Multiple sequence alignment - TraesCS5B01G171700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G171700 chr5B 100.000 6442 0 0 1 6442 316369401 316362960 0.000000e+00 11897.0
1 TraesCS5B01G171700 chr5B 83.333 78 7 6 6230 6304 654530275 654530349 4.170000e-07 67.6
2 TraesCS5B01G171700 chr5B 96.774 31 1 0 6309 6339 710798740 710798770 1.200000e-02 52.8
3 TraesCS5B01G171700 chr5A 93.847 2324 75 30 1 2304 367599319 367597044 0.000000e+00 3437.0
4 TraesCS5B01G171700 chr5A 94.189 1652 48 17 2301 3934 367596942 367595321 0.000000e+00 2475.0
5 TraesCS5B01G171700 chr5A 92.206 911 45 11 5026 5919 367594019 367593118 0.000000e+00 1266.0
6 TraesCS5B01G171700 chr5A 93.333 435 22 4 4569 4996 367595214 367594780 2.530000e-178 636.0
7 TraesCS5B01G171700 chr5A 94.737 95 5 0 6348 6442 367592997 367592903 1.450000e-31 148.0
8 TraesCS5B01G171700 chr5A 98.571 70 1 0 4986 5055 367594088 367594019 2.440000e-24 124.0
9 TraesCS5B01G171700 chr5A 100.000 36 0 0 2013 2048 367597248 367597213 4.170000e-07 67.6
10 TraesCS5B01G171700 chr5D 94.410 2111 88 18 1 2099 278279739 278277647 0.000000e+00 3217.0
11 TraesCS5B01G171700 chr5D 94.150 2000 59 19 2115 4095 278277668 278275708 0.000000e+00 2992.0
12 TraesCS5B01G171700 chr5D 92.785 1386 60 20 4564 5919 278275113 278273738 0.000000e+00 1969.0
13 TraesCS5B01G171700 chr5D 94.837 523 16 3 4051 4567 278275710 278275193 0.000000e+00 806.0
14 TraesCS5B01G171700 chr5D 97.895 95 2 0 6348 6442 278273526 278273432 1.440000e-36 165.0
15 TraesCS5B01G171700 chr5D 97.143 35 1 0 2013 2047 278277667 278277633 6.980000e-05 60.2
16 TraesCS5B01G171700 chr4B 90.816 98 8 1 4574 4671 576192126 576192222 5.240000e-26 130.0
17 TraesCS5B01G171700 chr4B 93.750 80 5 0 5910 5989 126323860 126323939 3.150000e-23 121.0
18 TraesCS5B01G171700 chr3D 88.119 101 12 0 4571 4671 568496384 568496484 3.150000e-23 121.0
19 TraesCS5B01G171700 chr3D 85.294 68 10 0 4603 4670 579575859 579575792 3.220000e-08 71.3
20 TraesCS5B01G171700 chr3D 92.683 41 3 0 6233 6273 591241021 591241061 6.980000e-05 60.2
21 TraesCS5B01G171700 chr2A 92.683 82 6 0 5908 5989 158458818 158458737 1.130000e-22 119.0
22 TraesCS5B01G171700 chr6D 92.593 81 6 0 5909 5989 140539084 140539164 4.080000e-22 117.0
23 TraesCS5B01G171700 chr4A 92.593 81 5 1 5909 5989 1072349 1072270 1.470000e-21 115.0
24 TraesCS5B01G171700 chr4A 91.803 61 5 0 6236 6296 731241038 731241098 1.150000e-12 86.1
25 TraesCS5B01G171700 chr4A 96.078 51 2 0 4620 4670 465545728 465545678 4.140000e-12 84.2
26 TraesCS5B01G171700 chr3B 92.500 80 6 0 5910 5989 597821189 597821268 1.470000e-21 115.0
27 TraesCS5B01G171700 chr7A 93.421 76 5 0 5914 5989 324925199 324925124 5.280000e-21 113.0
28 TraesCS5B01G171700 chr7A 100.000 28 0 0 6234 6261 678142624 678142651 1.200000e-02 52.8
29 TraesCS5B01G171700 chr2B 93.506 77 4 1 5917 5993 247870513 247870438 5.280000e-21 113.0
30 TraesCS5B01G171700 chrUn 89.773 88 7 1 5902 5989 80093503 80093588 1.900000e-20 111.0
31 TraesCS5B01G171700 chr1D 86.735 98 11 2 5892 5989 216017872 216017967 2.460000e-19 108.0
32 TraesCS5B01G171700 chr1D 88.732 71 8 0 6234 6304 331509902 331509832 3.200000e-13 87.9
33 TraesCS5B01G171700 chr7B 91.304 69 6 0 6235 6303 143328200 143328268 1.910000e-15 95.3
34 TraesCS5B01G171700 chr7B 92.188 64 5 0 6236 6299 475364479 475364416 2.470000e-14 91.6
35 TraesCS5B01G171700 chr1A 90.000 60 6 0 6240 6299 301784665 301784606 1.930000e-10 78.7
36 TraesCS5B01G171700 chr1A 86.441 59 6 2 4574 4631 241320972 241321029 5.390000e-06 63.9
37 TraesCS5B01G171700 chr3A 95.745 47 2 0 4625 4671 164278521 164278567 6.930000e-10 76.8
38 TraesCS5B01G171700 chr3A 96.970 33 1 0 6308 6340 693616504 693616536 1.000000e-03 56.5
39 TraesCS5B01G171700 chr3A 100.000 29 0 0 4643 4671 629217492 629217520 3.000000e-03 54.7
40 TraesCS5B01G171700 chr6B 81.081 74 8 6 6234 6304 677206038 677205968 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G171700 chr5B 316362960 316369401 6441 True 11897.000000 11897 100.000000 1 6442 1 chr5B.!!$R1 6441
1 TraesCS5B01G171700 chr5A 367592903 367599319 6416 True 1164.800000 3437 95.269000 1 6442 7 chr5A.!!$R1 6441
2 TraesCS5B01G171700 chr5D 278273432 278279739 6307 True 1534.866667 3217 95.203333 1 6442 6 chr5D.!!$R1 6441

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
846 865 0.245539 CCAAAACGCTCCCTCGTCTA 59.754 55.000 0.00 0.0 42.46 2.59 F
1396 1419 0.038166 CATGGGGCTGTGTTGGTAGT 59.962 55.000 0.00 0.0 0.00 2.73 F
2061 2093 1.725665 GCACATGCAGCGTCATCAT 59.274 52.632 0.00 0.0 41.59 2.45 F
3481 3627 0.245539 GCCATGTGCAGCTCAACATT 59.754 50.000 7.86 0.0 40.77 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2574 2719 0.393077 ACCGGGAAGTGTGAAGACAG 59.607 55.000 6.32 0.0 30.74 3.51 R
2980 3125 0.805614 TGTGTTGTTGGTTGTCGTGG 59.194 50.000 0.00 0.0 0.00 4.94 R
3912 4076 1.285078 AGGGCAGAAAACATACCTCCC 59.715 52.381 0.00 0.0 0.00 4.30 R
5480 6523 0.463295 CGTGCTGAGGGAGATTGCAT 60.463 55.000 0.00 0.0 36.04 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 4.796231 CCCGACAAGACCGAGCCG 62.796 72.222 0.00 0.00 0.00 5.52
111 112 3.294493 GCGGCCTCTTGTTTGCCA 61.294 61.111 0.00 0.00 45.63 4.92
172 173 1.825281 GCAGAGGAGACAGCACCAGT 61.825 60.000 0.00 0.00 0.00 4.00
