Multiple sequence alignment - TraesCS5B01G172100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G172100 chr5B 100.000 3245 0 0 1 3245 316556634 316553390 0.000000e+00 5993
1 TraesCS5B01G172100 chr5B 95.500 400 16 2 59 456 382718804 382719203 3.530000e-179 638
2 TraesCS5B01G172100 chr3B 94.739 2794 102 23 455 3239 409840803 409838046 0.000000e+00 4303
3 TraesCS5B01G172100 chr3B 93.618 2789 164 10 455 3233 398772710 398775494 0.000000e+00 4152
4 TraesCS5B01G172100 chr3B 93.012 2762 160 17 480 3233 565179671 565182407 0.000000e+00 4000
5 TraesCS5B01G172100 chr3B 95.750 400 15 2 59 456 420449125 420449524 0.000000e+00 643
6 TraesCS5B01G172100 chr3B 95.250 400 17 2 59 456 661286408 661286009 1.640000e-177 632
7 TraesCS5B01G172100 chrUn 93.867 2772 155 9 480 3239 59444900 59442132 0.000000e+00 4163
8 TraesCS5B01G172100 chr2B 95.143 2594 92 15 661 3245 550643090 550640522 0.000000e+00 4061
9 TraesCS5B01G172100 chr2B 91.451 1509 117 12 471 1975 405161440 405162940 0.000000e+00 2061
10 TraesCS5B01G172100 chr2B 90.933 1511 124 12 470 1975 386132656 386134158 0.000000e+00 2019
11 TraesCS5B01G172100 chr2B 90.582 1529 128 14 455 1975 320940570 320939050 0.000000e+00 2012
12 TraesCS5B01G172100 chr2B 95.750 400 15 2 59 456 389192856 389192457 0.000000e+00 643
13 TraesCS5B01G172100 chr1B 92.310 2809 179 25 455 3245 556073152 556070363 0.000000e+00 3956
14 TraesCS5B01G172100 chr1B 96.250 400 12 3 59 456 120343111 120343509 0.000000e+00 652
15 TraesCS5B01G172100 chr1B 95.500 400 16 2 59 456 301906689 301907088 3.530000e-179 638
16 TraesCS5B01G172100 chr1B 95.262 401 17 2 58 456 339571593 339571193 4.570000e-178 634
17 TraesCS5B01G172100 chr7B 92.100 2810 193 20 455 3245 476088197 476085398 0.000000e+00 3932
18 TraesCS5B01G172100 chr6B 90.991 2775 229 11 471 3233 144613970 144616735 0.000000e+00 3720
19 TraesCS5B01G172100 chr6B 94.815 405 19 2 54 456 674811895 674812299 5.910000e-177 630
20 TraesCS5B01G172100 chr7A 89.989 2637 230 25 480 3102 396167674 396165058 0.000000e+00 3376
21 TraesCS5B01G172100 chr2D 95.750 400 15 2 59 456 39458702 39458303 0.000000e+00 643


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G172100 chr5B 316553390 316556634 3244 True 5993 5993 100.000 1 3245 1 chr5B.!!$R1 3244
1 TraesCS5B01G172100 chr3B 409838046 409840803 2757 True 4303 4303 94.739 455 3239 1 chr3B.!!$R1 2784
2 TraesCS5B01G172100 chr3B 398772710 398775494 2784 False 4152 4152 93.618 455 3233 1 chr3B.!!$F1 2778
3 TraesCS5B01G172100 chr3B 565179671 565182407 2736 False 4000 4000 93.012 480 3233 1 chr3B.!!$F3 2753
4 TraesCS5B01G172100 chrUn 59442132 59444900 2768 True 4163 4163 93.867 480 3239 1 chrUn.!!$R1 2759
5 TraesCS5B01G172100 chr2B 550640522 550643090 2568 True 4061 4061 95.143 661 3245 1 chr2B.!!$R3 2584
6 TraesCS5B01G172100 chr2B 405161440 405162940 1500 False 2061 2061 91.451 471 1975 1 chr2B.!!$F2 1504
7 TraesCS5B01G172100 chr2B 386132656 386134158 1502 False 2019 2019 90.933 470 1975 1 chr2B.!!$F1 1505
8 TraesCS5B01G172100 chr2B 320939050 320940570 1520 True 2012 2012 90.582 455 1975 1 chr2B.!!$R1 1520
9 TraesCS5B01G172100 chr1B 556070363 556073152 2789 True 3956 3956 92.310 455 3245 1 chr1B.!!$R2 2790
10 TraesCS5B01G172100 chr7B 476085398 476088197 2799 True 3932 3932 92.100 455 3245 1 chr7B.!!$R1 2790
11 TraesCS5B01G172100 chr6B 144613970 144616735 2765 False 3720 3720 90.991 471 3233 1 chr6B.!!$F1 2762
12 TraesCS5B01G172100 chr7A 396165058 396167674 2616 True 3376 3376 89.989 480 3102 1 chr7A.!!$R1 2622

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
142 143 0.038166 TGATTGGACACAAGGGGAGC 59.962 55.0 0.00 0.0 40.49 4.70 F
148 149 0.110486 GACACAAGGGGAGCCAAAGA 59.890 55.0 0.00 0.0 0.00 2.52 F
265 266 0.181824 ACGGTAACAGTGGCAAAGGT 59.818 50.0 0.00 0.0 0.00 3.50 F
776 784 0.375106 GGCTTATGCGAGCAACACTC 59.625 55.0 0.57 0.0 44.49 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1297 1315 2.995939 TGTCATCGAACTCATCTTGTGC 59.004 45.455 0.00 0.0 0.00 4.57 R
1577 1596 5.307976 TCTTCAATCTGAGGTCTTTCTTCCA 59.692 40.000 0.00 0.0 0.00 3.53 R
2221 2240 2.685366 CCATGCCATGGGTCCACT 59.315 61.111 16.33 0.0 46.86 4.00 R
2372 2398 2.494059 AGGGTCATGAAACAACTCACG 58.506 47.619 0.00 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.972875 GAAGGCTGGGGTGAGATG 57.027 61.111 0.00 0.00 0.00 2.90
18 19 1.225704 GAAGGCTGGGGTGAGATGG 59.774 63.158 0.00 0.00 0.00 3.51
19 20 2.900671 GAAGGCTGGGGTGAGATGGC 62.901 65.000 0.00 0.00 0.00 4.40
20 21 4.512914 GGCTGGGGTGAGATGGCC 62.513 72.222 0.00 0.00 0.00 5.36
21 22 3.415087 GCTGGGGTGAGATGGCCT 61.415 66.667 3.32 0.00 0.00 5.19
22 23 2.072487 GCTGGGGTGAGATGGCCTA 61.072 63.158 3.32 0.00 0.00 3.93
23 24 2.049627 GCTGGGGTGAGATGGCCTAG 62.050 65.000 3.32 0.00 0.00 3.02
24 25 0.692419 CTGGGGTGAGATGGCCTAGT 60.692 60.000 3.32 0.00 0.00 2.57
25 26 0.691078 TGGGGTGAGATGGCCTAGTC 60.691 60.000 3.32 0.00 0.00 2.59
26 27 1.742768 GGGTGAGATGGCCTAGTCG 59.257 63.158 3.32 0.00 0.00 4.18
27 28 1.068250 GGTGAGATGGCCTAGTCGC 59.932 63.158 3.32 3.98 0.00 5.19
28 29 1.676678 GGTGAGATGGCCTAGTCGCA 61.677 60.000 3.32 4.97 0.00 5.10
29 30 0.528684 GTGAGATGGCCTAGTCGCAC 60.529 60.000 18.41 18.41 37.84 5.34
30 31 0.970427 TGAGATGGCCTAGTCGCACA 60.970 55.000 3.32 1.31 0.00 4.57
31 32 0.249238 GAGATGGCCTAGTCGCACAG 60.249 60.000 3.32 0.00 0.00 3.66
32 33 0.684479 AGATGGCCTAGTCGCACAGA 60.684 55.000 3.32 0.00 0.00 3.41
33 34 0.249238 GATGGCCTAGTCGCACAGAG 60.249 60.000 3.32 0.00 0.00 3.35
34 35 1.680522 ATGGCCTAGTCGCACAGAGG 61.681 60.000 3.32 0.00 0.00 3.69
61 62 4.827087 CGGCAGAGCGGCAGTGAT 62.827 66.667 1.45 0.00 41.26 3.06
62 63 2.501128 GGCAGAGCGGCAGTGATA 59.499 61.111 1.45 0.00 40.76 2.15
63 64 1.153369 GGCAGAGCGGCAGTGATAA 60.153 57.895 1.45 0.00 40.76 1.75
64 65 1.432270 GGCAGAGCGGCAGTGATAAC 61.432 60.000 1.45 0.00 40.76 1.89
65 66 1.432270 GCAGAGCGGCAGTGATAACC 61.432 60.000 1.45 0.00 0.00 2.85
66 67 0.811616 CAGAGCGGCAGTGATAACCC 60.812 60.000 1.45 0.00 0.00 4.11
67 68 1.220749 GAGCGGCAGTGATAACCCA 59.779 57.895 1.45 0.00 0.00 4.51
68 69 1.078426 AGCGGCAGTGATAACCCAC 60.078 57.895 1.45 0.00 37.32 4.61
69 70 1.376683 GCGGCAGTGATAACCCACA 60.377 57.895 0.00 0.00 39.42 4.17
70 71 0.958382 GCGGCAGTGATAACCCACAA 60.958 55.000 0.00 0.00 39.42 3.33
71 72 1.086696 CGGCAGTGATAACCCACAAG 58.913 55.000 0.00 0.00 39.42 3.16
72 73 1.610624 CGGCAGTGATAACCCACAAGT 60.611 52.381 0.00 0.00 39.42 3.16
73 74 2.354303 CGGCAGTGATAACCCACAAGTA 60.354 50.000 0.00 0.00 39.42 2.24
74 75 3.681594 CGGCAGTGATAACCCACAAGTAT 60.682 47.826 0.00 0.00 39.42 2.12
75 76 4.442332 CGGCAGTGATAACCCACAAGTATA 60.442 45.833 0.00 0.00 39.42 1.47
76 77 5.057149 GGCAGTGATAACCCACAAGTATAG 58.943 45.833 0.00 0.00 39.42 1.31
77 78 5.057149 GCAGTGATAACCCACAAGTATAGG 58.943 45.833 0.00 0.00 39.42 2.57
84 85 1.002087 CCCACAAGTATAGGGGATCGC 59.998 57.143 0.06 0.06 43.57 4.58
85 86 1.691976 CCACAAGTATAGGGGATCGCA 59.308 52.381 12.32 0.00 0.00 5.10
86 87 2.104111 CCACAAGTATAGGGGATCGCAA 59.896 50.000 12.32 0.00 0.00 4.85
87 88 3.131396 CACAAGTATAGGGGATCGCAAC 58.869 50.000 12.32 4.19 0.00 4.17
88 89 2.769663 ACAAGTATAGGGGATCGCAACA 59.230 45.455 12.32 0.00 0.00 3.33
