGTGCATCTTTGGGT 58.660 52.632 8.28 0.00 0.00 4.51
1396 1780 0.178975 ATCTTTGGGTGCCGGTTTGA 60.179 50.000 1.90 0.00 0.00 2.69
1495 1879 1.005294 GCTTTGATGGCGTGTTGCTG 61.005 55.000 0.00 0.00 45.43 4.41
1558 1942 4.608948 AGACAGAAAAGTTGACGGAGAT 57.391 40.909 0.00 0.00 0.00 2.75
1576 1960 5.066505 CGGAGATGGGAAAAAGGTTATCAAG 59.933 44.000 0.00 0.00 0.00 3.02
1700 2084 5.986135 ACATATAACTCTTCTCAACATCGCC 59.014 40.000 0.00 0.00 0.00 5.54
1717 2101 1.303309 GCCCTTTCGATGACCTCATG 58.697 55.000 0.00 0.00 36.57 3.07
1766 2150 3.309682 GCGCATTCAATTGTAGTAGAGCA 59.690 43.478 0.30 0.00 0.00 4.26
1828 2213 5.470098 TCTCTTGTTCAATCGAGAAAAAGGG 59.530 40.000 14.22 12.11 42.32 3.95
1922 2318 2.568956 TGCCACTAGTCTCAGCTCAAAT 59.431 45.455 0.00 0.00 0.00 2.32
2227 2623 5.355071 TGCATAATCTGATGGACTGTGTTTC 59.645 40.000 0.00 0.00 0.00 2.78
2239 2635 2.825532 ACTGTGTTTCCACTTGTGCTTT 59.174 40.909 0.00 0.00 42.34 3.51
2258 2654 6.652062 GTGCTTTTCAGAATTTGGATGGATTT 59.348 34.615 0.00 0.00 0.00 2.17
2263 2659 7.966246 TTCAGAATTTGGATGGATTTTTGTG 57.034 32.000 0.00 0.00 0.00 3.33
2276 2672 4.220602 GGATTTTTGTGGTTAGATGCCTGT 59.779 41.667 0.00 0.00 0.00 4.00
2288 2684 0.311790 ATGCCTGTTTGTGCTTGTCG 59.688 50.000 0.00 0.00 0.00 4.35
2291 2687 1.202245 GCCTGTTTGTGCTTGTCGAAA 60.202 47.619 0.00 0.00 0.00 3.46
2316 2741 3.414272 GCATTAGCTGCCCGTCTG 58.586 61.111 0.00 0.00 45.66 3.51
2403 2828 0.886563 GTTGCCTGCTTGCTCATCTT 59.113 50.000 0.00 0.00 0.00 2.40
2432 2857 3.377485 CCTCTGATGCAATTCAAGTGAGG 59.623 47.826 8.78 8.78 34.48 3.86
2437 2862 3.228188 TGCAATTCAAGTGAGGACCTT 57.772 42.857 0.00 0.00 0.00 3.50
2441 2866 4.392940 CAATTCAAGTGAGGACCTTGAGT 58.607 43.478 0.00 0.00 46.42 3.41
2458 2883 0.846693 AGTTTCTGCTCCCAAGTGGT 59.153 50.000 0.00 0.00 34.77 4.16
2462 2887 1.140312 TCTGCTCCCAAGTGGTCTTT 58.860 50.000 0.00 0.00 34.77 2.52
2468 2900 0.895559 CCCAAGTGGTCTTTGGAGCC 60.896 60.000 5.62 0.00 38.34 4.70
2469 2901 0.895559 CCAAGTGGTCTTTGGAGCCC 60.896 60.000 0.00 0.00 39.02 5.19
2470 2902 0.895559 CAAGTGGTCTTTGGAGCCCC 60.896 60.000 0.00 0.00 39.02 5.80
2471 2903 1.360393 AAGTGGTCTTTGGAGCCCCA 61.360 55.000 0.00 0.00 41.64 4.96
2472 2904 1.142688 AGTGGTCTTTGGAGCCCCAT 61.143 55.000 0.00 0.00 43.12 4.00
2474 2906 0.251742 TGGTCTTTGGAGCCCCATTG 60.252 55.000 0.00 0.00 43.12 2.82
2475 2907 0.039618 GGTCTTTGGAGCCCCATTGA 59.960 55.000 0.00 0.00 43.12 2.57
2478 2910 3.627237 GGTCTTTGGAGCCCCATTGATTA 60.627 47.826 0.00 0.00 43.12 1.75
2479 2911 4.023291 GTCTTTGGAGCCCCATTGATTAA 58.977 43.478 0.00 0.00 43.12 1.40
2480 2912 4.098501 GTCTTTGGAGCCCCATTGATTAAG 59.901 45.833 0.00 0.00 43.12 1.85
2481 2913 3.756082 TTGGAGCCCCATTGATTAAGT 57.244 42.857 0.00 0.00 43.12 2.24
2482 2914 3.017048 TGGAGCCCCATTGATTAAGTG 57.983 47.619 0.00 0.00 37.58 3.16
2483 2915 2.580322 TGGAGCCCCATTGATTAAGTGA 59.420 45.455 0.00 0.00 37.58 3.41
2484 2916 3.011144 TGGAGCCCCATTGATTAAGTGAA 59.989 43.478 0.00 0.00 37.58 3.18
2485 2917 3.633986 GGAGCCCCATTGATTAAGTGAAG 59.366 47.826 0.00 0.00 0.00 3.02
2486 2918 4.273318 GAGCCCCATTGATTAAGTGAAGT 58.727 43.478 0.00 0.00 0.00 3.01
2487 2919 5.437060 GAGCCCCATTGATTAAGTGAAGTA 58.563 41.667 0.00 0.00 0.00 2.24
2488 2920 5.826643 AGCCCCATTGATTAAGTGAAGTAA 58.173 37.500 0.00 0.00 0.00 2.24
2489 2921 6.435164 AGCCCCATTGATTAAGTGAAGTAAT 58.565 36.000 0.00 0.00 0.00 1.89
2490 2922 6.547510 AGCCCCATTGATTAAGTGAAGTAATC 59.452 38.462 0.00 0.00 38.11 1.75
2491 2923 6.547510 GCCCCATTGATTAAGTGAAGTAATCT 59.452 38.462 5.92 0.00 38.33 2.40
2492 2924 7.068716 GCCCCATTGATTAAGTGAAGTAATCTT 59.931 37.037 5.92 0.00 38.33 2.40
2493 2925 8.971073 CCCCATTGATTAAGTGAAGTAATCTTT 58.029 33.333 5.92 0.00 38.33 2.52
2498 2930 8.575649 TGATTAAGTGAAGTAATCTTTTCCCC 57.424 34.615 5.92 0.00 38.33 4.81
2499 2931 7.614192 TGATTAAGTGAAGTAATCTTTTCCCCC 59.386 37.037 5.92 0.00 38.33 5.40
2517 2949 4.884668 CCCCCGAAAAGAGTAGCATATA 57.115 45.455 0.00 0.00 0.00 0.86
2539 2971 9.684702 ATATAAGTTAGGAAAATACTCCCTCCA 57.315 33.333 0.00 0.00 35.95 3.86
2555 2987 5.442391 TCCCTCCATTTTTATTTACTCCGG 58.558 41.667 0.00 0.00 0.00 5.14
2697 3139 6.813649 TGTATGATTACAGTTTGAGCTGAGAC 59.186 38.462 0.00 0.00 39.62 3.36
2706 3148 0.891373 TGAGCTGAGACTAGTGGCAC 59.109 55.000 10.29 10.29 0.00 5.01
2717 3159 5.433526 AGACTAGTGGCACTGTTAAAAACA 58.566 37.500 29.65 5.58 39.52 2.83
2758 3200 4.269183 TGCGGATGGAGTTTGAAATATGT 58.731 39.130 0.00 0.00 0.00 2.29
3081 3523 8.523915 TGGATGCTTCATAAATTGTACTCAAT 57.476 30.769 1.64 0.00 44.94 2.57
3142 3584 6.308675 CAAGAATTGTTTGTTATTGCCATGC 58.691 36.000 0.00 0.00 42.34 4.06
3143 3585 5.549347 AGAATTGTTTGTTATTGCCATGCA 58.451 33.333 0.00 0.00 36.47 3.96
3144 3586 6.174760 AGAATTGTTTGTTATTGCCATGCAT 58.825 32.000 0.00 0.00 38.76 3.96
3159 3602 4.502604 GCCATGCATTAGCCATTCAGATTT 60.503 41.667 0.00 0.00 41.13 2.17
3172 3615 6.626623 GCCATTCAGATTTGCTTGTACTCAAT 60.627 38.462 0.00 0.00 32.82 2.57
3220 3664 8.317679 TGCATAAAACCATATGGCTTAAAGTTT 58.682 29.630 22.18 9.78 39.32 2.66
3260 3704 9.515226 TTGACCTTTAATAGTTAGAACTTGCAT 57.485 29.630 0.00 0.00 40.37 3.96
3262 3706 7.762382 ACCTTTAATAGTTAGAACTTGCATGC 58.238 34.615 11.82 11.82 40.37 4.06
3265 3709 9.793252 CTTTAATAGTTAGAACTTGCATGCATT 57.207 29.630 23.37 14.25 40.37 3.56
3269 3713 8.693542 ATAGTTAGAACTTGCATGCATTTTTC 57.306 30.769 23.37 21.67 40.37 2.29
3270 3714 6.752168 AGTTAGAACTTGCATGCATTTTTCT 58.248 32.000 28.09 28.09 35.21 2.52
3271 3715 7.212274 AGTTAGAACTTGCATGCATTTTTCTT 58.788 30.769 29.28 17.30 35.21 2.52