313 314 1.813513 AAGCTCCAATCAAGACACCG 58.186 50.000 0.00 0.00 0.00 4.94
453 456 2.112511 AGCCTCCCCCTCAGAAAAATTT 59.887 45.455 0.00 0.00 0.00 1.82
665 668 0.541764 AATTTGGTGCGATGGGTGGT 60.542 50.000 0.00 0.00 0.00 4.16
683 692 3.489513 GGTGGGGAATCGGGGAGG 61.490 72.222 0.00 0.00 0.00 4.30
684 693 2.366435 GTGGGGAATCGGGGAGGA 60.366 66.667 0.00 0.00 0.00 3.71
685 694 2.040884 TGGGGAATCGGGGAGGAG 60.041 66.667 0.00 0.00 0.00 3.69
686 695 2.285868 GGGGAATCGGGGAGGAGA 59.714 66.667 0.00 0.00 0.00 3.71
722 733 0.752658 ATGGAATGATGCCGACTCGA 59.247 50.000 0.00 0.00 0.00 4.04
820 839 1.152673 CCAATTCCTAGGCAGGCCC 60.153 63.158 2.96 0.00 42.30 5.80
821 840 1.152673 CAATTCCTAGGCAGGCCCC 60.153 63.158 2.96 0.00 42.30 5.80
836 855 4.653888 CCCGGGGTCCAAAACGCT 62.654 66.667 14.71 0.00 40.55 5.07
843 862 1.301479 GTCCAAAACGCTCCCTCGT 60.301 57.895 0.00 0.00 45.58 4.18
846 865 0.245539 CCAAAACGCTCCCTCGTCTA 59.754 55.000 0.00 0.00 42.46 2.59
908 931 4.736896 GTCTCTCGGCGGGCGTTT 62.737 66.667 23.46 0.00 0.00 3.60
1023 1046 1.346722 GTGAGTTCCTTTTCCTCCCGA 59.653 52.381 0.00 0.00 0.00 5.14
1025 1048 0.691332 AGTTCCTTTTCCTCCCGACC 59.309 55.000 0.00 0.00 0.00 4.79
1027 1050 0.475048 TTCCTTTTCCTCCCGACCCT 60.475 55.000 0.00 0.00 0.00 4.34
1028 1051 0.908180 TCCTTTTCCTCCCGACCCTC 60.908 60.000 0.00 0.00 0.00 4.30
1030 1053 0.984995 CTTTTCCTCCCGACCCTCTT 59.015 55.000 0.00 0.00 0.00 2.85
1147 1170 2.611224 CGAGGTAGTTGGGTTGTACACC 60.611 54.545 0.00 0.02 46.46 4.16
1168 1191 3.568007 CCGAGGAGTCTTAGATTGGAGAG 59.432 52.174 0.00 0.00 0.00 3.20
1203 1226 2.622436 GACTGTGAATCTTCCTTCCGG 58.378 52.381 0.00 0.00 0.00 5.14
1218 1241 2.396157 CCGGCACTAGGTTTTCCGC 61.396 63.158 0.00 0.00 46.35 5.54
1283 1306 7.859377 CAGCTTACAGCCATATAATTCAGTTTG 59.141 37.037 0.00 0.00 43.77 2.93
1393 1416 2.118076 CCATGGGGCTGTGTTGGT 59.882 61.111 2.85 0.00 0.00 3.67
1394 1417 1.382240 CCATGGGGCTGTGTTGGTA 59.618 57.895 2.85 0.00 0.00 3.25
1395 1418 0.680921 CCATGGGGCTGTGTTGGTAG 60.681 60.000 2.85 0.00 0.00 3.18
1396 1419 0.038166 CATGGGGCTGTGTTGGTAGT 59.962 55.000 0.00 0.00 0.00 2.73
1427 1450 5.074115 TCCCTACGACAAATTTGGAATTGT 58.926 37.500 21.74 12.90 42.18 2.71
1504 1535 8.632679 GGATGATGTTTAGCTGATTATTTTCCA 58.367 33.333 0.00 0.00 0.00 3.53
1624 1655 5.174395 AGATCTTCTGTGGAGATTTCGTTG 58.826 41.667 0.00 0.00 0.00 4.10
1801 1832 5.422012 ACTTTGGAAAGTTGGTGATTGAAGT 59.578 36.000 0.00 0.00 46.52 3.01
1857 1888 2.948979 TGCAGTTCATTCCTGTTTTCGT 59.051 40.909 0.00 0.00 32.41 3.85
1912 1944 8.713971 TGTCACCTCCATCTTACATTATGTATT 58.286 33.333 5.85 0.00 32.20 1.89
2061 2093 1.725665 GCACATGCAGCGTCATCAT 59.274 52.632 0.00 0.00 41.59 2.45
2064 2096 2.852143 GCACATGCAGCGTCATCATTAC 60.852 50.000 0.00 0.00 41.59 1.89
2089 2121 7.876582 ACTACACTGATGGTTAAAGTTTAGGTC 59.123 37.037 0.00 0.00 31.45 3.85
2095 2127 8.528044 TGATGGTTAAAGTTTAGGTCAAAGTT 57.472 30.769 0.00 0.00 40.74 2.66
2096 2128 9.629878 TGATGGTTAAAGTTTAGGTCAAAGTTA 57.370 29.630 0.00 0.00 38.56 2.24
2135 2167 7.402862 AGGCTAAAGTTGTAGGTTCAATATGT 58.597 34.615 0.00 0.00 0.00 2.29
2179 2219 8.851145 ACACTGATGGAGTACTATATACAACTG 58.149 37.037 0.00 0.00 31.73 3.16
2350 2495 7.425606 AGACTGTTCAATATGTTTTGGTGTTC 58.574 34.615 0.00 0.00 0.00 3.18
2366 2511 7.921786 TTGGTGTTCCATAAATCTCTAACTG 57.078 36.000 0.00 0.00 43.91 3.16
2374 2519 7.624549 TCCATAAATCTCTAACTGTCTTTGCT 58.375 34.615 0.00 0.00 0.00 3.91
2574 2719 7.702348 GTGTAGCATGAATGGGAAAAGAATAAC 59.298 37.037 0.00 0.00 0.00 1.89
2737 2882 4.500837 GTGCATGAGTCGAACATACTGTAG 59.499 45.833 0.00 0.00 0.00 2.74
2747 2892 4.346129 GAACATACTGTAGCTTTGCATGC 58.654 43.478 11.82 11.82 0.00 4.06
2788 2933 2.030981 GGGCATGCCAATTGTTTGTTTG 60.031 45.455 36.56 0.00 37.98 2.93
2809 2954 9.898152 TGTTTGACTTACATTATCATCCATGTA 57.102 29.630 0.00 0.00 35.24 2.29
2906 3051 8.230486 CGGAAATCAGGTATTGCTATGATAAAC 58.770 37.037 0.00 0.00 32.25 2.01
2980 3125 4.881273 TGCATGTATGTATGGTTGGACTTC 59.119 41.667 0.00 0.00 0.00 3.01
2991 3136 2.213280 TGGACTTCCACGACAACCA 58.787 52.632 0.00 0.00 42.01 3.67
2997 3142 1.740585 CTTCCACGACAACCAACAACA 59.259 47.619 0.00 0.00 0.00 3.33
3002 3147 2.088423 ACGACAACCAACAACACATGT 58.912 42.857 0.00 0.00 46.82 3.21
3057 3202 7.387119 TCTTAAGAGCGACTTATAACAGTGA 57.613 36.000 0.00 0.00 40.24 3.41
3126 3272 7.279981 CACTTCCGTATCCTTGTTGATCATTAA 59.720 37.037 0.00 0.00 0.00 1.40
3326 3472 3.005554 TCTATTGAGCTGTGCAAGAAGC 58.994 45.455 8.81 8.81 45.96 3.86
3403 3549 1.754226 GCTGAAGGCTGTAGAGCTACT 59.246 52.381 12.15 0.00 45.44 2.57
3480 3626 1.888018 GCCATGTGCAGCTCAACAT 59.112 52.632 0.32 5.18 40.77 2.71
3481 3627 0.245539 GCCATGTGCAGCTCAACATT 59.754 50.000 7.86 0.00 40.77 2.71
3492 3638 4.667668 GCAGCTCAACATTTTCTGTACTCG 60.668 45.833 0.00 0.00 36.98 4.18
3619 3769 9.225201 CTTGGACATTATTGTTTTGATACATCG 57.775 33.333 0.00 0.00 35.79 3.84
3628 3778 4.184629 GTTTTGATACATCGCTCTGACCT 58.815 43.478 0.00 0.00 0.00 3.85
3649 3799 1.271934 TGTTTCCATGCAAACATCCCG 59.728 47.619 10.94 0.00 40.57 5.14
3658 3808 2.890311 TGCAAACATCCCGTTTCATCTT 59.110 40.909 0.00 0.00 44.78 2.40
3760 3910 5.303078 CAGCTAACAGATGGACAGGTACTAT 59.697 44.000 0.00 0.00 36.02 2.12
3912 4076 4.512944 AGAACAGCTTGAACACATGTACAG 59.487 41.667 0.00 0.00 0.00 2.74