89 90 3.181465 ACAAGTATAGGGGATCGCAACAG 60.181 47.826 12.32 4.14 0.00 3.16
90 91 2.679082 AGTATAGGGGATCGCAACAGT 58.321 47.619 12.32 0.00 0.00 3.55
91 92 3.039011 AGTATAGGGGATCGCAACAGTT 58.961 45.455 12.32 0.00 0.00 3.16
92 93 3.454812 AGTATAGGGGATCGCAACAGTTT 59.545 43.478 12.32 0.00 0.00 2.66
93 94 2.871096 TAGGGGATCGCAACAGTTTT 57.129 45.000 12.32 0.00 0.00 2.43
94 95 1.534729 AGGGGATCGCAACAGTTTTC 58.465 50.000 12.32 0.00 0.00 2.29
95 96 0.168128 GGGGATCGCAACAGTTTTCG 59.832 55.000 12.32 0.00 0.00 3.46
96 97 1.153353 GGGATCGCAACAGTTTTCGA 58.847 50.000 4.64 9.18 35.34 3.71
97 98 1.128692 GGGATCGCAACAGTTTTCGAG 59.871 52.381 4.64 0.00 34.30 4.04
98 99 1.128692 GGATCGCAACAGTTTTCGAGG 59.871 52.381 11.65 0.00 34.30 4.63
99 100 2.066262 GATCGCAACAGTTTTCGAGGA 58.934 47.619 11.65 0.00 34.30 3.71
100 101 2.163818 TCGCAACAGTTTTCGAGGAT 57.836 45.000 3.87 0.00 0.00 3.24
101 102 3.306917 TCGCAACAGTTTTCGAGGATA 57.693 42.857 3.87 0.00 0.00 2.59
102 103 3.250744 TCGCAACAGTTTTCGAGGATAG 58.749 45.455 3.87 0.00 0.00 2.08
103 104 3.057104 TCGCAACAGTTTTCGAGGATAGA 60.057 43.478 3.87 0.00 0.00 1.98
104 105 3.304559 CGCAACAGTTTTCGAGGATAGAG 59.695 47.826 0.00 0.00 0.00 2.43
105 106 4.246458 GCAACAGTTTTCGAGGATAGAGT 58.754 43.478 0.00 0.00 0.00 3.24
106 107 5.408356 GCAACAGTTTTCGAGGATAGAGTA 58.592 41.667 0.00 0.00 0.00 2.59
107 108 6.043411 GCAACAGTTTTCGAGGATAGAGTAT 58.957 40.000 0.00 0.00 0.00 2.12
108 109 6.535508 GCAACAGTTTTCGAGGATAGAGTATT 59.464 38.462 0.00 0.00 0.00 1.89
109 110 7.254151 GCAACAGTTTTCGAGGATAGAGTATTC 60.254 40.741 0.00 0.00 0.00 1.75
110 111 7.406031 ACAGTTTTCGAGGATAGAGTATTCA 57.594 36.000 0.00 0.00 0.00 2.57
111 112 7.837863 ACAGTTTTCGAGGATAGAGTATTCAA 58.162 34.615 0.00 0.00 0.00 2.69
112 113 7.760340 ACAGTTTTCGAGGATAGAGTATTCAAC 59.240 37.037 0.00 0.00 0.00 3.18
113 114 7.222999 CAGTTTTCGAGGATAGAGTATTCAACC 59.777 40.741 0.00 0.00 0.00 3.77
114 115 5.786264 TTCGAGGATAGAGTATTCAACCC 57.214 43.478 0.00 0.00 0.00 4.11
115 116 4.800023 TCGAGGATAGAGTATTCAACCCA 58.200 43.478 0.00 0.00 0.00 4.51
116 117 5.205821 TCGAGGATAGAGTATTCAACCCAA 58.794 41.667 0.00 0.00 0.00 4.12
117 118 5.659525 TCGAGGATAGAGTATTCAACCCAAA 59.340 40.000 0.00 0.00 0.00 3.28
118 119 6.326583 TCGAGGATAGAGTATTCAACCCAAAT 59.673 38.462 0.00 0.00 0.00 2.32
119 120 6.992715 CGAGGATAGAGTATTCAACCCAAATT 59.007 38.462 0.00 0.00 0.00 1.82
120 121 7.499232 CGAGGATAGAGTATTCAACCCAAATTT 59.501 37.037 0.00 0.00 0.00 1.82
121 122 9.847224 GAGGATAGAGTATTCAACCCAAATTTA 57.153 33.333 0.00 0.00 0.00 1.40
129 130 9.889128 AGTATTCAACCCAAATTTATTGATTGG 57.111 29.630 10.73 0.00 42.59 3.16
130 131 9.883142 GTATTCAACCCAAATTTATTGATTGGA 57.117 29.630 10.73 0.13 45.14 3.53
131 132 8.791327 ATTCAACCCAAATTTATTGATTGGAC 57.209 30.769 10.73 0.00 45.14 4.02
132 133 7.308450 TCAACCCAAATTTATTGATTGGACA 57.692 32.000 5.38 0.00 45.14 4.02
133 134 7.158021 TCAACCCAAATTTATTGATTGGACAC 58.842 34.615 5.38 0.00 45.14 3.67
134 135 6.678568 ACCCAAATTTATTGATTGGACACA 57.321 33.333 5.38 0.00 45.14 3.72
135 136 7.072263 ACCCAAATTTATTGATTGGACACAA 57.928 32.000 5.38 0.00 45.14 3.33
136 137 7.160726 ACCCAAATTTATTGATTGGACACAAG 58.839 34.615 5.38 0.00 45.14 3.16
137 138 6.594937 CCCAAATTTATTGATTGGACACAAGG 59.405 38.462 5.38 0.00 45.14 3.61
138 139 6.594937 CCAAATTTATTGATTGGACACAAGGG 59.405 38.462 0.00 0.00 45.14 3.95
139 140 5.937975 ATTTATTGATTGGACACAAGGGG 57.062 39.130 0.00 0.00 40.49 4.79
140 141 4.666412 TTATTGATTGGACACAAGGGGA 57.334 40.909 0.00 0.00 40.49 4.81
141 142 2.584835 TTGATTGGACACAAGGGGAG 57.415 50.000 0.00 0.00 40.49 4.30
142 143 0.038166 TGATTGGACACAAGGGGAGC 59.962 55.000 0.00 0.00 40.49 4.70
143 144 0.681243 GATTGGACACAAGGGGAGCC 60.681 60.000 0.00 0.00 40.49 4.70
144 145 1.434513 ATTGGACACAAGGGGAGCCA 61.435 55.000 0.00 0.00 40.49 4.75
145 146 1.650242 TTGGACACAAGGGGAGCCAA 61.650 55.000 0.00 0.00 33.38 4.52
146 147 1.152830 GGACACAAGGGGAGCCAAA 59.847 57.895 0.00 0.00 0.00 3.28
147 148 0.895559 GGACACAAGGGGAGCCAAAG 60.896 60.000 0.00 0.00 0.00 2.77
148 149 0.110486 GACACAAGGGGAGCCAAAGA 59.890 55.000 0.00 0.00 0.00 2.52
149 150 0.555769 ACACAAGGGGAGCCAAAGAA 59.444 50.000 0.00 0.00 0.00 2.52
150 151 1.147817 ACACAAGGGGAGCCAAAGAAT 59.852 47.619 0.00 0.00 0.00 2.40
151 152 2.378547 ACACAAGGGGAGCCAAAGAATA 59.621 45.455 0.00 0.00 0.00 1.75
152 153 3.011708 ACACAAGGGGAGCCAAAGAATAT 59.988 43.478 0.00 0.00 0.00 1.28
153 154 4.026052 CACAAGGGGAGCCAAAGAATATT 58.974 43.478 0.00 0.00 0.00 1.28
154 155 4.098501 CACAAGGGGAGCCAAAGAATATTC 59.901 45.833 7.41 7.41 0.00 1.75
155 156 4.017130 ACAAGGGGAGCCAAAGAATATTCT 60.017 41.667 12.37 12.37 39.74 2.40
156 157 4.445557 AGGGGAGCCAAAGAATATTCTC 57.554 45.455 18.19 6.14 36.28 2.87
157 158 3.788142 AGGGGAGCCAAAGAATATTCTCA 59.212 43.478 18.19 0.00 36.28 3.27
158 159 4.230502 AGGGGAGCCAAAGAATATTCTCAA 59.769 41.667 18.19 0.00 36.28 3.02
159 160 4.582240 GGGGAGCCAAAGAATATTCTCAAG 59.418 45.833 18.19 10.54 36.28 3.02
160 161 5.196695 GGGAGCCAAAGAATATTCTCAAGT 58.803 41.667 18.19 0.00 36.28 3.16
161 162 6.357367 GGGAGCCAAAGAATATTCTCAAGTA 58.643 40.000 18.19 0.00 36.28 2.24
162 163 7.001073 GGGAGCCAAAGAATATTCTCAAGTAT 58.999 38.462 18.19 3.93 36.28 2.12
163 164 7.503902 GGGAGCCAAAGAATATTCTCAAGTATT 59.496 37.037 18.19 5.32 36.28 1.89
164 165 9.561069 GGAGCCAAAGAATATTCTCAAGTATTA 57.439 33.333 18.19 0.00 36.28 0.98
166 167 9.061435 AGCCAAAGAATATTCTCAAGTATTAGC 57.939 33.333 18.19 11.83 36.28 3.09
167 168 8.840321 GCCAAAGAATATTCTCAAGTATTAGCA 58.160 33.333 18.19 0.00 36.28 3.49
178 179 7.054855 CTCAAGTATTAGCAGTTGAGTTGTC 57.945 40.000 11.00 0.00 45.15 3.18
179 180 6.521162 TCAAGTATTAGCAGTTGAGTTGTCA 58.479 36.000 0.00 0.00 33.85 3.58
180 181 6.989759 TCAAGTATTAGCAGTTGAGTTGTCAA 59.010 34.615 0.00 0.00 40.55 3.18
181 182 7.661437 TCAAGTATTAGCAGTTGAGTTGTCAAT 59.339 33.333 0.00 0.00 44.58 2.57
182 183 7.986085 AGTATTAGCAGTTGAGTTGTCAATT 57.014 32.000 0.00 0.00 44.58 2.32
183 184 8.034058 AGTATTAGCAGTTGAGTTGTCAATTC 57.966 34.615 1.25 1.25 44.58 2.17
184 185 6.882610 ATTAGCAGTTGAGTTGTCAATTCA 57.117 33.333 6.67 6.67 44.58 2.57
185 186 6.691754 TTAGCAGTTGAGTTGTCAATTCAA 57.308 33.333 16.95 16.95 44.58 2.69
186 187 5.179045 AGCAGTTGAGTTGTCAATTCAAG 57.821 39.130 20.26 12.63 44.58 3.02
187 188 3.732721 GCAGTTGAGTTGTCAATTCAAGC 59.267 43.478 20.26 17.29 44.58 4.01
188 189 4.734402 GCAGTTGAGTTGTCAATTCAAGCA 60.734 41.667 20.26 1.06 44.58 3.91
189 190 4.736793 CAGTTGAGTTGTCAATTCAAGCAC 59.263 41.667 20.26 11.90 44.58 4.40
190 191 4.398988 AGTTGAGTTGTCAATTCAAGCACA 59.601 37.500 20.26 0.40 44.58 4.57
191 192 4.291540 TGAGTTGTCAATTCAAGCACAC 57.708 40.909 8.22 0.00 0.00 3.82
192 193 3.066621 TGAGTTGTCAATTCAAGCACACC 59.933 43.478 8.22 0.00 0.00 4.16
193 194 3.290710 AGTTGTCAATTCAAGCACACCT 58.709 40.909 0.00 0.00 0.00 4.00
194 195 3.067180 AGTTGTCAATTCAAGCACACCTG 59.933 43.478 0.00 0.00 0.00 4.00
195 196 1.955778 TGTCAATTCAAGCACACCTGG 59.044 47.619 0.00 0.00 0.00 4.45
196 197 2.229792 GTCAATTCAAGCACACCTGGA 58.770 47.619 0.00 0.00 0.00 3.86
197 198 2.821969 GTCAATTCAAGCACACCTGGAT 59.178 45.455 0.00 0.00 0.00 3.41
198 199 4.009675 GTCAATTCAAGCACACCTGGATA 58.990 43.478 0.00 0.00 0.00 2.59
199 200 4.458989 GTCAATTCAAGCACACCTGGATAA 59.541 41.667 0.00 0.00 0.00 1.75