3284 3728 9.199982 CATGCATTTTTCTTTACAGTTCTGAAT 57.800 29.630 0.00 0.00 0.00 2.57
3361 3805 2.386661 AGAAGTTAGCGGATGGTGTG 57.613 50.000 0.00 0.00 0.00 3.82
3362 3806 1.623811 AGAAGTTAGCGGATGGTGTGT 59.376 47.619 0.00 0.00 0.00 3.72
3363 3807 1.732259 GAAGTTAGCGGATGGTGTGTG 59.268 52.381 0.00 0.00 0.00 3.82
3364 3808 0.973632 AGTTAGCGGATGGTGTGTGA 59.026 50.000 0.00 0.00 0.00 3.58
3420 3894 9.600646 GAAGTCTCTAAAGAAACTAAATTGCAC 57.399 33.333 0.00 0.00 31.93 4.57
3441 3915 4.396166 CACCGTAGAGAAAAATGGCTGATT 59.604 41.667 0.00 0.00 0.00 2.57
3442 3916 5.010282 ACCGTAGAGAAAAATGGCTGATTT 58.990 37.500 0.00 0.00 35.65 2.17
3492 3966 6.492007 CAGCATGTGATTAACAACTTCTCT 57.508 37.500 0.00 0.00 43.61 3.10
3499 3973 9.950496 ATGTGATTAACAACTTCTCTATCTTGT 57.050 29.630 0.00 0.00 43.61 3.16
3545 4019 9.705290 GTTTTAAACACCATCCAATCACTTTAT 57.295 29.630 2.62 0.00 0.00 1.40
3702 4177 5.860941 TTTGTCTGGTTCAAATTGCCTTA 57.139 34.783 0.00 0.00 31.17 2.69
3801 4277 3.782046 ACGATACTGCTGTATGTTGGTC 58.218 45.455 19.64 5.52 39.29 4.02
3810 4286 6.043854 TGCTGTATGTTGGTCTTGTACATA 57.956 37.500 0.00 0.00 34.55 2.29
3816 4292 5.710513 TGTTGGTCTTGTACATACGTACT 57.289 39.130 0.00 0.00 46.88 2.73
3822 4298 5.163723 GGTCTTGTACATACGTACTGTAGCA 60.164 44.000 14.26 12.69 46.88 3.49
3855 4331 0.397564 TGTCCTGCTGTGCTGATGAA 59.602 50.000 0.00 0.00 0.00 2.57
3901 4377 4.613031 GCTTTGAACTTTCAACGATAGCAC 59.387 41.667 16.14 0.00 45.99 4.40
3911 4387 7.438459 ACTTTCAACGATAGCACTCCATAATAC 59.562 37.037 0.00 0.00 42.67 1.89
3912 4388 6.399639 TCAACGATAGCACTCCATAATACA 57.600 37.500 0.00 0.00 42.67 2.29
3935 4411 7.050377 ACAATATCAGGAGTTTGATGGTGTAG 58.950 38.462 0.00 0.00 38.25 2.74
3940 4416 4.932200 CAGGAGTTTGATGGTGTAGAAGAC 59.068 45.833 0.00 0.00 0.00 3.01
3945 4421 4.801330 TTGATGGTGTAGAAGACGATGT 57.199 40.909 0.00 0.00 0.00 3.06
3946 4422 4.801330 TGATGGTGTAGAAGACGATGTT 57.199 40.909 0.00 0.00 0.00 2.71
3953 4429 6.202188 TGGTGTAGAAGACGATGTTTTTCTTC 59.798 38.462 2.92 2.92 43.78 2.87
3968 4444 9.846248 ATGTTTTTCTTCTATGCATGAAACTAC 57.154 29.630 10.16 10.86 0.00 2.73
3993 4469 3.740631 CAGCATGGTGATACTAGAGCA 57.259 47.619 20.20 0.00 0.00 4.26
3994 4470 4.268797 CAGCATGGTGATACTAGAGCAT 57.731 45.455 20.20 0.00 0.00 3.79
3997 4473 5.868258 CAGCATGGTGATACTAGAGCATTAG 59.132 44.000 20.20 0.00 0.00 1.73
3998 4474 5.541868 AGCATGGTGATACTAGAGCATTAGT 59.458 40.000 0.00 5.61 37.61 2.24
4010 4921 8.257830 ACTAGAGCATTAGTTTTTGAGCTTAC 57.742 34.615 0.00 0.00 29.72 2.34
4050 4961 9.643693 ATGATTCCTTCAAAACAAATCATGTAC 57.356 29.630 7.80 0.00 42.47 2.90
4085 4996 6.183361 ACTGAAGCTCATCCCCACAATATATT 60.183 38.462 0.00 0.00 0.00 1.28
4086 4997 6.005823 TGAAGCTCATCCCCACAATATATTG 58.994 40.000 21.42 21.42 43.26 1.90
4087 4998 5.848286 AGCTCATCCCCACAATATATTGA 57.152 39.130 28.13 9.03 40.14 2.57
4088 4999 6.398655 AGCTCATCCCCACAATATATTGAT 57.601 37.500 28.13 10.81 40.14 2.57
4089 5000 6.797707 AGCTCATCCCCACAATATATTGATT 58.202 36.000 28.13 7.52 40.14 2.57
4090 5001 7.932134 AGCTCATCCCCACAATATATTGATTA 58.068 34.615 28.13 11.34 40.14 1.75
4091 5002 8.563502 AGCTCATCCCCACAATATATTGATTAT 58.436 33.333 28.13 12.79 40.14 1.28
4101 5012 9.338291 CACAATATATTGATTATTGAGCTGCAC 57.662 33.333 28.13 0.00 40.14 4.57
4105 5016 2.009051 TGATTATTGAGCTGCACGTGG 58.991 47.619 18.88 2.10 0.00 4.94
4118 5029 3.028130 TGCACGTGGGAACTATATGAGA 58.972 45.455 18.88 0.00 0.00 3.27
4133 5044 9.632807 AACTATATGAGAATTCACTAAGCGATC 57.367 33.333 8.44 0.00 35.83 3.69
4135 5046 9.288124 CTATATGAGAATTCACTAAGCGATCTG 57.712 37.037 8.44 0.00 35.83 2.90
4136 5047 5.582689 TGAGAATTCACTAAGCGATCTGA 57.417 39.130 8.44 0.00 0.00 3.27
4137 5048 5.965922 TGAGAATTCACTAAGCGATCTGAA 58.034 37.500 8.44 0.00 0.00 3.02
4282 5196 5.882000 TGTCACATAACTGGATCTTTGATGG 59.118 40.000 0.00 0.00 0.00 3.51
4284 5198 3.879295 ACATAACTGGATCTTTGATGGCG 59.121 43.478 0.00 0.00 0.00 5.69
4311 5225 1.679977 AGGATGCATGCGTTGGCTT 60.680 52.632 14.88 0.00 40.82 4.35
4320 5234 0.941542 TGCGTTGGCTTTCAGTACAC 59.058 50.000 0.00 0.00 40.82 2.90
4374 5288 2.954989 TGGTTTGCTAACACATGCTTCA 59.045 40.909 13.00 0.00 35.92 3.02
4375 5289 3.382865 TGGTTTGCTAACACATGCTTCAA 59.617 39.130 13.00 0.00 35.92 2.69
4418 5332 5.933187 TTTTAATCTTTAGTGCTGTGCGA 57.067 34.783 0.00 0.00 0.00 5.10
4430 5344 1.746760 CTGTGCGACAGTTTTCAAGC 58.253 50.000 7.80 0.00 41.19 4.01
4431 5345 1.331756 CTGTGCGACAGTTTTCAAGCT 59.668 47.619 7.80 0.00 41.19 3.74
4433 5347 2.939756 TGTGCGACAGTTTTCAAGCTTA 59.060 40.909 0.00 0.00 0.00 3.09
4434 5348 3.563808 TGTGCGACAGTTTTCAAGCTTAT 59.436 39.130 0.00 0.00 0.00 1.73
4436 5350 5.411361 TGTGCGACAGTTTTCAAGCTTATAT 59.589 36.000 0.00 0.00 0.00 0.86
4437 5351 5.734498 GTGCGACAGTTTTCAAGCTTATATG 59.266 40.000 0.00 0.00 0.00 1.78
4456 5381 6.947644 ATATGATAAAATGTGTGCTGCTCA 57.052 33.333 0.00 0.00 0.00 4.26
4467 5392 2.036217 TGTGCTGCTCAAAATTTCCAGG 59.964 45.455 1.33 0.00 0.00 4.45
4470 5395 0.975887 TGCTCAAAATTTCCAGGGGC 59.024 50.000 0.00 0.00 0.00 5.80
4480 5405 2.414250 TTCCAGGGGCAAAAGGAAAT 57.586 45.000 0.00 0.00 37.22 2.17
4491 5416 4.498241 GCAAAAGGAAATCAAGGGATCAC 58.502 43.478 0.00 0.00 31.88 3.06
4493 5418 5.337813 GCAAAAGGAAATCAAGGGATCACAT 60.338 40.000 0.00 0.00 31.88 3.21
4508 5433 3.808466 TCACATTAAGAGCGAGCAGAT 57.192 42.857 0.00 0.00 0.00 2.90
4509 5434 4.128925 TCACATTAAGAGCGAGCAGATT 57.871 40.909 0.00 0.00 0.00 2.40
4518 5443 2.600867 GAGCGAGCAGATTGTACAAGAC 59.399 50.000 14.65 10.46 0.00 3.01
4522 5447 1.276421 AGCAGATTGTACAAGACCGCT 59.724 47.619 14.65 15.32 0.00 5.52
