Multiple sequence alignment - TraesCS5B01G171900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G171900 chr5B 100.000 3162 0 0 491 3652 316377874 316381035 0.000000e+00 5840.0
1 TraesCS5B01G171900 chr5B 94.972 179 4 4 1460 1633 316378754 316378932 3.590000e-70 276.0
2 TraesCS5B01G171900 chr5B 94.972 179 4 4 1371 1549 316378843 316379016 3.590000e-70 276.0
3 TraesCS5B01G171900 chr5B 90.217 92 4 4 1547 1633 316378754 316378845 8.290000e-22 115.0
4 TraesCS5B01G171900 chr5B 90.217 92 4 4 1371 1462 316378930 316379016 8.290000e-22 115.0
5 TraesCS5B01G171900 chr5B 100.000 50 0 0 1 50 316377384 316377433 3.880000e-15 93.5
6 TraesCS5B01G171900 chr5A 90.427 2110 145 29 1566 3652 370191671 370189596 0.000000e+00 2724.0
7 TraesCS5B01G171900 chr5A 88.553 760 28 21 497 1236 370192703 370191983 0.000000e+00 867.0
8 TraesCS5B01G171900 chr5D 93.886 1701 94 4 1961 3652 278311601 278313300 0.000000e+00 2556.0
9 TraesCS5B01G171900 chr5D 89.199 787 27 20 491 1267 278310096 278310834 0.000000e+00 929.0
10 TraesCS5B01G171900 chr5D 85.593 236 20 8 1683 1917 278311376 278311598 6.100000e-58 235.0
11 TraesCS5B01G171900 chr5D 87.963 108 12 1 1585 1691 278311109 278311216 3.830000e-25 126.0
12 TraesCS5B01G171900 chr1B 85.854 205 28 1 1030 1234 242248735 242248532 2.210000e-52 217.0
13 TraesCS5B01G171900 chr1A 85.854 205 28 1 1030 1234 175178822 175178619 2.210000e-52 217.0
14 TraesCS5B01G171900 chr1D 85.366 205 29 1 1030 1234 184470882 184471085 1.030000e-50 211.0
15 TraesCS5B01G171900 chr4D 93.478 46 2 1 1052 1097 476865642 476865686 2.350000e-07 67.6
16 TraesCS5B01G171900 chr4D 92.500 40 3 0 668 707 503353948 503353987 1.420000e-04 58.4
17 TraesCS5B01G171900 chr4B 93.478 46 2 1 1052 1097 600917296 600917340 2.350000e-07 67.6
18 TraesCS5B01G171900 chr4A 93.478 46 2 1 1052 1097 683606227 683606271 2.350000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G171900 chr5B 316377384 316381035 3651 False 1119.25 5840 95.06300 1 3652 6 chr5B.!!$F1 3651
1 TraesCS5B01G171900 chr5A 370189596 370192703 3107 True 1795.50 2724 89.49000 497 3652 2 chr5A.!!$R1 3155
2 TraesCS5B01G171900 chr5D 278310096 278313300 3204 False 961.50 2556 89.16025 491 3652 4 chr5D.!!$F1 3161

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.250467 GCACAGGAGAGAAGGCAACA 60.250 55.0 0.0 0.0 41.41 3.33 F
1271 1304 0.109153 AACCCTAAACCCACCGTCAC 59.891 55.0 0.0 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1654 1883 0.249155 TTCGGTTGAGGACACGTCAC 60.249 55.0 0.00 0.0 0.00 3.67 R
2928 3349 0.039074 GACAGATATACGCGGCAGCT 60.039 55.0 12.47 0.0 42.32 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.971183 TTTTTACCAAAAAGAAAAGCACTGT 57.029 28.000 0.00 0.00 36.02 3.55
25 26 7.971183 TTTTACCAAAAAGAAAAGCACTGTT 57.029 28.000 0.00 0.00 31.04 3.16
26 27 7.971183 TTTACCAAAAAGAAAAGCACTGTTT 57.029 28.000 0.00 0.00 0.00 2.83
27 28 5.861222 ACCAAAAAGAAAAGCACTGTTTG 57.139 34.783 0.00 0.00 40.32 2.93
28 29 5.304778 ACCAAAAAGAAAAGCACTGTTTGT 58.695 33.333 0.00 0.00 39.52 2.83
30 31 5.390779 CCAAAAAGAAAAGCACTGTTTGTGG 60.391 40.000 0.00 6.29 46.27 4.17
31 32 2.584492 AGAAAAGCACTGTTTGTGGC 57.416 45.000 0.00 0.00 46.27 5.01
32 33 1.824230 AGAAAAGCACTGTTTGTGGCA 59.176 42.857 0.00 0.00 46.27 4.92
33 34 1.926510 GAAAAGCACTGTTTGTGGCAC 59.073 47.619 11.55 11.55 46.27 5.01
34 35 0.894141 AAAGCACTGTTTGTGGCACA 59.106 45.000 17.96 17.96 46.27 4.57
35 36 0.457035 AAGCACTGTTTGTGGCACAG 59.543 50.000 20.97 11.62 46.27 3.66
36 37 1.066257 GCACTGTTTGTGGCACAGG 59.934 57.895 20.97 14.01 45.20 4.00
37 38 1.383456 GCACTGTTTGTGGCACAGGA 61.383 55.000 20.97 10.91 45.20 3.86
38 39 0.664761 CACTGTTTGTGGCACAGGAG 59.335 55.000 20.97 18.32 45.20 3.69
39 40 0.546122 ACTGTTTGTGGCACAGGAGA 59.454 50.000 20.97 11.07 45.20 3.71
40 41 1.233019 CTGTTTGTGGCACAGGAGAG 58.767 55.000 20.97 16.36 41.80 3.20
41 42 0.836606 TGTTTGTGGCACAGGAGAGA 59.163 50.000 20.97 1.34 41.80 3.10
42 43 1.211703 TGTTTGTGGCACAGGAGAGAA 59.788 47.619 20.97 8.26 41.80 2.87
43 44 1.876156 GTTTGTGGCACAGGAGAGAAG 59.124 52.381 20.97 0.00 41.80 2.85
44 45 0.397941 TTGTGGCACAGGAGAGAAGG 59.602 55.000 20.97 0.00 41.80 3.46
45 46 1.376553 GTGGCACAGGAGAGAAGGC 60.377 63.158 13.86 0.00 41.80 4.35
46 47 1.842920 TGGCACAGGAGAGAAGGCA 60.843 57.895 0.00 0.00 0.00 4.75
47 48 1.376466 GGCACAGGAGAGAAGGCAA 59.624 57.895 0.00 0.00 0.00 4.52
48 49 0.957888 GGCACAGGAGAGAAGGCAAC 60.958 60.000 0.00 0.00 0.00 4.17
49 50 0.250467 GCACAGGAGAGAAGGCAACA 60.250 55.000 0.00 0.00 41.41 3.33
511 515 2.081462 ACAGCACCGGTACATTTTAGC 58.919 47.619 6.87 3.46 0.00 3.09
585 589 3.193903 TGATTTTCCACCTCATGTGCATG 59.806 43.478 5.86 5.86 44.01 4.06
639 646 3.245407 ACTGCTGCTCCTCCCTAATTTTT 60.245 43.478 0.00 0.00 0.00 1.94
662 669 8.897872 TTTTAACACTAAACAAACCAAACCAA 57.102 26.923 0.00 0.00 0.00 3.67
663 670 8.897872 TTTAACACTAAACAAACCAAACCAAA 57.102 26.923 0.00 0.00 0.00 3.28
664 671 6.788684 AACACTAAACAAACCAAACCAAAC 57.211 33.333 0.00 0.00 0.00 2.93
665 672 5.239351 ACACTAAACAAACCAAACCAAACC 58.761 37.500 0.00 0.00 0.00 3.27
666 673 5.221661 ACACTAAACAAACCAAACCAAACCA 60.222 36.000 0.00 0.00 0.00 3.67
707 721 1.304282 GCCACCACCACCATCATCT 59.696 57.895 0.00 0.00 0.00 2.90
761 781 1.464722 CCAAATCCCACCCACCACT 59.535 57.895 0.00 0.00 0.00 4.00
857 883 1.275291 CGGTTTCAGTAGCCAGGAAGA 59.725 52.381 0.00 0.00 0.00 2.87
860 886 3.339141 GTTTCAGTAGCCAGGAAGAAGG 58.661 50.000 0.00 0.00 0.00 3.46
862 888 2.461695 TCAGTAGCCAGGAAGAAGGAG 58.538 52.381 0.00 0.00 0.00 3.69
863 889 2.043115 TCAGTAGCCAGGAAGAAGGAGA 59.957 50.000 0.00 0.00 0.00 3.71
864 890 2.834549 CAGTAGCCAGGAAGAAGGAGAA 59.165 50.000 0.00 0.00 0.00 2.87
865 891 3.261897 CAGTAGCCAGGAAGAAGGAGAAA 59.738 47.826 0.00 0.00 0.00 2.52
868 894 1.340502 GCCAGGAAGAAGGAGAAAGGG 60.341 57.143 0.00 0.00 0.00 3.95
869 895 1.283321 CCAGGAAGAAGGAGAAAGGGG 59.717 57.143 0.00 0.00 0.00 4.79
870 896 2.269940 CAGGAAGAAGGAGAAAGGGGA 58.730 52.381 0.00 0.00 0.00 4.81
871 897 2.026729 CAGGAAGAAGGAGAAAGGGGAC 60.027 54.545 0.00 0.00 0.00 4.46
872 898 1.066071 GGAAGAAGGAGAAAGGGGACG 60.066 57.143 0.00 0.00 0.00 4.79
874 900 0.910088 AGAAGGAGAAAGGGGACGGG 60.910 60.000 0.00 0.00 0.00 5.28
875 901 0.908180 GAAGGAGAAAGGGGACGGGA 60.908 60.000 0.00 0.00 0.00 5.14
876 902 1.199425 AAGGAGAAAGGGGACGGGAC 61.199 60.000 0.00 0.00 0.00 4.46
901 927 4.735132 CCTTCCGCCGCGTCTTGA 62.735 66.667 12.58 0.00 0.00 3.02
902 928 3.479269 CTTCCGCCGCGTCTTGAC 61.479 66.667 12.58 0.00 0.00 3.18
939 965 1.611851 AGGAGGTCCTGCTGGTCTG 60.612 63.158 12.91 0.00 46.55 3.51
976 1002 2.311463 CAGGGAGATTAAGAGCCGAGA 58.689 52.381 0.00 0.00 0.00 4.04
979 1005 2.556622 GGGAGATTAAGAGCCGAGAGAG 59.443 54.545 0.00 0.00 0.00 3.20
980 1006 3.482436 GGAGATTAAGAGCCGAGAGAGA 58.518 50.000 0.00 0.00 0.00 3.10
981 1007 3.502211 GGAGATTAAGAGCCGAGAGAGAG 59.498 52.174 0.00 0.00 0.00 3.20