3978 4142 7.581213 AAATTTGGAAGGGAAATTTGGAAAC 57.419 32.000 0.00 0.00 40.08 2.78
3994 4158 3.776969 TGGAAACTAGAGAGATGGCATGT 59.223 43.478 3.81 0.00 0.00 3.21
4019 4183 5.244402 TGTTACTTGACTTCTTGGGTCGATA 59.756 40.000 0.00 0.00 36.58 2.92
4022 4186 6.732896 ACTTGACTTCTTGGGTCGATATAT 57.267 37.500 0.00 0.00 36.58 0.86
4028 4192 7.015195 TGACTTCTTGGGTCGATATATGATTGA 59.985 37.037 0.00 0.00 36.58 2.57
4049 4213 8.882415 ATTGAAACCAATGATTCATAAGCATC 57.118 30.769 0.00 0.00 36.31 3.91
4353 4559 8.230472 CTGGTCAGCCAATATATTTCTTCTTT 57.770 34.615 0.00 0.00 45.51 2.52
4354 4560 8.225603 TGGTCAGCCAATATATTTCTTCTTTC 57.774 34.615 0.00 0.00 42.83 2.62
4355 4561 8.055181 TGGTCAGCCAATATATTTCTTCTTTCT 58.945 33.333 0.00 0.00 42.83 2.52
4356 4562 8.907885 GGTCAGCCAATATATTTCTTCTTTCTT 58.092 33.333 0.00 0.00 34.09 2.52
4374 4580 9.841295 TTCTTTCTTGTTAACTACCTACACAAT 57.159 29.630 7.22 0.00 0.00 2.71
4382 4588 5.818678 AACTACCTACACAATGTTCTGGA 57.181 39.130 2.99 0.00 0.00 3.86
4396 4602 6.641169 ATGTTCTGGAACTCTTTCTTTTCC 57.359 37.500 13.54 0.00 41.67 3.13
4398 4604 6.187682 TGTTCTGGAACTCTTTCTTTTCCTT 58.812 36.000 13.54 0.00 41.67 3.36
4399 4605 6.318900 TGTTCTGGAACTCTTTCTTTTCCTTC 59.681 38.462 13.54 0.00 41.67 3.46
4460 4672 0.953471 GGCTGCGGTACATGAACACA 60.953 55.000 0.00 0.00 0.00 3.72
4505 4717 0.178873 TTGGGCTCTAGAACAGGGGT 60.179 55.000 0.00 0.00 0.00 4.95
4526 4738 3.442273 GTGTAGACACCTGAGAAGAGGAG 59.558 52.174 1.10 0.00 40.85 3.69
4547 4759 3.455469 GGCAGCCTCCATTGCACC 61.455 66.667 3.29 0.00 42.02 5.01
4588 4883 4.803098 AATTAATACTCCCTCCGATCCG 57.197 45.455 0.00 0.00 0.00 4.18
4642 4937 5.532557 AGTTCAACCTTAATTCAAAGCTGC 58.467 37.500 0.00 0.00 0.00 5.25
4651 4946 6.403636 CCTTAATTCAAAGCTGCGACACTTAT 60.404 38.462 0.00 0.00 0.00 1.73
4658 4953 3.458189 AGCTGCGACACTTATTATGGAC 58.542 45.455 0.00 0.00 0.00 4.02
4714 5013 2.463589 ATTTGCTCTCGGCCGGTCAA 62.464 55.000 27.83 19.77 40.92 3.18
4731 5030 2.066592 TCAACTGACCCCAATAACCCA 58.933 47.619 0.00 0.00 0.00 4.51
4743 5042 5.535030 CCCCAATAACCCAATAGCTAACTTC 59.465 44.000 0.00 0.00 0.00 3.01
4747 5046 3.538634 ACCCAATAGCTAACTTCGGAC 57.461 47.619 0.00 0.00 0.00 4.79
4805 5104 5.362556 TCTGTTATTTGTTCTTGCAGCTC 57.637 39.130 0.00 0.00 0.00 4.09
4808 5107 5.463286 TGTTATTTGTTCTTGCAGCTCATG 58.537 37.500 0.00 0.00 0.00 3.07
4879 5179 1.560923 CTGCGACTAACCCATCTTCG 58.439 55.000 0.00 0.00 0.00 3.79
4960 5260 4.389374 AGGCATTGTGTTTATATCCCTCG 58.611 43.478 0.00 0.00 0.00 4.63
5035 6068 3.261580 CCGTATGTGTTCAGCTTGATCA 58.738 45.455 0.00 0.00 0.00 2.92
5116 6151 6.380079 AATAGGACACCAGAATTCAGAAGT 57.620 37.500 8.44 1.71 0.00 3.01
5213 6253 9.092876 GAAGGTGAAGATAGAGTAGTTTTGATG 57.907 37.037 0.00 0.00 0.00 3.07
5282 6325 3.723681 AGATATGGCTTCATCTTGGGGAA 59.276 43.478 0.00 0.00 32.59 3.97
5308 6351 1.363807 GGCTTGTTTGCACCCTCAC 59.636 57.895 0.00 0.00 34.04 3.51
5309 6352 1.109323 GGCTTGTTTGCACCCTCACT 61.109 55.000 0.00 0.00 34.04 3.41
5310 6353 0.312102 GCTTGTTTGCACCCTCACTC 59.688 55.000 0.00 0.00 0.00 3.51
5311 6354 0.954452 CTTGTTTGCACCCTCACTCC 59.046 55.000 0.00 0.00 0.00 3.85
5312 6355 0.467290 TTGTTTGCACCCTCACTCCC 60.467 55.000 0.00 0.00 0.00 4.30
5313 6356 1.352622 TGTTTGCACCCTCACTCCCT 61.353 55.000 0.00 0.00 0.00 4.20
5314 6357 0.606673 GTTTGCACCCTCACTCCCTC 60.607 60.000 0.00 0.00 0.00 4.30
5315 6358 1.059584 TTTGCACCCTCACTCCCTCA 61.060 55.000 0.00 0.00 0.00 3.86
5321 6364 0.107312 CCCTCACTCCCTCAGCAATG 60.107 60.000 0.00 0.00 0.00 2.82
5359 6402 6.090358 TCCTCGACAAGACGATTTTATTTCAC 59.910 38.462 0.00 0.00 41.39 3.18
5365 6408 7.484975 ACAAGACGATTTTATTTCACAAACCA 58.515 30.769 0.00 0.00 0.00 3.67
5366 6409 7.976734 ACAAGACGATTTTATTTCACAAACCAA 59.023 29.630 0.00 0.00 0.00 3.67
5396 6439 4.233123 TCTTCTGACGTGTATTGTCGTT 57.767 40.909 0.00 0.00 40.39 3.85
5472 6515 2.241160 CCTGCATATGCCCTATTGCAA 58.759 47.619 24.54 0.00 45.84 4.08
5473 6516 2.829720 CCTGCATATGCCCTATTGCAAT 59.170 45.455 24.54 17.56 45.84 3.56
5474 6517 3.119245 CCTGCATATGCCCTATTGCAATC 60.119 47.826 24.54 1.67 45.84 2.67
5475 6518 3.498334 TGCATATGCCCTATTGCAATCA 58.502 40.909 24.54 8.16 45.84 2.57
5476 6519 4.090819 TGCATATGCCCTATTGCAATCAT 58.909 39.130 24.54 14.99 45.84 2.45
5477 6520 4.158949 TGCATATGCCCTATTGCAATCATC 59.841 41.667 24.54 4.69 45.84 2.92
5478 6521 4.732647 GCATATGCCCTATTGCAATCATCG 60.733 45.833 16.86 9.00 45.84 3.84
5479 6522 2.346766 TGCCCTATTGCAATCATCGT 57.653 45.000 16.86 0.00 38.56 3.73
5480 6523 3.483808 TGCCCTATTGCAATCATCGTA 57.516 42.857 16.86 0.00 38.56 3.43
5481 6524 4.019792 TGCCCTATTGCAATCATCGTAT 57.980 40.909 16.86 0.00 38.56 3.06
5482 6525 3.752747 TGCCCTATTGCAATCATCGTATG 59.247 43.478 16.86 0.00 38.56 2.39
5483 6526 3.426695 GCCCTATTGCAATCATCGTATGC 60.427 47.826 16.86 5.17 40.45 3.14
5514 6557 1.346395 AGCACGTGGTGTTGGATCTAA 59.654 47.619 21.19 0.00 35.75 2.10
5526 6569 6.228258 GTGTTGGATCTAAAGTAGTTCACCA 58.772 40.000 0.00 0.00 0.00 4.17
5566 6609 2.223572 CCGTACCGTCGGCTATTTAACT 60.224 50.000 12.28 0.00 43.96 2.24
5597 6640 1.267533 TGATGCCATTATCGCACATGC 59.732 47.619 0.00 0.00 39.49 4.06
5611 6654 4.693095 TCGCACATGCTCTGTTATGTAAAA 59.307 37.500 1.82 0.00 35.86 1.52
5630 6673 4.778213 AAAGTCAGATGCCTTGCCTATA 57.222 40.909 0.00 0.00 0.00 1.31