4529 5454 1.411246 TGTACAAGACCGCTCAACTGT 59.589 47.619 0.00 0.00 0.00 3.55
4534 5459 0.464036 AGACCGCTCAACTGTGAACA 59.536 50.000 0.00 0.00 31.88 3.18
4565 5490 2.474526 GCATGGTGAATTCTGAACGACG 60.475 50.000 7.05 0.00 0.00 5.12
4585 5510 3.210857 CGCAAGTCCCGAAAGAAGA 57.789 52.632 0.00 0.00 0.00 2.87
4587 5512 1.157585 GCAAGTCCCGAAAGAAGACC 58.842 55.000 0.00 0.00 35.58 3.85
4592 5517 1.042229 TCCCGAAAGAAGACCGTTGA 58.958 50.000 0.00 0.00 0.00 3.18
4611 5536 6.016360 CCGTTGAGGAATAATGATGCCATTTA 60.016 38.462 0.00 0.00 45.00 1.40
4652 5581 3.325293 TGGACTCAGACTTGCAATCTC 57.675 47.619 0.00 0.00 0.00 2.75
4662 5591 1.802960 CTTGCAATCTCGCTGACTTGT 59.197 47.619 0.00 0.00 0.00 3.16
4663 5592 1.882912 TGCAATCTCGCTGACTTGTT 58.117 45.000 0.00 0.00 0.00 2.83
4716 5645 3.491652 GCTTCCCAGTCGCTTCGC 61.492 66.667 0.00 0.00 0.00 4.70
4765 5694 8.487176 TCGATTGTACGATGATGATGTAAAATG 58.513 33.333 0.00 0.00 37.37 2.32
4782 5711 2.741433 TGGGACAGTTAGTGAGCGT 58.259 52.632 0.00 0.00 0.00 5.07
4785 5714 1.419374 GGACAGTTAGTGAGCGTGTG 58.581 55.000 0.00 0.00 0.00 3.82
4788 5717 1.139989 CAGTTAGTGAGCGTGTGGTG 58.860 55.000 0.00 0.00 0.00 4.17
4789 5718 0.600255 AGTTAGTGAGCGTGTGGTGC 60.600 55.000 0.00 0.00 0.00 5.01
4794 5723 2.052237 GAGCGTGTGGTGCGTTTG 60.052 61.111 0.00 0.00 37.44 2.93
4798 5727 1.492319 GCGTGTGGTGCGTTTGTCTA 61.492 55.000 0.00 0.00 0.00 2.59
4799 5728 0.931702 CGTGTGGTGCGTTTGTCTAA 59.068 50.000 0.00 0.00 0.00 2.10
4801 5730 2.411031 CGTGTGGTGCGTTTGTCTAATC 60.411 50.000 0.00 0.00 0.00 1.75
4809 5738 5.147162 GTGCGTTTGTCTAATCTTTTCTGG 58.853 41.667 0.00 0.00 0.00 3.86
4842 5771 4.485163 GCGGTCTTGTTTATGAGCAAATT 58.515 39.130 0.00 0.00 0.00 1.82
4844 5773 4.858692 CGGTCTTGTTTATGAGCAAATTGG 59.141 41.667 0.00 0.00 0.00 3.16
4854 6480 4.603989 TGAGCAAATTGGCAGATTTCAA 57.396 36.364 7.75 0.00 35.83 2.69
4858 6484 6.148150 TGAGCAAATTGGCAGATTTCAATTTC 59.852 34.615 7.75 6.84 45.88 2.17
4893 6519 3.827008 CTTCTATAGCAAGTGGGCAGA 57.173 47.619 0.00 0.00 35.83 4.26
4895 6521 4.712476 CTTCTATAGCAAGTGGGCAGATT 58.288 43.478 0.00 0.00 35.83 2.40
4911 6631 7.013274 GTGGGCAGATTTCAAATGCTAGTATTA 59.987 37.037 6.48 0.00 39.88 0.98
4931 6651 3.994853 GCAGGGTGCAACAAGGGC 61.995 66.667 3.06 0.00 44.26 5.19
4936 6656 2.328099 GGTGCAACAAGGGCGAGAG 61.328 63.158 0.00 0.00 39.98 3.20
4938 6658 0.884704 GTGCAACAAGGGCGAGAGAA 60.885 55.000 0.00 0.00 36.32 2.87
4940 6660 1.916697 GCAACAAGGGCGAGAGAAGC 61.917 60.000 0.00 0.00 0.00 3.86
4972 6692 3.273434 TGCATGAACATTCAGGAGCTAC 58.727 45.455 10.30 0.00 41.15 3.58
5006 6733 2.036256 AGGGCGCATTTTGGAGCT 59.964 55.556 10.83 0.00 33.80 4.09
5014 6741 2.540361 CGCATTTTGGAGCTGATAGTGC 60.540 50.000 0.00 0.00 0.00 4.40
5022 6760 2.655364 CTGATAGTGCCGGCGTCG 60.655 66.667 23.90 0.29 0.00 5.12
5066 6804 4.191544 GCTTGTGGCTCCTTTTTCTTTTT 58.808 39.130 0.00 0.00 38.06 1.94
5087 6825 5.389859 TTTGAATACACCAAGCTCCATTG 57.610 39.130 0.00 0.00 0.00 2.82
5092 6830 0.037975 CACCAAGCTCCATTGTTGGC 60.038 55.000 0.00 0.00 43.99 4.52
5144 6882 6.267471 AGCAATCTTAATTGAAAACCTGGTCA 59.733 34.615 0.00 0.00 44.25 4.02
5157 6895 3.889520 CCTGGTCAGGGTAAGAACTAC 57.110 52.381 9.08 0.00 44.87 2.73
5163 6901 4.282703 GGTCAGGGTAAGAACTACAAGTGA 59.717 45.833 0.00 0.00 31.45 3.41
5181 6919 3.707611 AGTGAATAACGTGGGTATGGCTA 59.292 43.478 0.00 0.00 0.00 3.93
5228 6967 2.593346 ATCGCTCGATTTCTTGCTCT 57.407 45.000 0.00 0.00 0.00 4.09
5231 6970 0.926846 GCTCGATTTCTTGCTCTCGG 59.073 55.000 0.00 0.00 0.00 4.63
5243 6982 3.057547 CTCTCGGAGCCTGGTGTCG 62.058 68.421 0.00 0.00 0.00 4.35
5310 7049 8.707839 ACAAAACTTTGAAAACACACAAGTATG 58.292 29.630 9.12 0.00 40.55 2.39
5558 7325 7.822161 TTCATCCAACCTTTCATGTATATGG 57.178 36.000 0.00 0.00 34.97 2.74
5561 7328 8.668653 TCATCCAACCTTTCATGTATATGGTAT 58.331 33.333 0.00 0.00 34.97 2.73
5562 7329 8.950210 CATCCAACCTTTCATGTATATGGTATC 58.050 37.037 0.00 0.00 34.97 2.24
5594 7362 7.820872 TCTTAATTTACTTACCTTCTGAACCGG 59.179 37.037 0.00 0.00 0.00 5.28
5597 7365 3.851458 ACTTACCTTCTGAACCGGTTT 57.149 42.857 23.22 5.92 32.36 3.27
5603 7371 2.949644 CCTTCTGAACCGGTTTCACTTT 59.050 45.455 23.22 0.00 39.45 2.66
5663 7432 8.184192 GGTAATTCACGTCAGAATTTGATGAAT 58.816 33.333 16.27 11.78 43.67 2.57
5712 7481 5.496133 TGATAGGTAAGTCACGAGCTAAC 57.504 43.478 0.00 0.00 0.00 2.34
5713 7482 5.191426 TGATAGGTAAGTCACGAGCTAACT 58.809 41.667 0.00 0.00 0.00 2.24
5714 7483 6.351711 TGATAGGTAAGTCACGAGCTAACTA 58.648 40.000 0.00 0.00 0.00 2.24
5715 7484 4.961435 AGGTAAGTCACGAGCTAACTAC 57.039 45.455 0.00 0.00 0.00 2.73
5811 7581 7.807977 AAAAGGATATCTCGTACGTTACCTA 57.192 36.000 16.05 2.12 0.00 3.08
5837 7608 3.343617 GCCTATAGCCAGTTTTCACACA 58.656 45.455 0.00 0.00 34.35 3.72
5842 7613 3.213206 AGCCAGTTTTCACACAGATGA 57.787 42.857 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 8.270111 CGCACGGTTTAAAAGATAAAACATTTT 58.730 29.630 0.00 0.00 37.33 1.82
19 20 7.435784 ACGCACGGTTTAAAAGATAAAACATTT 59.564 29.630 0.00 0.00 37.33 2.32
20 21 6.919115 ACGCACGGTTTAAAAGATAAAACATT 59.081 30.769 0.00 0.00 37.33 2.71
21 22 6.440436 ACGCACGGTTTAAAAGATAAAACAT 58.560 32.000 0.00 0.00 37.33 2.71
22 23 5.819059 ACGCACGGTTTAAAAGATAAAACA 58.181 33.333 0.00 0.00 37.33 2.83
23 24 5.340403 GGACGCACGGTTTAAAAGATAAAAC 59.660 40.000 0.00 0.00 35.34 2.43
24 25 5.008415 TGGACGCACGGTTTAAAAGATAAAA 59.992 36.000 0.00 0.00 0.00 1.52
25 26 4.514441 TGGACGCACGGTTTAAAAGATAAA 59.486 37.500 0.00 0.00 0.00 1.40
26 27 4.063689 TGGACGCACGGTTTAAAAGATAA 58.936 39.130 0.00 0.00 0.00 1.75