982 1008 4.385825 GAGATTAAGAGCCGAGAGAGAGA 58.614 47.826 0.00 0.00 0.00 3.10
990 1016 1.412710 GCCGAGAGAGAGAGAGAGAGA 59.587 57.143 0.00 0.00 0.00 3.10
1236 1262 2.187163 GCGGGGCAAGAGAGGTAC 59.813 66.667 0.00 0.00 0.00 3.34
1237 1263 2.494918 CGGGGCAAGAGAGGTACG 59.505 66.667 0.00 0.00 0.00 3.67
1247 1280 4.799428 GCAAGAGAGGTACGTAAATCACTC 59.201 45.833 0.00 4.26 0.00 3.51
1257 1290 4.906618 ACGTAAATCACTCATCAAACCCT 58.093 39.130 0.00 0.00 0.00 4.34
1267 1300 1.816224 CATCAAACCCTAAACCCACCG 59.184 52.381 0.00 0.00 0.00 4.94
1269 1302 1.202794 TCAAACCCTAAACCCACCGTC 60.203 52.381 0.00 0.00 0.00 4.79
1270 1303 0.845337 AAACCCTAAACCCACCGTCA 59.155 50.000 0.00 0.00 0.00 4.35
1271 1304 0.109153 AACCCTAAACCCACCGTCAC 59.891 55.000 0.00 0.00 0.00 3.67
1289 1344 0.804933 ACGGCCTCGAGCGTTTTATC 60.805 55.000 6.99 0.00 45.17 1.75
1307 1458 9.959775 CGTTTTATCTTATCTTCTTGTCTGTTC 57.040 33.333 0.00 0.00 0.00 3.18
1309 1460 9.449719 TTTTATCTTATCTTCTTGTCTGTTCCC 57.550 33.333 0.00 0.00 0.00 3.97
1310 1461 6.882768 ATCTTATCTTCTTGTCTGTTCCCT 57.117 37.500 0.00 0.00 0.00 4.20
1311 1462 7.979786 ATCTTATCTTCTTGTCTGTTCCCTA 57.020 36.000 0.00 0.00 0.00 3.53
1312 1463 7.411486 TCTTATCTTCTTGTCTGTTCCCTAG 57.589 40.000 0.00 0.00 0.00 3.02
1313 1464 6.954684 TCTTATCTTCTTGTCTGTTCCCTAGT 59.045 38.462 0.00 0.00 0.00 2.57
1315 1466 8.660295 TTATCTTCTTGTCTGTTCCCTAGTTA 57.340 34.615 0.00 0.00 0.00 2.24
1316 1467 7.741554 ATCTTCTTGTCTGTTCCCTAGTTAT 57.258 36.000 0.00 0.00 0.00 1.89
1317 1468 6.936279 TCTTCTTGTCTGTTCCCTAGTTATG 58.064 40.000 0.00 0.00 0.00 1.90
1318 1469 5.677319 TCTTGTCTGTTCCCTAGTTATGG 57.323 43.478 0.00 0.00 0.00 2.74
1333 1486 9.224267 CCCTAGTTATGGTTATGAATGAATGAG 57.776 37.037 0.00 0.00 0.00 2.90
1341 1569 6.321945 TGGTTATGAATGAATGAGGATTGGTG 59.678 38.462 0.00 0.00 0.00 4.17
1346 1574 3.354948 TGAATGAGGATTGGTGAGTGG 57.645 47.619 0.00 0.00 0.00 4.00
1360 1588 4.474651 TGGTGAGTGGAATAGTGATGGATT 59.525 41.667 0.00 0.00 0.00 3.01
1361 1589 4.818546 GGTGAGTGGAATAGTGATGGATTG 59.181 45.833 0.00 0.00 0.00 2.67
1362 1590 4.818546 GTGAGTGGAATAGTGATGGATTGG 59.181 45.833 0.00 0.00 0.00 3.16
1363 1591 4.721274 TGAGTGGAATAGTGATGGATTGGA 59.279 41.667 0.00 0.00 0.00 3.53
1364 1592 5.370584 TGAGTGGAATAGTGATGGATTGGAT 59.629 40.000 0.00 0.00 0.00 3.41
1380 1608 2.158559 TGGATTTGTCATTGTCCGTGG 58.841 47.619 0.00 0.00 33.39 4.94
1381 1609 2.224646 TGGATTTGTCATTGTCCGTGGA 60.225 45.455 0.00 0.00 33.39 4.02
1382 1610 2.420022 GGATTTGTCATTGTCCGTGGAG 59.580 50.000 0.00 0.00 0.00 3.86
1383 1611 2.920724 TTTGTCATTGTCCGTGGAGA 57.079 45.000 0.00 0.00 0.00 3.71
1384 1612 2.920724 TTGTCATTGTCCGTGGAGAA 57.079 45.000 0.51 0.51 0.00 2.87
1387 1615 3.073678 TGTCATTGTCCGTGGAGAAATG 58.926 45.455 14.12 14.12 33.84 2.32
1389 1617 1.133025 CATTGTCCGTGGAGAAATGGC 59.867 52.381 2.30 0.00 31.23 4.40
1390 1618 0.608035 TTGTCCGTGGAGAAATGGCC 60.608 55.000 0.00 0.00 0.00 5.36
1392 1620 0.322546 GTCCGTGGAGAAATGGCCTT 60.323 55.000 3.32 0.00 0.00 4.35
1393 1621 1.065709 GTCCGTGGAGAAATGGCCTTA 60.066 52.381 3.32 0.00 0.00 2.69
1394 1622 1.843851 TCCGTGGAGAAATGGCCTTAT 59.156 47.619 3.32 0.00 0.00 1.73
1395 1623 2.241176 TCCGTGGAGAAATGGCCTTATT 59.759 45.455 3.32 0.00 0.00 1.40
1396 1624 3.456644 TCCGTGGAGAAATGGCCTTATTA 59.543 43.478 3.32 0.00 0.00 0.98
1397 1625 3.564225 CCGTGGAGAAATGGCCTTATTAC 59.436 47.826 3.32 0.00 0.00 1.89
1398 1626 4.451900 CGTGGAGAAATGGCCTTATTACT 58.548 43.478 3.32 0.00 0.00 2.24
1399 1627 4.881850 CGTGGAGAAATGGCCTTATTACTT 59.118 41.667 3.32 0.00 0.00 2.24
1400 1628 5.220854 CGTGGAGAAATGGCCTTATTACTTG 60.221 44.000 3.32 0.00 0.00 3.16
1401 1629 4.644685 TGGAGAAATGGCCTTATTACTTGC 59.355 41.667 3.32 0.00 0.00 4.01
1402 1630 4.889995 GGAGAAATGGCCTTATTACTTGCT 59.110 41.667 3.32 0.00 0.00 3.91
1403 1631 5.009110 GGAGAAATGGCCTTATTACTTGCTC 59.991 44.000 3.32 0.00 0.00 4.26
1404 1632 5.760131 AGAAATGGCCTTATTACTTGCTCT 58.240 37.500 3.32 0.00 0.00 4.09
1420 1648 4.476628 TGCTCTGTCTCTGCAATTATGA 57.523 40.909 0.00 0.00 33.48 2.15
1428 1656 7.012989 TCTGTCTCTGCAATTATGATGGAATTG 59.987 37.037 4.16 4.16 43.93 2.32
1429 1657 6.829811 TGTCTCTGCAATTATGATGGAATTGA 59.170 34.615 11.30 0.00 43.85 2.57
1430 1658 7.504574 TGTCTCTGCAATTATGATGGAATTGAT 59.495 33.333 11.30 0.00 43.85 2.57
1431 1659 9.006839 GTCTCTGCAATTATGATGGAATTGATA 57.993 33.333 11.30 0.61 43.85 2.15
1432 1660 9.006839 TCTCTGCAATTATGATGGAATTGATAC 57.993 33.333 11.30 0.00 43.85 2.24
1433 1661 8.694581 TCTGCAATTATGATGGAATTGATACA 57.305 30.769 11.30 1.16 43.85 2.29
1434 1662 8.570488 TCTGCAATTATGATGGAATTGATACAC 58.430 33.333 11.30 0.00 43.85 2.90
1435 1663 8.467963 TGCAATTATGATGGAATTGATACACT 57.532 30.769 11.30 0.00 43.85 3.55
1436 1664 8.354426 TGCAATTATGATGGAATTGATACACTG 58.646 33.333 11.30 0.00 43.85 3.66
1437 1665 8.355169 GCAATTATGATGGAATTGATACACTGT 58.645 33.333 11.30 0.00 43.85 3.55
1438 1666 9.888878 CAATTATGATGGAATTGATACACTGTC 57.111 33.333 2.62 0.00 43.85 3.51
1439 1667 9.857656 AATTATGATGGAATTGATACACTGTCT 57.142 29.630 0.00 0.00 0.00 3.41
1440 1668 8.667076 TTATGATGGAATTGATACACTGTCTG 57.333 34.615 0.00 0.00 0.00 3.51
1441 1669 4.877823 TGATGGAATTGATACACTGTCTGC 59.122 41.667 0.00 0.00 0.00 4.26
1442 1670 4.558226 TGGAATTGATACACTGTCTGCT 57.442 40.909 0.00 0.00 0.00 4.24
1443 1671 4.256110 TGGAATTGATACACTGTCTGCTG 58.744 43.478 0.00 0.00 0.00 4.41
1444 1672 3.064545 GGAATTGATACACTGTCTGCTGC 59.935 47.826 0.00 0.00 0.00 5.25
1445 1673 3.623906 ATTGATACACTGTCTGCTGCT 57.376 42.857 0.00 0.00 0.00 4.24
1446 1674 3.407424 TTGATACACTGTCTGCTGCTT 57.593 42.857 0.00 0.00 0.00 3.91
1447 1675 2.964740 TGATACACTGTCTGCTGCTTC 58.035 47.619 0.00 0.00 0.00 3.86
1448 1676 2.299867 TGATACACTGTCTGCTGCTTCA 59.700 45.455 0.00 0.00 0.00 3.02
1449 1677 2.908688 TACACTGTCTGCTGCTTCAA 57.091 45.000 0.00 0.00 0.00 2.69
1450 1678 2.042686 ACACTGTCTGCTGCTTCAAA 57.957 45.000 0.00 0.00 0.00 2.69
1451 1679 2.368439 ACACTGTCTGCTGCTTCAAAA 58.632 42.857 0.00 0.00 0.00 2.44
1452 1680 2.357009 ACACTGTCTGCTGCTTCAAAAG 59.643 45.455 0.00 0.00 0.00 2.27
1453 1681 1.952296 ACTGTCTGCTGCTTCAAAAGG 59.048 47.619 0.00 0.00 0.00 3.11
1454 1682 2.224606 CTGTCTGCTGCTTCAAAAGGA 58.775 47.619 0.00 0.00 0.00 3.36
1455 1683 2.620115 CTGTCTGCTGCTTCAAAAGGAA 59.380 45.455 0.00 0.00 0.00 3.36
1456 1684 3.023119 TGTCTGCTGCTTCAAAAGGAAA 58.977 40.909 0.00 0.00 34.44 3.13
1457 1685 3.638160 TGTCTGCTGCTTCAAAAGGAAAT 59.362 39.130 0.00 0.00 34.44 2.17
1458 1686 4.099881 TGTCTGCTGCTTCAAAAGGAAATT 59.900 37.500 0.00 0.00 34.44 1.82
1459 1687 5.301551 TGTCTGCTGCTTCAAAAGGAAATTA 59.698 36.000 0.00 0.00 34.44 1.40
1460 1688 6.015180 TGTCTGCTGCTTCAAAAGGAAATTAT 60.015 34.615 0.00 0.00 34.44 1.28
1461 1689 6.870439 GTCTGCTGCTTCAAAAGGAAATTATT 59.130 34.615 0.00 0.00 34.44 1.40
1462 1690 6.869913 TCTGCTGCTTCAAAAGGAAATTATTG 59.130 34.615 0.00 0.00 34.44 1.90