5646 6689 4.404394 TGCCTATAATTGTCGTCAGGAGAA 59.596 41.667 0.00 0.00 31.80 2.87
5653 6696 4.811555 TTGTCGTCAGGAGAAAATGTTG 57.188 40.909 0.00 0.00 0.00 3.33
5658 6703 3.985279 CGTCAGGAGAAAATGTTGTACGA 59.015 43.478 0.00 0.00 0.00 3.43
5773 6821 6.082338 ACTAGAATGACACGTAACTAACACG 58.918 40.000 0.00 0.00 44.80 4.49
5795 6843 2.076863 CCTTGCGAAAGGTAGAACAGG 58.923 52.381 14.76 0.00 35.22 4.00
5796 6844 1.464997 CTTGCGAAAGGTAGAACAGGC 59.535 52.381 0.00 0.00 0.00 4.85
5824 6885 3.605726 TCTATATGGAGGACGTTCCCA 57.394 47.619 6.52 6.52 37.19 4.37
5837 6898 5.191124 AGGACGTTCCCAAATAGAAATAGGT 59.809 40.000 0.00 0.00 37.19 3.08
5919 6984 6.412653 CGTTGTTGTCATGTTTTGGTTACTAC 59.587 38.462 0.00 0.00 0.00 2.73
5921 6986 7.254227 TGTTGTCATGTTTTGGTTACTACTC 57.746 36.000 0.00 0.00 0.00 2.59
5923 6988 7.225931 TGTTGTCATGTTTTGGTTACTACTCTC 59.774 37.037 0.00 0.00 0.00 3.20
5924 6989 7.062749 TGTCATGTTTTGGTTACTACTCTCT 57.937 36.000 0.00 0.00 0.00 3.10
5925 6990 7.152645 TGTCATGTTTTGGTTACTACTCTCTC 58.847 38.462 0.00 0.00 0.00 3.20
5926 6991 6.590677 GTCATGTTTTGGTTACTACTCTCTCC 59.409 42.308 0.00 0.00 0.00 3.71
5927 6992 5.130292 TGTTTTGGTTACTACTCTCTCCG 57.870 43.478 0.00 0.00 0.00 4.63
5928 6993 4.586001 TGTTTTGGTTACTACTCTCTCCGT 59.414 41.667 0.00 0.00 0.00 4.69
5929 6994 5.069516 TGTTTTGGTTACTACTCTCTCCGTT 59.930 40.000 0.00 0.00 0.00 4.44
5930 6995 5.796424 TTTGGTTACTACTCTCTCCGTTT 57.204 39.130 0.00 0.00 0.00 3.60
5931 6996 5.382618 TTGGTTACTACTCTCTCCGTTTC 57.617 43.478 0.00 0.00 0.00 2.78
5932 6997 4.660168 TGGTTACTACTCTCTCCGTTTCT 58.340 43.478 0.00 0.00 0.00 2.52
5933 6998 5.809001 TGGTTACTACTCTCTCCGTTTCTA 58.191 41.667 0.00 0.00 0.00 2.10
5935 7000 6.716628 TGGTTACTACTCTCTCCGTTTCTAAA 59.283 38.462 0.00 0.00 0.00 1.85
5941 7006 9.804758 ACTACTCTCTCCGTTTCTAAATATTTG 57.195 33.333 11.05 1.65 0.00 2.32
5942 7007 9.804758 CTACTCTCTCCGTTTCTAAATATTTGT 57.195 33.333 11.05 0.00 0.00 2.83
5944 7009 9.503399 ACTCTCTCCGTTTCTAAATATTTGTTT 57.497 29.630 11.05 0.00 0.00 2.83
5968 7033 7.630242 TTTTGAGAGATTTCAACAAGTGACT 57.370 32.000 0.00 0.00 36.84 3.41
5969 7034 8.731275 TTTTGAGAGATTTCAACAAGTGACTA 57.269 30.769 0.00 0.00 36.84 2.59
5970 7035 7.715265 TTGAGAGATTTCAACAAGTGACTAC 57.285 36.000 0.00 0.00 35.39 2.73
5971 7036 6.816136 TGAGAGATTTCAACAAGTGACTACA 58.184 36.000 0.00 0.00 35.39 2.74
5972 7037 7.445121 TGAGAGATTTCAACAAGTGACTACAT 58.555 34.615 0.00 0.00 35.39 2.29
5973 7038 8.585018 TGAGAGATTTCAACAAGTGACTACATA 58.415 33.333 0.00 0.00 35.39 2.29
5974 7039 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
5975 7040 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
5976 7041 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
5977 7042 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
5978 7043 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
5979 7044 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
5980 7045 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
5981 7046 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
5982 7047 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
5983 7048 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
5984 7049 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
6114 7181 0.807496 GCTGTGACCATTGAGGCTTC 59.193 55.000 0.00 0.00 43.14 3.86
6143 7210 1.285280 AGGCATGTGGGTGCTTAGTA 58.715 50.000 0.00 0.00 44.45 1.82
6147 7214 2.614057 GCATGTGGGTGCTTAGTATGTC 59.386 50.000 0.00 0.00 41.82 3.06
6187 7255 1.301874 CTAACGGCCGTGGAAACCA 60.302 57.895 34.95 10.08 0.00 3.67
6193 7261 1.739667 GCCGTGGAAACCAAAAGCT 59.260 52.632 0.00 0.00 34.18 3.74
6194 7262 0.597377 GCCGTGGAAACCAAAAGCTG 60.597 55.000 0.00 0.00 34.18 4.24
6226 7294 3.746492 GGTTCTTCGTAAGCACAGTCATT 59.254 43.478 0.00 0.00 37.18 2.57
6237 7305 9.632969 CGTAAGCACAGTCATTGTATTTTATAC 57.367 33.333 0.00 0.00 38.16 1.47
6240 7308 7.985476 AGCACAGTCATTGTATTTTATACACC 58.015 34.615 0.00 0.00 38.16 4.16
6241 7309 7.067008 AGCACAGTCATTGTATTTTATACACCC 59.933 37.037 0.00 0.00 38.16 4.61
6242 7310 7.067008 GCACAGTCATTGTATTTTATACACCCT 59.933 37.037 0.00 0.00 38.16 4.34
6243 7311 8.612619 CACAGTCATTGTATTTTATACACCCTC 58.387 37.037 0.00 0.00 38.16 4.30
6244 7312 7.773690 ACAGTCATTGTATTTTATACACCCTCC 59.226 37.037 0.00 0.00 38.56 4.30
6245 7313 6.990349 AGTCATTGTATTTTATACACCCTCCG 59.010 38.462 0.00 0.00 0.00 4.63
6246 7314 6.764560 GTCATTGTATTTTATACACCCTCCGT 59.235 38.462 0.00 0.00 0.00 4.69
6247 7315 6.987992 TCATTGTATTTTATACACCCTCCGTC 59.012 38.462 0.00 0.00 0.00 4.79
6248 7316 5.280654 TGTATTTTATACACCCTCCGTCC 57.719 43.478 0.00 0.00 0.00 4.79
6249 7317 3.851458 ATTTTATACACCCTCCGTCCC 57.149 47.619 0.00 0.00 0.00 4.46
6250 7318 2.250921 TTTATACACCCTCCGTCCCA 57.749 50.000 0.00 0.00 0.00 4.37
6251 7319 2.250921 TTATACACCCTCCGTCCCAA 57.749 50.000 0.00 0.00 0.00 4.12
6252 7320 2.250921 TATACACCCTCCGTCCCAAA 57.749 50.000 0.00 0.00 0.00 3.28
6253 7321 1.364269 ATACACCCTCCGTCCCAAAA 58.636 50.000 0.00 0.00 0.00 2.44
6254 7322 1.364269 TACACCCTCCGTCCCAAAAT 58.636 50.000 0.00 0.00 0.00 1.82
6255 7323 1.364269 ACACCCTCCGTCCCAAAATA 58.636 50.000 0.00 0.00 0.00 1.40
6256 7324 1.706305 ACACCCTCCGTCCCAAAATAA 59.294 47.619 0.00 0.00 0.00 1.40
6257 7325 2.290705 ACACCCTCCGTCCCAAAATAAG 60.291 50.000 0.00 0.00 0.00 1.73