200 201 4.458989 TCAATTCAAGCACACCTGGATAAC 59.541 41.667 0.00 0.00 0.00 1.89
201 202 3.788227 TTCAAGCACACCTGGATAACT 57.212 42.857 0.00 0.00 0.00 2.24
202 203 3.788227 TCAAGCACACCTGGATAACTT 57.212 42.857 0.00 0.00 0.00 2.66
203 204 4.901197 TCAAGCACACCTGGATAACTTA 57.099 40.909 0.00 0.00 0.00 2.24
204 205 4.832248 TCAAGCACACCTGGATAACTTAG 58.168 43.478 0.00 0.00 0.00 2.18
205 206 4.286032 TCAAGCACACCTGGATAACTTAGT 59.714 41.667 0.00 0.00 0.00 2.24
206 207 5.482526 TCAAGCACACCTGGATAACTTAGTA 59.517 40.000 0.00 0.00 0.00 1.82
207 208 6.156256 TCAAGCACACCTGGATAACTTAGTAT 59.844 38.462 0.00 0.00 0.00 2.12
208 209 6.163135 AGCACACCTGGATAACTTAGTATC 57.837 41.667 0.00 0.00 0.00 2.24
209 210 5.900123 AGCACACCTGGATAACTTAGTATCT 59.100 40.000 0.00 0.00 32.09 1.98
210 211 5.986135 GCACACCTGGATAACTTAGTATCTG 59.014 44.000 0.00 0.00 32.09 2.90
211 212 5.986135 CACACCTGGATAACTTAGTATCTGC 59.014 44.000 0.00 0.00 32.09 4.26
212 213 5.900123 ACACCTGGATAACTTAGTATCTGCT 59.100 40.000 0.00 0.00 32.09 4.24
213 214 6.183360 ACACCTGGATAACTTAGTATCTGCTG 60.183 42.308 0.00 0.00 32.09 4.41
214 215 5.221541 ACCTGGATAACTTAGTATCTGCTGC 60.222 44.000 0.00 0.00 32.09 5.25
215 216 5.221521 CCTGGATAACTTAGTATCTGCTGCA 60.222 44.000 0.88 0.88 32.09 4.41
216 217 6.233905 TGGATAACTTAGTATCTGCTGCAA 57.766 37.500 3.02 0.00 32.09 4.08
217 218 6.649155 TGGATAACTTAGTATCTGCTGCAAA 58.351 36.000 3.02 0.00 32.09 3.68
218 219 6.763135 TGGATAACTTAGTATCTGCTGCAAAG 59.237 38.462 3.02 5.88 32.09 2.77
219 220 6.763610 GGATAACTTAGTATCTGCTGCAAAGT 59.236 38.462 3.02 6.56 32.09 2.66
220 221 7.926555 GGATAACTTAGTATCTGCTGCAAAGTA 59.073 37.037 13.63 3.46 32.09 2.24
221 222 9.482627 GATAACTTAGTATCTGCTGCAAAGTAT 57.517 33.333 13.63 8.84 0.00 2.12
222 223 9.838339 ATAACTTAGTATCTGCTGCAAAGTATT 57.162 29.630 13.63 4.49 0.00 1.89
223 224 8.567285 AACTTAGTATCTGCTGCAAAGTATTT 57.433 30.769 13.63 0.00 40.26 1.40
224 225 9.667107 AACTTAGTATCTGCTGCAAAGTATTTA 57.333 29.630 13.63 0.00 35.03 1.40
225 226 9.319143 ACTTAGTATCTGCTGCAAAGTATTTAG 57.681 33.333 12.10 5.08 35.03 1.85
226 227 9.319143 CTTAGTATCTGCTGCAAAGTATTTAGT 57.681 33.333 3.02 0.00 35.03 2.24
229 230 9.099454 AGTATCTGCTGCAAAGTATTTAGTAAC 57.901 33.333 3.02 0.00 35.03 2.50
230 231 7.921786 ATCTGCTGCAAAGTATTTAGTAACA 57.078 32.000 3.02 0.00 35.03 2.41
231 232 7.737972 TCTGCTGCAAAGTATTTAGTAACAA 57.262 32.000 3.02 0.00 35.03 2.83
232 233 8.160521 TCTGCTGCAAAGTATTTAGTAACAAA 57.839 30.769 3.02 0.00 35.03 2.83
233 234 8.792633 TCTGCTGCAAAGTATTTAGTAACAAAT 58.207 29.630 3.02 0.00 35.03 2.32
236 237 9.010366 GCTGCAAAGTATTTAGTAACAAATAGC 57.990 33.333 0.00 0.00 35.03 2.97
248 249 7.303634 AGTAACAAATAGCATGGAAGTAACG 57.696 36.000 0.00 0.00 0.00 3.18
249 250 5.560966 AACAAATAGCATGGAAGTAACGG 57.439 39.130 0.00 0.00 0.00 4.44
250 251 4.585879 ACAAATAGCATGGAAGTAACGGT 58.414 39.130 0.00 0.00 0.00 4.83
251 252 5.736813 ACAAATAGCATGGAAGTAACGGTA 58.263 37.500 0.00 0.00 0.00 4.02
252 253 6.174760 ACAAATAGCATGGAAGTAACGGTAA 58.825 36.000 0.00 0.00 0.00 2.85
253 254 6.093082 ACAAATAGCATGGAAGTAACGGTAAC 59.907 38.462 0.00 0.00 0.00 2.50
254 255 3.688694 AGCATGGAAGTAACGGTAACA 57.311 42.857 0.00 0.00 0.00 2.41
255 256 3.596214 AGCATGGAAGTAACGGTAACAG 58.404 45.455 0.00 0.00 0.00 3.16
256 257 3.007614 AGCATGGAAGTAACGGTAACAGT 59.992 43.478 0.00 0.00 0.00 3.55
257 258 3.124636 GCATGGAAGTAACGGTAACAGTG 59.875 47.826 0.00 0.00 0.00 3.66
258 259 3.389925 TGGAAGTAACGGTAACAGTGG 57.610 47.619 0.00 0.00 0.00 4.00
259 260 2.071540 GGAAGTAACGGTAACAGTGGC 58.928 52.381 0.00 0.00 0.00 5.01
260 261 2.548493 GGAAGTAACGGTAACAGTGGCA 60.548 50.000 0.00 0.00 0.00 4.92
261 262 2.914695 AGTAACGGTAACAGTGGCAA 57.085 45.000 0.00 0.00 0.00 4.52
262 263 3.196939 AGTAACGGTAACAGTGGCAAA 57.803 42.857 0.00 0.00 0.00 3.68
263 264 3.135994 AGTAACGGTAACAGTGGCAAAG 58.864 45.455 0.00 0.00 0.00 2.77
264 265 1.314730 AACGGTAACAGTGGCAAAGG 58.685 50.000 0.00 0.00 0.00 3.11
265 266 0.181824 ACGGTAACAGTGGCAAAGGT 59.818 50.000 0.00 0.00 0.00 3.50
266 267 1.417145 ACGGTAACAGTGGCAAAGGTA 59.583 47.619 0.00 0.00 0.00 3.08
267 268 2.158784 ACGGTAACAGTGGCAAAGGTAA 60.159 45.455 0.00 0.00 0.00 2.85
268 269 2.224784 CGGTAACAGTGGCAAAGGTAAC 59.775 50.000 0.00 0.00 0.00 2.50
269 270 2.224784 GGTAACAGTGGCAAAGGTAACG 59.775 50.000 0.00 0.00 46.39 3.18
270 271 2.335316 AACAGTGGCAAAGGTAACGA 57.665 45.000 0.00 0.00 46.39 3.85
271 272 2.561478 ACAGTGGCAAAGGTAACGAT 57.439 45.000 0.00 0.00 46.39 3.73
272 273 3.688694 ACAGTGGCAAAGGTAACGATA 57.311 42.857 0.00 0.00 46.39 2.92
273 274 3.596214 ACAGTGGCAAAGGTAACGATAG 58.404 45.455 0.00 0.00 46.39 2.08
274 275 2.351726 CAGTGGCAAAGGTAACGATAGC 59.648 50.000 0.00 0.00 46.39 2.97
275 276 2.236395 AGTGGCAAAGGTAACGATAGCT 59.764 45.455 0.00 0.00 41.53 3.32
276 277 2.351726 GTGGCAAAGGTAACGATAGCTG 59.648 50.000 5.11 0.00 39.72 4.24
277 278 2.027561 TGGCAAAGGTAACGATAGCTGT 60.028 45.455 5.11 0.00 39.72 4.40
278 279 3.007635 GGCAAAGGTAACGATAGCTGTT 58.992 45.455 5.11 0.00 39.72 3.16
279 280 3.439129 GGCAAAGGTAACGATAGCTGTTT 59.561 43.478 5.11 0.00 39.72 2.83
280 281 4.082949 GGCAAAGGTAACGATAGCTGTTTT 60.083 41.667 5.11 0.00 39.72 2.43
281 282 4.851558 GCAAAGGTAACGATAGCTGTTTTG 59.148 41.667 5.11 7.62 39.72 2.44
282 283 5.562113 GCAAAGGTAACGATAGCTGTTTTGT 60.562 40.000 5.11 0.00 39.72 2.83
283 284 6.347888 GCAAAGGTAACGATAGCTGTTTTGTA 60.348 38.462 5.11 0.00 39.72 2.41
284 285 6.963049 AAGGTAACGATAGCTGTTTTGTAG 57.037 37.500 5.11 0.00 39.72 2.74
285 286 6.034161 AGGTAACGATAGCTGTTTTGTAGT 57.966 37.500 3.40 0.00 46.39 2.73
286 287 7.161773 AGGTAACGATAGCTGTTTTGTAGTA 57.838 36.000 3.40 0.00 46.39 1.82
287 288 7.605449 AGGTAACGATAGCTGTTTTGTAGTAA 58.395 34.615 3.40 0.00 46.39 2.24
288 289 8.255905 AGGTAACGATAGCTGTTTTGTAGTAAT 58.744 33.333 3.40 0.00 46.39 1.89
289 290 8.876790 GGTAACGATAGCTGTTTTGTAGTAATT 58.123 33.333 0.00 0.00 42.67 1.40
290 291 9.685005 GTAACGATAGCTGTTTTGTAGTAATTG 57.315 33.333 0.00 0.00 42.67 2.32
291 292 7.900782 ACGATAGCTGTTTTGTAGTAATTGT 57.099 32.000 0.00 0.00 42.67 2.71
292 293 8.991243 ACGATAGCTGTTTTGTAGTAATTGTA 57.009 30.769 0.00 0.00 42.67 2.41
293 294 9.426837 ACGATAGCTGTTTTGTAGTAATTGTAA 57.573 29.630 0.00 0.00 42.67 2.41
294 295 9.685005 CGATAGCTGTTTTGTAGTAATTGTAAC 57.315 33.333 0.00 0.00 0.00 2.50
297 298 8.446599 AGCTGTTTTGTAGTAATTGTAACAGT 57.553 30.769 0.00 0.00 41.66 3.55
298 299 9.550406 AGCTGTTTTGTAGTAATTGTAACAGTA 57.450 29.630 0.00 0.00 41.66 2.74
299 300 9.807386 GCTGTTTTGTAGTAATTGTAACAGTAG 57.193 33.333 0.00 0.00 41.66 2.57
300 301 9.807386 CTGTTTTGTAGTAATTGTAACAGTAGC 57.193 33.333 0.00 0.00 37.36 3.58
301 302 9.327628 TGTTTTGTAGTAATTGTAACAGTAGCA 57.672 29.630 0.00 0.00 0.00 3.49
305 306 8.487313 TGTAGTAATTGTAACAGTAGCAATGG 57.513 34.615 3.97 0.00 33.68 3.16
306 307 8.098286 TGTAGTAATTGTAACAGTAGCAATGGT 58.902 33.333 3.97 0.00 33.68 3.55
307 308 9.590451 GTAGTAATTGTAACAGTAGCAATGGTA 57.410 33.333 3.97 0.00 33.68 3.25
309 310 8.943002 AGTAATTGTAACAGTAGCAATGGTAAC 58.057 33.333 0.00 0.00 33.68 2.50
310 311 7.996098 AATTGTAACAGTAGCAATGGTAACT 57.004 32.000 0.00 0.00 33.68 2.24
312 313 9.509956 AATTGTAACAGTAGCAATGGTAACTAA 57.490 29.630 0.00 0.00 33.68 2.24