1463 1691 6.523840 TGCTGCTTCAAAAGGAAATTATTGT 58.476 32.000 0.00 0.00 34.44 2.71
1464 1692 6.646240 TGCTGCTTCAAAAGGAAATTATTGTC 59.354 34.615 0.00 0.00 34.44 3.18
1465 1693 6.870439 GCTGCTTCAAAAGGAAATTATTGTCT 59.130 34.615 0.00 0.00 34.44 3.41
1466 1694 7.148689 GCTGCTTCAAAAGGAAATTATTGTCTG 60.149 37.037 0.00 0.00 34.44 3.51
1467 1695 7.725251 TGCTTCAAAAGGAAATTATTGTCTGT 58.275 30.769 0.00 0.00 34.44 3.41
1468 1696 7.652909 TGCTTCAAAAGGAAATTATTGTCTGTG 59.347 33.333 0.00 0.00 34.44 3.66
1469 1697 7.116805 GCTTCAAAAGGAAATTATTGTCTGTGG 59.883 37.037 0.00 0.00 34.44 4.17
1470 1698 7.831691 TCAAAAGGAAATTATTGTCTGTGGA 57.168 32.000 0.00 0.00 0.00 4.02
1471 1699 7.885297 TCAAAAGGAAATTATTGTCTGTGGAG 58.115 34.615 0.00 0.00 0.00 3.86
1472 1700 7.723616 TCAAAAGGAAATTATTGTCTGTGGAGA 59.276 33.333 0.00 0.00 0.00 3.71
1473 1701 8.359642 CAAAAGGAAATTATTGTCTGTGGAGAA 58.640 33.333 0.00 0.00 0.00 2.87
1474 1702 8.477419 AAAGGAAATTATTGTCTGTGGAGAAA 57.523 30.769 0.00 0.00 0.00 2.52
1475 1703 8.655935 AAGGAAATTATTGTCTGTGGAGAAAT 57.344 30.769 0.00 0.00 0.00 2.17
1476 1704 8.059798 AGGAAATTATTGTCTGTGGAGAAATG 57.940 34.615 0.00 0.00 0.00 2.32
1477 1705 7.123247 AGGAAATTATTGTCTGTGGAGAAATGG 59.877 37.037 0.00 0.00 0.00 3.16
1478 1706 5.841957 ATTATTGTCTGTGGAGAAATGGC 57.158 39.130 0.00 0.00 0.00 4.40
1479 1707 1.909700 TTGTCTGTGGAGAAATGGCC 58.090 50.000 0.00 0.00 0.00 5.36
1480 1708 1.067295 TGTCTGTGGAGAAATGGCCT 58.933 50.000 3.32 0.00 0.00 5.19
1481 1709 1.425066 TGTCTGTGGAGAAATGGCCTT 59.575 47.619 3.32 0.00 0.00 4.35
1482 1710 2.642311 TGTCTGTGGAGAAATGGCCTTA 59.358 45.455 3.32 0.00 0.00 2.69
1483 1711 3.266772 TGTCTGTGGAGAAATGGCCTTAT 59.733 43.478 3.32 0.00 0.00 1.73
1484 1712 4.263905 TGTCTGTGGAGAAATGGCCTTATT 60.264 41.667 3.32 0.00 0.00 1.40
1485 1713 4.096984 GTCTGTGGAGAAATGGCCTTATTG 59.903 45.833 3.32 0.00 0.00 1.90
1486 1714 4.019174 CTGTGGAGAAATGGCCTTATTGT 58.981 43.478 3.32 0.00 0.00 2.71
1487 1715 4.415596 TGTGGAGAAATGGCCTTATTGTT 58.584 39.130 3.32 0.00 0.00 2.83
1488 1716 4.220382 TGTGGAGAAATGGCCTTATTGTTG 59.780 41.667 3.32 0.00 0.00 3.33
1489 1717 3.195396 TGGAGAAATGGCCTTATTGTTGC 59.805 43.478 3.32 0.00 0.00 4.17
1490 1718 3.448660 GGAGAAATGGCCTTATTGTTGCT 59.551 43.478 3.32 0.00 0.00 3.91
1491 1719 4.440663 GGAGAAATGGCCTTATTGTTGCTC 60.441 45.833 3.32 2.96 0.00 4.26
1492 1720 4.347607 AGAAATGGCCTTATTGTTGCTCT 58.652 39.130 3.32 0.00 0.00 4.09
1493 1721 4.159135 AGAAATGGCCTTATTGTTGCTCTG 59.841 41.667 3.32 0.00 0.00 3.35
1494 1722 2.584835 TGGCCTTATTGTTGCTCTGT 57.415 45.000 3.32 0.00 0.00 3.41
1495 1723 2.436417 TGGCCTTATTGTTGCTCTGTC 58.564 47.619 3.32 0.00 0.00 3.51
1496 1724 2.224744 TGGCCTTATTGTTGCTCTGTCA 60.225 45.455 3.32 0.00 0.00 3.58
1497 1725 3.019564 GGCCTTATTGTTGCTCTGTCAT 58.980 45.455 0.00 0.00 0.00 3.06
1498 1726 3.181493 GGCCTTATTGTTGCTCTGTCATG 60.181 47.826 0.00 0.00 0.00 3.07
1499 1727 3.733077 GCCTTATTGTTGCTCTGTCATGC 60.733 47.826 0.00 0.00 0.00 4.06
1500 1728 3.441222 CCTTATTGTTGCTCTGTCATGCA 59.559 43.478 0.00 0.00 37.42 3.96
1501 1729 4.082625 CCTTATTGTTGCTCTGTCATGCAA 60.083 41.667 8.69 8.69 45.40 4.08
1509 1737 5.432885 TGCTCTGTCATGCAATTATGATG 57.567 39.130 0.00 0.00 39.13 3.07
1510 1738 4.277423 TGCTCTGTCATGCAATTATGATGG 59.723 41.667 0.00 0.00 39.13 3.51
1511 1739 4.517832 GCTCTGTCATGCAATTATGATGGA 59.482 41.667 0.00 0.00 39.13 3.41
1512 1740 5.009310 GCTCTGTCATGCAATTATGATGGAA 59.991 40.000 0.00 0.00 39.13 3.53
1513 1741 6.294564 GCTCTGTCATGCAATTATGATGGAAT 60.295 38.462 0.00 0.00 39.13 3.01
1514 1742 7.591421 TCTGTCATGCAATTATGATGGAATT 57.409 32.000 0.00 0.00 39.13 2.17
1515 1743 7.430441 TCTGTCATGCAATTATGATGGAATTG 58.570 34.615 0.00 4.16 43.93 2.32
1516 1744 7.285858 TCTGTCATGCAATTATGATGGAATTGA 59.714 33.333 11.30 0.00 43.85 2.57
1517 1745 7.958088 TGTCATGCAATTATGATGGAATTGAT 58.042 30.769 11.30 1.51 43.85 2.57
1518 1746 9.080097 TGTCATGCAATTATGATGGAATTGATA 57.920 29.630 11.30 1.53 43.85 2.15
1519 1747 9.350357 GTCATGCAATTATGATGGAATTGATAC 57.650 33.333 11.30 1.47 43.85 2.24
1520 1748 9.080097 TCATGCAATTATGATGGAATTGATACA 57.920 29.630 11.30 2.09 43.85 2.29
1521 1749 9.135843 CATGCAATTATGATGGAATTGATACAC 57.864 33.333 11.30 0.00 43.85 2.90
1522 1750 8.467963 TGCAATTATGATGGAATTGATACACT 57.532 30.769 11.30 0.00 43.85 3.55
1523 1751 8.354426 TGCAATTATGATGGAATTGATACACTG 58.646 33.333 11.30 0.00 43.85 3.66
1524 1752 8.355169 GCAATTATGATGGAATTGATACACTGT 58.645 33.333 11.30 0.00 43.85 3.55
1525 1753 9.888878 CAATTATGATGGAATTGATACACTGTC 57.111 33.333 2.62 0.00 43.85 3.51
1526 1754 9.857656 AATTATGATGGAATTGATACACTGTCT 57.142 29.630 0.00 0.00 0.00 3.41
1527 1755 8.667076 TTATGATGGAATTGATACACTGTCTG 57.333 34.615 0.00 0.00 0.00 3.51
1528 1756 4.877823 TGATGGAATTGATACACTGTCTGC 59.122 41.667 0.00 0.00 0.00 4.26
1529 1757 4.558226 TGGAATTGATACACTGTCTGCT 57.442 40.909 0.00 0.00 0.00 4.24
1530 1758 4.256110 TGGAATTGATACACTGTCTGCTG 58.744 43.478 0.00 0.00 0.00 4.41
1531 1759 3.064545 GGAATTGATACACTGTCTGCTGC 59.935 47.826 0.00 0.00 0.00 5.25
1532 1760 3.623906 ATTGATACACTGTCTGCTGCT 57.376 42.857 0.00 0.00 0.00 4.24
1533 1761 3.407424 TTGATACACTGTCTGCTGCTT 57.593 42.857 0.00 0.00 0.00 3.91
1534 1762 2.964740 TGATACACTGTCTGCTGCTTC 58.035 47.619 0.00 0.00 0.00 3.86
1535 1763 2.299867 TGATACACTGTCTGCTGCTTCA 59.700 45.455 0.00 0.00 0.00 3.02
1536 1764 2.908688 TACACTGTCTGCTGCTTCAA 57.091 45.000 0.00 0.00 0.00 2.69
1537 1765 2.042686 ACACTGTCTGCTGCTTCAAA 57.957 45.000 0.00 0.00 0.00 2.69
1538 1766 2.368439 ACACTGTCTGCTGCTTCAAAA 58.632 42.857 0.00 0.00 0.00 2.44
1539 1767 2.357009 ACACTGTCTGCTGCTTCAAAAG 59.643 45.455 0.00 0.00 0.00 2.27
1540 1768 1.952296 ACTGTCTGCTGCTTCAAAAGG 59.048 47.619 0.00 0.00 0.00 3.11
1541 1769 2.224606 CTGTCTGCTGCTTCAAAAGGA 58.775 47.619 0.00 0.00 0.00 3.36
1542 1770 2.620115 CTGTCTGCTGCTTCAAAAGGAA 59.380 45.455 0.00 0.00 0.00 3.36
1543 1771 3.023119 TGTCTGCTGCTTCAAAAGGAAA 58.977 40.909 0.00 0.00 34.44 3.13
1544 1772 3.638160 TGTCTGCTGCTTCAAAAGGAAAT 59.362 39.130 0.00 0.00 34.44 2.17
1545 1773 4.099881 TGTCTGCTGCTTCAAAAGGAAATT 59.900 37.500 0.00 0.00 34.44 1.82
1546 1774 5.301551 TGTCTGCTGCTTCAAAAGGAAATTA 59.698 36.000 0.00 0.00 34.44 1.40
1547 1775 6.015180 TGTCTGCTGCTTCAAAAGGAAATTAT 60.015 34.615 0.00 0.00 34.44 1.28
1548 1776 6.870439 GTCTGCTGCTTCAAAAGGAAATTATT 59.130 34.615 0.00 0.00 34.44 1.40
1549 1777 6.869913 TCTGCTGCTTCAAAAGGAAATTATTG 59.130 34.615 0.00 0.00 34.44 1.90
1550 1778 6.523840 TGCTGCTTCAAAAGGAAATTATTGT 58.476 32.000 0.00 0.00 34.44 2.71
1551 1779 6.646240 TGCTGCTTCAAAAGGAAATTATTGTC 59.354 34.615 0.00 0.00 34.44 3.18
1552 1780 6.870439 GCTGCTTCAAAAGGAAATTATTGTCT 59.130 34.615 0.00 0.00 34.44 3.41
1553 1781 7.148689 GCTGCTTCAAAAGGAAATTATTGTCTG 60.149 37.037 0.00 0.00 34.44 3.51
1554 1782 7.725251 TGCTTCAAAAGGAAATTATTGTCTGT 58.275 30.769 0.00 0.00 34.44 3.41