27 28 3.661944 TGGACGCACGGTTTAAAAGATA 58.338 40.909 0.00 0.00 0.00 1.98
28 29 2.496111 TGGACGCACGGTTTAAAAGAT 58.504 42.857 0.00 0.00 0.00 2.40
29 30 1.950828 TGGACGCACGGTTTAAAAGA 58.049 45.000 0.00 0.00 0.00 2.52
30 31 2.759538 TTGGACGCACGGTTTAAAAG 57.240 45.000 0.00 0.00 0.00 2.27
31 32 3.315749 AGATTTGGACGCACGGTTTAAAA 59.684 39.130 0.00 0.00 0.00 1.52
32 33 2.879646 AGATTTGGACGCACGGTTTAAA 59.120 40.909 0.00 0.00 0.00 1.52
33 34 2.481185 GAGATTTGGACGCACGGTTTAA 59.519 45.455 0.00 0.00 0.00 1.52
34 35 2.070783 GAGATTTGGACGCACGGTTTA 58.929 47.619 0.00 0.00 0.00 2.01
35 36 0.872388 GAGATTTGGACGCACGGTTT 59.128 50.000 0.00 0.00 0.00 3.27
36 37 1.289109 CGAGATTTGGACGCACGGTT 61.289 55.000 0.00 0.00 0.00 4.44
37 38 1.736645 CGAGATTTGGACGCACGGT 60.737 57.895 0.00 0.00 0.00 4.83
38 39 1.011968 TTCGAGATTTGGACGCACGG 61.012 55.000 0.00 0.00 0.00 4.94
39 40 0.093026 GTTCGAGATTTGGACGCACG 59.907 55.000 0.00 0.00 0.00 5.34
40 41 0.442699 GGTTCGAGATTTGGACGCAC 59.557 55.000 0.00 0.00 0.00 5.34
41 42 1.011968 CGGTTCGAGATTTGGACGCA 61.012 55.000 0.00 0.00 0.00 5.24
42 43 1.012486 ACGGTTCGAGATTTGGACGC 61.012 55.000 0.00 0.00 0.00 5.19
43 44 1.425412 AACGGTTCGAGATTTGGACG 58.575 50.000 0.00 0.00 0.00 4.79
44 45 3.249080 TGAAAACGGTTCGAGATTTGGAC 59.751 43.478 0.00 0.00 0.00 4.02
45 46 3.468770 TGAAAACGGTTCGAGATTTGGA 58.531 40.909 0.00 0.00 0.00 3.53
46 47 3.889196 TGAAAACGGTTCGAGATTTGG 57.111 42.857 0.00 0.00 0.00 3.28
47 48 4.081761 CGATGAAAACGGTTCGAGATTTG 58.918 43.478 0.00 0.00 33.59 2.32
48 49 3.744426 ACGATGAAAACGGTTCGAGATTT 59.256 39.130 6.21 0.00 35.94 2.17
49 50 3.323243 ACGATGAAAACGGTTCGAGATT 58.677 40.909 6.21 0.00 35.94 2.40
50 51 2.955614 ACGATGAAAACGGTTCGAGAT 58.044 42.857 6.21 0.00 35.94 2.75
51 52 2.427232 ACGATGAAAACGGTTCGAGA 57.573 45.000 6.21 0.00 35.94 4.04
52 53 2.411031 CCAACGATGAAAACGGTTCGAG 60.411 50.000 6.21 0.00 35.94 4.04
53 54 1.527736 CCAACGATGAAAACGGTTCGA 59.472 47.619 6.21 0.00 35.94 3.71
54 55 1.527736 TCCAACGATGAAAACGGTTCG 59.472 47.619 0.00 0.00 35.94 3.95
55 56 3.824414 ATCCAACGATGAAAACGGTTC 57.176 42.857 0.00 0.00 35.94 3.62
56 57 4.277423 AGAAATCCAACGATGAAAACGGTT 59.723 37.500 0.00 0.00 35.94 4.44
57 58 3.818773 AGAAATCCAACGATGAAAACGGT 59.181 39.130 0.00 0.00 35.94 4.83
58 59 4.403453 GAGAAATCCAACGATGAAAACGG 58.597 43.478 0.00 0.00 35.94 4.44
59 60 4.081761 CGAGAAATCCAACGATGAAAACG 58.918 43.478 0.00 0.00 38.45 3.60
60 61 3.846335 GCGAGAAATCCAACGATGAAAAC 59.154 43.478 0.00 0.00 0.00 2.43
61 62 3.424302 CGCGAGAAATCCAACGATGAAAA 60.424 43.478 0.00 0.00 0.00 2.29
62 63 2.093625 CGCGAGAAATCCAACGATGAAA 59.906 45.455 0.00 0.00 0.00 2.69
63 64 1.658596 CGCGAGAAATCCAACGATGAA 59.341 47.619 0.00 0.00 0.00 2.57
64 65 1.277326 CGCGAGAAATCCAACGATGA 58.723 50.000 0.00 0.00 0.00 2.92
65 66 0.999406 ACGCGAGAAATCCAACGATG 59.001 50.000 15.93 0.00 0.00 3.84
66 67 1.278238 GACGCGAGAAATCCAACGAT 58.722 50.000 15.93 0.00 0.00 3.73
67 68 1.068832 CGACGCGAGAAATCCAACGA 61.069 55.000 15.93 0.00 0.00 3.85
68 69 1.068832 TCGACGCGAGAAATCCAACG 61.069 55.000 15.93 2.68 0.00 4.10
69 70 2.733127 TCGACGCGAGAAATCCAAC 58.267 52.632 15.93 0.00 0.00 3.77
79 80 1.983605 GTTTTGAAGATCTCGACGCGA 59.016 47.619 15.93 0.00 0.00 5.87
80 81 1.986378 AGTTTTGAAGATCTCGACGCG 59.014 47.619 3.53 3.53 0.00 6.01
81 82 4.413087 TCTAGTTTTGAAGATCTCGACGC 58.587 43.478 0.00 0.00 0.00 5.19
82 83 5.683743 GGATCTAGTTTTGAAGATCTCGACG 59.316 44.000 11.05 0.00 37.77 5.12
83 84 5.980715 GGGATCTAGTTTTGAAGATCTCGAC 59.019 44.000 11.05 0.00 37.77 4.20
84 85 5.656859 TGGGATCTAGTTTTGAAGATCTCGA 59.343 40.000 11.05 0.00 40.21 4.04
85 86 5.907207 TGGGATCTAGTTTTGAAGATCTCG 58.093 41.667 11.05 0.00 40.21 4.04
86 87 7.278875 ACATGGGATCTAGTTTTGAAGATCTC 58.721 38.462 11.05 8.38 38.41 2.75
87 88 7.205515 ACATGGGATCTAGTTTTGAAGATCT 57.794 36.000 11.05 0.00 37.77 2.75
88 89 7.554118 TCAACATGGGATCTAGTTTTGAAGATC 59.446 37.037 0.00 4.15 37.15 2.75
89 90 7.405292 TCAACATGGGATCTAGTTTTGAAGAT 58.595 34.615 0.00 0.00 0.00 2.40
90 91 6.778821 TCAACATGGGATCTAGTTTTGAAGA 58.221 36.000 0.00 0.00 0.00 2.87
91 92 7.636150 ATCAACATGGGATCTAGTTTTGAAG 57.364 36.000 0.00 0.00 0.00 3.02
92 93 7.775093 CCTATCAACATGGGATCTAGTTTTGAA 59.225 37.037 5.52 0.00 32.06 2.69
93 94 7.092444 ACCTATCAACATGGGATCTAGTTTTGA 60.092 37.037 5.52 0.00 34.16 2.69
94 95 7.056635 ACCTATCAACATGGGATCTAGTTTTG 58.943 38.462 5.52 0.00 34.16 2.44
95 96 7.213178 ACCTATCAACATGGGATCTAGTTTT 57.787 36.000 5.52 0.00 34.16 2.43
96 97 6.831664 ACCTATCAACATGGGATCTAGTTT 57.168 37.500 5.52 0.00 34.16 2.66
97 98 6.831664 AACCTATCAACATGGGATCTAGTT 57.168 37.500 5.52 5.97 34.16 2.24
98 99 6.831664 AAACCTATCAACATGGGATCTAGT 57.168 37.500 5.52 0.98 34.16 2.57
99 100 7.282585 TCAAAACCTATCAACATGGGATCTAG 58.717 38.462 5.52 0.40 34.16 2.43
100 101 7.206789 TCAAAACCTATCAACATGGGATCTA 57.793 36.000 5.52 0.00 34.16 1.98
101 102 6.078456 TCAAAACCTATCAACATGGGATCT 57.922 37.500 5.52 0.00 34.16 2.75
102 103 6.547141 TCATCAAAACCTATCAACATGGGATC 59.453 38.462 5.52 0.00 34.16 3.36
103 104 6.434302 TCATCAAAACCTATCAACATGGGAT 58.566 36.000 0.00 2.37 34.16 3.85
104 105 5.825532 TCATCAAAACCTATCAACATGGGA 58.174 37.500 0.00 0.00 34.16 4.37
105 106 6.153340 AGTTCATCAAAACCTATCAACATGGG 59.847 38.462 0.00 0.00 36.68 4.00
106 107 7.161773 AGTTCATCAAAACCTATCAACATGG 57.838 36.000 0.00 0.00 0.00 3.66
107 108 9.480053 AAAAGTTCATCAAAACCTATCAACATG 57.520 29.630 0.00 0.00 0.00 3.21
108 109 9.696917 GAAAAGTTCATCAAAACCTATCAACAT 57.303 29.630 0.00 0.00 0.00 2.71