6258 7326 1.990327 ACCCTCCGTCCCAAAATAAGT 59.010 47.619 0.00 0.00 0.00 2.24
6259 7327 2.290705 ACCCTCCGTCCCAAAATAAGTG 60.291 50.000 0.00 0.00 0.00 3.16
6260 7328 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
6261 7329 3.418047 CCTCCGTCCCAAAATAAGTGTT 58.582 45.455 0.00 0.00 0.00 3.32
6262 7330 3.824443 CCTCCGTCCCAAAATAAGTGTTT 59.176 43.478 0.00 0.00 0.00 2.83
6263 7331 4.279922 CCTCCGTCCCAAAATAAGTGTTTT 59.720 41.667 0.00 0.00 0.00 2.43
6264 7332 5.474189 CCTCCGTCCCAAAATAAGTGTTTTA 59.526 40.000 0.00 0.00 30.56 1.52
6265 7333 6.016108 CCTCCGTCCCAAAATAAGTGTTTTAA 60.016 38.462 0.00 0.00 30.56 1.52
6266 7334 6.737118 TCCGTCCCAAAATAAGTGTTTTAAC 58.263 36.000 0.00 0.00 30.56 2.01
6267 7335 6.320672 TCCGTCCCAAAATAAGTGTTTTAACA 59.679 34.615 0.00 0.00 36.38 2.41
6268 7336 7.014422 TCCGTCCCAAAATAAGTGTTTTAACAT 59.986 33.333 0.00 0.00 41.59 2.71
6269 7337 7.654116 CCGTCCCAAAATAAGTGTTTTAACATT 59.346 33.333 0.00 0.00 41.59 2.71
6270 7338 8.484008 CGTCCCAAAATAAGTGTTTTAACATTG 58.516 33.333 0.00 0.00 41.59 2.82
6271 7339 9.320352 GTCCCAAAATAAGTGTTTTAACATTGT 57.680 29.630 0.00 0.00 41.59 2.71
6307 7375 9.716531 AGTATAAAGTTGTACTAAAGTTGTCCC 57.283 33.333 0.00 0.00 34.01 4.46
6308 7376 9.716531 GTATAAAGTTGTACTAAAGTTGTCCCT 57.283 33.333 0.00 0.00 0.00 4.20
6313 7381 9.716531 AAGTTGTACTAAAGTTGTCCCTAATAC 57.283 33.333 0.00 0.00 0.00 1.89
6314 7382 8.873144 AGTTGTACTAAAGTTGTCCCTAATACA 58.127 33.333 0.00 0.00 0.00 2.29
6315 7383 9.492973 GTTGTACTAAAGTTGTCCCTAATACAA 57.507 33.333 0.00 0.00 34.56 2.41
6317 7385 9.715121 TGTACTAAAGTTGTCCCTAATACAAAG 57.285 33.333 0.00 0.00 38.50 2.77
6318 7386 9.716531 GTACTAAAGTTGTCCCTAATACAAAGT 57.283 33.333 0.00 0.00 38.50 2.66
6320 7388 9.063615 ACTAAAGTTGTCCCTAATACAAAGTTG 57.936 33.333 0.00 0.00 38.50 3.16
6321 7389 7.891498 AAAGTTGTCCCTAATACAAAGTTGT 57.109 32.000 1.75 1.75 44.86 3.32
6322 7390 8.983702 AAAGTTGTCCCTAATACAAAGTTGTA 57.016 30.769 6.37 6.37 46.55 2.41
6336 7404 7.648039 ACAAAGTTGTATTAAAGTTGGGACA 57.352 32.000 0.00 0.00 40.16 4.02
6337 7405 7.485810 ACAAAGTTGTATTAAAGTTGGGACAC 58.514 34.615 0.00 0.00 40.16 3.67
6338 7406 7.340999 ACAAAGTTGTATTAAAGTTGGGACACT 59.659 33.333 0.00 0.00 40.16 3.55
6339 7407 7.891498 AAGTTGTATTAAAGTTGGGACACTT 57.109 32.000 0.00 0.00 39.29 3.16
6340 7408 8.983702 AAGTTGTATTAAAGTTGGGACACTTA 57.016 30.769 0.00 0.00 39.29 2.24
6341 7409 8.983702 AGTTGTATTAAAGTTGGGACACTTAA 57.016 30.769 0.00 0.00 39.29 1.85
6342 7410 9.063615 AGTTGTATTAAAGTTGGGACACTTAAG 57.936 33.333 0.00 0.00 39.29 1.85
6343 7411 7.989416 TGTATTAAAGTTGGGACACTTAAGG 57.011 36.000 7.53 0.00 39.29 2.69
6344 7412 6.943718 TGTATTAAAGTTGGGACACTTAAGGG 59.056 38.462 2.27 2.27 39.29 3.95
6345 7413 5.649970 TTAAAGTTGGGACACTTAAGGGA 57.350 39.130 12.83 0.00 39.29 4.20
6346 7414 3.790089 AAGTTGGGACACTTAAGGGAG 57.210 47.619 12.83 0.79 39.29 4.30
6361 7429 9.640963 CACTTAAGGGAGTATATGTATAAGCAC 57.359 37.037 7.53 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 0.456995 CGCTCGAGGTGAAGAAGTCC 60.457 60.000 15.58 0.00 0.00 3.85
79 80 1.587054 CCGCTCGAGGTGAAGAAGT 59.413 57.895 15.58 0.00 0.00 3.01
111 112 0.110486 AAGACGCCCCTTGTCATTGT 59.890 50.000 0.00 0.00 38.83 2.71
313 314 0.749649 TTTTGTGTGACCACCATGGC 59.250 50.000 13.04 0.00 42.67 4.40
334 335 5.981915 GGATTATGTTCCGTAGACCTGTTAC 59.018 44.000 0.00 0.00 0.00 2.50
389 392 7.824779 GGAAGTAAATAAATAGGGATGATCGCT 59.175 37.037 16.41 16.41 42.60 4.93
665 668 2.690881 CTCCCCGATTCCCCACCA 60.691 66.667 0.00 0.00 0.00 4.17
683 692 5.937540 TCCATCGTCATATTCTCTCTCTCTC 59.062 44.000 0.00 0.00 0.00 3.20
684 693 5.875224 TCCATCGTCATATTCTCTCTCTCT 58.125 41.667 0.00 0.00 0.00 3.10
685 694 6.567687 TTCCATCGTCATATTCTCTCTCTC 57.432 41.667 0.00 0.00 0.00 3.20
686 695 6.718912 TCATTCCATCGTCATATTCTCTCTCT 59.281 38.462 0.00 0.00 0.00 3.10
820 839 3.053896 GAGCGTTTTGGACCCCGG 61.054 66.667 0.00 0.00 0.00 5.73
821 840 3.053896 GGAGCGTTTTGGACCCCG 61.054 66.667 0.00 0.00 0.00 5.73
836 855 3.383825 GGTTTGCTTCTATAGACGAGGGA 59.616 47.826 10.29 0.00 0.00 4.20
843 862 4.082081 TCGGTTTCGGTTTGCTTCTATAGA 60.082 41.667 0.00 0.00 36.95 1.98
846 865 2.740447 GTCGGTTTCGGTTTGCTTCTAT 59.260 45.455 0.00 0.00 36.95 1.98
989 1012 3.433598 GGAACTCACCATTGCAGGCTATA 60.434 47.826 0.00 0.00 0.00 1.31
999 1022 3.500471 GGGAGGAAAAGGAACTCACCATT 60.500 47.826 0.00 0.00 38.49 3.16
1023 1046 0.037447 GCAAGGCTGAAGAAGAGGGT 59.963 55.000 0.00 0.00 0.00 4.34
1025 1048 1.642952 GCGCAAGGCTGAAGAAGAGG 61.643 60.000 0.30 0.00 39.11 3.69
1027 1050 1.071299 TGCGCAAGGCTGAAGAAGA 59.929 52.632 8.16 0.00 44.05 2.87
1028 1051 1.208614 GTGCGCAAGGCTGAAGAAG 59.791 57.895 14.00 0.00 44.05 2.85
1030 1053 2.669569 GGTGCGCAAGGCTGAAGA 60.670 61.111 14.00 0.00 44.05 2.87
1079 1102 3.470888 AGCCGATTCAGGGACCCG 61.471 66.667 4.40 0.00 0.00 5.28
1086 1109 2.005451 CTTCCAGTTCAGCCGATTCAG 58.995 52.381 0.00 0.00 0.00 3.02
1147 1170 3.568007 CCTCTCCAATCTAAGACTCCTCG 59.432 52.174 0.00 0.00 0.00 4.63
1168 1191 1.067354 ACAGTCCGAAATGTACCGACC 60.067 52.381 0.00 0.00 0.00 4.79
1203 1226 2.608090 GTGATAGCGGAAAACCTAGTGC 59.392 50.000 0.00 0.00 0.00 4.40
1218 1241 3.814615 ATGGCCGGCAGCGTGATAG 62.815 63.158 30.85 0.00 45.17 2.08
1362 1385 0.459489 CCATGGCATTGTAAACCCCG 59.541 55.000 0.00 0.00 0.00 5.73