1555 1783 7.652909 TGCTTCAAAAGGAAATTATTGTCTGTG 59.347 33.333 0.00 0.00 34.44 3.66
1556 1784 7.116805 GCTTCAAAAGGAAATTATTGTCTGTGG 59.883 37.037 0.00 0.00 34.44 4.17
1557 1785 7.831691 TCAAAAGGAAATTATTGTCTGTGGA 57.168 32.000 0.00 0.00 0.00 4.02
1558 1786 7.885297 TCAAAAGGAAATTATTGTCTGTGGAG 58.115 34.615 0.00 0.00 0.00 3.86
1559 1787 7.723616 TCAAAAGGAAATTATTGTCTGTGGAGA 59.276 33.333 0.00 0.00 0.00 3.71
1560 1788 8.359642 CAAAAGGAAATTATTGTCTGTGGAGAA 58.640 33.333 0.00 0.00 0.00 2.87
1561 1789 8.477419 AAAGGAAATTATTGTCTGTGGAGAAA 57.523 30.769 0.00 0.00 0.00 2.52
1562 1790 8.655935 AAGGAAATTATTGTCTGTGGAGAAAT 57.344 30.769 0.00 0.00 0.00 2.17
1563 1791 8.059798 AGGAAATTATTGTCTGTGGAGAAATG 57.940 34.615 0.00 0.00 0.00 2.32
1564 1792 7.123247 AGGAAATTATTGTCTGTGGAGAAATGG 59.877 37.037 0.00 0.00 0.00 3.16
1565 1793 5.841957 ATTATTGTCTGTGGAGAAATGGC 57.158 39.130 0.00 0.00 0.00 4.40
1566 1794 1.909700 TTGTCTGTGGAGAAATGGCC 58.090 50.000 0.00 0.00 0.00 5.36
1567 1795 1.067295 TGTCTGTGGAGAAATGGCCT 58.933 50.000 3.32 0.00 0.00 5.19
1568 1796 1.425066 TGTCTGTGGAGAAATGGCCTT 59.575 47.619 3.32 0.00 0.00 4.35
1569 1797 2.642311 TGTCTGTGGAGAAATGGCCTTA 59.358 45.455 3.32 0.00 0.00 2.69
1570 1798 3.266772 TGTCTGTGGAGAAATGGCCTTAT 59.733 43.478 3.32 0.00 0.00 1.73
1571 1799 4.263905 TGTCTGTGGAGAAATGGCCTTATT 60.264 41.667 3.32 0.00 0.00 1.40
1572 1800 4.096984 GTCTGTGGAGAAATGGCCTTATTG 59.903 45.833 3.32 0.00 0.00 1.90
1573 1801 4.019174 CTGTGGAGAAATGGCCTTATTGT 58.981 43.478 3.32 0.00 0.00 2.71
1574 1802 4.415596 TGTGGAGAAATGGCCTTATTGTT 58.584 39.130 3.32 0.00 0.00 2.83
1575 1803 4.220382 TGTGGAGAAATGGCCTTATTGTTG 59.780 41.667 3.32 0.00 0.00 3.33
1576 1804 3.195396 TGGAGAAATGGCCTTATTGTTGC 59.805 43.478 3.32 0.00 0.00 4.17
1577 1805 3.448660 GGAGAAATGGCCTTATTGTTGCT 59.551 43.478 3.32 0.00 0.00 3.91
1578 1806 4.440663 GGAGAAATGGCCTTATTGTTGCTC 60.441 45.833 3.32 2.96 0.00 4.26
1579 1807 4.347607 AGAAATGGCCTTATTGTTGCTCT 58.652 39.130 3.32 0.00 0.00 4.09
1580 1808 4.159135 AGAAATGGCCTTATTGTTGCTCTG 59.841 41.667 3.32 0.00 0.00 3.35
1581 1809 2.584835 TGGCCTTATTGTTGCTCTGT 57.415 45.000 3.32 0.00 0.00 3.41
1582 1810 2.436417 TGGCCTTATTGTTGCTCTGTC 58.564 47.619 3.32 0.00 0.00 3.51
1583 1811 2.224744 TGGCCTTATTGTTGCTCTGTCA 60.225 45.455 3.32 0.00 0.00 3.58
1584 1812 3.019564 GGCCTTATTGTTGCTCTGTCAT 58.980 45.455 0.00 0.00 0.00 3.06
1585 1813 3.181493 GGCCTTATTGTTGCTCTGTCATG 60.181 47.826 0.00 0.00 0.00 3.07
1586 1814 3.733077 GCCTTATTGTTGCTCTGTCATGC 60.733 47.826 0.00 0.00 0.00 4.06
1587 1815 3.441222 CCTTATTGTTGCTCTGTCATGCA 59.559 43.478 0.00 0.00 37.42 3.96
1588 1816 4.082625 CCTTATTGTTGCTCTGTCATGCAA 60.083 41.667 8.69 8.69 45.40 4.08
1596 1824 5.432885 TGCTCTGTCATGCAATTATGATG 57.567 39.130 0.00 0.00 39.13 3.07
1597 1825 4.277423 TGCTCTGTCATGCAATTATGATGG 59.723 41.667 0.00 0.00 39.13 3.51
1598 1826 4.517832 GCTCTGTCATGCAATTATGATGGA 59.482 41.667 0.00 0.00 39.13 3.41
1599 1827 5.009310 GCTCTGTCATGCAATTATGATGGAA 59.991 40.000 0.00 0.00 39.13 3.53
1600 1828 6.294564 GCTCTGTCATGCAATTATGATGGAAT 60.295 38.462 0.00 0.00 39.13 3.01
1601 1829 7.591421 TCTGTCATGCAATTATGATGGAATT 57.409 32.000 0.00 0.00 39.13 2.17
1602 1830 7.430441 TCTGTCATGCAATTATGATGGAATTG 58.570 34.615 0.00 4.16 43.93 2.32
1633 1861 9.528489 ACTGTCTGCTTTAAAAGGGAATTATTA 57.472 29.630 0.00 0.00 0.00 0.98
1646 1875 6.296803 AGGGAATTATTATTCGTTGTCTCCC 58.703 40.000 0.00 0.00 40.91 4.30
1654 1883 1.079543 CGTTGTCTCCCTGCTCTGG 60.080 63.158 0.00 0.00 0.00 3.86
1658 1887 1.188219 TGTCTCCCTGCTCTGGTGAC 61.188 60.000 12.16 12.16 43.42 3.67
1678 1907 2.289547 ACGTGTCCTCAACCGAAAATTG 59.710 45.455 0.00 0.00 0.00 2.32
1695 1924 9.619316 CCGAAAATTGTGTTTAGAATTGACATA 57.381 29.630 0.00 0.00 30.97 2.29
1717 2111 7.222805 ACATACTACAGATGTTAAGCATGTTCG 59.777 37.037 0.00 0.00 38.06 3.95
1783 2177 9.072375 TGTTTGTTTGACCATAATGTAAGATCA 57.928 29.630 0.00 0.00 0.00 2.92
1787 2181 7.277760 TGTTTGACCATAATGTAAGATCAGACG 59.722 37.037 0.00 0.00 0.00 4.18
1830 2224 5.066505 GCCTTACATTTTGACACCTATCAGG 59.933 44.000 0.00 0.00 42.49 3.86
1917 2311 4.205588 GCCGAAAAACTTTAACCAACTTCG 59.794 41.667 0.00 0.00 35.42 3.79
1919 2313 4.794246 CGAAAAACTTTAACCAACTTCGCA 59.206 37.500 0.00 0.00 0.00 5.10
1920 2314 5.052633 CGAAAAACTTTAACCAACTTCGCAG 60.053 40.000 0.00 0.00 0.00 5.18
1921 2315 3.349488 AACTTTAACCAACTTCGCAGC 57.651 42.857 0.00 0.00 0.00 5.25
1922 2316 2.294074 ACTTTAACCAACTTCGCAGCA 58.706 42.857 0.00 0.00 0.00 4.41
1923 2317 2.290641 ACTTTAACCAACTTCGCAGCAG 59.709 45.455 0.00 0.00 0.00 4.24
1924 2318 2.248280 TTAACCAACTTCGCAGCAGA 57.752 45.000 0.00 0.00 0.00 4.26
1925 2319 1.508632 TAACCAACTTCGCAGCAGAC 58.491 50.000 0.00 0.00 0.00 3.51
1926 2320 0.179045 AACCAACTTCGCAGCAGACT 60.179 50.000 0.00 0.00 0.00 3.24
1927 2321 0.179045 ACCAACTTCGCAGCAGACTT 60.179 50.000 0.00 0.00 0.00 3.01
1928 2322 0.947244 CCAACTTCGCAGCAGACTTT 59.053 50.000 0.00 0.00 0.00 2.66
1929 2323 2.143122 CCAACTTCGCAGCAGACTTTA 58.857 47.619 0.00 0.00 0.00 1.85
1930 2324 2.548057 CCAACTTCGCAGCAGACTTTAA 59.452 45.455 0.00 0.00 0.00 1.52
1931 2325 3.545633 CAACTTCGCAGCAGACTTTAAC 58.454 45.455 0.00 0.00 0.00 2.01
1932 2326 2.143925 ACTTCGCAGCAGACTTTAACC 58.856 47.619 0.00 0.00 0.00 2.85
1933 2327 2.143122 CTTCGCAGCAGACTTTAACCA 58.857 47.619 0.00 0.00 0.00 3.67
1934 2328 2.248280 TCGCAGCAGACTTTAACCAA 57.752 45.000 0.00 0.00 0.00 3.67
1939 2333 3.607078 GCAGCAGACTTTAACCAACTTCG 60.607 47.826 0.00 0.00 0.00 3.79
1943 2337 2.548480 AGACTTTAACCAACTTCGCAGC 59.452 45.455 0.00 0.00 0.00 5.25
1945 2339 2.290641 ACTTTAACCAACTTCGCAGCAG 59.709 45.455 0.00 0.00 0.00 4.24
1954 2348 2.285083 ACTTCGCAGCAGTAAAACACA 58.715 42.857 0.00 0.00 0.00 3.72
1959 2353 2.287915 CGCAGCAGTAAAACACAGAAGT 59.712 45.455 0.00 0.00 0.00 3.01
2038 2443 7.865706 ATAGTAATGTCTTTTGGCACCTAAG 57.134 36.000 0.00 0.00 36.59 2.18
2046 2451 7.455058 TGTCTTTTGGCACCTAAGAGTAATAA 58.545 34.615 6.23 0.00 0.00 1.40
2057 2464 9.088512 CACCTAAGAGTAATAACTAGCAGTTTG 57.911 37.037 6.82 0.00 39.51 2.93
2096 2504 7.539436 TGTTAATTTTGCAACTGAACTGTACA 58.461 30.769 0.00 0.00 0.00 2.90
2116 2524 5.217978 ACAGATTGGTGTTGCAAATGAAT 57.782 34.783 0.00 0.00 0.00 2.57
2169 2586 5.840715 TGCTTGCTTATTTGATTGTTCACA 58.159 33.333 0.00 0.00 0.00 3.58
2170 2587 5.921976 TGCTTGCTTATTTGATTGTTCACAG 59.078 36.000 0.00 0.00 0.00 3.66
2171 2588 5.164022 GCTTGCTTATTTGATTGTTCACAGC 60.164 40.000 0.00 0.00 0.00 4.40
2172 2589 5.450592 TGCTTATTTGATTGTTCACAGCA 57.549 34.783 0.00 0.00 32.54 4.41
2173 2590 5.221880 TGCTTATTTGATTGTTCACAGCAC 58.778 37.500 0.00 0.00 31.15 4.40
2306 2727 2.680974 ATCATATGGCGCGGTGGCTT 62.681 55.000 16.31 12.22 45.14 4.35
2376 2797 0.322546 GAACAAATCGGACCTGGGCT 60.323 55.000 0.00 0.00 0.00 5.19
2674 3095 0.529378 CCATCTTGTTTCTGGCAGGC 59.471 55.000 15.73 6.19 0.00 4.85