313 314 8.905660 TTGTAACAGTAGCAATGGTAACTAAA 57.094 30.769 0.00 0.00 37.61 1.85
314 315 9.509956 TTGTAACAGTAGCAATGGTAACTAAAT 57.490 29.630 0.00 0.00 37.61 1.40
318 319 8.209917 ACAGTAGCAATGGTAACTAAATAAGC 57.790 34.615 0.00 0.00 37.61 3.09
319 320 7.827236 ACAGTAGCAATGGTAACTAAATAAGCA 59.173 33.333 0.00 0.00 37.61 3.91
320 321 8.673711 CAGTAGCAATGGTAACTAAATAAGCAA 58.326 33.333 0.00 0.00 37.61 3.91
321 322 9.238368 AGTAGCAATGGTAACTAAATAAGCAAA 57.762 29.630 0.00 0.00 37.61 3.68
322 323 9.503427 GTAGCAATGGTAACTAAATAAGCAAAG 57.497 33.333 0.00 0.00 37.61 2.77
323 324 7.035612 AGCAATGGTAACTAAATAAGCAAAGC 58.964 34.615 0.00 0.00 37.61 3.51
324 325 6.811170 GCAATGGTAACTAAATAAGCAAAGCA 59.189 34.615 0.00 0.00 37.61 3.91
325 326 7.201435 GCAATGGTAACTAAATAAGCAAAGCAC 60.201 37.037 0.00 0.00 37.61 4.40
326 327 6.885952 TGGTAACTAAATAAGCAAAGCACA 57.114 33.333 0.00 0.00 37.61 4.57
327 328 7.278461 TGGTAACTAAATAAGCAAAGCACAA 57.722 32.000 0.00 0.00 37.61 3.33
328 329 7.891561 TGGTAACTAAATAAGCAAAGCACAAT 58.108 30.769 0.00 0.00 37.61 2.71
329 330 9.015367 TGGTAACTAAATAAGCAAAGCACAATA 57.985 29.630 0.00 0.00 37.61 1.90
347 348 4.332819 ACAATATGTGAAAAGCTCGTAGGC 59.667 41.667 0.00 0.00 0.00 3.93
348 349 2.472695 ATGTGAAAAGCTCGTAGGCA 57.527 45.000 0.00 0.00 34.17 4.75
349 350 2.472695 TGTGAAAAGCTCGTAGGCAT 57.527 45.000 0.00 0.00 34.17 4.40
350 351 2.778299 TGTGAAAAGCTCGTAGGCATT 58.222 42.857 0.00 0.00 34.17 3.56
351 352 2.483877 TGTGAAAAGCTCGTAGGCATTG 59.516 45.455 0.00 0.00 34.17 2.82
352 353 2.083774 TGAAAAGCTCGTAGGCATTGG 58.916 47.619 0.00 0.00 34.17 3.16
353 354 2.290008 TGAAAAGCTCGTAGGCATTGGA 60.290 45.455 0.00 0.00 34.17 3.53
354 355 2.717639 AAAGCTCGTAGGCATTGGAT 57.282 45.000 0.00 0.00 34.17 3.41
355 356 2.246719 AAGCTCGTAGGCATTGGATC 57.753 50.000 0.00 0.00 34.17 3.36
356 357 1.123077 AGCTCGTAGGCATTGGATCA 58.877 50.000 0.00 0.00 34.17 2.92
357 358 1.069823 AGCTCGTAGGCATTGGATCAG 59.930 52.381 0.00 0.00 34.17 2.90
358 359 1.202580 GCTCGTAGGCATTGGATCAGT 60.203 52.381 0.00 0.00 0.00 3.41
359 360 2.477825 CTCGTAGGCATTGGATCAGTG 58.522 52.381 0.00 0.00 0.00 3.66
360 361 2.101415 CTCGTAGGCATTGGATCAGTGA 59.899 50.000 0.00 0.00 0.00 3.41
361 362 2.700371 TCGTAGGCATTGGATCAGTGAT 59.300 45.455 4.98 4.98 0.00 3.06
362 363 2.804527 CGTAGGCATTGGATCAGTGATG 59.195 50.000 11.20 0.00 0.00 3.07
363 364 2.359981 AGGCATTGGATCAGTGATGG 57.640 50.000 11.20 0.00 0.00 3.51
364 365 1.848388 AGGCATTGGATCAGTGATGGA 59.152 47.619 11.20 0.00 0.00 3.41
365 366 2.445905 AGGCATTGGATCAGTGATGGAT 59.554 45.455 11.20 0.00 0.00 3.41
366 367 3.654321 AGGCATTGGATCAGTGATGGATA 59.346 43.478 11.20 0.00 0.00 2.59
367 368 4.105217 AGGCATTGGATCAGTGATGGATAA 59.895 41.667 11.20 0.68 0.00 1.75
368 369 5.014858 GGCATTGGATCAGTGATGGATAAT 58.985 41.667 11.20 3.02 0.00 1.28
369 370 5.479375 GGCATTGGATCAGTGATGGATAATT 59.521 40.000 11.20 0.00 0.00 1.40
370 371 6.660521 GGCATTGGATCAGTGATGGATAATTA 59.339 38.462 11.20 0.00 0.00 1.40
371 372 7.341256 GGCATTGGATCAGTGATGGATAATTAT 59.659 37.037 11.20 0.00 0.00 1.28
372 373 8.188799 GCATTGGATCAGTGATGGATAATTATG 58.811 37.037 11.20 4.26 0.00 1.90
373 374 9.239551 CATTGGATCAGTGATGGATAATTATGT 57.760 33.333 11.20 0.00 0.00 2.29
374 375 8.853077 TTGGATCAGTGATGGATAATTATGTC 57.147 34.615 11.20 0.00 0.00 3.06
375 376 7.099120 TGGATCAGTGATGGATAATTATGTCG 58.901 38.462 11.20 0.00 0.00 4.35
376 377 6.536582 GGATCAGTGATGGATAATTATGTCGG 59.463 42.308 11.20 0.00 0.00 4.79
377 378 6.664428 TCAGTGATGGATAATTATGTCGGA 57.336 37.500 1.78 0.00 0.00 4.55
378 379 7.244886 TCAGTGATGGATAATTATGTCGGAT 57.755 36.000 1.78 0.00 0.00 4.18
379 380 7.099120 TCAGTGATGGATAATTATGTCGGATG 58.901 38.462 1.78 0.49 0.00 3.51
380 381 5.877012 AGTGATGGATAATTATGTCGGATGC 59.123 40.000 1.78 0.00 0.00 3.91
381 382 4.869861 TGATGGATAATTATGTCGGATGCG 59.130 41.667 1.78 0.00 0.00 4.73
382 383 4.529109 TGGATAATTATGTCGGATGCGA 57.471 40.909 4.75 4.75 0.00 5.10
383 384 5.084818 TGGATAATTATGTCGGATGCGAT 57.915 39.130 13.85 0.00 0.00 4.58
384 385 5.487433 TGGATAATTATGTCGGATGCGATT 58.513 37.500 13.85 5.05 0.00 3.34
385 386 5.580691 TGGATAATTATGTCGGATGCGATTC 59.419 40.000 13.85 0.79 0.00 2.52
386 387 5.006746 GGATAATTATGTCGGATGCGATTCC 59.993 44.000 13.85 0.00 0.00 3.01
387 388 3.685139 ATTATGTCGGATGCGATTCCT 57.315 42.857 13.85 0.57 33.30 3.36
388 389 2.724977 TATGTCGGATGCGATTCCTC 57.275 50.000 13.85 0.00 33.30 3.71
389 390 0.752658 ATGTCGGATGCGATTCCTCA 59.247 50.000 13.85 5.92 33.30 3.86
390 391 0.752658 TGTCGGATGCGATTCCTCAT 59.247 50.000 13.85 0.00 33.30 2.90
391 392 1.143305 GTCGGATGCGATTCCTCATG 58.857 55.000 13.85 0.00 33.30 3.07
392 393 0.752658 TCGGATGCGATTCCTCATGT 59.247 50.000 4.75 0.00 33.30 3.21
393 394 1.960689 TCGGATGCGATTCCTCATGTA 59.039 47.619 4.75 0.00 33.30 2.29
394 395 2.364002 TCGGATGCGATTCCTCATGTAA 59.636 45.455 4.75 0.00 33.30 2.41
395 396 3.006859 TCGGATGCGATTCCTCATGTAAT 59.993 43.478 4.75 0.00 33.30 1.89
396 397 4.219725 TCGGATGCGATTCCTCATGTAATA 59.780 41.667 4.75 0.00 33.30 0.98
397 398 4.564372 CGGATGCGATTCCTCATGTAATAG 59.436 45.833 0.00 0.00 33.30 1.73
398 399 5.482908 GGATGCGATTCCTCATGTAATAGT 58.517 41.667 0.00 0.00 32.68 2.12
399 400 5.934625 GGATGCGATTCCTCATGTAATAGTT 59.065 40.000 0.00 0.00 32.68 2.24
400 401 7.097192 GGATGCGATTCCTCATGTAATAGTTA 58.903 38.462 0.00 0.00 32.68 2.24
401 402 7.766278 GGATGCGATTCCTCATGTAATAGTTAT 59.234 37.037 0.00 0.00 32.68 1.89
402 403 9.803315 GATGCGATTCCTCATGTAATAGTTATA 57.197 33.333 0.00 0.00 0.00 0.98
404 405 9.419297 TGCGATTCCTCATGTAATAGTTATAAC 57.581 33.333 7.57 7.57 0.00 1.89
405 406 9.419297 GCGATTCCTCATGTAATAGTTATAACA 57.581 33.333 17.65 4.52 0.00 2.41
419 420 8.777578 ATAGTTATAACATAGGGTGACACAGA 57.222 34.615 17.65 0.00 0.00 3.41
420 421 7.490657 AGTTATAACATAGGGTGACACAGAA 57.509 36.000 17.65 0.00 0.00 3.02
421 422 7.328737 AGTTATAACATAGGGTGACACAGAAC 58.671 38.462 17.65 0.00 0.00 3.01
422 423 7.180408 AGTTATAACATAGGGTGACACAGAACT 59.820 37.037 17.65 0.60 0.00 3.01
423 424 8.472413 GTTATAACATAGGGTGACACAGAACTA 58.528 37.037 10.81 4.69 0.00 2.24
424 425 5.407407 AACATAGGGTGACACAGAACTAG 57.593 43.478 8.08 0.00 0.00 2.57
425 426 3.195825 ACATAGGGTGACACAGAACTAGC 59.804 47.826 8.08 0.00 0.00 3.42
426 427 2.016905 AGGGTGACACAGAACTAGCT 57.983 50.000 8.08 0.00 0.00 3.32
427 428 2.330216 AGGGTGACACAGAACTAGCTT 58.670 47.619 8.08 0.00 0.00 3.74
428 429 2.300437 AGGGTGACACAGAACTAGCTTC 59.700 50.000 8.08 0.00 0.00 3.86
429 430 2.037251 GGGTGACACAGAACTAGCTTCA 59.963 50.000 8.08 0.00 0.00 3.02
430 431 3.321497 GGTGACACAGAACTAGCTTCAG 58.679 50.000 8.08 0.00 0.00 3.02
431 432 3.243907 GGTGACACAGAACTAGCTTCAGT 60.244 47.826 8.08 0.00 0.00 3.41
432 433 4.372656 GTGACACAGAACTAGCTTCAGTT 58.627 43.478 1.40 1.40 41.44 3.16
444 445 8.798859 AACTAGCTTCAGTTCATCAATGTAAT 57.201 30.769 0.00 0.00 33.41 1.89
445 446 8.206325 ACTAGCTTCAGTTCATCAATGTAATG 57.794 34.615 0.00 0.00 0.00 1.90
446 447 7.826252 ACTAGCTTCAGTTCATCAATGTAATGT 59.174 33.333 0.00 0.00 0.00 2.71
447 448 9.317936 CTAGCTTCAGTTCATCAATGTAATGTA 57.682 33.333 0.00 0.00 0.00 2.29
448 449 8.206325 AGCTTCAGTTCATCAATGTAATGTAG 57.794 34.615 0.00 1.37 0.00 2.74
449 450 7.281774 AGCTTCAGTTCATCAATGTAATGTAGG 59.718 37.037 6.08 0.00 0.00 3.18