109 110 8.912988 AGAAAAGTTCATCAAAACCTATCAACA 58.087 29.630 0.00 0.00 0.00 3.33
110 111 9.750125 AAGAAAAGTTCATCAAAACCTATCAAC 57.250 29.630 0.00 0.00 0.00 3.18
115 116 9.581099 GTGAAAAGAAAAGTTCATCAAAACCTA 57.419 29.630 0.00 0.00 36.23 3.08
116 117 7.275560 CGTGAAAAGAAAAGTTCATCAAAACCT 59.724 33.333 0.00 0.00 36.23 3.50
117 118 7.274686 TCGTGAAAAGAAAAGTTCATCAAAACC 59.725 33.333 0.00 0.00 36.23 3.27
118 119 8.168681 TCGTGAAAAGAAAAGTTCATCAAAAC 57.831 30.769 0.00 0.00 36.23 2.43
119 120 8.749841 TTCGTGAAAAGAAAAGTTCATCAAAA 57.250 26.923 0.00 0.00 36.23 2.44
120 121 8.749841 TTTCGTGAAAAGAAAAGTTCATCAAA 57.250 26.923 0.00 0.00 41.21 2.69
121 122 8.749841 TTTTCGTGAAAAGAAAAGTTCATCAA 57.250 26.923 3.74 0.00 46.52 2.57
158 159 0.462375 GTGCTCCCGGTTTGGTTTTT 59.538 50.000 0.00 0.00 35.15 1.94
159 160 1.730451 CGTGCTCCCGGTTTGGTTTT 61.730 55.000 0.00 0.00 35.15 2.43
160 161 2.190841 CGTGCTCCCGGTTTGGTTT 61.191 57.895 0.00 0.00 35.15 3.27
161 162 2.593436 CGTGCTCCCGGTTTGGTT 60.593 61.111 0.00 0.00 35.15 3.67
162 163 3.530910 CTCGTGCTCCCGGTTTGGT 62.531 63.158 0.00 0.00 35.15 3.67
163 164 2.742372 CTCGTGCTCCCGGTTTGG 60.742 66.667 0.00 0.00 37.55 3.28
164 165 1.164041 AAACTCGTGCTCCCGGTTTG 61.164 55.000 0.00 0.00 33.27 2.93
165 166 0.464916 AAAACTCGTGCTCCCGGTTT 60.465 50.000 0.00 0.00 34.78 3.27
166 167 0.464916 AAAAACTCGTGCTCCCGGTT 60.465 50.000 0.00 0.00 0.00 4.44
167 168 1.147600 AAAAACTCGTGCTCCCGGT 59.852 52.632 0.00 0.00 0.00 5.28
168 169 4.058797 AAAAACTCGTGCTCCCGG 57.941 55.556 0.00 0.00 0.00 5.73
182 183 0.664224 GGCACGTCGGAAAGGAAAAA 59.336 50.000 0.00 0.00 0.00 1.94
183 184 0.179040 AGGCACGTCGGAAAGGAAAA 60.179 50.000 0.00 0.00 0.00 2.29
184 185 0.680618 TAGGCACGTCGGAAAGGAAA 59.319 50.000 0.00 0.00 0.00 3.13
185 186 0.899720 ATAGGCACGTCGGAAAGGAA 59.100 50.000 0.00 0.00 0.00 3.36
186 187 0.458669 GATAGGCACGTCGGAAAGGA 59.541 55.000 0.00 0.00 0.00 3.36
187 188 0.870307 CGATAGGCACGTCGGAAAGG 60.870 60.000 0.00 0.00 37.61 3.11
188 189 0.179145 ACGATAGGCACGTCGGAAAG 60.179 55.000 10.16 0.00 43.39 2.62
189 190 0.457166 CACGATAGGCACGTCGGAAA 60.457 55.000 10.16 0.00 43.39 3.13
190 191 1.138036 CACGATAGGCACGTCGGAA 59.862 57.895 10.16 0.00 43.39 4.30
191 192 2.767445 CCACGATAGGCACGTCGGA 61.767 63.158 10.16 0.00 43.39 4.55
192 193 2.274232 TTCCACGATAGGCACGTCGG 62.274 60.000 10.16 10.60 43.39 4.79
193 194 0.457166 TTTCCACGATAGGCACGTCG 60.457 55.000 0.00 4.95 44.31 5.12
194 195 1.717194 TTTTCCACGATAGGCACGTC 58.283 50.000 0.00 0.00 42.07 4.34
195 196 2.172851 TTTTTCCACGATAGGCACGT 57.827 45.000 0.00 0.00 44.83 4.49
277 287 3.371097 TTCCGCGAGAGGCATGGTC 62.371 63.158 8.23 0.00 43.84 4.02
340 352 4.574828 CCGTGACTCTCAGAAAAGGAAAAA 59.425 41.667 0.00 0.00 0.00 1.94
341 353 4.127171 CCGTGACTCTCAGAAAAGGAAAA 58.873 43.478 0.00 0.00 0.00 2.29
342 354 3.728845 CCGTGACTCTCAGAAAAGGAAA 58.271 45.455 0.00 0.00 0.00 3.13
343 355 2.548067 GCCGTGACTCTCAGAAAAGGAA 60.548 50.000 0.00 0.00 0.00 3.36
344 356 1.000955 GCCGTGACTCTCAGAAAAGGA 59.999 52.381 0.00 0.00 0.00 3.36
345 357 1.433534 GCCGTGACTCTCAGAAAAGG 58.566 55.000 0.00 0.00 0.00 3.11
346 358 1.433534 GGCCGTGACTCTCAGAAAAG 58.566 55.000 0.00 0.00 0.00 2.27
347 359 0.319555 CGGCCGTGACTCTCAGAAAA 60.320 55.000 19.50 0.00 0.00 2.29
348 360 1.289066 CGGCCGTGACTCTCAGAAA 59.711 57.895 19.50 0.00 0.00 2.52
349 361 1.901948 ACGGCCGTGACTCTCAGAA 60.902 57.895 33.75 0.00 0.00 3.02
350 362 2.282251 ACGGCCGTGACTCTCAGA 60.282 61.111 33.75 0.00 0.00 3.27
363 375 1.576421 CTTTCACAAGAGGCACGGC 59.424 57.895 0.00 0.00 30.57 5.68
384 396 2.002586 CATTCTGAGTAGGCACGGTTG 58.997 52.381 0.00 0.00 0.00 3.77
497 649 0.034767 TCTCCTTCCGCGAGAGGTAA 60.035 55.000 21.78 11.91 32.58 2.85
552 835 0.951558 TTCACCTTTTCTGCTTCCGC 59.048 50.000 0.00 0.00 0.00 5.54
553 836 2.618709 ACTTTCACCTTTTCTGCTTCCG 59.381 45.455 0.00 0.00 0.00 4.30
554 837 5.767816 TTACTTTCACCTTTTCTGCTTCC 57.232 39.130 0.00 0.00 0.00 3.46
555 838 6.475727 GGTTTTACTTTCACCTTTTCTGCTTC 59.524 38.462 0.00 0.00 0.00 3.86
556 839 6.071051 TGGTTTTACTTTCACCTTTTCTGCTT 60.071 34.615 0.00 0.00 0.00 3.91
557 840 5.420739 TGGTTTTACTTTCACCTTTTCTGCT 59.579 36.000 0.00 0.00 0.00 4.24
558 841 5.656480 TGGTTTTACTTTCACCTTTTCTGC 58.344 37.500 0.00 0.00 0.00 4.26
559 842 6.200854 GCATGGTTTTACTTTCACCTTTTCTG 59.799 38.462 0.00 0.00 0.00 3.02
560 843 6.280643 GCATGGTTTTACTTTCACCTTTTCT 58.719 36.000 0.00 0.00 0.00 2.52
561 844 5.465390 GGCATGGTTTTACTTTCACCTTTTC 59.535 40.000 0.00 0.00 0.00 2.29
562 845 5.130311 AGGCATGGTTTTACTTTCACCTTTT 59.870 36.000 0.00 0.00 0.00 2.27
563 846 4.653801 AGGCATGGTTTTACTTTCACCTTT 59.346 37.500 0.00 0.00 0.00 3.11
564 847 4.223144 AGGCATGGTTTTACTTTCACCTT 58.777 39.130 0.00 0.00 0.00 3.50
565 848 3.826729 GAGGCATGGTTTTACTTTCACCT 59.173 43.478 0.00 0.00 0.00 4.00
566 849 3.826729 AGAGGCATGGTTTTACTTTCACC 59.173 43.478 0.00 0.00 0.00 4.02
574 857 0.742990 CCGCGAGAGGCATGGTTTTA 60.743 55.000 8.23 0.00 43.84 1.52
662 971 7.816640 TCATCGGTCTTTCTTAAATTTTGGAG 58.183 34.615 0.00 0.00 0.00 3.86
670 979 6.260493 TCGGTTTTTCATCGGTCTTTCTTAAA 59.740 34.615 0.00 0.00 0.00 1.52
684 993 3.948196 TTCGACGTTTCGGTTTTTCAT 57.052 38.095 0.00 0.00 45.90 2.57
712 1030 4.569801 TTTGTTTTCGGCTTTTTGAACG 57.430 36.364 0.00 0.00 0.00 3.95
713 1031 5.963004 GGATTTTGTTTTCGGCTTTTTGAAC 59.037 36.000 0.00 0.00 0.00 3.18
714 1032 5.220491 CGGATTTTGTTTTCGGCTTTTTGAA 60.220 36.000 0.00 0.00 0.00 2.69
715 1033 4.268884 CGGATTTTGTTTTCGGCTTTTTGA 59.731 37.500 0.00 0.00 0.00 2.69