1393 1416 7.886629 ATTTGTCGTAGGGAATGTAGTACTA 57.113 36.000 0.00 0.00 0.00 1.82
1394 1417 6.786967 ATTTGTCGTAGGGAATGTAGTACT 57.213 37.500 0.00 0.00 0.00 2.73
1395 1418 7.201582 CCAAATTTGTCGTAGGGAATGTAGTAC 60.202 40.741 16.73 0.00 0.00 2.73
1396 1419 6.819649 CCAAATTTGTCGTAGGGAATGTAGTA 59.180 38.462 16.73 0.00 0.00 1.82
1427 1450 3.753272 GCAGATACAAGAAAAGGTCAGCA 59.247 43.478 0.00 0.00 0.00 4.41
1504 1535 7.180051 CCCCTCTTCTTAGACTAAGCATGATAT 59.820 40.741 16.17 0.00 35.76 1.63
1509 1540 3.389656 GCCCCTCTTCTTAGACTAAGCAT 59.610 47.826 16.17 0.00 35.76 3.79
1624 1655 9.504708 TCTTGCTATACTGAGGTAGAATAGTAC 57.495 37.037 0.00 0.00 0.00 2.73
1681 1712 2.949447 ACCCATGAGTTTGTTGCTTCT 58.051 42.857 0.00 0.00 0.00 2.85
1801 1832 4.825422 GCATCTGGCATATCACTAGCTTA 58.175 43.478 0.00 0.00 43.97 3.09
1877 1908 7.552687 TGTAAGATGGAGGTGACAATTTGATAC 59.447 37.037 2.79 1.75 0.00 2.24
1912 1944 8.463930 AACAGATACTGATTTCTTGTGGAAAA 57.536 30.769 5.76 0.00 39.72 2.29
2013 2045 9.465199 TTGAACCTACAACTTTAACCTAAACTT 57.535 29.630 0.00 0.00 0.00 2.66
2061 2093 9.715121 CCTAAACTTTAACCATCAGTGTAGTAA 57.285 33.333 0.00 0.00 29.38 2.24
2064 2096 7.876068 TGACCTAAACTTTAACCATCAGTGTAG 59.124 37.037 0.00 0.00 30.72 2.74
2100 2132 9.631257 ACCTACAACTTTAGCCTAAACTTTTAA 57.369 29.630 0.00 0.00 0.00 1.52
2101 2133 9.631257 AACCTACAACTTTAGCCTAAACTTTTA 57.369 29.630 0.00 0.00 0.00 1.52
2102 2134 8.529424 AACCTACAACTTTAGCCTAAACTTTT 57.471 30.769 0.00 0.00 0.00 2.27
2135 2167 9.981114 CATCAGTGTATATTGAACCTACATGTA 57.019 33.333 5.25 5.25 0.00 2.29
2179 2219 5.817296 TCAAAGCATGATGACACTGGTATAC 59.183 40.000 0.00 0.00 31.50 1.47
2195 2235 6.808829 TGAAAACAGAAGTTCATCAAAGCAT 58.191 32.000 5.50 0.00 36.84 3.79
2313 2458 3.973657 TGAACAGTCTACACGGAGAAAC 58.026 45.455 0.00 0.00 0.00 2.78
2320 2465 7.015289 CCAAAACATATTGAACAGTCTACACG 58.985 38.462 0.00 0.00 31.84 4.49
2350 2495 7.768120 AGAGCAAAGACAGTTAGAGATTTATGG 59.232 37.037 0.00 0.00 0.00 2.74
2574 2719 0.393077 ACCGGGAAGTGTGAAGACAG 59.607 55.000 6.32 0.00 30.74 3.51
2737 2882 3.545911 GCACACAGCATGCAAAGC 58.454 55.556 21.98 12.31 42.53 3.51
2788 2933 8.589338 AGAGGTACATGGATGATAATGTAAGTC 58.411 37.037 0.00 3.68 40.10 3.01
2809 2954 7.842887 AGTTCAGAAACTAGAAACTAGAGGT 57.157 36.000 11.94 0.00 43.98 3.85
2906 3051 5.617308 GCAATGAAAGAAGAGCAGAGTTCAG 60.617 44.000 0.00 0.00 0.00 3.02
2980 3125 0.805614 TGTGTTGTTGGTTGTCGTGG 59.194 50.000 0.00 0.00 0.00 4.94
2997 3142 7.833682 TGATGGACTTAATTGGTATCAACATGT 59.166 33.333 0.00 0.00 35.48 3.21
3002 3147 6.828273 CAGGTGATGGACTTAATTGGTATCAA 59.172 38.462 0.00 0.00 37.28 2.57
3009 3154 7.607991 AGAAGTTACAGGTGATGGACTTAATTG 59.392 37.037 0.00 0.00 38.64 2.32
3086 3231 3.511934 ACGGAAGTGCACTAGAAAGAGAT 59.488 43.478 22.01 0.00 46.97 2.75
3105 3251 7.930217 ACATTTAATGATCAACAAGGATACGG 58.070 34.615 12.28 0.00 46.39 4.02
3194 3340 5.745312 TTGAAAGATCAGACTCCAGCTTA 57.255 39.130 0.00 0.00 36.78 3.09
3292 3438 5.070180 CAGCTCAATAGAGGAGATGGAGAAA 59.930 44.000 0.00 0.00 43.23 2.52
3326 3472 7.930325 AGGAATGTACATGAGTTGATCTACATG 59.070 37.037 9.63 13.04 43.56 3.21
3471 3617 4.632153 ACGAGTACAGAAAATGTTGAGCT 58.368 39.130 0.00 0.00 39.96 4.09
3480 3626 5.909477 TCTTCCTGAAACGAGTACAGAAAA 58.091 37.500 0.00 5.58 34.07 2.29
3481 3627 5.524971 TCTTCCTGAAACGAGTACAGAAA 57.475 39.130 0.00 0.00 34.07 2.52
3492 3638 2.744741 GGCAGCTAGTTCTTCCTGAAAC 59.255 50.000 0.00 0.00 36.30 2.78
3628 3778 2.288702 CGGGATGTTTGCATGGAAACAA 60.289 45.455 38.00 25.56 46.22 2.83
3649 3799 9.899226 AATTTACTGCAAGAACTAAGATGAAAC 57.101 29.630 0.00 0.00 37.43 2.78
3760 3910 8.177119 AGCATAAAGTTGACAAGTGGAATTAA 57.823 30.769 0.00 0.00 0.00 1.40
3912 4076 1.285078 AGGGCAGAAAACATACCTCCC 59.715 52.381 0.00 0.00 0.00 4.30
3953 4117 7.838696 AGTTTCCAAATTTCCCTTCCAAATTTT 59.161 29.630 1.29 0.00 40.07 1.82
3954 4118 7.353525 AGTTTCCAAATTTCCCTTCCAAATTT 58.646 30.769 0.00 0.00 41.86 1.82
3955 4119 6.910191 AGTTTCCAAATTTCCCTTCCAAATT 58.090 32.000 0.00 0.00 35.40 1.82
3956 4120 6.514012 AGTTTCCAAATTTCCCTTCCAAAT 57.486 33.333 0.00 0.00 0.00 2.32
3957 4121 5.966853 AGTTTCCAAATTTCCCTTCCAAA 57.033 34.783 0.00 0.00 0.00 3.28
3958 4122 6.377912 TCTAGTTTCCAAATTTCCCTTCCAA 58.622 36.000 0.00 0.00 0.00 3.53
3959 4123 5.959512 TCTAGTTTCCAAATTTCCCTTCCA 58.040 37.500 0.00 0.00 0.00 3.53
3960 4124 6.246163 TCTCTAGTTTCCAAATTTCCCTTCC 58.754 40.000 0.00 0.00 0.00 3.46
3961 4125 7.168905 TCTCTCTAGTTTCCAAATTTCCCTTC 58.831 38.462 0.00 0.00 0.00 3.46
3962 4126 7.091533 TCTCTCTAGTTTCCAAATTTCCCTT 57.908 36.000 0.00 0.00 0.00 3.95
3963 4127 6.704056 TCTCTCTAGTTTCCAAATTTCCCT 57.296 37.500 0.00 0.00 0.00 4.20
3964 4128 6.319911 CCATCTCTCTAGTTTCCAAATTTCCC 59.680 42.308 0.00 0.00 0.00 3.97
3965 4129 6.183360 GCCATCTCTCTAGTTTCCAAATTTCC 60.183 42.308 0.00 0.00 0.00 3.13
3978 4142 5.911752 AGTAACAACATGCCATCTCTCTAG 58.088 41.667 0.00 0.00 0.00 2.43
3994 4158 4.124238 CGACCCAAGAAGTCAAGTAACAA 58.876 43.478 0.00 0.00 33.70 2.83
4022 4186 7.838884 TGCTTATGAATCATTGGTTTCAATCA 58.161 30.769 0.00 0.00 41.29 2.57
4028 4192 5.068198 AGCGATGCTTATGAATCATTGGTTT 59.932 36.000 0.00 0.00 33.89 3.27
4049 4213 4.952262 TGATTCTTCCAATCTTCAAGCG 57.048 40.909 0.00 0.00 0.00 4.68
4058 4222 7.823745 ACTACAAACTGTTGATTCTTCCAAT 57.176 32.000 0.00 0.00 38.20 3.16