2692 3113 4.919754 GCAGGCAAAGTTTCTAAGTTGATG 59.080 41.667 0.00 0.00 0.00 3.07
2693 3114 4.919754 CAGGCAAAGTTTCTAAGTTGATGC 59.080 41.667 0.00 0.00 30.42 3.91
2699 3120 1.366111 TTCTAAGTTGATGCCGCGGC 61.366 55.000 42.35 42.35 42.35 6.53
2716 3137 1.361668 GGCATCGACACGCTGAATGT 61.362 55.000 0.00 0.00 0.00 2.71
2889 3310 2.378038 TGCTGGTTTTGCTGTTCTTCT 58.622 42.857 0.00 0.00 0.00 2.85
2928 3349 2.751259 ACATACTAGACCGAAAGCGTGA 59.249 45.455 0.00 0.00 35.23 4.35
2971 3392 3.172050 CGAACTACAGAACGACATGAGG 58.828 50.000 0.00 0.00 0.00 3.86
2977 3398 6.231211 ACTACAGAACGACATGAGGAAAATT 58.769 36.000 0.00 0.00 0.00 1.82
3078 3499 6.806739 AGCTTGTTTTGTTTTATATCCGCTTC 59.193 34.615 0.00 0.00 0.00 3.86
3165 3586 4.806330 AGTACTGTCAATGTTGGTACTCG 58.194 43.478 0.00 0.00 38.76 4.18
3301 3722 9.197694 CAACTACTTAGGTATTGCTATGATGAC 57.802 37.037 0.00 0.00 0.00 3.06
3303 3724 9.809395 ACTACTTAGGTATTGCTATGATGACTA 57.191 33.333 0.00 0.00 0.00 2.59
3347 3768 5.688807 CACTATGAGGATCCTTTGGTTGAT 58.311 41.667 17.42 2.71 0.00 2.57
3468 3889 3.426695 GCATTCGCTAAACATCAAGCACT 60.427 43.478 0.00 0.00 38.70 4.40
3486 3907 4.825400 GCACTTGAAAACAAATTCTGTGC 58.175 39.130 16.25 16.25 44.34 4.57
3516 3938 0.606130 TTTCTGCTTCGCCATGAGCA 60.606 50.000 6.64 6.64 44.04 4.26
3559 3981 2.037136 ATGGCAAGTGCGAGCTGTC 61.037 57.895 0.00 0.00 43.26 3.51
3570 3992 4.379243 AGCTGTCAACGAGCGGGG 62.379 66.667 0.00 0.00 41.61 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.971183 ACAGTGCTTTTCTTTTTGGTAAAAA 57.029 28.000 0.00 0.00 37.99 1.94
1 2 7.971183 AACAGTGCTTTTCTTTTTGGTAAAA 57.029 28.000 0.00 0.00 0.00 1.52
2 3 7.442666 ACAAACAGTGCTTTTCTTTTTGGTAAA 59.557 29.630 8.62 0.00 37.09 2.01
3 4 6.931840 ACAAACAGTGCTTTTCTTTTTGGTAA 59.068 30.769 8.62 0.00 37.09 2.85
4 5 6.367422 CACAAACAGTGCTTTTCTTTTTGGTA 59.633 34.615 8.62 0.00 42.15 3.25
5 6 5.179182 CACAAACAGTGCTTTTCTTTTTGGT 59.821 36.000 8.62 0.00 42.15 3.67
6 7 5.620467 CACAAACAGTGCTTTTCTTTTTGG 58.380 37.500 8.62 0.00 42.15 3.28
20 21 0.546122 TCTCCTGTGCCACAAACAGT 59.454 50.000 0.00 0.00 42.90 3.55
21 22 1.202687 TCTCTCCTGTGCCACAAACAG 60.203 52.381 0.00 0.00 43.84 3.16
22 23 0.836606 TCTCTCCTGTGCCACAAACA 59.163 50.000 0.00 0.00 0.00 2.83
23 24 1.876156 CTTCTCTCCTGTGCCACAAAC 59.124 52.381 0.00 0.00 0.00 2.93
24 25 1.202806 CCTTCTCTCCTGTGCCACAAA 60.203 52.381 0.00 0.00 0.00 2.83
25 26 0.397941 CCTTCTCTCCTGTGCCACAA 59.602 55.000 0.00 0.00 0.00 3.33
26 27 2.061220 CCTTCTCTCCTGTGCCACA 58.939 57.895 0.00 0.00 0.00 4.17
27 28 1.376553 GCCTTCTCTCCTGTGCCAC 60.377 63.158 0.00 0.00 0.00 5.01
28 29 1.418097 TTGCCTTCTCTCCTGTGCCA 61.418 55.000 0.00 0.00 0.00 4.92
29 30 0.957888 GTTGCCTTCTCTCCTGTGCC 60.958 60.000 0.00 0.00 0.00 5.01
30 31 0.250467 TGTTGCCTTCTCTCCTGTGC 60.250 55.000 0.00 0.00 0.00 4.57
585 589 1.803289 GATCAACAGGAAAGCGGGC 59.197 57.895 0.00 0.00 0.00 6.13
639 646 7.387122 GGTTTGGTTTGGTTTGTTTAGTGTTAA 59.613 33.333 0.00 0.00 0.00 2.01
662 669 4.022589 GGCGATGATGATGATGAATTGGTT 60.023 41.667 0.00 0.00 0.00 3.67
663 670 3.504906 GGCGATGATGATGATGAATTGGT 59.495 43.478 0.00 0.00 0.00 3.67
664 671 3.425758 CGGCGATGATGATGATGAATTGG 60.426 47.826 0.00 0.00 0.00 3.16
665 672 3.743886 CGGCGATGATGATGATGAATTG 58.256 45.455 0.00 0.00 0.00 2.32
666 673 2.161012 GCGGCGATGATGATGATGAATT 59.839 45.455 12.98 0.00 0.00 2.17
761 781 3.717294 GAAGGGCGAGGGGAGCAA 61.717 66.667 0.00 0.00 36.08 3.91
857 883 1.160145 TCCCGTCCCCTTTCTCCTT 59.840 57.895 0.00 0.00 0.00 3.36
860 886 2.577593 CGTCCCGTCCCCTTTCTC 59.422 66.667 0.00 0.00 0.00 2.87
862 888 2.307611 GATCCGTCCCGTCCCCTTTC 62.308 65.000 0.00 0.00 0.00 2.62
863 889 2.285144 ATCCGTCCCGTCCCCTTT 60.285 61.111 0.00 0.00 0.00 3.11
864 890 2.762875 GATCCGTCCCGTCCCCTT 60.763 66.667 0.00 0.00 0.00 3.95
884 910 4.735132 TCAAGACGCGGCGGAAGG 62.735 66.667 27.37 13.15 0.00 3.46
885 911 3.479269 GTCAAGACGCGGCGGAAG 61.479 66.667 27.37 13.12 0.00 3.46
907 933 4.880426 TCCTCCCAGGATCCCGGC 62.880 72.222 8.71 0.00 40.06 6.13
908 934 2.525381 CTCCTCCCAGGATCCCGG 60.525 72.222 8.55 7.77 44.81 5.73
909 935 2.525381 CCTCCTCCCAGGATCCCG 60.525 72.222 8.55 0.00 44.81 5.14
910 936 1.460497 GACCTCCTCCCAGGATCCC 60.460 68.421 8.55 0.00 44.81 3.85
911 937 1.460497 GGACCTCCTCCCAGGATCC 60.460 68.421 2.48 2.48 44.81 3.36
912 938 0.762461 CAGGACCTCCTCCCAGGATC 60.762 65.000 0.00 0.00 44.81 3.36
913 939 1.316266 CAGGACCTCCTCCCAGGAT 59.684 63.158 0.00 0.00 44.81 3.24
919 945 2.284995 ACCAGCAGGACCTCCTCC 60.285 66.667 0.35 0.00 46.65 4.30
926 952 0.321122 CAAGACCAGACCAGCAGGAC 60.321 60.000 0.35 0.00 38.69 3.85
939 965 0.954452 CTGCCTCAACAACCAAGACC 59.046 55.000 0.00 0.00 0.00 3.85
976 1002 2.412591 CCTCCCTCTCTCTCTCTCTCT 58.587 57.143 0.00 0.00 0.00 3.10
979 1005 1.421646 CTCCCTCCCTCTCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
980 1006 1.010793 TCTCCCTCCCTCTCTCTCTCT 59.989 57.143 0.00 0.00 0.00 3.10
981 1007 1.518367 TCTCCCTCCCTCTCTCTCTC 58.482 60.000 0.00 0.00 0.00 3.20
982 1008 1.782752 CATCTCCCTCCCTCTCTCTCT 59.217 57.143 0.00 0.00 0.00 3.10
990 1016 0.396417 CACGAGACATCTCCCTCCCT 60.396 60.000 3.30 0.00 39.79 4.20
1224 1250 4.745649 AGTGATTTACGTACCTCTCTTGC 58.254 43.478 0.00 0.00 0.00 4.01
1236 1262 6.978343 TTAGGGTTTGATGAGTGATTTACG 57.022 37.500 0.00 0.00 0.00 3.18
1237 1263 7.362660 GGGTTTAGGGTTTGATGAGTGATTTAC 60.363 40.741 0.00 0.00 0.00 2.01
1247 1280 1.816224 CGGTGGGTTTAGGGTTTGATG 59.184 52.381 0.00 0.00 0.00 3.07
1267 1300 4.719369 AACGCTCGAGGCCGTGAC 62.719 66.667 16.99 0.00 37.74 3.67
1269 1302 1.082117 ATAAAACGCTCGAGGCCGTG 61.082 55.000 16.99 0.31 37.74 4.94
1270 1303 0.804933 GATAAAACGCTCGAGGCCGT 60.805 55.000 15.58 13.36 37.74 5.68
1271 1304 0.527817 AGATAAAACGCTCGAGGCCG 60.528 55.000 15.58 12.66 37.74 6.13
1280 1335 7.965045 ACAGACAAGAAGATAAGATAAAACGC 58.035 34.615 0.00 0.00 0.00 4.84
1289 1344 7.176589 ACTAGGGAACAGACAAGAAGATAAG 57.823 40.000 0.00 0.00 0.00 1.73
1307 1458 9.224267 CTCATTCATTCATAACCATAACTAGGG 57.776 37.037 0.00 0.00 0.00 3.53
1311 1462 9.872684 AATCCTCATTCATTCATAACCATAACT 57.127 29.630 0.00 0.00 0.00 2.24
1312 1463 9.903682 CAATCCTCATTCATTCATAACCATAAC 57.096 33.333 0.00 0.00 0.00 1.89
1313 1464 9.081204 CCAATCCTCATTCATTCATAACCATAA 57.919 33.333 0.00 0.00 0.00 1.90
1315 1466 7.014905 CACCAATCCTCATTCATTCATAACCAT 59.985 37.037 0.00 0.00 0.00 3.55
1316 1467 6.321945 CACCAATCCTCATTCATTCATAACCA 59.678 38.462 0.00 0.00 0.00 3.67
1317 1468 6.547141 TCACCAATCCTCATTCATTCATAACC 59.453 38.462 0.00 0.00 0.00 2.85
1318 1469 7.284034 ACTCACCAATCCTCATTCATTCATAAC 59.716 37.037 0.00 0.00 0.00 1.89
1333 1486 4.487714 TCACTATTCCACTCACCAATCC 57.512 45.455 0.00 0.00 0.00 3.01
1341 1569 5.296151 TCCAATCCATCACTATTCCACTC 57.704 43.478 0.00 0.00 0.00 3.51
1346 1574 7.572523 TGACAAATCCAATCCATCACTATTC 57.427 36.000 0.00 0.00 0.00 1.75
1360 1588 2.158559 CCACGGACAATGACAAATCCA 58.841 47.619 0.00 0.00 0.00 3.41