745 1100 4.702081 GTGTCGCGCTCTGGACGT 62.702 66.667 5.56 0.00 35.95 4.34
791 1146 1.089920 GGCAGACAACGATCAGCATT 58.910 50.000 0.00 0.00 33.02 3.56
857 1212 5.636543 CCAAACAAAACTACCTAGTCCGTAG 59.363 44.000 3.82 3.82 39.32 3.51
858 1213 5.511202 CCCAAACAAAACTACCTAGTCCGTA 60.511 44.000 0.00 0.00 34.99 4.02
859 1214 4.383173 CCAAACAAAACTACCTAGTCCGT 58.617 43.478 0.00 0.00 34.99 4.69
860 1215 3.749609 CCCAAACAAAACTACCTAGTCCG 59.250 47.826 0.00 0.00 34.99 4.79
861 1216 3.504906 GCCCAAACAAAACTACCTAGTCC 59.495 47.826 0.00 0.00 34.99 3.85
862 1217 4.395625 AGCCCAAACAAAACTACCTAGTC 58.604 43.478 0.00 0.00 34.99 2.59
863 1218 4.395625 GAGCCCAAACAAAACTACCTAGT 58.604 43.478 0.00 0.00 38.39 2.57
864 1219 3.756963 GGAGCCCAAACAAAACTACCTAG 59.243 47.826 0.00 0.00 0.00 3.02
865 1220 3.499021 GGGAGCCCAAACAAAACTACCTA 60.499 47.826 0.00 0.00 35.81 3.08
866 1221 2.594131 GGAGCCCAAACAAAACTACCT 58.406 47.619 0.00 0.00 0.00 3.08
867 1222 1.616865 GGGAGCCCAAACAAAACTACC 59.383 52.381 0.00 0.00 35.81 3.18
904 1259 2.050442 GCGGTTTGTTTGGGCTCG 60.050 61.111 0.00 0.00 0.00 5.03
963 1318 1.463674 CGGGAGATGGTTTTTCTGGG 58.536 55.000 0.00 0.00 0.00 4.45
989 1344 2.955660 GGGAGATGGTTGTGTTGTTCAA 59.044 45.455 0.00 0.00 0.00 2.69
995 1350 2.290071 CCTAACGGGAGATGGTTGTGTT 60.290 50.000 0.00 0.00 37.23 3.32
1073 1428 2.367512 CAGGGAGGAGGGAAGGGG 60.368 72.222 0.00 0.00 0.00 4.79
1306 1690 4.332543 AAGGAGCGGTGGGGAGGA 62.333 66.667 0.00 0.00 0.00 3.71
1386 1770 0.895530 CCTCTCTACTCAAACCGGCA 59.104 55.000 0.00 0.00 0.00 5.69
1396 1780 5.189934 CCCCTCAAATTTACACCTCTCTACT 59.810 44.000 0.00 0.00 0.00 2.57
1427 1811 5.418524 CCCATTATCCAAGTTGTTCACATGA 59.581 40.000 0.00 0.00 0.00 3.07
1495 1879 5.049405 ACCTTCGAATTCAACTTCATGTGAC 60.049 40.000 6.22 0.00 0.00 3.67
1558 1942 3.169908 GGCCTTGATAACCTTTTTCCCA 58.830 45.455 0.00 0.00 0.00 4.37
1576 1960 1.114627 GACCATCCAGGATTTTGGCC 58.885 55.000 7.43 0.00 41.22 5.36
1766 2150 3.705604 CCTTTGAAAAATGCACTGACGT 58.294 40.909 0.00 0.00 0.00 4.34
1785 2169 5.999044 AGAGATGACATACAAATTCAGCCT 58.001 37.500 0.00 0.00 0.00 4.58
1828 2213 6.702282 GGACTAGTGGCAGTGTCTATAAATTC 59.298 42.308 18.06 0.00 0.00 2.17
2227 2623 4.508861 CCAAATTCTGAAAAGCACAAGTGG 59.491 41.667 2.00 0.00 0.00 4.00
2239 2635 6.935771 CCACAAAAATCCATCCAAATTCTGAA 59.064 34.615 0.00 0.00 0.00 3.02
2258 2654 3.957497 ACAAACAGGCATCTAACCACAAA 59.043 39.130 0.00 0.00 0.00 2.83
2263 2659 2.162681 AGCACAAACAGGCATCTAACC 58.837 47.619 0.00 0.00 0.00 2.85
2276 2672 5.174761 GCAATGTAATTTCGACAAGCACAAA 59.825 36.000 0.00 0.00 31.22 2.83
2316 2741 1.818642 AATCCTGTTCTGAGCTGCAC 58.181 50.000 1.02 0.00 0.00 4.57
2403 2828 1.838112 ATTGCATCAGAGGCGGAAAA 58.162 45.000 1.98 0.00 0.00 2.29
2432 2857 1.072331 TGGGAGCAGAAACTCAAGGTC 59.928 52.381 0.00 0.00 38.50 3.85
2437 2862 1.202806 CCACTTGGGAGCAGAAACTCA 60.203 52.381 0.00 0.00 40.01 3.41
2441 2866 1.140312 AGACCACTTGGGAGCAGAAA 58.860 50.000 0.00 0.00 41.15 2.52
2472 2904 9.020731 GGGGAAAAGATTACTTCACTTAATCAA 57.979 33.333 5.21 0.00 38.09 2.57
2474 2906 7.997482 GGGGGAAAAGATTACTTCACTTAATC 58.003 38.462 0.00 0.00 36.55 1.75
2475 2907 7.956328 GGGGGAAAAGATTACTTCACTTAAT 57.044 36.000 0.00 0.00 35.05 1.40
2496 2928 3.771577 ATATGCTACTCTTTTCGGGGG 57.228 47.619 0.00 0.00 0.00 5.40
2497 2929 5.855045 ACTTATATGCTACTCTTTTCGGGG 58.145 41.667 0.00 0.00 0.00 5.73
2498 2930 7.599245 CCTAACTTATATGCTACTCTTTTCGGG 59.401 40.741 0.00 0.00 0.00 5.14
2499 2931 8.358148 TCCTAACTTATATGCTACTCTTTTCGG 58.642 37.037 0.00 0.00 0.00 4.30
2500 2932 9.745880 TTCCTAACTTATATGCTACTCTTTTCG 57.254 33.333 0.00 0.00 0.00 3.46
2517 2949 6.910259 ATGGAGGGAGTATTTTCCTAACTT 57.090 37.500 0.00 0.00 37.40 2.66
2579 3011 3.727726 ACTTGGCCAAACTTTACAATGC 58.272 40.909 20.91 0.00 0.00 3.56
2586 3018 8.261522 TGTTTTCTATAAACTTGGCCAAACTTT 58.738 29.630 20.91 20.14 0.00 2.66
2690 3132 0.605589 ACAGTGCCACTAGTCTCAGC 59.394 55.000 0.00 0.00 0.00 4.26
2697 3139 5.335661 GGGATGTTTTTAACAGTGCCACTAG 60.336 44.000 0.00 0.00 45.95 2.57
2731 3173 5.713792 TTTCAAACTCCATCCGCAATTTA 57.286 34.783 0.00 0.00 0.00 1.40
2732 3174 4.599047 TTTCAAACTCCATCCGCAATTT 57.401 36.364 0.00 0.00 0.00 1.82
2733 3175 4.806640 ATTTCAAACTCCATCCGCAATT 57.193 36.364 0.00 0.00 0.00 2.32
2915 3357 9.466497 AGAACAGCTAATTCCTTGATTATCAAA 57.534 29.630 9.05 0.00 35.73 2.69
3081 3523 3.008704 CACATCCATGGGCATCAGATCTA 59.991 47.826 13.02 0.00 0.00 1.98
3085 3527 0.184211 CCACATCCATGGGCATCAGA 59.816 55.000 13.02 0.00 35.95 3.27
3135 3577 1.684450 CTGAATGGCTAATGCATGGCA 59.316 47.619 21.21 18.16 44.86 4.92
3136 3578 1.958579 TCTGAATGGCTAATGCATGGC 59.041 47.619 14.27 14.27 41.91 4.40
3137 3579 4.866508 AATCTGAATGGCTAATGCATGG 57.133 40.909 0.00 0.00 41.91 3.66
3138 3580 4.447724 GCAAATCTGAATGGCTAATGCATG 59.552 41.667 0.00 0.00 41.91 4.06
3139 3581 4.344102 AGCAAATCTGAATGGCTAATGCAT 59.656 37.500 0.00 0.00 41.91 3.96
3140 3582 3.702548 AGCAAATCTGAATGGCTAATGCA 59.297 39.130 0.00 0.00 41.91 3.96
3141 3583 4.317671 AGCAAATCTGAATGGCTAATGC 57.682 40.909 0.00 0.00 38.76 3.56
3142 3584 5.657474 ACAAGCAAATCTGAATGGCTAATG 58.343 37.500 0.00 0.00 33.80 1.90
3143 3585 5.927281 ACAAGCAAATCTGAATGGCTAAT 57.073 34.783 0.00 0.00 33.80 1.73
3144 3586 5.945784 AGTACAAGCAAATCTGAATGGCTAA 59.054 36.000 0.00 0.00 33.80 3.09
3159 3602 5.163416 TGCATAGCTCTATTGAGTACAAGCA 60.163 40.000 6.05 7.46 42.13 3.91
3193 3637 8.021898 ACTTTAAGCCATATGGTTTTATGCAT 57.978 30.769 26.38 3.79 39.42 3.96
3238 3682 7.761409 TGCATGCAAGTTCTAACTATTAAAGG 58.239 34.615 20.30 0.00 38.57 3.11