450 451 6.925610 TCAGTTCATCAATGTAATGTAGGC 57.074 37.500 0.00 0.00 0.00 3.93
451 452 6.413892 TCAGTTCATCAATGTAATGTAGGCA 58.586 36.000 0.00 0.00 0.00 4.75
452 453 7.056006 TCAGTTCATCAATGTAATGTAGGCAT 58.944 34.615 0.00 0.00 36.80 4.40
453 454 7.012610 TCAGTTCATCAATGTAATGTAGGCATG 59.987 37.037 0.00 0.00 35.15 4.06
467 468 5.800296 TGTAGGCATGTAGCTTTAGTTGAA 58.200 37.500 0.00 0.00 44.79 2.69
468 469 6.414732 TGTAGGCATGTAGCTTTAGTTGAAT 58.585 36.000 0.00 0.00 44.79 2.57
776 784 0.375106 GGCTTATGCGAGCAACACTC 59.625 55.000 0.57 0.00 44.49 3.51
990 999 2.891580 TGGTTACTCTCACACTCCAGAC 59.108 50.000 0.00 0.00 0.00 3.51
1297 1315 3.751246 CCCATGTGCAAGTGCCCG 61.751 66.667 0.00 0.00 41.18 6.13
1418 1436 8.102047 AGATGAAATGAAGAAGATCAAGAGTGT 58.898 33.333 0.00 0.00 32.06 3.55
1506 1525 2.761071 GCTAGAGCTGAGTGTTGCC 58.239 57.895 0.00 0.00 38.21 4.52
1577 1596 2.836981 AGCAAGATAGCAAGAGTCCAGT 59.163 45.455 0.00 0.00 36.85 4.00
2221 2240 0.419865 TGACATTCCCTGGGACCCTA 59.580 55.000 16.85 0.00 0.00 3.53
2372 2398 5.721232 CGAGACCTACATCATATAAACCCC 58.279 45.833 0.00 0.00 0.00 4.95
2378 2404 5.011738 CCTACATCATATAAACCCCGTGAGT 59.988 44.000 0.00 0.00 0.00 3.41
2392 2418 2.494059 CGTGAGTTGTTTCATGACCCT 58.506 47.619 0.00 0.00 36.42 4.34
2535 2561 2.287644 TGTGAACTGAGTGTTGAATGCG 59.712 45.455 0.00 0.00 39.30 4.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.988839 GCCATCTCACCCCAGCCTT 61.989 63.158 0.00 0.00 0.00 4.35
2 3 3.415087 GCCATCTCACCCCAGCCT 61.415 66.667 0.00 0.00 0.00 4.58
3 4 4.512914 GGCCATCTCACCCCAGCC 62.513 72.222 0.00 0.00 0.00 4.85
4 5 2.049627 CTAGGCCATCTCACCCCAGC 62.050 65.000 5.01 0.00 0.00 4.85
5 6 0.692419 ACTAGGCCATCTCACCCCAG 60.692 60.000 5.01 0.00 0.00 4.45
6 7 0.691078 GACTAGGCCATCTCACCCCA 60.691 60.000 5.01 0.00 0.00 4.96
7 8 1.749334 CGACTAGGCCATCTCACCCC 61.749 65.000 5.01 0.00 0.00 4.95
8 9 1.742768 CGACTAGGCCATCTCACCC 59.257 63.158 5.01 0.00 0.00 4.61
9 10 1.068250 GCGACTAGGCCATCTCACC 59.932 63.158 5.01 0.00 0.00 4.02
10 11 0.528684 GTGCGACTAGGCCATCTCAC 60.529 60.000 5.01 7.29 0.00 3.51
11 12 0.970427 TGTGCGACTAGGCCATCTCA 60.970 55.000 5.01 0.00 0.00 3.27
12 13 0.249238 CTGTGCGACTAGGCCATCTC 60.249 60.000 5.01 0.00 0.00 2.75
13 14 0.684479 TCTGTGCGACTAGGCCATCT 60.684 55.000 5.01 0.00 0.00 2.90
14 15 0.249238 CTCTGTGCGACTAGGCCATC 60.249 60.000 5.01 0.00 0.00 3.51
15 16 1.680522 CCTCTGTGCGACTAGGCCAT 61.681 60.000 5.01 0.00 0.00 4.40
16 17 2.351244 CCTCTGTGCGACTAGGCCA 61.351 63.158 5.01 0.00 0.00 5.36
17 18 2.496817 CCTCTGTGCGACTAGGCC 59.503 66.667 0.00 0.00 0.00 5.19
44 45 2.906182 TTATCACTGCCGCTCTGCCG 62.906 60.000 0.00 0.00 0.00 5.69
45 46 1.153369 TTATCACTGCCGCTCTGCC 60.153 57.895 0.00 0.00 0.00 4.85
46 47 1.432270 GGTTATCACTGCCGCTCTGC 61.432 60.000 0.00 0.00 0.00 4.26
47 48 0.811616 GGGTTATCACTGCCGCTCTG 60.812 60.000 0.00 0.00 0.00 3.35
48 49 1.264749 TGGGTTATCACTGCCGCTCT 61.265 55.000 0.00 0.00 0.00 4.09
49 50 1.090052 GTGGGTTATCACTGCCGCTC 61.090 60.000 0.00 0.00 34.98 5.03
50 51 1.078426 GTGGGTTATCACTGCCGCT 60.078 57.895 0.00 0.00 34.98 5.52
51 52 0.958382 TTGTGGGTTATCACTGCCGC 60.958 55.000 0.00 0.00 38.40 6.53
52 53 1.086696 CTTGTGGGTTATCACTGCCG 58.913 55.000 0.00 0.00 38.40 5.69
53 54 2.200373 ACTTGTGGGTTATCACTGCC 57.800 50.000 0.00 0.00 38.40 4.85
54 55 5.057149 CCTATACTTGTGGGTTATCACTGC 58.943 45.833 0.00 0.00 38.40 4.40
55 56 5.454755 CCCCTATACTTGTGGGTTATCACTG 60.455 48.000 0.00 0.00 39.31 3.66
56 57 4.658901 CCCCTATACTTGTGGGTTATCACT 59.341 45.833 0.00 0.00 39.31 3.41
57 58 4.657039 TCCCCTATACTTGTGGGTTATCAC 59.343 45.833 0.00 0.00 39.31 3.06
58 59 4.898268 TCCCCTATACTTGTGGGTTATCA 58.102 43.478 0.00 0.00 39.31 2.15
59 60 5.337330 CGATCCCCTATACTTGTGGGTTATC 60.337 48.000 0.00 0.00 39.31 1.75
60 61 4.530946 CGATCCCCTATACTTGTGGGTTAT 59.469 45.833 0.00 0.00 39.31 1.89
61 62 3.899360 CGATCCCCTATACTTGTGGGTTA 59.101 47.826 0.00 0.00 39.31 2.85
62 63 2.704065 CGATCCCCTATACTTGTGGGTT 59.296 50.000 0.00 0.00 39.31 4.11
63 64 2.326428 CGATCCCCTATACTTGTGGGT 58.674 52.381 0.00 0.00 39.31 4.51
64 65 1.002087 GCGATCCCCTATACTTGTGGG 59.998 57.143 0.00 0.00 40.59 4.61
65 66 1.691976 TGCGATCCCCTATACTTGTGG 59.308 52.381 0.00 0.00 0.00 4.17
66 67 3.131396 GTTGCGATCCCCTATACTTGTG 58.869 50.000 0.00 0.00 0.00 3.33
67 68 2.769663 TGTTGCGATCCCCTATACTTGT 59.230 45.455 0.00 0.00 0.00 3.16
68 69 3.181465 ACTGTTGCGATCCCCTATACTTG 60.181 47.826 0.00 0.00 0.00 3.16
69 70 3.039011 ACTGTTGCGATCCCCTATACTT 58.961 45.455 0.00 0.00 0.00 2.24
70 71 2.679082 ACTGTTGCGATCCCCTATACT 58.321 47.619 0.00 0.00 0.00 2.12
71 72 3.470645 AACTGTTGCGATCCCCTATAC 57.529 47.619 0.00 0.00 0.00 1.47
72 73 4.448210 GAAAACTGTTGCGATCCCCTATA 58.552 43.478 0.00 0.00 0.00 1.31
73 74 3.279434 GAAAACTGTTGCGATCCCCTAT 58.721 45.455 0.00 0.00 0.00 2.57
74 75 2.706890 GAAAACTGTTGCGATCCCCTA 58.293 47.619 0.00 0.00 0.00 3.53
75 76 1.534729 GAAAACTGTTGCGATCCCCT 58.465 50.000 0.00 0.00 0.00 4.79
76 77 0.168128 CGAAAACTGTTGCGATCCCC 59.832 55.000 9.57 0.00 38.11 4.81
77 78 1.128692 CTCGAAAACTGTTGCGATCCC 59.871 52.381 15.79 0.00 43.94 3.85
78 79 1.128692 CCTCGAAAACTGTTGCGATCC 59.871 52.381 15.79 0.00 43.94 3.36
79 80 2.066262 TCCTCGAAAACTGTTGCGATC 58.934 47.619 15.79 3.49 43.94 3.69
80 81 2.163818 TCCTCGAAAACTGTTGCGAT 57.836 45.000 15.79 0.00 43.94 4.58
81 82 2.163818 ATCCTCGAAAACTGTTGCGA 57.836 45.000 14.99 14.99 42.74 5.10
82 83 3.250744 TCTATCCTCGAAAACTGTTGCG 58.749 45.455 9.05 9.05 37.10 4.85
83 84 4.246458 ACTCTATCCTCGAAAACTGTTGC 58.754 43.478 0.00 0.00 0.00 4.17
84 85 7.759886 TGAATACTCTATCCTCGAAAACTGTTG 59.240 37.037 0.00 0.00 0.00 3.33
85 86 7.837863 TGAATACTCTATCCTCGAAAACTGTT 58.162 34.615 0.00 0.00 0.00 3.16
86 87 7.406031 TGAATACTCTATCCTCGAAAACTGT 57.594 36.000 0.00 0.00 0.00 3.55
87 88 7.222999 GGTTGAATACTCTATCCTCGAAAACTG 59.777 40.741 0.00 0.00 0.00 3.16
88 89 7.266400 GGTTGAATACTCTATCCTCGAAAACT 58.734 38.462 0.00 0.00 0.00 2.66
89 90 6.479331 GGGTTGAATACTCTATCCTCGAAAAC 59.521 42.308 0.00 0.00 0.00 2.43
90 91 6.155565 TGGGTTGAATACTCTATCCTCGAAAA 59.844 38.462 0.00 0.00 29.64 2.29
91 92 5.659525 TGGGTTGAATACTCTATCCTCGAAA 59.340 40.000 0.00 0.00 29.64 3.46
92 93 5.205821 TGGGTTGAATACTCTATCCTCGAA 58.794 41.667 0.00 0.00 29.64 3.71
93 94 4.800023 TGGGTTGAATACTCTATCCTCGA 58.200 43.478 0.00 0.00 29.64 4.04
94 95 5.531122 TTGGGTTGAATACTCTATCCTCG 57.469 43.478 0.00 0.00 29.64 4.63
95 96 8.753497 AAATTTGGGTTGAATACTCTATCCTC 57.247 34.615 0.00 0.00 29.64 3.71
103 104 9.889128 CCAATCAATAAATTTGGGTTGAATACT 57.111 29.630 15.01 2.31 36.96 2.12
104 105 9.883142 TCCAATCAATAAATTTGGGTTGAATAC 57.117 29.630 15.01 0.00 40.26 1.89
105 106 9.883142 GTCCAATCAATAAATTTGGGTTGAATA 57.117 29.630 15.01 4.16 40.26 1.75
106 107 8.381636 TGTCCAATCAATAAATTTGGGTTGAAT 58.618 29.630 15.01 7.91 40.26 2.57
107 108 7.659390 GTGTCCAATCAATAAATTTGGGTTGAA 59.341 33.333 15.01 0.00 40.26 2.69
108 109 7.158021 GTGTCCAATCAATAAATTTGGGTTGA 58.842 34.615 14.00 14.00 40.26 3.18
109 110 6.933521 TGTGTCCAATCAATAAATTTGGGTTG 59.066 34.615 0.00 3.50 40.26 3.77
110 111 7.072263 TGTGTCCAATCAATAAATTTGGGTT 57.928 32.000 0.00 0.00 40.26 4.11
111 112 6.678568 TGTGTCCAATCAATAAATTTGGGT 57.321 33.333 0.00 0.00 40.26 4.51
112 113 6.594937 CCTTGTGTCCAATCAATAAATTTGGG 59.405 38.462 0.00 0.00 40.26 4.12