4179 4385 9.962809 ATTTATGGTTTCATCCATTTGAATGTT 57.037 25.926 3.55 0.00 44.75 2.71
4210 4416 4.579869 TGAGGCAGGTGATCTTAAGTTTC 58.420 43.478 1.63 2.13 0.00 2.78
4262 4468 4.701956 AAGGTTTACTGTACATGCATGC 57.298 40.909 26.53 11.82 0.00 4.06
4353 4559 8.426489 AGAACATTGTGTAGGTAGTTAACAAGA 58.574 33.333 8.61 0.00 34.50 3.02
4354 4560 8.495949 CAGAACATTGTGTAGGTAGTTAACAAG 58.504 37.037 8.61 0.00 34.50 3.16
4355 4561 7.442969 CCAGAACATTGTGTAGGTAGTTAACAA 59.557 37.037 8.61 0.00 35.41 2.83
4356 4562 6.932400 CCAGAACATTGTGTAGGTAGTTAACA 59.068 38.462 8.61 0.00 0.00 2.41
4374 4580 5.755849 AGGAAAAGAAAGAGTTCCAGAACA 58.244 37.500 12.76 0.00 42.81 3.18
4396 4602 9.874215 CATCATGTTACAGCAATATTACTGAAG 57.126 33.333 20.33 5.47 37.35 3.02
4398 4604 7.992608 ACCATCATGTTACAGCAATATTACTGA 59.007 33.333 20.33 3.79 37.35 3.41
4399 4605 8.158169 ACCATCATGTTACAGCAATATTACTG 57.842 34.615 13.22 13.22 39.86 2.74
4409 4615 4.576053 TCAGCATAACCATCATGTTACAGC 59.424 41.667 0.00 0.00 36.28 4.40
4505 4717 3.691575 CTCCTCTTCTCAGGTGTCTACA 58.308 50.000 0.00 0.00 34.76 2.74
4547 4759 4.696899 TTAGTAGATGACAGTGACACCG 57.303 45.455 0.84 0.00 0.00 4.94
4588 4883 2.111756 CAAAACTGCGACACTTGCTTC 58.888 47.619 0.00 0.00 0.00 3.86
4642 4937 3.552273 CCTCCGGTCCATAATAAGTGTCG 60.552 52.174 0.00 0.00 0.00 4.35
4651 4946 3.339713 AATACTCCCTCCGGTCCATAA 57.660 47.619 0.00 0.00 0.00 1.90
4658 4953 4.831155 TGTGATACTTAATACTCCCTCCGG 59.169 45.833 0.00 0.00 0.00 5.14
4714 5013 3.372675 GCTATTGGGTTATTGGGGTCAGT 60.373 47.826 0.00 0.00 0.00 3.41
4731 5030 2.766828 AGCTGGTCCGAAGTTAGCTATT 59.233 45.455 0.00 0.00 42.45 1.73
4743 5042 5.303747 CTCATAGTTATAGAGCTGGTCCG 57.696 47.826 2.76 0.00 0.00 4.79
4879 5179 2.350522 CACAAGCCACATCTAGTCCAC 58.649 52.381 0.00 0.00 0.00 4.02
4960 5260 1.247567 TTAAGTGGGCAAGCAGCTTC 58.752 50.000 4.07 0.23 44.79 3.86
5116 6151 5.514500 AACTAGTAAAAGGATGGCAGGAA 57.486 39.130 0.00 0.00 0.00 3.36
5213 6253 5.740569 CGTGTGACATCAATCAAATCAATCC 59.259 40.000 0.00 0.00 0.00 3.01
5264 6304 2.925966 TTTCCCCAAGATGAAGCCAT 57.074 45.000 0.00 0.00 35.29 4.40
5308 6351 3.136009 TGATATGCATTGCTGAGGGAG 57.864 47.619 3.54 0.00 0.00 4.30
5309 6352 3.073356 TGATGATATGCATTGCTGAGGGA 59.927 43.478 3.54 0.00 37.34 4.20
5310 6353 3.418047 TGATGATATGCATTGCTGAGGG 58.582 45.455 3.54 0.00 37.34 4.30
5311 6354 4.459337 ACATGATGATATGCATTGCTGAGG 59.541 41.667 3.54 0.00 37.34 3.86
5312 6355 5.392057 GGACATGATGATATGCATTGCTGAG 60.392 44.000 3.54 0.00 37.34 3.35
5313 6356 4.457949 GGACATGATGATATGCATTGCTGA 59.542 41.667 3.54 0.00 37.34 4.26
5314 6357 4.459337 AGGACATGATGATATGCATTGCTG 59.541 41.667 3.54 0.00 37.34 4.41
5315 6358 4.663334 AGGACATGATGATATGCATTGCT 58.337 39.130 3.54 0.00 37.34 3.91
5321 6364 3.917988 TGTCGAGGACATGATGATATGC 58.082 45.455 0.00 0.00 37.67 3.14
5365 6408 4.130118 ACACGTCAGAAGAAAGCAGAATT 58.870 39.130 0.00 0.00 0.00 2.17
5366 6409 3.733337 ACACGTCAGAAGAAAGCAGAAT 58.267 40.909 0.00 0.00 0.00 2.40
5396 6439 5.575157 TCAGTTATGCCCACCTGAAATTTA 58.425 37.500 0.00 0.00 31.36 1.40
5472 6515 3.580022 TGAGGGAGATTGCATACGATGAT 59.420 43.478 0.00 0.00 0.00 2.45
5473 6516 2.965147 TGAGGGAGATTGCATACGATGA 59.035 45.455 0.00 0.00 0.00 2.92
5474 6517 3.324117 CTGAGGGAGATTGCATACGATG 58.676 50.000 0.00 0.00 0.00 3.84
5475 6518 2.289320 GCTGAGGGAGATTGCATACGAT 60.289 50.000 0.00 0.00 0.00 3.73
5476 6519 1.069204 GCTGAGGGAGATTGCATACGA 59.931 52.381 0.00 0.00 0.00 3.43
5477 6520 1.202568 TGCTGAGGGAGATTGCATACG 60.203 52.381 0.00 0.00 0.00 3.06
5478 6521 2.216898 GTGCTGAGGGAGATTGCATAC 58.783 52.381 0.00 0.00 36.04 2.39
5479 6522 1.202568 CGTGCTGAGGGAGATTGCATA 60.203 52.381 0.00 0.00 36.04 3.14
5480 6523 0.463295 CGTGCTGAGGGAGATTGCAT 60.463 55.000 0.00 0.00 36.04 3.96
5481 6524 1.078918 CGTGCTGAGGGAGATTGCA 60.079 57.895 0.00 0.00 0.00 4.08
5482 6525 1.078848 ACGTGCTGAGGGAGATTGC 60.079 57.895 0.00 0.00 0.00 3.56
5483 6526 0.742281 CCACGTGCTGAGGGAGATTG 60.742 60.000 10.91 0.00 0.00 2.67
5484 6527 1.194781 ACCACGTGCTGAGGGAGATT 61.195 55.000 10.91 0.00 31.66 2.40
5485 6528 1.610673 ACCACGTGCTGAGGGAGAT 60.611 57.895 10.91 0.00 31.66 2.75
5597 6640 6.820656 AGGCATCTGACTTTTACATAACAGAG 59.179 38.462 0.00 0.00 37.70 3.35
5611 6654 4.989875 ATTATAGGCAAGGCATCTGACT 57.010 40.909 0.00 0.00 32.33 3.41
5630 6673 5.299279 ACAACATTTTCTCCTGACGACAATT 59.701 36.000 0.00 0.00 0.00 2.32
5646 6689 5.049267 AGCACCGTTTTATCGTACAACATTT 60.049 36.000 0.00 0.00 0.00 2.32
5653 6696 4.858692 TCTTGTAGCACCGTTTTATCGTAC 59.141 41.667 0.00 0.00 0.00 3.67
5658 6703 7.391148 AATTCATCTTGTAGCACCGTTTTAT 57.609 32.000 0.00 0.00 0.00 1.40
5793 6841 5.961421 GTCCTCCATATAGAATAAGAGGCCT 59.039 44.000 3.86 3.86 40.60 5.19
5795 6843 5.419471 ACGTCCTCCATATAGAATAAGAGGC 59.581 44.000 0.00 0.00 40.60 4.70
5796 6844 7.363094 GGAACGTCCTCCATATAGAATAAGAGG 60.363 44.444 1.23 0.00 41.88 3.69
5837 6898 7.106239 GGTGTGAAAGAATATTGGAGAGAAGA 58.894 38.462 0.00 0.00 0.00 2.87
5943 7008 8.055279 AGTCACTTGTTGAAATCTCTCAAAAA 57.945 30.769 0.00 0.00 37.08 1.94
5944 7009 7.630242 AGTCACTTGTTGAAATCTCTCAAAA 57.370 32.000 0.00 0.00 37.08 2.44
5945 7010 7.768582 TGTAGTCACTTGTTGAAATCTCTCAAA 59.231 33.333 0.00 0.00 37.08 2.69