1361 1589 2.420022 CTCCACGGACAATGACAAATCC 59.580 50.000 0.00 0.00 0.00 3.01
1362 1590 3.334691 TCTCCACGGACAATGACAAATC 58.665 45.455 0.00 0.00 0.00 2.17
1363 1591 3.417069 TCTCCACGGACAATGACAAAT 57.583 42.857 0.00 0.00 0.00 2.32
1364 1592 2.920724 TCTCCACGGACAATGACAAA 57.079 45.000 0.00 0.00 0.00 2.83
1380 1608 5.825151 AGAGCAAGTAATAAGGCCATTTCTC 59.175 40.000 5.01 0.00 0.00 2.87
1381 1609 5.591877 CAGAGCAAGTAATAAGGCCATTTCT 59.408 40.000 5.01 0.00 0.00 2.52
1382 1610 5.358160 ACAGAGCAAGTAATAAGGCCATTTC 59.642 40.000 5.01 0.00 0.00 2.17
1383 1611 5.264395 ACAGAGCAAGTAATAAGGCCATTT 58.736 37.500 5.01 0.00 0.00 2.32
1384 1612 4.860022 ACAGAGCAAGTAATAAGGCCATT 58.140 39.130 5.01 0.00 0.00 3.16
1387 1615 4.123506 GAGACAGAGCAAGTAATAAGGCC 58.876 47.826 0.00 0.00 0.00 5.19
1389 1617 4.808364 GCAGAGACAGAGCAAGTAATAAGG 59.192 45.833 0.00 0.00 0.00 2.69
1390 1618 5.414360 TGCAGAGACAGAGCAAGTAATAAG 58.586 41.667 0.00 0.00 34.97 1.73
1392 1620 5.405935 TTGCAGAGACAGAGCAAGTAATA 57.594 39.130 0.00 0.00 42.71 0.98
1393 1621 3.969287 TGCAGAGACAGAGCAAGTAAT 57.031 42.857 0.00 0.00 34.97 1.89
1394 1622 3.751479 TTGCAGAGACAGAGCAAGTAA 57.249 42.857 0.00 0.00 42.71 2.24
1399 1627 4.476628 TCATAATTGCAGAGACAGAGCA 57.523 40.909 0.00 0.00 36.32 4.26
1400 1628 4.213694 CCATCATAATTGCAGAGACAGAGC 59.786 45.833 0.00 0.00 0.00 4.09
1401 1629 5.608449 TCCATCATAATTGCAGAGACAGAG 58.392 41.667 0.00 0.00 0.00 3.35
1402 1630 5.619132 TCCATCATAATTGCAGAGACAGA 57.381 39.130 0.00 0.00 0.00 3.41
1403 1631 6.879276 ATTCCATCATAATTGCAGAGACAG 57.121 37.500 0.00 0.00 0.00 3.51
1404 1632 6.829811 TCAATTCCATCATAATTGCAGAGACA 59.170 34.615 0.00 0.00 41.82 3.41
1420 1648 4.880120 CAGCAGACAGTGTATCAATTCCAT 59.120 41.667 0.00 0.00 0.00 3.41
1428 1656 2.964740 TGAAGCAGCAGACAGTGTATC 58.035 47.619 0.00 0.00 0.00 2.24
1429 1657 3.407424 TTGAAGCAGCAGACAGTGTAT 57.593 42.857 0.00 0.00 0.00 2.29
1430 1658 2.908688 TTGAAGCAGCAGACAGTGTA 57.091 45.000 0.00 0.00 0.00 2.90
1431 1659 2.042686 TTTGAAGCAGCAGACAGTGT 57.957 45.000 0.00 0.00 0.00 3.55
1432 1660 2.287427 CCTTTTGAAGCAGCAGACAGTG 60.287 50.000 0.00 0.00 0.00 3.66
1433 1661 1.952296 CCTTTTGAAGCAGCAGACAGT 59.048 47.619 0.00 0.00 0.00 3.55
1434 1662 2.224606 TCCTTTTGAAGCAGCAGACAG 58.775 47.619 0.00 0.00 0.00 3.51
1435 1663 2.346766 TCCTTTTGAAGCAGCAGACA 57.653 45.000 0.00 0.00 0.00 3.41
1436 1664 3.715628 TTTCCTTTTGAAGCAGCAGAC 57.284 42.857 0.00 0.00 33.63 3.51
1437 1665 4.942761 AATTTCCTTTTGAAGCAGCAGA 57.057 36.364 0.00 0.00 33.63 4.26
1438 1666 6.647895 ACAATAATTTCCTTTTGAAGCAGCAG 59.352 34.615 0.00 0.00 33.63 4.24
1439 1667 6.523840 ACAATAATTTCCTTTTGAAGCAGCA 58.476 32.000 0.00 0.00 33.63 4.41
1440 1668 6.870439 AGACAATAATTTCCTTTTGAAGCAGC 59.130 34.615 0.00 0.00 33.63 5.25
1441 1669 7.869429 ACAGACAATAATTTCCTTTTGAAGCAG 59.131 33.333 0.00 0.00 33.63 4.24
1442 1670 7.652909 CACAGACAATAATTTCCTTTTGAAGCA 59.347 33.333 0.00 0.00 33.63 3.91
1443 1671 7.116805 CCACAGACAATAATTTCCTTTTGAAGC 59.883 37.037 0.00 0.00 33.63 3.86
1444 1672 8.359642 TCCACAGACAATAATTTCCTTTTGAAG 58.640 33.333 0.00 0.00 33.63 3.02
1445 1673 8.243961 TCCACAGACAATAATTTCCTTTTGAA 57.756 30.769 0.00 0.00 0.00 2.69
1446 1674 7.723616 TCTCCACAGACAATAATTTCCTTTTGA 59.276 33.333 0.00 0.00 0.00 2.69
1447 1675 7.885297 TCTCCACAGACAATAATTTCCTTTTG 58.115 34.615 0.00 0.00 0.00 2.44
1448 1676 8.477419 TTCTCCACAGACAATAATTTCCTTTT 57.523 30.769 0.00 0.00 0.00 2.27
1449 1677 8.477419 TTTCTCCACAGACAATAATTTCCTTT 57.523 30.769 0.00 0.00 0.00 3.11
1450 1678 8.526147 CATTTCTCCACAGACAATAATTTCCTT 58.474 33.333 0.00 0.00 0.00 3.36
1451 1679 7.123247 CCATTTCTCCACAGACAATAATTTCCT 59.877 37.037 0.00 0.00 0.00 3.36
1452 1680 7.260603 CCATTTCTCCACAGACAATAATTTCC 58.739 38.462 0.00 0.00 0.00 3.13
1453 1681 6.753744 GCCATTTCTCCACAGACAATAATTTC 59.246 38.462 0.00 0.00 0.00 2.17
1454 1682 6.351286 GGCCATTTCTCCACAGACAATAATTT 60.351 38.462 0.00 0.00 0.00 1.82
1455 1683 5.127682 GGCCATTTCTCCACAGACAATAATT 59.872 40.000 0.00 0.00 0.00 1.40
1456 1684 4.646492 GGCCATTTCTCCACAGACAATAAT 59.354 41.667 0.00 0.00 0.00 1.28
1457 1685 4.016444 GGCCATTTCTCCACAGACAATAA 58.984 43.478 0.00 0.00 0.00 1.40
1458 1686 3.266772 AGGCCATTTCTCCACAGACAATA 59.733 43.478 5.01 0.00 0.00 1.90
1459 1687 2.042162 AGGCCATTTCTCCACAGACAAT 59.958 45.455 5.01 0.00 0.00 2.71
1460 1688 1.425066 AGGCCATTTCTCCACAGACAA 59.575 47.619 5.01 0.00 0.00 3.18
1461 1689 1.067295 AGGCCATTTCTCCACAGACA 58.933 50.000 5.01 0.00 0.00 3.41
1462 1690 2.206576 AAGGCCATTTCTCCACAGAC 57.793 50.000 5.01 0.00 0.00 3.51
1463 1691 4.263905 ACAATAAGGCCATTTCTCCACAGA 60.264 41.667 5.01 0.00 0.00 3.41
1464 1692 4.019174 ACAATAAGGCCATTTCTCCACAG 58.981 43.478 5.01 0.00 0.00 3.66
1465 1693 4.046286 ACAATAAGGCCATTTCTCCACA 57.954 40.909 5.01 0.00 0.00 4.17
1466 1694 4.747810 CAACAATAAGGCCATTTCTCCAC 58.252 43.478 5.01 0.00 0.00 4.02
1467 1695 3.195396 GCAACAATAAGGCCATTTCTCCA 59.805 43.478 5.01 0.00 0.00 3.86
1468 1696 3.448660 AGCAACAATAAGGCCATTTCTCC 59.551 43.478 5.01 0.00 0.00 3.71
1469 1697 4.400567 AGAGCAACAATAAGGCCATTTCTC 59.599 41.667 5.01 0.00 0.00 2.87
1470 1698 4.159135 CAGAGCAACAATAAGGCCATTTCT 59.841 41.667 5.01 0.00 0.00 2.52
1471 1699 4.082026 ACAGAGCAACAATAAGGCCATTTC 60.082 41.667 5.01 0.00 0.00 2.17
1472 1700 3.834231 ACAGAGCAACAATAAGGCCATTT 59.166 39.130 5.01 0.00 0.00 2.32
1473 1701 3.434309 ACAGAGCAACAATAAGGCCATT 58.566 40.909 5.01 0.00 0.00 3.16
1474 1702 3.019564 GACAGAGCAACAATAAGGCCAT 58.980 45.455 5.01 0.00 0.00 4.40
1475 1703 2.224744 TGACAGAGCAACAATAAGGCCA 60.225 45.455 5.01 0.00 0.00 5.36
1476 1704 2.436417 TGACAGAGCAACAATAAGGCC 58.564 47.619 0.00 0.00 0.00 5.19
1477 1705 3.733077 GCATGACAGAGCAACAATAAGGC 60.733 47.826 0.00 0.00 0.00 4.35
1478 1706 3.441222 TGCATGACAGAGCAACAATAAGG 59.559 43.478 0.00 0.00 37.90 2.69
1479 1707 4.690184 TGCATGACAGAGCAACAATAAG 57.310 40.909 0.00 0.00 37.90 1.73
1487 1715 4.277423 CCATCATAATTGCATGACAGAGCA 59.723 41.667 0.00 1.54 37.74 4.26
1488 1716 4.517832 TCCATCATAATTGCATGACAGAGC 59.482 41.667 0.00 0.00 37.74 4.09
1489 1717 6.628919 TTCCATCATAATTGCATGACAGAG 57.371 37.500 0.00 0.00 37.74 3.35
1490 1718 7.285858 TCAATTCCATCATAATTGCATGACAGA 59.714 33.333 0.00 0.00 41.82 3.41
1491 1719 7.430441 TCAATTCCATCATAATTGCATGACAG 58.570 34.615 0.00 0.00 41.82 3.51
1492 1720 7.349412 TCAATTCCATCATAATTGCATGACA 57.651 32.000 0.00 0.00 41.82 3.58
1493 1721 9.350357 GTATCAATTCCATCATAATTGCATGAC 57.650 33.333 0.00 0.00 41.82 3.06
1494 1722 9.080097 TGTATCAATTCCATCATAATTGCATGA 57.920 29.630 0.00 0.00 41.82 3.07
1495 1723 9.135843 GTGTATCAATTCCATCATAATTGCATG 57.864 33.333 0.00 0.00 41.82 4.06
1496 1724 9.085645 AGTGTATCAATTCCATCATAATTGCAT 57.914 29.630 0.00 0.00 41.82 3.96
1497 1725 8.354426 CAGTGTATCAATTCCATCATAATTGCA 58.646 33.333 0.00 0.00 41.82 4.08
1498 1726 8.355169 ACAGTGTATCAATTCCATCATAATTGC 58.645 33.333 0.00 0.00 41.82 3.56