113 114 6.594937 CCCTTGTGTCCAATCAATAAATTTGG 59.405 38.462 0.00 0.00 41.04 3.28
114 115 6.594937 CCCCTTGTGTCCAATCAATAAATTTG 59.405 38.462 0.00 0.00 0.00 2.32
115 116 6.500049 TCCCCTTGTGTCCAATCAATAAATTT 59.500 34.615 0.00 0.00 0.00 1.82
116 117 6.022315 TCCCCTTGTGTCCAATCAATAAATT 58.978 36.000 0.00 0.00 0.00 1.82
117 118 5.588845 TCCCCTTGTGTCCAATCAATAAAT 58.411 37.500 0.00 0.00 0.00 1.40
118 119 5.004361 TCCCCTTGTGTCCAATCAATAAA 57.996 39.130 0.00 0.00 0.00 1.40
119 120 4.599041 CTCCCCTTGTGTCCAATCAATAA 58.401 43.478 0.00 0.00 0.00 1.40
120 121 3.624707 GCTCCCCTTGTGTCCAATCAATA 60.625 47.826 0.00 0.00 0.00 1.90
121 122 2.885554 GCTCCCCTTGTGTCCAATCAAT 60.886 50.000 0.00 0.00 0.00 2.57
122 123 1.547675 GCTCCCCTTGTGTCCAATCAA 60.548 52.381 0.00 0.00 0.00 2.57
123 124 0.038166 GCTCCCCTTGTGTCCAATCA 59.962 55.000 0.00 0.00 0.00 2.57
124 125 0.681243 GGCTCCCCTTGTGTCCAATC 60.681 60.000 0.00 0.00 0.00 2.67
125 126 1.384191 GGCTCCCCTTGTGTCCAAT 59.616 57.895 0.00 0.00 0.00 3.16
126 127 1.650242 TTGGCTCCCCTTGTGTCCAA 61.650 55.000 0.00 0.00 0.00 3.53
127 128 1.650242 TTTGGCTCCCCTTGTGTCCA 61.650 55.000 0.00 0.00 0.00 4.02
128 129 0.895559 CTTTGGCTCCCCTTGTGTCC 60.896 60.000 0.00 0.00 0.00 4.02
129 130 0.110486 TCTTTGGCTCCCCTTGTGTC 59.890 55.000 0.00 0.00 0.00 3.67
130 131 0.555769 TTCTTTGGCTCCCCTTGTGT 59.444 50.000 0.00 0.00 0.00 3.72
131 132 1.928868 ATTCTTTGGCTCCCCTTGTG 58.071 50.000 0.00 0.00 0.00 3.33
132 133 4.017130 AGAATATTCTTTGGCTCCCCTTGT 60.017 41.667 12.37 0.00 32.55 3.16
133 134 4.540715 AGAATATTCTTTGGCTCCCCTTG 58.459 43.478 12.37 0.00 32.55 3.61
134 135 4.230502 TGAGAATATTCTTTGGCTCCCCTT 59.769 41.667 18.88 0.00 37.73 3.95
135 136 3.788142 TGAGAATATTCTTTGGCTCCCCT 59.212 43.478 18.88 0.00 37.73 4.79
136 137 4.170468 TGAGAATATTCTTTGGCTCCCC 57.830 45.455 18.88 4.05 37.73 4.81
137 138 5.196695 ACTTGAGAATATTCTTTGGCTCCC 58.803 41.667 18.88 4.72 37.73 4.30
138 139 8.457238 AATACTTGAGAATATTCTTTGGCTCC 57.543 34.615 18.88 5.41 37.73 4.70
140 141 9.061435 GCTAATACTTGAGAATATTCTTTGGCT 57.939 33.333 18.88 4.55 37.73 4.75
141 142 8.840321 TGCTAATACTTGAGAATATTCTTTGGC 58.160 33.333 18.88 18.99 37.73 4.52
150 151 9.371136 CAACTCAACTGCTAATACTTGAGAATA 57.629 33.333 12.09 0.00 41.42 1.75
151 152 7.880195 ACAACTCAACTGCTAATACTTGAGAAT 59.120 33.333 12.09 0.14 41.42 2.40
152 153 7.217200 ACAACTCAACTGCTAATACTTGAGAA 58.783 34.615 12.09 0.00 41.42 2.87
153 154 6.759272 ACAACTCAACTGCTAATACTTGAGA 58.241 36.000 12.09 0.00 41.42 3.27
154 155 6.646653 TGACAACTCAACTGCTAATACTTGAG 59.353 38.462 4.99 4.99 43.51 3.02
155 156 6.521162 TGACAACTCAACTGCTAATACTTGA 58.479 36.000 0.00 0.00 0.00 3.02
156 157 6.785488 TGACAACTCAACTGCTAATACTTG 57.215 37.500 0.00 0.00 0.00 3.16
157 158 7.986085 ATTGACAACTCAACTGCTAATACTT 57.014 32.000 0.00 0.00 39.28 2.24
158 159 7.661437 TGAATTGACAACTCAACTGCTAATACT 59.339 33.333 0.00 0.00 39.28 2.12
159 160 7.806690 TGAATTGACAACTCAACTGCTAATAC 58.193 34.615 0.00 0.00 39.28 1.89
160 161 7.977789 TGAATTGACAACTCAACTGCTAATA 57.022 32.000 0.00 0.00 39.28 0.98
161 162 6.882610 TGAATTGACAACTCAACTGCTAAT 57.117 33.333 0.00 0.00 39.28 1.73
162 163 6.691754 TTGAATTGACAACTCAACTGCTAA 57.308 33.333 7.94 0.00 39.28 3.09
163 164 5.277974 GCTTGAATTGACAACTCAACTGCTA 60.278 40.000 7.94 0.00 39.28 3.49
164 165 4.498682 GCTTGAATTGACAACTCAACTGCT 60.499 41.667 7.94 0.00 39.28 4.24
165 166 3.732721 GCTTGAATTGACAACTCAACTGC 59.267 43.478 7.94 7.72 39.28 4.40
166 167 4.736793 GTGCTTGAATTGACAACTCAACTG 59.263 41.667 7.94 1.73 39.28 3.16
167 168 4.398988 TGTGCTTGAATTGACAACTCAACT 59.601 37.500 7.94 0.00 39.28 3.16
168 169 4.500477 GTGTGCTTGAATTGACAACTCAAC 59.500 41.667 7.94 6.52 39.28 3.18
169 170 4.439974 GGTGTGCTTGAATTGACAACTCAA 60.440 41.667 11.27 11.27 40.77 3.02
170 171 3.066621 GGTGTGCTTGAATTGACAACTCA 59.933 43.478 0.00 0.00 0.00 3.41
171 172 3.316308 AGGTGTGCTTGAATTGACAACTC 59.684 43.478 0.00 0.00 30.34 3.01
172 173 3.067180 CAGGTGTGCTTGAATTGACAACT 59.933 43.478 0.00 0.00 36.80 3.16
173 174 3.374745 CAGGTGTGCTTGAATTGACAAC 58.625 45.455 0.00 0.00 0.00 3.32
174 175 2.361757 CCAGGTGTGCTTGAATTGACAA 59.638 45.455 0.00 0.00 0.00 3.18
175 176 1.955778 CCAGGTGTGCTTGAATTGACA 59.044 47.619 0.00 0.00 0.00 3.58
176 177 2.229792 TCCAGGTGTGCTTGAATTGAC 58.770 47.619 0.00 0.00 0.00 3.18
177 178 2.655090 TCCAGGTGTGCTTGAATTGA 57.345 45.000 0.00 0.00 0.00 2.57
178 179 4.460382 AGTTATCCAGGTGTGCTTGAATTG 59.540 41.667 0.00 0.00 0.00 2.32
179 180 4.666512 AGTTATCCAGGTGTGCTTGAATT 58.333 39.130 0.00 0.00 0.00 2.17
180 181 4.307032 AGTTATCCAGGTGTGCTTGAAT 57.693 40.909 0.00 0.00 0.00 2.57
181 182 3.788227 AGTTATCCAGGTGTGCTTGAA 57.212 42.857 0.00 0.00 0.00 2.69
182 183 3.788227 AAGTTATCCAGGTGTGCTTGA 57.212 42.857 0.00 0.00 0.00 3.02
183 184 4.579869 ACTAAGTTATCCAGGTGTGCTTG 58.420 43.478 0.00 0.00 0.00 4.01
184 185 4.910458 ACTAAGTTATCCAGGTGTGCTT 57.090 40.909 0.00 0.00 0.00 3.91
185 186 5.900123 AGATACTAAGTTATCCAGGTGTGCT 59.100 40.000 0.00 0.00 0.00 4.40
186 187 5.986135 CAGATACTAAGTTATCCAGGTGTGC 59.014 44.000 0.00 0.00 0.00 4.57
187 188 5.986135 GCAGATACTAAGTTATCCAGGTGTG 59.014 44.000 0.00 0.00 0.00 3.82
188 189 5.900123 AGCAGATACTAAGTTATCCAGGTGT 59.100 40.000 0.00 0.00 0.00 4.16
189 190 6.219473 CAGCAGATACTAAGTTATCCAGGTG 58.781 44.000 0.00 0.00 0.00 4.00
190 191 5.221541 GCAGCAGATACTAAGTTATCCAGGT 60.222 44.000 0.00 0.00 0.00 4.00
191 192 5.221521 TGCAGCAGATACTAAGTTATCCAGG 60.222 44.000 0.00 0.00 0.00 4.45
192 193 5.847304 TGCAGCAGATACTAAGTTATCCAG 58.153 41.667 0.00 0.00 0.00 3.86
193 194 5.869649 TGCAGCAGATACTAAGTTATCCA 57.130 39.130 0.00 0.00 0.00 3.41
194 195 6.763610 ACTTTGCAGCAGATACTAAGTTATCC 59.236 38.462 2.58 0.00 0.00 2.59
195 196 7.778470 ACTTTGCAGCAGATACTAAGTTATC 57.222 36.000 2.58 0.00 0.00 1.75
196 197 9.838339 AATACTTTGCAGCAGATACTAAGTTAT 57.162 29.630 12.09 1.48 32.85 1.89
197 198 9.667107 AAATACTTTGCAGCAGATACTAAGTTA 57.333 29.630 12.09 1.78 32.85 2.24
198 199 8.567285 AAATACTTTGCAGCAGATACTAAGTT 57.433 30.769 12.09 0.63 32.85 2.66
199 200 9.319143 CTAAATACTTTGCAGCAGATACTAAGT 57.681 33.333 11.65 11.65 34.55 2.24
200 201 9.319143 ACTAAATACTTTGCAGCAGATACTAAG 57.681 33.333 0.00 0.00 0.00 2.18
203 204 9.099454 GTTACTAAATACTTTGCAGCAGATACT 57.901 33.333 0.00 0.00 0.00 2.12
204 205 8.879759 TGTTACTAAATACTTTGCAGCAGATAC 58.120 33.333 0.00 0.00 0.00 2.24
205 206 9.443323 TTGTTACTAAATACTTTGCAGCAGATA 57.557 29.630 0.00 0.00 0.00 1.98
206 207 7.921786 TGTTACTAAATACTTTGCAGCAGAT 57.078 32.000 0.00 0.00 0.00 2.90
207 208 7.737972 TTGTTACTAAATACTTTGCAGCAGA 57.262 32.000 0.00 0.00 0.00 4.26
208 209 8.970691 ATTTGTTACTAAATACTTTGCAGCAG 57.029 30.769 0.00 0.00 0.00 4.24
210 211 9.010366 GCTATTTGTTACTAAATACTTTGCAGC 57.990 33.333 0.00 0.00 32.79 5.25
222 223 8.875803 CGTTACTTCCATGCTATTTGTTACTAA 58.124 33.333 0.00 0.00 0.00 2.24
223 224 7.493320 CCGTTACTTCCATGCTATTTGTTACTA 59.507 37.037 0.00 0.00 0.00 1.82
224 225 6.315393 CCGTTACTTCCATGCTATTTGTTACT 59.685 38.462 0.00 0.00 0.00 2.24
225 226 6.093082 ACCGTTACTTCCATGCTATTTGTTAC 59.907 38.462 0.00 0.00 0.00 2.50
226 227 6.174760 ACCGTTACTTCCATGCTATTTGTTA 58.825 36.000 0.00 0.00 0.00 2.41
227 228 5.007682 ACCGTTACTTCCATGCTATTTGTT 58.992 37.500 0.00 0.00 0.00 2.83