3250 3694 6.985645 TGTAAAGAAAAATGCATGCAAGTTCT 59.014 30.769 26.68 26.30 0.00 3.01
3260 3704 8.196771 ACATTCAGAACTGTAAAGAAAAATGCA 58.803 29.630 0.00 0.00 0.00 3.96
3268 3712 8.735315 TGTCAAAAACATTCAGAACTGTAAAGA 58.265 29.630 1.73 0.00 31.20 2.52
3269 3713 8.909708 TGTCAAAAACATTCAGAACTGTAAAG 57.090 30.769 1.73 0.00 31.20 1.85
3270 3714 9.698309 TTTGTCAAAAACATTCAGAACTGTAAA 57.302 25.926 0.00 0.00 37.82 2.01
3271 3715 9.868277 ATTTGTCAAAAACATTCAGAACTGTAA 57.132 25.926 1.31 0.00 37.82 2.41
3313 3757 4.367450 TGTAACAGTTGGCAAAATTGAGC 58.633 39.130 0.00 0.00 0.00 4.26
3361 3805 6.312399 TGTACCTTTTGACAATGTGATCAC 57.688 37.500 19.27 19.27 0.00 3.06
3362 3806 6.489700 ACATGTACCTTTTGACAATGTGATCA 59.510 34.615 0.00 0.00 0.00 2.92
3363 3807 6.803320 CACATGTACCTTTTGACAATGTGATC 59.197 38.462 0.00 0.00 37.32 2.92
3364 3808 6.489700 TCACATGTACCTTTTGACAATGTGAT 59.510 34.615 13.02 0.00 38.15 3.06
3372 3816 5.790593 TCCTAGTCACATGTACCTTTTGAC 58.209 41.667 0.00 0.00 37.45 3.18
3410 3854 6.747280 CCATTTTTCTCTACGGTGCAATTTAG 59.253 38.462 0.00 0.00 0.00 1.85
3420 3894 5.567138 AAATCAGCCATTTTTCTCTACGG 57.433 39.130 0.00 0.00 29.60 4.02
3441 3915 3.702045 ACGAACCCATTCAAGTTGGAAAA 59.298 39.130 2.34 0.00 36.26 2.29
3442 3916 3.067461 CACGAACCCATTCAAGTTGGAAA 59.933 43.478 2.34 0.00 36.26 3.13
3471 3945 8.430801 AGATAGAGAAGTTGTTAATCACATGC 57.569 34.615 0.00 0.00 34.43 4.06
3545 4019 8.898761 TCTGTGAAAGCAATAAACTCAACTTAA 58.101 29.630 0.00 0.00 0.00 1.85
3702 4177 5.279758 CCAAATTGGAAATAAAACTCCGGGT 60.280 40.000 6.04 0.00 40.96 5.28
3782 4257 5.178797 ACAAGACCAACATACAGCAGTATC 58.821 41.667 0.00 0.00 38.88 2.24
3837 4313 1.085091 CTTCATCAGCACAGCAGGAC 58.915 55.000 0.00 0.00 0.00 3.85
3911 4387 7.275183 TCTACACCATCAAACTCCTGATATTG 58.725 38.462 0.00 0.00 34.20 1.90
3912 4388 7.437713 TCTACACCATCAAACTCCTGATATT 57.562 36.000 0.00 0.00 34.20 1.28
3935 4411 6.831769 TGCATAGAAGAAAAACATCGTCTTC 58.168 36.000 4.80 4.80 45.00 2.87
3940 4416 7.752239 AGTTTCATGCATAGAAGAAAAACATCG 59.248 33.333 10.50 0.00 32.44 3.84
3953 4429 5.759763 TGCTGGTATGTAGTTTCATGCATAG 59.240 40.000 0.00 0.00 33.31 2.23
3954 4430 5.679601 TGCTGGTATGTAGTTTCATGCATA 58.320 37.500 0.00 0.00 33.31 3.14
4036 4947 9.520515 AGTCCATTTCTAGTACATGATTTGTTT 57.479 29.630 0.00 0.00 39.87 2.83
4044 4955 6.344500 AGCTTCAGTCCATTTCTAGTACATG 58.656 40.000 0.00 0.00 0.00 3.21
4050 4961 5.055812 GGATGAGCTTCAGTCCATTTCTAG 58.944 45.833 0.00 0.00 29.97 2.43
4057 4968 0.547471 TGGGGATGAGCTTCAGTCCA 60.547 55.000 9.05 3.30 30.63 4.02
4085 4996 2.009051 CCACGTGCAGCTCAATAATCA 58.991 47.619 10.91 0.00 0.00 2.57
4086 4997 1.331756 CCCACGTGCAGCTCAATAATC 59.668 52.381 10.91 0.00 0.00 1.75
4087 4998 1.065491 TCCCACGTGCAGCTCAATAAT 60.065 47.619 10.91 0.00 0.00 1.28
4088 4999 0.323302 TCCCACGTGCAGCTCAATAA 59.677 50.000 10.91 0.00 0.00 1.40
4089 5000 0.323302 TTCCCACGTGCAGCTCAATA 59.677 50.000 10.91 0.00 0.00 1.90
4090 5001 1.073025 TTCCCACGTGCAGCTCAAT 59.927 52.632 10.91 0.00 0.00 2.57
4091 5002 1.891919 GTTCCCACGTGCAGCTCAA 60.892 57.895 10.91 0.00 0.00 3.02
4101 5012 6.516718 AGTGAATTCTCATATAGTTCCCACG 58.483 40.000 7.05 0.00 33.05 4.94
4105 5016 8.082852 TCGCTTAGTGAATTCTCATATAGTTCC 58.917 37.037 7.05 0.00 33.05 3.62
4118 5029 6.868622 ACTACTTCAGATCGCTTAGTGAATT 58.131 36.000 0.00 0.00 0.00 2.17
4164 5078 5.929058 ACAGTGTCACATGACTATCTGAT 57.071 39.130 24.34 0.00 44.99 2.90
4168 5082 8.479313 TCAAAATACAGTGTCACATGACTATC 57.521 34.615 12.98 4.45 44.99 2.08
4204 5118 1.617850 CAGGCAAAGGCACATGGTTAA 59.382 47.619 0.00 0.00 43.71 2.01
4282 5196 3.503363 GCATCCTGTGTGAGGCGC 61.503 66.667 0.00 0.00 42.47 6.53
4284 5198 2.001361 GCATGCATCCTGTGTGAGGC 62.001 60.000 14.21 0.00 42.47 4.70
4338 5252 3.507622 GCAAACCAGACCTGCTAATTTCT 59.492 43.478 0.00 0.00 33.20 2.52
4399 5313 3.920446 TGTCGCACAGCACTAAAGATTA 58.080 40.909 0.00 0.00 0.00 1.75
4429 5343 7.365741 AGCAGCACACATTTTATCATATAAGC 58.634 34.615 0.00 0.00 0.00 3.09
4430 5344 8.562052 TGAGCAGCACACATTTTATCATATAAG 58.438 33.333 0.00 0.00 0.00 1.73
4431 5345 8.449251 TGAGCAGCACACATTTTATCATATAA 57.551 30.769 0.00 0.00 0.00 0.98
4433 5347 6.947644 TGAGCAGCACACATTTTATCATAT 57.052 33.333 0.00 0.00 0.00 1.78
4434 5348 6.756299 TTGAGCAGCACACATTTTATCATA 57.244 33.333 0.00 0.00 0.00 2.15
4436 5350 5.450592 TTTGAGCAGCACACATTTTATCA 57.549 34.783 0.00 0.00 0.00 2.15
4437 5351 6.956299 ATTTTGAGCAGCACACATTTTATC 57.044 33.333 0.00 0.00 0.00 1.75
4456 5381 3.052329 TCCTTTTGCCCCTGGAAATTTT 58.948 40.909 0.00 0.00 0.00 1.82
4467 5392 2.256306 TCCCTTGATTTCCTTTTGCCC 58.744 47.619 0.00 0.00 0.00 5.36
4470 5395 5.726980 TGTGATCCCTTGATTTCCTTTTG 57.273 39.130 0.00 0.00 0.00 2.44
4480 5405 3.450817 TCGCTCTTAATGTGATCCCTTGA 59.549 43.478 0.00 0.00 0.00 3.02
4491 5416 4.805719 TGTACAATCTGCTCGCTCTTAATG 59.194 41.667 0.00 0.00 0.00 1.90
4493 5418 4.450082 TGTACAATCTGCTCGCTCTTAA 57.550 40.909 0.00 0.00 0.00 1.85
4508 5433 2.159014 ACAGTTGAGCGGTCTTGTACAA 60.159 45.455 16.64 8.28 0.00 2.41
4509 5434 1.411246 ACAGTTGAGCGGTCTTGTACA 59.589 47.619 16.64 0.00 0.00 2.90
4518 5443 1.571460 GCTGTTCACAGTTGAGCGG 59.429 57.895 8.72 0.00 45.45 5.52
4522 5447 2.595124 TCTTCGCTGTTCACAGTTGA 57.405 45.000 8.72 4.68 45.45 3.18
4529 5454 1.089112 CATGCCATCTTCGCTGTTCA 58.911 50.000 0.00 0.00 0.00 3.18
4534 5459 0.035152 TTCACCATGCCATCTTCGCT 60.035 50.000 0.00 0.00 0.00 4.93
4543 5468 2.083774 TCGTTCAGAATTCACCATGCC 58.916 47.619 8.44 0.00 0.00 4.40
4565 5490 0.790814 CTTCTTTCGGGACTTGCGTC 59.209 55.000 0.00 0.00 39.49 5.19