1499 1727 9.888878 GACAGTGTATCAATTCCATCATAATTG 57.111 33.333 0.00 0.00 42.89 2.32
1500 1728 9.857656 AGACAGTGTATCAATTCCATCATAATT 57.142 29.630 0.00 0.00 0.00 1.40
1501 1729 9.281371 CAGACAGTGTATCAATTCCATCATAAT 57.719 33.333 0.00 0.00 0.00 1.28
1502 1730 7.227314 GCAGACAGTGTATCAATTCCATCATAA 59.773 37.037 0.00 0.00 0.00 1.90
1503 1731 6.707608 GCAGACAGTGTATCAATTCCATCATA 59.292 38.462 0.00 0.00 0.00 2.15
1504 1732 5.530171 GCAGACAGTGTATCAATTCCATCAT 59.470 40.000 0.00 0.00 0.00 2.45
1505 1733 4.877823 GCAGACAGTGTATCAATTCCATCA 59.122 41.667 0.00 0.00 0.00 3.07
1506 1734 5.007430 CAGCAGACAGTGTATCAATTCCATC 59.993 44.000 0.00 0.00 0.00 3.51
1507 1735 4.880120 CAGCAGACAGTGTATCAATTCCAT 59.120 41.667 0.00 0.00 0.00 3.41
1508 1736 4.256110 CAGCAGACAGTGTATCAATTCCA 58.744 43.478 0.00 0.00 0.00 3.53
1509 1737 3.064545 GCAGCAGACAGTGTATCAATTCC 59.935 47.826 0.00 0.00 0.00 3.01
1510 1738 3.937706 AGCAGCAGACAGTGTATCAATTC 59.062 43.478 0.00 0.00 0.00 2.17
1511 1739 3.947868 AGCAGCAGACAGTGTATCAATT 58.052 40.909 0.00 0.00 0.00 2.32
1512 1740 3.623906 AGCAGCAGACAGTGTATCAAT 57.376 42.857 0.00 0.00 0.00 2.57
1513 1741 3.244181 TGAAGCAGCAGACAGTGTATCAA 60.244 43.478 0.00 0.00 0.00 2.57
1514 1742 2.299867 TGAAGCAGCAGACAGTGTATCA 59.700 45.455 0.00 0.00 0.00 2.15
1515 1743 2.964740 TGAAGCAGCAGACAGTGTATC 58.035 47.619 0.00 0.00 0.00 2.24
1516 1744 3.407424 TTGAAGCAGCAGACAGTGTAT 57.593 42.857 0.00 0.00 0.00 2.29
1517 1745 2.908688 TTGAAGCAGCAGACAGTGTA 57.091 45.000 0.00 0.00 0.00 2.90
1518 1746 2.042686 TTTGAAGCAGCAGACAGTGT 57.957 45.000 0.00 0.00 0.00 3.55
1519 1747 2.287427 CCTTTTGAAGCAGCAGACAGTG 60.287 50.000 0.00 0.00 0.00 3.66
1520 1748 1.952296 CCTTTTGAAGCAGCAGACAGT 59.048 47.619 0.00 0.00 0.00 3.55
1521 1749 2.224606 TCCTTTTGAAGCAGCAGACAG 58.775 47.619 0.00 0.00 0.00 3.51
1522 1750 2.346766 TCCTTTTGAAGCAGCAGACA 57.653 45.000 0.00 0.00 0.00 3.41
1523 1751 3.715628 TTTCCTTTTGAAGCAGCAGAC 57.284 42.857 0.00 0.00 33.63 3.51
1524 1752 4.942761 AATTTCCTTTTGAAGCAGCAGA 57.057 36.364 0.00 0.00 33.63 4.26
1525 1753 6.647895 ACAATAATTTCCTTTTGAAGCAGCAG 59.352 34.615 0.00 0.00 33.63 4.24
1526 1754 6.523840 ACAATAATTTCCTTTTGAAGCAGCA 58.476 32.000 0.00 0.00 33.63 4.41
1527 1755 6.870439 AGACAATAATTTCCTTTTGAAGCAGC 59.130 34.615 0.00 0.00 33.63 5.25
1528 1756 7.869429 ACAGACAATAATTTCCTTTTGAAGCAG 59.131 33.333 0.00 0.00 33.63 4.24
1529 1757 7.652909 CACAGACAATAATTTCCTTTTGAAGCA 59.347 33.333 0.00 0.00 33.63 3.91
1530 1758 7.116805 CCACAGACAATAATTTCCTTTTGAAGC 59.883 37.037 0.00 0.00 33.63 3.86
1531 1759 8.359642 TCCACAGACAATAATTTCCTTTTGAAG 58.640 33.333 0.00 0.00 33.63 3.02
1532 1760 8.243961 TCCACAGACAATAATTTCCTTTTGAA 57.756 30.769 0.00 0.00 0.00 2.69
1533 1761 7.723616 TCTCCACAGACAATAATTTCCTTTTGA 59.276 33.333 0.00 0.00 0.00 2.69
1534 1762 7.885297 TCTCCACAGACAATAATTTCCTTTTG 58.115 34.615 0.00 0.00 0.00 2.44
1535 1763 8.477419 TTCTCCACAGACAATAATTTCCTTTT 57.523 30.769 0.00 0.00 0.00 2.27
1536 1764 8.477419 TTTCTCCACAGACAATAATTTCCTTT 57.523 30.769 0.00 0.00 0.00 3.11
1537 1765 8.526147 CATTTCTCCACAGACAATAATTTCCTT 58.474 33.333 0.00 0.00 0.00 3.36
1538 1766 7.123247 CCATTTCTCCACAGACAATAATTTCCT 59.877 37.037 0.00 0.00 0.00 3.36
1539 1767 7.260603 CCATTTCTCCACAGACAATAATTTCC 58.739 38.462 0.00 0.00 0.00 3.13
1540 1768 6.753744 GCCATTTCTCCACAGACAATAATTTC 59.246 38.462 0.00 0.00 0.00 2.17
1541 1769 6.351286 GGCCATTTCTCCACAGACAATAATTT 60.351 38.462 0.00 0.00 0.00 1.82
1542 1770 5.127682 GGCCATTTCTCCACAGACAATAATT 59.872 40.000 0.00 0.00 0.00 1.40
1543 1771 4.646492 GGCCATTTCTCCACAGACAATAAT 59.354 41.667 0.00 0.00 0.00 1.28
1544 1772 4.016444 GGCCATTTCTCCACAGACAATAA 58.984 43.478 0.00 0.00 0.00 1.40
1545 1773 3.266772 AGGCCATTTCTCCACAGACAATA 59.733 43.478 5.01 0.00 0.00 1.90
1546 1774 2.042162 AGGCCATTTCTCCACAGACAAT 59.958 45.455 5.01 0.00 0.00 2.71
1547 1775 1.425066 AGGCCATTTCTCCACAGACAA 59.575 47.619 5.01 0.00 0.00 3.18
1548 1776 1.067295 AGGCCATTTCTCCACAGACA 58.933 50.000 5.01 0.00 0.00 3.41
1549 1777 2.206576 AAGGCCATTTCTCCACAGAC 57.793 50.000 5.01 0.00 0.00 3.51
1550 1778 4.263905 ACAATAAGGCCATTTCTCCACAGA 60.264 41.667 5.01 0.00 0.00 3.41
1551 1779 4.019174 ACAATAAGGCCATTTCTCCACAG 58.981 43.478 5.01 0.00 0.00 3.66
1552 1780 4.046286 ACAATAAGGCCATTTCTCCACA 57.954 40.909 5.01 0.00 0.00 4.17
1553 1781 4.747810 CAACAATAAGGCCATTTCTCCAC 58.252 43.478 5.01 0.00 0.00 4.02
1554 1782 3.195396 GCAACAATAAGGCCATTTCTCCA 59.805 43.478 5.01 0.00 0.00 3.86
1555 1783 3.448660 AGCAACAATAAGGCCATTTCTCC 59.551 43.478 5.01 0.00 0.00 3.71
1556 1784 4.400567 AGAGCAACAATAAGGCCATTTCTC 59.599 41.667 5.01 0.00 0.00 2.87
1557 1785 4.159135 CAGAGCAACAATAAGGCCATTTCT 59.841 41.667 5.01 0.00 0.00 2.52
1558 1786 4.082026 ACAGAGCAACAATAAGGCCATTTC 60.082 41.667 5.01 0.00 0.00 2.17
1559 1787 3.834231 ACAGAGCAACAATAAGGCCATTT 59.166 39.130 5.01 0.00 0.00 2.32
1560 1788 3.434309 ACAGAGCAACAATAAGGCCATT 58.566 40.909 5.01 0.00 0.00 3.16
1561 1789 3.019564 GACAGAGCAACAATAAGGCCAT 58.980 45.455 5.01 0.00 0.00 4.40
1562 1790 2.224744 TGACAGAGCAACAATAAGGCCA 60.225 45.455 5.01 0.00 0.00 5.36
1563 1791 2.436417 TGACAGAGCAACAATAAGGCC 58.564 47.619 0.00 0.00 0.00 5.19
1564 1792 3.733077 GCATGACAGAGCAACAATAAGGC 60.733 47.826 0.00 0.00 0.00 4.35
1565 1793 3.441222 TGCATGACAGAGCAACAATAAGG 59.559 43.478 0.00 0.00 37.90 2.69
1566 1794 4.690184 TGCATGACAGAGCAACAATAAG 57.310 40.909 0.00 0.00 37.90 1.73
1574 1802 4.277423 CCATCATAATTGCATGACAGAGCA 59.723 41.667 0.00 1.54 37.74 4.26
1575 1803 4.517832 TCCATCATAATTGCATGACAGAGC 59.482 41.667 0.00 0.00 37.74 4.09
1576 1804 6.628919 TTCCATCATAATTGCATGACAGAG 57.371 37.500 0.00 0.00 37.74 3.35
1577 1805 7.285858 TCAATTCCATCATAATTGCATGACAGA 59.714 33.333 0.00 0.00 41.82 3.41
1578 1806 7.430441 TCAATTCCATCATAATTGCATGACAG 58.570 34.615 0.00 0.00 41.82 3.51
1579 1807 7.349412 TCAATTCCATCATAATTGCATGACA 57.651 32.000 0.00 0.00 41.82 3.58
1580 1808 9.350357 GTATCAATTCCATCATAATTGCATGAC 57.650 33.333 0.00 0.00 41.82 3.06
1581 1809 9.080097 TGTATCAATTCCATCATAATTGCATGA 57.920 29.630 0.00 0.00 41.82 3.07
1582 1810 9.135843 GTGTATCAATTCCATCATAATTGCATG 57.864 33.333 0.00 0.00 41.82 4.06
1583 1811 9.085645 AGTGTATCAATTCCATCATAATTGCAT 57.914 29.630 0.00 0.00 41.82 3.96
1584 1812 8.354426 CAGTGTATCAATTCCATCATAATTGCA 58.646 33.333 0.00 0.00 41.82 4.08
1585 1813 8.355169 ACAGTGTATCAATTCCATCATAATTGC 58.645 33.333 0.00 0.00 41.82 3.56
1586 1814 9.888878 GACAGTGTATCAATTCCATCATAATTG 57.111 33.333 0.00 0.00 42.89 2.32
1587 1815 9.857656 AGACAGTGTATCAATTCCATCATAATT 57.142 29.630 0.00 0.00 0.00 1.40
1588 1816 9.281371 CAGACAGTGTATCAATTCCATCATAAT 57.719 33.333 0.00 0.00 0.00 1.28
1589 1817 7.227314 GCAGACAGTGTATCAATTCCATCATAA 59.773 37.037 0.00 0.00 0.00 1.90
1590 1818 6.707608 GCAGACAGTGTATCAATTCCATCATA 59.292 38.462 0.00 0.00 0.00 2.15