228 229 4.585879 ACCGTTACTTCCATGCTATTTGT 58.414 39.130 0.00 0.00 0.00 2.83
229 230 6.092944 TGTTACCGTTACTTCCATGCTATTTG 59.907 38.462 0.00 0.00 0.00 2.32
230 231 6.174760 TGTTACCGTTACTTCCATGCTATTT 58.825 36.000 0.00 0.00 0.00 1.40
231 232 5.736813 TGTTACCGTTACTTCCATGCTATT 58.263 37.500 0.00 0.00 0.00 1.73
232 233 5.105064 ACTGTTACCGTTACTTCCATGCTAT 60.105 40.000 0.00 0.00 0.00 2.97
233 234 4.221262 ACTGTTACCGTTACTTCCATGCTA 59.779 41.667 0.00 0.00 0.00 3.49
234 235 3.007614 ACTGTTACCGTTACTTCCATGCT 59.992 43.478 0.00 0.00 0.00 3.79
235 236 3.124636 CACTGTTACCGTTACTTCCATGC 59.875 47.826 0.00 0.00 0.00 4.06
236 237 3.682858 CCACTGTTACCGTTACTTCCATG 59.317 47.826 0.00 0.00 0.00 3.66
237 238 3.867216 GCCACTGTTACCGTTACTTCCAT 60.867 47.826 0.00 0.00 0.00 3.41
238 239 2.548493 GCCACTGTTACCGTTACTTCCA 60.548 50.000 0.00 0.00 0.00 3.53
239 240 2.071540 GCCACTGTTACCGTTACTTCC 58.928 52.381 0.00 0.00 0.00 3.46
240 241 2.758009 TGCCACTGTTACCGTTACTTC 58.242 47.619 0.00 0.00 0.00 3.01
241 242 2.914695 TGCCACTGTTACCGTTACTT 57.085 45.000 0.00 0.00 0.00 2.24
242 243 2.914695 TTGCCACTGTTACCGTTACT 57.085 45.000 0.00 0.00 0.00 2.24
243 244 2.224784 CCTTTGCCACTGTTACCGTTAC 59.775 50.000 0.00 0.00 0.00 2.50
244 245 2.158784 ACCTTTGCCACTGTTACCGTTA 60.159 45.455 0.00 0.00 0.00 3.18
245 246 1.314730 CCTTTGCCACTGTTACCGTT 58.685 50.000 0.00 0.00 0.00 4.44
246 247 0.181824 ACCTTTGCCACTGTTACCGT 59.818 50.000 0.00 0.00 0.00 4.83
247 248 2.172851 TACCTTTGCCACTGTTACCG 57.827 50.000 0.00 0.00 0.00 4.02
248 249 2.224784 CGTTACCTTTGCCACTGTTACC 59.775 50.000 0.00 0.00 0.00 2.85
249 250 3.132925 TCGTTACCTTTGCCACTGTTAC 58.867 45.455 0.00 0.00 0.00 2.50
250 251 3.472283 TCGTTACCTTTGCCACTGTTA 57.528 42.857 0.00 0.00 0.00 2.41
251 252 2.335316 TCGTTACCTTTGCCACTGTT 57.665 45.000 0.00 0.00 0.00 3.16
252 253 2.561478 ATCGTTACCTTTGCCACTGT 57.439 45.000 0.00 0.00 0.00 3.55
253 254 2.351726 GCTATCGTTACCTTTGCCACTG 59.648 50.000 0.00 0.00 0.00 3.66
254 255 2.236395 AGCTATCGTTACCTTTGCCACT 59.764 45.455 0.00 0.00 0.00 4.00
255 256 2.351726 CAGCTATCGTTACCTTTGCCAC 59.648 50.000 0.00 0.00 0.00 5.01
256 257 2.027561 ACAGCTATCGTTACCTTTGCCA 60.028 45.455 0.00 0.00 0.00 4.92
257 258 2.629051 ACAGCTATCGTTACCTTTGCC 58.371 47.619 0.00 0.00 0.00 4.52
258 259 4.680171 AAACAGCTATCGTTACCTTTGC 57.320 40.909 0.00 0.00 0.00 3.68
259 260 5.997385 ACAAAACAGCTATCGTTACCTTTG 58.003 37.500 0.00 0.00 0.00 2.77
260 261 6.932960 ACTACAAAACAGCTATCGTTACCTTT 59.067 34.615 0.00 0.00 0.00 3.11
261 262 6.461640 ACTACAAAACAGCTATCGTTACCTT 58.538 36.000 0.00 0.00 0.00 3.50
262 263 6.034161 ACTACAAAACAGCTATCGTTACCT 57.966 37.500 0.00 0.00 0.00 3.08
263 264 7.816945 TTACTACAAAACAGCTATCGTTACC 57.183 36.000 0.00 0.00 0.00 2.85
264 265 9.685005 CAATTACTACAAAACAGCTATCGTTAC 57.315 33.333 0.00 0.00 0.00 2.50
265 266 9.426837 ACAATTACTACAAAACAGCTATCGTTA 57.573 29.630 0.00 0.00 0.00 3.18
266 267 8.319143 ACAATTACTACAAAACAGCTATCGTT 57.681 30.769 0.00 0.00 0.00 3.85
267 268 7.900782 ACAATTACTACAAAACAGCTATCGT 57.099 32.000 0.00 0.00 0.00 3.73
268 269 9.685005 GTTACAATTACTACAAAACAGCTATCG 57.315 33.333 0.00 0.00 0.00 2.92
271 272 9.550406 ACTGTTACAATTACTACAAAACAGCTA 57.450 29.630 11.14 0.00 43.74 3.32
272 273 8.446599 ACTGTTACAATTACTACAAAACAGCT 57.553 30.769 11.14 0.00 43.74 4.24
273 274 9.807386 CTACTGTTACAATTACTACAAAACAGC 57.193 33.333 11.14 0.00 43.74 4.40
274 275 9.807386 GCTACTGTTACAATTACTACAAAACAG 57.193 33.333 9.97 9.97 44.83 3.16
275 276 9.327628 TGCTACTGTTACAATTACTACAAAACA 57.672 29.630 0.00 0.00 0.00 2.83
279 280 8.941977 CCATTGCTACTGTTACAATTACTACAA 58.058 33.333 5.53 0.00 31.82 2.41
280 281 8.098286 ACCATTGCTACTGTTACAATTACTACA 58.902 33.333 5.53 0.00 31.82 2.74
281 282 8.488651 ACCATTGCTACTGTTACAATTACTAC 57.511 34.615 5.53 0.00 31.82 2.73
283 284 8.943002 GTTACCATTGCTACTGTTACAATTACT 58.057 33.333 5.53 0.00 31.82 2.24
284 285 8.943002 AGTTACCATTGCTACTGTTACAATTAC 58.057 33.333 5.53 3.60 31.82 1.89
286 287 7.996098 AGTTACCATTGCTACTGTTACAATT 57.004 32.000 5.53 0.00 31.82 2.32
287 288 9.509956 TTTAGTTACCATTGCTACTGTTACAAT 57.490 29.630 3.07 3.07 34.42 2.71
288 289 8.905660 TTTAGTTACCATTGCTACTGTTACAA 57.094 30.769 0.00 0.00 0.00 2.41
292 293 8.674607 GCTTATTTAGTTACCATTGCTACTGTT 58.325 33.333 0.00 0.00 0.00 3.16
293 294 7.827236 TGCTTATTTAGTTACCATTGCTACTGT 59.173 33.333 0.00 0.00 0.00 3.55
294 295 8.208718 TGCTTATTTAGTTACCATTGCTACTG 57.791 34.615 0.00 0.00 0.00 2.74
295 296 8.801882 TTGCTTATTTAGTTACCATTGCTACT 57.198 30.769 0.00 0.00 0.00 2.57
296 297 9.503427 CTTTGCTTATTTAGTTACCATTGCTAC 57.497 33.333 0.00 0.00 0.00 3.58
297 298 8.188139 GCTTTGCTTATTTAGTTACCATTGCTA 58.812 33.333 0.00 0.00 0.00 3.49
298 299 7.035612 GCTTTGCTTATTTAGTTACCATTGCT 58.964 34.615 0.00 0.00 0.00 3.91
299 300 6.811170 TGCTTTGCTTATTTAGTTACCATTGC 59.189 34.615 0.00 0.00 0.00 3.56
300 301 7.812191 TGTGCTTTGCTTATTTAGTTACCATTG 59.188 33.333 0.00 0.00 0.00 2.82
301 302 7.891561 TGTGCTTTGCTTATTTAGTTACCATT 58.108 30.769 0.00 0.00 0.00 3.16
302 303 7.461182 TGTGCTTTGCTTATTTAGTTACCAT 57.539 32.000 0.00 0.00 0.00 3.55
303 304 6.885952 TGTGCTTTGCTTATTTAGTTACCA 57.114 33.333 0.00 0.00 0.00 3.25
307 308 9.357652 CACATATTGTGCTTTGCTTATTTAGTT 57.642 29.630 0.00 0.00 41.89 2.24
308 309 8.915871 CACATATTGTGCTTTGCTTATTTAGT 57.084 30.769 0.00 0.00 41.89 2.24
324 325 4.332819 GCCTACGAGCTTTTCACATATTGT 59.667 41.667 0.00 0.00 0.00 2.71
325 326 4.332543 TGCCTACGAGCTTTTCACATATTG 59.667 41.667 0.00 0.00 0.00 1.90
326 327 4.513442 TGCCTACGAGCTTTTCACATATT 58.487 39.130 0.00 0.00 0.00 1.28
327 328 4.137116 TGCCTACGAGCTTTTCACATAT 57.863 40.909 0.00 0.00 0.00 1.78
328 329 3.603158 TGCCTACGAGCTTTTCACATA 57.397 42.857 0.00 0.00 0.00 2.29
329 330 2.472695 TGCCTACGAGCTTTTCACAT 57.527 45.000 0.00 0.00 0.00 3.21
330 331 2.472695 ATGCCTACGAGCTTTTCACA 57.527 45.000 0.00 0.00 0.00 3.58
331 332 2.159517 CCAATGCCTACGAGCTTTTCAC 60.160 50.000 0.00 0.00 0.00 3.18
332 333 2.083774 CCAATGCCTACGAGCTTTTCA 58.916 47.619 0.00 0.00 0.00 2.69
333 334 2.356135 TCCAATGCCTACGAGCTTTTC 58.644 47.619 0.00 0.00 0.00 2.29
334 335 2.489938 TCCAATGCCTACGAGCTTTT 57.510 45.000 0.00 0.00 0.00 2.27
335 336 2.092968 TGATCCAATGCCTACGAGCTTT 60.093 45.455 0.00 0.00 0.00 3.51
336 337 1.486310 TGATCCAATGCCTACGAGCTT 59.514 47.619 0.00 0.00 0.00 3.74
337 338 1.069823 CTGATCCAATGCCTACGAGCT 59.930 52.381 0.00 0.00 0.00 4.09
338 339 1.202580 ACTGATCCAATGCCTACGAGC 60.203 52.381 0.00 0.00 0.00 5.03
339 340 2.101415 TCACTGATCCAATGCCTACGAG 59.899 50.000 0.00 0.00 0.00 4.18
340 341 2.107366 TCACTGATCCAATGCCTACGA 58.893 47.619 0.00 0.00 0.00 3.43
341 342 2.602257 TCACTGATCCAATGCCTACG 57.398 50.000 0.00 0.00 0.00 3.51
342 343 3.144506 CCATCACTGATCCAATGCCTAC 58.855 50.000 0.00 0.00 0.00 3.18
343 344 3.047857 TCCATCACTGATCCAATGCCTA 58.952 45.455 0.00 0.00 0.00 3.93
344 345 1.848388 TCCATCACTGATCCAATGCCT 59.152 47.619 0.00 0.00 0.00 4.75
345 346 2.353357 TCCATCACTGATCCAATGCC 57.647 50.000 0.00 0.00 0.00 4.40
346 347 6.585695 AATTATCCATCACTGATCCAATGC 57.414 37.500 0.00 0.00 0.00 3.56
347 348 9.239551 ACATAATTATCCATCACTGATCCAATG 57.760 33.333 0.00 0.00 0.00 2.82
348 349 9.458727 GACATAATTATCCATCACTGATCCAAT 57.541 33.333 0.00 0.00 0.00 3.16