4583 5508 4.130118 GCATCATTATTCCTCAACGGTCT 58.870 43.478 0.00 0.00 0.00 3.85
4585 5510 3.214328 GGCATCATTATTCCTCAACGGT 58.786 45.455 0.00 0.00 0.00 4.83
4587 5512 5.443185 AATGGCATCATTATTCCTCAACG 57.557 39.130 0.00 0.00 41.41 4.10
4640 5569 1.719600 AGTCAGCGAGATTGCAAGTC 58.280 50.000 4.94 3.29 37.31 3.01
4641 5570 1.802960 CAAGTCAGCGAGATTGCAAGT 59.197 47.619 4.94 0.00 37.31 3.16
4652 5581 3.691049 TTCCAGAAAAACAAGTCAGCG 57.309 42.857 0.00 0.00 0.00 5.18
4662 5591 5.495640 AGCAAAACCATGTTTCCAGAAAAA 58.504 33.333 0.00 0.00 31.33 1.94
4663 5592 5.096443 AGCAAAACCATGTTTCCAGAAAA 57.904 34.783 0.00 0.00 31.33 2.29
4698 5627 3.181967 CGAAGCGACTGGGAAGCG 61.182 66.667 0.00 0.00 35.78 4.68
4741 5670 8.017373 CCCATTTTACATCATCATCGTACAATC 58.983 37.037 0.00 0.00 0.00 2.67
4742 5671 7.719193 TCCCATTTTACATCATCATCGTACAAT 59.281 33.333 0.00 0.00 0.00 2.71
4748 5677 5.528690 ACTGTCCCATTTTACATCATCATCG 59.471 40.000 0.00 0.00 0.00 3.84
4765 5694 0.317479 ACACGCTCACTAACTGTCCC 59.683 55.000 0.00 0.00 0.00 4.46
4772 5701 1.663388 CGCACCACACGCTCACTAA 60.663 57.895 0.00 0.00 0.00 2.24
4782 5711 3.120321 AGATTAGACAAACGCACCACA 57.880 42.857 0.00 0.00 0.00 4.17
4785 5714 5.147162 CAGAAAAGATTAGACAAACGCACC 58.853 41.667 0.00 0.00 0.00 5.01
4788 5717 5.179555 AGACCAGAAAAGATTAGACAAACGC 59.820 40.000 0.00 0.00 0.00 4.84
4789 5718 6.787085 AGACCAGAAAAGATTAGACAAACG 57.213 37.500 0.00 0.00 0.00 3.60
4809 5738 0.390472 CAAGACCGCCTCTGGAAGAC 60.390 60.000 0.00 0.00 38.67 3.01
4818 5747 1.003118 TGCTCATAAACAAGACCGCCT 59.997 47.619 0.00 0.00 0.00 5.52
4823 5752 5.229423 TGCCAATTTGCTCATAAACAAGAC 58.771 37.500 2.90 0.00 0.00 3.01
4842 5771 5.633182 GCTAAAACGAAATTGAAATCTGCCA 59.367 36.000 0.00 0.00 0.00 4.92
4844 5773 6.033937 GGAGCTAAAACGAAATTGAAATCTGC 59.966 38.462 0.00 0.00 0.00 4.26
4881 6507 2.818130 TTTGAAATCTGCCCACTTGC 57.182 45.000 0.00 0.00 0.00 4.01
4890 6516 8.615211 TGCAGTAATACTAGCATTTGAAATCTG 58.385 33.333 11.52 0.00 31.03 2.90
4893 6519 7.013655 CCCTGCAGTAATACTAGCATTTGAAAT 59.986 37.037 13.81 0.00 33.91 2.17
4895 6521 5.822519 CCCTGCAGTAATACTAGCATTTGAA 59.177 40.000 13.81 0.00 33.91 2.69
4923 6643 1.003233 GGCTTCTCTCGCCCTTGTT 60.003 57.895 0.00 0.00 41.73 2.83
4972 6692 2.034124 CCCTGAATTTACATGCCCCAG 58.966 52.381 0.00 0.00 0.00 4.45
5066 6804 4.406456 ACAATGGAGCTTGGTGTATTCAA 58.594 39.130 0.00 0.00 0.00 2.69
5119 6857 6.267471 TGACCAGGTTTTCAATTAAGATTGCT 59.733 34.615 0.00 0.00 41.94 3.91
5120 6858 6.454795 TGACCAGGTTTTCAATTAAGATTGC 58.545 36.000 0.00 0.00 41.94 3.56
5121 6859 7.092716 CCTGACCAGGTTTTCAATTAAGATTG 58.907 38.462 7.88 0.00 43.61 2.67
5144 6882 7.095270 CGTTATTCACTTGTAGTTCTTACCCT 58.905 38.462 0.00 0.00 0.00 4.34
5146 6884 7.148689 CCACGTTATTCACTTGTAGTTCTTACC 60.149 40.741 0.00 0.00 0.00 2.85
5154 6892 5.522460 CCATACCCACGTTATTCACTTGTAG 59.478 44.000 0.00 0.00 0.00 2.74
5155 6893 5.421277 CCATACCCACGTTATTCACTTGTA 58.579 41.667 0.00 0.00 0.00 2.41
5156 6894 4.258543 CCATACCCACGTTATTCACTTGT 58.741 43.478 0.00 0.00 0.00 3.16
5157 6895 3.064820 GCCATACCCACGTTATTCACTTG 59.935 47.826 0.00 0.00 0.00 3.16
5163 6901 3.881089 GCTTTAGCCATACCCACGTTATT 59.119 43.478 0.00 0.00 34.31 1.40
5228 6967 4.671590 TCCGACACCAGGCTCCGA 62.672 66.667 0.00 0.00 0.00 4.55
5231 6970 1.827399 TTTCCTCCGACACCAGGCTC 61.827 60.000 0.00 0.00 0.00 4.70
5287 7026 8.825667 AACATACTTGTGTGTTTTCAAAGTTT 57.174 26.923 9.52 0.00 35.13 2.66
5291 7030 9.862371 AATGTAACATACTTGTGTGTTTTCAAA 57.138 25.926 18.11 1.14 39.18 2.69
5294 7033 9.730420 AGAAATGTAACATACTTGTGTGTTTTC 57.270 29.630 18.11 15.19 39.18 2.29
5328 7067 7.384660 TCACACCAAAAAGCATTTCATTATGAC 59.615 33.333 0.00 0.00 37.28 3.06
5409 7149 0.378257 CGGACCTGATGGAAATTGCG 59.622 55.000 0.00 0.00 37.04 4.85
5516 7261 3.714144 TGAAAGGGTGGTGGAAAGAAAA 58.286 40.909 0.00 0.00 0.00 2.29
5568 7336 7.820872 CCGGTTCAGAAGGTAAGTAAATTAAGA 59.179 37.037 0.00 0.00 0.00 2.10
5572 7340 5.872963 ACCGGTTCAGAAGGTAAGTAAATT 58.127 37.500 0.00 0.00 36.34 1.82
5579 7347 3.842007 TGAAACCGGTTCAGAAGGTAA 57.158 42.857 22.53 0.00 41.47 2.85
5627 7395 9.878667 TTCTGACGTGAATTACCTTATATTTCA 57.121 29.630 0.00 0.00 0.00 2.69
5693 7462 5.738909 AGTAGTTAGCTCGTGACTTACCTA 58.261 41.667 0.00 0.00 0.00 3.08
5712 7481 9.148104 GCAAACCGGGTATAAATATTCTAGTAG 57.852 37.037 6.32 0.00 0.00 2.57
5713 7482 8.649591 TGCAAACCGGGTATAAATATTCTAGTA 58.350 33.333 6.32 0.00 0.00 1.82
5714 7483 7.511268 TGCAAACCGGGTATAAATATTCTAGT 58.489 34.615 6.32 0.00 0.00 2.57
5715 7484 7.972832 TGCAAACCGGGTATAAATATTCTAG 57.027 36.000 6.32 0.00 0.00 2.43
5729 7499 4.973360 CGTGCGTTGCAAACCGGG 62.973 66.667 6.32 0.00 46.28 5.73
5778 7548 7.010183 CGTACGAGATATCCTTTTTCACAACAT 59.990 37.037 10.44 0.00 0.00 2.71
5780 7550 6.309737 ACGTACGAGATATCCTTTTTCACAAC 59.690 38.462 24.41 0.00 0.00 3.32
5781 7551 6.392354 ACGTACGAGATATCCTTTTTCACAA 58.608 36.000 24.41 0.00 0.00 3.33
5783 7553 6.882458 AACGTACGAGATATCCTTTTTCAC 57.118 37.500 24.41 0.00 0.00 3.18
5784 7554 6.974622 GGTAACGTACGAGATATCCTTTTTCA 59.025 38.462 24.41 0.00 0.00 2.69
5785 7555 7.199078 AGGTAACGTACGAGATATCCTTTTTC 58.801 38.462 24.41 0.00 46.39 2.29
5789 7559 7.220030 TCTTAGGTAACGTACGAGATATCCTT 58.780 38.462 24.41 5.46 46.39 3.36
5828 7599 7.148356 GCATTGATCTACTCATCTGTGTGAAAA 60.148 37.037 0.00 0.00 32.72 2.29
5837 7608 5.987098 ACTGTTGCATTGATCTACTCATCT 58.013 37.500 0.00 0.00 32.72 2.90
5842 7613 9.890629 TCTTTATTACTGTTGCATTGATCTACT 57.109 29.630 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.