1591 1819 5.530171 GCAGACAGTGTATCAATTCCATCAT 59.470 40.000 0.00 0.00 0.00 2.45
1592 1820 4.877823 GCAGACAGTGTATCAATTCCATCA 59.122 41.667 0.00 0.00 0.00 3.07
1593 1821 5.121811 AGCAGACAGTGTATCAATTCCATC 58.878 41.667 0.00 0.00 0.00 3.51
1594 1822 5.108187 AGCAGACAGTGTATCAATTCCAT 57.892 39.130 0.00 0.00 0.00 3.41
1595 1823 4.558226 AGCAGACAGTGTATCAATTCCA 57.442 40.909 0.00 0.00 0.00 3.53
1596 1824 5.886960 AAAGCAGACAGTGTATCAATTCC 57.113 39.130 0.00 0.00 0.00 3.01
1597 1825 9.334693 CTTTTAAAGCAGACAGTGTATCAATTC 57.665 33.333 0.00 0.00 0.00 2.17
1598 1826 8.299570 CCTTTTAAAGCAGACAGTGTATCAATT 58.700 33.333 0.00 0.00 0.00 2.32
1599 1827 7.094205 CCCTTTTAAAGCAGACAGTGTATCAAT 60.094 37.037 0.00 0.00 0.00 2.57
1600 1828 6.206634 CCCTTTTAAAGCAGACAGTGTATCAA 59.793 38.462 0.00 0.00 0.00 2.57
1601 1829 5.705441 CCCTTTTAAAGCAGACAGTGTATCA 59.295 40.000 0.00 0.00 0.00 2.15
1602 1830 5.938125 TCCCTTTTAAAGCAGACAGTGTATC 59.062 40.000 0.00 0.00 0.00 2.24
1633 1861 1.066573 CAGAGCAGGGAGACAACGAAT 60.067 52.381 0.00 0.00 0.00 3.34
1637 1865 0.321122 CACCAGAGCAGGGAGACAAC 60.321 60.000 0.00 0.00 0.00 3.32
1642 1870 2.279069 ACGTCACCAGAGCAGGGAG 61.279 63.158 0.00 0.00 0.00 4.30
1646 1875 1.373497 GGACACGTCACCAGAGCAG 60.373 63.158 0.00 0.00 0.00 4.24
1654 1883 0.249155 TTCGGTTGAGGACACGTCAC 60.249 55.000 0.00 0.00 0.00 3.67
1658 1887 2.289547 ACAATTTTCGGTTGAGGACACG 59.710 45.455 0.00 0.00 0.00 4.49
1695 1924 5.479306 ACGAACATGCTTAACATCTGTAGT 58.521 37.500 0.00 0.00 36.64 2.73
1717 2111 5.972382 TGGAAACATTAGCGTTGTTGTAAAC 59.028 36.000 3.29 0.00 41.60 2.01
1735 2129 7.961325 ACATCAAATTTGTTACCATGGAAAC 57.039 32.000 21.47 4.54 0.00 2.78
1765 2159 5.362717 ACCGTCTGATCTTACATTATGGTCA 59.637 40.000 0.00 0.00 0.00 4.02
1768 2162 7.207383 TGTAACCGTCTGATCTTACATTATGG 58.793 38.462 0.00 0.00 0.00 2.74
1777 2171 5.661056 TTCTGATGTAACCGTCTGATCTT 57.339 39.130 0.00 0.00 35.35 2.40
1783 2177 5.292765 CATGCTATTCTGATGTAACCGTCT 58.707 41.667 0.00 0.00 0.00 4.18
1787 2181 4.392940 AGGCATGCTATTCTGATGTAACC 58.607 43.478 18.92 0.00 0.00 2.85
1854 2248 8.828751 ACCCCTAACTGAAAATACACAACTATA 58.171 33.333 0.00 0.00 0.00 1.31
1858 2252 7.662669 TCTTACCCCTAACTGAAAATACACAAC 59.337 37.037 0.00 0.00 0.00 3.32
1866 2260 9.901172 GATTCTAATCTTACCCCTAACTGAAAA 57.099 33.333 0.00 0.00 32.66 2.29
1867 2261 9.280456 AGATTCTAATCTTACCCCTAACTGAAA 57.720 33.333 0.00 0.00 42.96 2.69
1868 2262 8.705594 CAGATTCTAATCTTACCCCTAACTGAA 58.294 37.037 2.41 0.00 42.96 3.02
1869 2263 7.202011 GCAGATTCTAATCTTACCCCTAACTGA 60.202 40.741 2.41 0.00 42.96 3.41
1870 2264 6.931840 GCAGATTCTAATCTTACCCCTAACTG 59.068 42.308 2.41 0.00 42.96 3.16
1871 2265 6.043358 GGCAGATTCTAATCTTACCCCTAACT 59.957 42.308 2.41 0.00 42.96 2.24
1872 2266 6.231951 GGCAGATTCTAATCTTACCCCTAAC 58.768 44.000 2.41 0.00 42.96 2.34
1917 2311 3.607078 CGAAGTTGGTTAAAGTCTGCTGC 60.607 47.826 0.00 0.00 0.00 5.25
1919 2313 2.548480 GCGAAGTTGGTTAAAGTCTGCT 59.452 45.455 0.00 0.00 0.00 4.24
1920 2314 2.289547 TGCGAAGTTGGTTAAAGTCTGC 59.710 45.455 0.00 0.00 0.00 4.26
1921 2315 3.607078 GCTGCGAAGTTGGTTAAAGTCTG 60.607 47.826 0.00 0.00 0.00 3.51
1922 2316 2.548480 GCTGCGAAGTTGGTTAAAGTCT 59.452 45.455 0.00 0.00 0.00 3.24
1923 2317 2.289547 TGCTGCGAAGTTGGTTAAAGTC 59.710 45.455 0.00 0.00 0.00 3.01
1924 2318 2.290641 CTGCTGCGAAGTTGGTTAAAGT 59.709 45.455 0.00 0.00 0.00 2.66
1925 2319 2.290641 ACTGCTGCGAAGTTGGTTAAAG 59.709 45.455 0.00 0.00 0.00 1.85
1926 2320 2.294074 ACTGCTGCGAAGTTGGTTAAA 58.706 42.857 0.00 0.00 0.00 1.52
1927 2321 1.961793 ACTGCTGCGAAGTTGGTTAA 58.038 45.000 0.00 0.00 0.00 2.01
1928 2322 2.823924 TACTGCTGCGAAGTTGGTTA 57.176 45.000 0.00 0.00 0.00 2.85
1929 2323 1.961793 TTACTGCTGCGAAGTTGGTT 58.038 45.000 0.00 0.00 0.00 3.67
1930 2324 1.961793 TTTACTGCTGCGAAGTTGGT 58.038 45.000 0.00 0.00 0.00 3.67
1931 2325 2.032799 TGTTTTACTGCTGCGAAGTTGG 59.967 45.455 0.00 0.00 0.00 3.77
1932 2326 3.035942 GTGTTTTACTGCTGCGAAGTTG 58.964 45.455 0.00 0.00 0.00 3.16
1933 2327 2.680841 TGTGTTTTACTGCTGCGAAGTT 59.319 40.909 0.00 0.00 0.00 2.66
1934 2328 2.285083 TGTGTTTTACTGCTGCGAAGT 58.715 42.857 0.00 0.00 0.00 3.01
1939 2333 3.971032 ACTTCTGTGTTTTACTGCTGC 57.029 42.857 0.00 0.00 0.00 5.25
1943 2337 7.652300 TGTGCTATACTTCTGTGTTTTACTG 57.348 36.000 0.00 0.00 0.00 2.74
1954 2348 5.923204 AGCTGCTTAATGTGCTATACTTCT 58.077 37.500 0.00 0.00 33.64 2.85
1959 2353 6.816136 TGTCTAAGCTGCTTAATGTGCTATA 58.184 36.000 21.34 0.00 35.09 1.31
2008 2410 7.771826 GGTGCCAAAAGACATTACTATTAGGTA 59.228 37.037 0.00 0.00 0.00 3.08
2038 2443 9.151471 TCATCAACAAACTGCTAGTTATTACTC 57.849 33.333 2.60 0.00 37.47 2.59
2046 2451 9.630098 CAAAATATTCATCAACAAACTGCTAGT 57.370 29.630 0.00 0.00 0.00 2.57
2080 2488 3.814842 CCAATCTGTACAGTTCAGTTGCA 59.185 43.478 21.99 0.05 34.86 4.08
2091 2499 4.582240 TCATTTGCAACACCAATCTGTACA 59.418 37.500 0.00 0.00 0.00 2.90
2096 2504 4.040706 ACCATTCATTTGCAACACCAATCT 59.959 37.500 0.00 0.00 0.00 2.40
2116 2524 5.835280 GGGTAGGCTAGTATTACTGTTACCA 59.165 44.000 18.85 0.00 0.00 3.25
2130 2538 1.147153 GCAAGCTGGGGTAGGCTAG 59.853 63.158 0.00 0.00 37.87 3.42
2172 2589 0.764890 TCAGTGCAGCTGGTTTAGGT 59.235 50.000 17.12 0.00 45.08 3.08
2173 2590 1.537202 GTTCAGTGCAGCTGGTTTAGG 59.463 52.381 17.12 0.00 45.08 2.69
2193 2614 1.271379 TGCTCTGTACCTGTTACCACG 59.729 52.381 0.00 0.00 0.00 4.94
2208 2629 2.900546 AGTAGGCACTTGTTACTGCTCT 59.099 45.455 0.00 0.00 41.75 4.09
2306 2727 1.097232 CATGGCTTCGCAATTCCTCA 58.903 50.000 0.00 0.00 0.00 3.86
2396 2817 0.462759 CGAACTCCTTGGCATCCTCC 60.463 60.000 0.00 0.00 0.00 4.30
2674 3095 3.914364 GCGGCATCAACTTAGAAACTTTG 59.086 43.478 0.00 0.00 0.00 2.77
2699 3120 1.070821 ACACATTCAGCGTGTCGATG 58.929 50.000 0.95 0.95 44.11 3.84
2716 3137 1.289160 CTCCTCCCAAGAATCCCACA 58.711 55.000 0.00 0.00 0.00 4.17
2811 3232 1.814394 TCGTGATAACTGTACGCCACT 59.186 47.619 0.00 0.00 37.70 4.00
2889 3310 1.214175 TGTTTGTGGAGAGCAAAGGGA 59.786 47.619 0.00 0.00 36.63 4.20
2928 3349 0.039074 GACAGATATACGCGGCAGCT 60.039 55.000 12.47 0.00 42.32 4.24
2971 3392 1.741401 GCCGGCCCTTGCAATTTTC 60.741 57.895 18.11 0.00 40.13 2.29
2977 3398 3.407083 TATCAGCCGGCCCTTGCA 61.407 61.111 26.15 5.81 40.13 4.08
3138 3559 3.815401 ACCAACATTGACAGTACTCTTGC 59.185 43.478 0.00 0.00 0.00 4.01
3165 3586 3.870633 ACGGTAAGACAGAGATGAACC 57.129 47.619 0.00 0.00 0.00 3.62
3347 3768 5.864418 ACAGCCAAGAAACCGTCTATATA 57.136 39.130 0.00 0.00 34.56 0.86
3468 3889 3.118956 ACCGGCACAGAATTTGTTTTCAA 60.119 39.130 0.00 0.00 38.16 2.69
3526 3948 1.450312 CCATGGAGTCCACGGCTTC 60.450 63.158 15.86 0.00 35.80 3.86
3570 3992 4.783621 TCTGCAGCATCACCGGCC 62.784 66.667 9.47 0.00 0.00 6.13
3579 4001 2.047844 GCCTTCGACTCTGCAGCA 60.048 61.111 9.47 0.00 0.00 4.41
3608 4030 1.564348 ACCCACACCAGTCAAGTTTCT 59.436 47.619 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.