349 350 7.603784 CGACATAATTATCCATCACTGATCCAA 59.396 37.037 0.00 0.00 0.00 3.53
350 351 7.099120 CGACATAATTATCCATCACTGATCCA 58.901 38.462 0.00 0.00 0.00 3.41
351 352 6.536582 CCGACATAATTATCCATCACTGATCC 59.463 42.308 0.00 0.00 0.00 3.36
352 353 7.323420 TCCGACATAATTATCCATCACTGATC 58.677 38.462 0.00 0.00 0.00 2.92
353 354 7.244886 TCCGACATAATTATCCATCACTGAT 57.755 36.000 0.00 0.00 0.00 2.90
354 355 6.664428 TCCGACATAATTATCCATCACTGA 57.336 37.500 0.00 0.00 0.00 3.41
355 356 6.183360 GCATCCGACATAATTATCCATCACTG 60.183 42.308 0.00 0.00 0.00 3.66
356 357 5.877012 GCATCCGACATAATTATCCATCACT 59.123 40.000 0.00 0.00 0.00 3.41
357 358 5.220472 CGCATCCGACATAATTATCCATCAC 60.220 44.000 0.00 0.00 36.29 3.06
358 359 4.869861 CGCATCCGACATAATTATCCATCA 59.130 41.667 0.00 0.00 36.29 3.07
359 360 5.109210 TCGCATCCGACATAATTATCCATC 58.891 41.667 0.00 0.00 38.82 3.51
360 361 5.084818 TCGCATCCGACATAATTATCCAT 57.915 39.130 0.00 0.00 38.82 3.41
361 362 4.529109 TCGCATCCGACATAATTATCCA 57.471 40.909 0.00 0.00 38.82 3.41
374 375 2.438868 TACATGAGGAATCGCATCCG 57.561 50.000 0.00 0.00 44.60 4.18
375 376 5.482908 ACTATTACATGAGGAATCGCATCC 58.517 41.667 0.00 0.00 39.96 3.51
376 377 8.709386 ATAACTATTACATGAGGAATCGCATC 57.291 34.615 0.00 0.00 31.00 3.91
378 379 9.419297 GTTATAACTATTACATGAGGAATCGCA 57.581 33.333 8.41 0.00 0.00 5.10
379 380 9.419297 TGTTATAACTATTACATGAGGAATCGC 57.581 33.333 16.33 0.00 0.00 4.58
393 394 9.209048 TCTGTGTCACCCTATGTTATAACTATT 57.791 33.333 16.33 4.69 0.00 1.73
394 395 8.777578 TCTGTGTCACCCTATGTTATAACTAT 57.222 34.615 16.33 10.46 0.00 2.12
395 396 8.472413 GTTCTGTGTCACCCTATGTTATAACTA 58.528 37.037 16.33 4.00 0.00 2.24
396 397 7.180408 AGTTCTGTGTCACCCTATGTTATAACT 59.820 37.037 16.33 5.22 0.00 2.24
397 398 7.328737 AGTTCTGTGTCACCCTATGTTATAAC 58.671 38.462 8.75 8.75 0.00 1.89
398 399 7.490657 AGTTCTGTGTCACCCTATGTTATAA 57.509 36.000 0.00 0.00 0.00 0.98
399 400 7.201884 GCTAGTTCTGTGTCACCCTATGTTATA 60.202 40.741 0.00 0.00 0.00 0.98
400 401 6.407074 GCTAGTTCTGTGTCACCCTATGTTAT 60.407 42.308 0.00 0.00 0.00 1.89
401 402 5.105473 GCTAGTTCTGTGTCACCCTATGTTA 60.105 44.000 0.00 0.00 0.00 2.41
402 403 4.322801 GCTAGTTCTGTGTCACCCTATGTT 60.323 45.833 0.00 0.00 0.00 2.71
403 404 3.195825 GCTAGTTCTGTGTCACCCTATGT 59.804 47.826 0.00 0.00 0.00 2.29
404 405 3.449018 AGCTAGTTCTGTGTCACCCTATG 59.551 47.826 0.00 0.00 0.00 2.23
405 406 3.714144 AGCTAGTTCTGTGTCACCCTAT 58.286 45.455 0.00 0.00 0.00 2.57
406 407 3.170991 AGCTAGTTCTGTGTCACCCTA 57.829 47.619 0.00 0.00 0.00 3.53
407 408 2.016905 AGCTAGTTCTGTGTCACCCT 57.983 50.000 0.00 0.00 0.00 4.34
408 409 2.037251 TGAAGCTAGTTCTGTGTCACCC 59.963 50.000 0.00 0.00 35.99 4.61
409 410 3.243907 ACTGAAGCTAGTTCTGTGTCACC 60.244 47.826 13.03 0.00 43.58 4.02
410 411 3.983741 ACTGAAGCTAGTTCTGTGTCAC 58.016 45.455 13.03 0.00 43.58 3.67
411 412 4.672587 AACTGAAGCTAGTTCTGTGTCA 57.327 40.909 13.92 0.00 44.24 3.58
419 420 8.671921 CATTACATTGATGAACTGAAGCTAGTT 58.328 33.333 1.40 1.40 43.24 2.24
420 421 7.826252 ACATTACATTGATGAACTGAAGCTAGT 59.174 33.333 0.00 0.00 0.00 2.57
421 422 8.206325 ACATTACATTGATGAACTGAAGCTAG 57.794 34.615 0.00 0.00 0.00 3.42
422 423 9.317936 CTACATTACATTGATGAACTGAAGCTA 57.682 33.333 0.00 0.00 0.00 3.32
423 424 7.281774 CCTACATTACATTGATGAACTGAAGCT 59.718 37.037 0.00 0.00 0.00 3.74
424 425 7.412853 CCTACATTACATTGATGAACTGAAGC 58.587 38.462 0.00 0.00 0.00 3.86
425 426 7.066163 TGCCTACATTACATTGATGAACTGAAG 59.934 37.037 0.00 0.00 0.00 3.02
426 427 6.883756 TGCCTACATTACATTGATGAACTGAA 59.116 34.615 0.00 0.00 0.00 3.02
427 428 6.413892 TGCCTACATTACATTGATGAACTGA 58.586 36.000 0.00 0.00 0.00 3.41
428 429 6.682423 TGCCTACATTACATTGATGAACTG 57.318 37.500 0.00 0.00 0.00 3.16
429 430 6.830324 ACATGCCTACATTACATTGATGAACT 59.170 34.615 0.00 0.00 32.87 3.01
430 431 7.031226 ACATGCCTACATTACATTGATGAAC 57.969 36.000 0.00 0.00 32.87 3.18
431 432 7.041167 GCTACATGCCTACATTACATTGATGAA 60.041 37.037 0.00 0.00 32.87 2.57
432 433 6.427853 GCTACATGCCTACATTACATTGATGA 59.572 38.462 0.00 0.00 32.87 2.92
433 434 6.429078 AGCTACATGCCTACATTACATTGATG 59.571 38.462 0.00 0.00 44.23 3.07
434 435 6.537355 AGCTACATGCCTACATTACATTGAT 58.463 36.000 0.00 0.00 44.23 2.57
435 436 5.928976 AGCTACATGCCTACATTACATTGA 58.071 37.500 0.00 0.00 44.23 2.57
436 437 6.624352 AAGCTACATGCCTACATTACATTG 57.376 37.500 0.00 0.00 44.23 2.82
437 438 7.993183 ACTAAAGCTACATGCCTACATTACATT 59.007 33.333 0.00 0.00 44.23 2.71
438 439 7.509546 ACTAAAGCTACATGCCTACATTACAT 58.490 34.615 0.00 0.00 44.23 2.29
439 440 6.884832 ACTAAAGCTACATGCCTACATTACA 58.115 36.000 0.00 0.00 44.23 2.41
440 441 7.494625 TCAACTAAAGCTACATGCCTACATTAC 59.505 37.037 0.00 0.00 44.23 1.89
441 442 7.561251 TCAACTAAAGCTACATGCCTACATTA 58.439 34.615 0.00 0.00 44.23 1.90
442 443 6.414732 TCAACTAAAGCTACATGCCTACATT 58.585 36.000 0.00 0.00 44.23 2.71
443 444 5.989477 TCAACTAAAGCTACATGCCTACAT 58.011 37.500 0.00 0.00 44.23 2.29
444 445 5.414789 TCAACTAAAGCTACATGCCTACA 57.585 39.130 0.00 0.00 44.23 2.74
445 446 6.316390 ACATTCAACTAAAGCTACATGCCTAC 59.684 38.462 0.00 0.00 44.23 3.18
446 447 6.414732 ACATTCAACTAAAGCTACATGCCTA 58.585 36.000 0.00 0.00 44.23 3.93
447 448 5.256474 ACATTCAACTAAAGCTACATGCCT 58.744 37.500 0.00 0.00 44.23 4.75
448 449 5.567138 ACATTCAACTAAAGCTACATGCC 57.433 39.130 0.00 0.00 44.23 4.40
449 450 7.308782 ACTACATTCAACTAAAGCTACATGC 57.691 36.000 0.00 0.00 43.29 4.06
450 451 7.693951 GCAACTACATTCAACTAAAGCTACATG 59.306 37.037 0.00 0.00 0.00 3.21
451 452 7.148239 GGCAACTACATTCAACTAAAGCTACAT 60.148 37.037 0.00 0.00 0.00 2.29
452 453 6.148811 GGCAACTACATTCAACTAAAGCTACA 59.851 38.462 0.00 0.00 0.00 2.74
453 454 6.543736 GGCAACTACATTCAACTAAAGCTAC 58.456 40.000 0.00 0.00 0.00 3.58
467 468 0.102481 CTAGGCGACGGCAACTACAT 59.898 55.000 24.23 3.12 42.47 2.29
468 469 1.246056 ACTAGGCGACGGCAACTACA 61.246 55.000 24.23 0.35 42.47 2.74
659 663 5.648247 ACTAACTAGAACAGGGGTTAGTGA 58.352 41.667 14.00 0.00 46.75 3.41
776 784 3.252215 TGAATACTTTCCGTGCTGTTTGG 59.748 43.478 0.00 0.00 0.00 3.28
844 853 5.670792 TCCTCAAAAACTAATCCTCGCTA 57.329 39.130 0.00 0.00 0.00 4.26
853 862 6.886178 ACTAGGCCTATCCTCAAAAACTAA 57.114 37.500 14.30 0.00 43.20 2.24
990 999 1.973138 CGAAGCTCATGCCAAAACAG 58.027 50.000 0.00 0.00 40.80 3.16
1281 1299 4.424566 GCGGGCACTTGCACATGG 62.425 66.667 3.99 0.00 46.93 3.66
1297 1315 2.995939 TGTCATCGAACTCATCTTGTGC 59.004 45.455 0.00 0.00 0.00 4.57
1418 1436 7.453752 TCCTTACTTCTTCCACTAGCTCTTTTA 59.546 37.037 0.00 0.00 0.00 1.52
1506 1525 5.359756 TCACATGTATCAAGGGAAATCTCG 58.640 41.667 0.00 0.00 0.00 4.04
1577 1596 5.307976 TCTTCAATCTGAGGTCTTTCTTCCA 59.692 40.000 0.00 0.00 0.00 3.53
2221 2240 2.685366 CCATGCCATGGGTCCACT 59.315 61.111 16.33 0.00 46.86 4.00
2372 2398 2.494059 AGGGTCATGAAACAACTCACG 58.506 47.619 0.00 0.00 0.00 4.35
2378 2404 7.556275 GGTATTCAGATTAGGGTCATGAAACAA 59.444 37.037 0.00 0.00 33.91 2.83
3026 3075 3.053917 AGAAAATGGTATACACCCGGCTT 60.054 43.478 5.01 0.00 45.11 4.35
3044 3093 2.574369 ACATACCACCGATCCCAAGAAA 59.426 45.455 0.00 0.00 0.00 2.52
3049 3098 0.834612 GGAACATACCACCGATCCCA 59.165 55.000 0.00 0.00 0.00 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.