5946 7011 7.272244 TGTAGTCACTTGTTGAAATCTCTCAA 58.728 34.615 0.00 0.00 35.39 3.02
5947 7012 6.816136 TGTAGTCACTTGTTGAAATCTCTCA 58.184 36.000 0.00 0.00 35.39 3.27
5948 7013 7.897575 ATGTAGTCACTTGTTGAAATCTCTC 57.102 36.000 0.00 0.00 35.39 3.20
5949 7014 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
5950 7015 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
5951 7016 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
5952 7017 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
5953 7018 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
5954 7019 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
5955 7020 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
5956 7021 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
5957 7022 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
5958 7023 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
5959 7024 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
5960 7025 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
5961 7026 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
5962 7027 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
5963 7028 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
5964 7029 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
5965 7030 5.109903 ACTCATTTTGCTCCGTATGTAGTC 58.890 41.667 0.00 0.00 0.00 2.59
5966 7031 5.086104 ACTCATTTTGCTCCGTATGTAGT 57.914 39.130 0.00 0.00 0.00 2.73
5967 7032 6.273825 ACTACTCATTTTGCTCCGTATGTAG 58.726 40.000 0.00 0.00 0.00 2.74
5968 7033 6.216801 ACTACTCATTTTGCTCCGTATGTA 57.783 37.500 0.00 0.00 0.00 2.29
5969 7034 5.086104 ACTACTCATTTTGCTCCGTATGT 57.914 39.130 0.00 0.00 0.00 2.29
5970 7035 7.715265 AATACTACTCATTTTGCTCCGTATG 57.285 36.000 0.00 0.00 0.00 2.39
5971 7036 8.732746 AAAATACTACTCATTTTGCTCCGTAT 57.267 30.769 0.00 0.00 34.97 3.06
5972 7037 9.826574 ATAAAATACTACTCATTTTGCTCCGTA 57.173 29.630 3.86 0.00 36.51 4.02
5973 7038 8.732746 ATAAAATACTACTCATTTTGCTCCGT 57.267 30.769 3.86 0.00 36.51 4.69
6019 7085 8.997621 AGCGTCAAAAACACTCTTATATTAGA 57.002 30.769 0.00 0.00 0.00 2.10
6020 7086 8.050750 CGAGCGTCAAAAACACTCTTATATTAG 58.949 37.037 0.00 0.00 35.33 1.73
6021 7087 7.756272 TCGAGCGTCAAAAACACTCTTATATTA 59.244 33.333 0.00 0.00 35.33 0.98
6022 7088 6.588756 TCGAGCGTCAAAAACACTCTTATATT 59.411 34.615 0.00 0.00 35.33 1.28
6023 7089 6.097356 TCGAGCGTCAAAAACACTCTTATAT 58.903 36.000 0.00 0.00 35.33 0.86
6024 7090 5.463286 TCGAGCGTCAAAAACACTCTTATA 58.537 37.500 0.00 0.00 35.33 0.98
6025 7091 4.304110 TCGAGCGTCAAAAACACTCTTAT 58.696 39.130 0.00 0.00 35.33 1.73
6026 7092 3.708890 TCGAGCGTCAAAAACACTCTTA 58.291 40.909 0.00 0.00 35.33 2.10
6029 7095 1.192534 CCTCGAGCGTCAAAAACACTC 59.807 52.381 6.99 0.00 34.35 3.51
6030 7096 1.217882 CCTCGAGCGTCAAAAACACT 58.782 50.000 6.99 0.00 0.00 3.55
6031 7097 0.234884 CCCTCGAGCGTCAAAAACAC 59.765 55.000 6.99 0.00 0.00 3.32
6032 7098 0.105224 TCCCTCGAGCGTCAAAAACA 59.895 50.000 6.99 0.00 0.00 2.83
6033 7099 0.790814 CTCCCTCGAGCGTCAAAAAC 59.209 55.000 6.99 0.00 0.00 2.43
6034 7100 0.391597 ACTCCCTCGAGCGTCAAAAA 59.608 50.000 6.99 0.00 40.03 1.94
6035 7101 1.068055 GTACTCCCTCGAGCGTCAAAA 60.068 52.381 6.99 0.00 40.03 2.44
6036 7102 0.524862 GTACTCCCTCGAGCGTCAAA 59.475 55.000 6.99 0.00 40.03 2.69
6037 7103 1.310933 GGTACTCCCTCGAGCGTCAA 61.311 60.000 6.99 0.00 40.03 3.18
6038 7104 1.748122 GGTACTCCCTCGAGCGTCA 60.748 63.158 6.99 0.00 40.03 4.35
6039 7105 0.179062 TAGGTACTCCCTCGAGCGTC 60.179 60.000 6.99 0.00 44.81 5.19
6040 7106 0.463474 GTAGGTACTCCCTCGAGCGT 60.463 60.000 6.99 6.21 44.81 5.07
6041 7107 0.179051 AGTAGGTACTCCCTCGAGCG 60.179 60.000 6.99 0.00 44.81 5.03
6042 7108 2.368221 TCTAGTAGGTACTCCCTCGAGC 59.632 54.545 6.99 0.00 44.81 5.03
6043 7109 4.686191 TTCTAGTAGGTACTCCCTCGAG 57.314 50.000 5.13 5.13 44.81 4.04
6044 7110 5.190528 TCTTTTCTAGTAGGTACTCCCTCGA 59.809 44.000 0.00 0.00 44.81 4.04
6045 7111 5.435291 TCTTTTCTAGTAGGTACTCCCTCG 58.565 45.833 0.00 0.00 44.81 4.63
6080 7146 4.220602 GGTCACAGCAATGGATACCTTTTT 59.779 41.667 0.00 0.00 0.00 1.94
6081 7147 3.763897 GGTCACAGCAATGGATACCTTTT 59.236 43.478 0.00 0.00 0.00 2.27
6082 7148 3.245229 TGGTCACAGCAATGGATACCTTT 60.245 43.478 0.00 0.00 0.00 3.11
6083 7149 2.308570 TGGTCACAGCAATGGATACCTT 59.691 45.455 0.00 0.00 0.00 3.50
6084 7150 1.915489 TGGTCACAGCAATGGATACCT 59.085 47.619 0.00 0.00 0.00 3.08
6085 7151 2.418368 TGGTCACAGCAATGGATACC 57.582 50.000 0.00 0.00 0.00 2.73
6086 7152 3.947196 TCAATGGTCACAGCAATGGATAC 59.053 43.478 0.00 0.00 28.26 2.24
6129 7196 1.897133 ACGACATACTAAGCACCCACA 59.103 47.619 0.00 0.00 0.00 4.17
6133 7200 2.348666 CAGCAACGACATACTAAGCACC 59.651 50.000 0.00 0.00 0.00 5.01
6135 7202 3.313012 ACAGCAACGACATACTAAGCA 57.687 42.857 0.00 0.00 0.00 3.91
6143 7210 2.494059 AGCTTACAACAGCAACGACAT 58.506 42.857 0.00 0.00 42.84 3.06
6147 7214 2.742053 ACCATAGCTTACAACAGCAACG 59.258 45.455 0.00 0.00 42.84 4.10
6187 7255 3.769300 AGAACCACACTTTTCCAGCTTTT 59.231 39.130 0.00 0.00 0.00 2.27
6193 7261 2.993937 ACGAAGAACCACACTTTTCCA 58.006 42.857 0.00 0.00 0.00 3.53
6194 7262 4.554134 GCTTACGAAGAACCACACTTTTCC 60.554 45.833 0.00 0.00 0.00 3.13
6195 7263 4.034742 TGCTTACGAAGAACCACACTTTTC 59.965 41.667 0.00 0.00 0.00 2.29
6196 7264 3.942748 TGCTTACGAAGAACCACACTTTT 59.057 39.130 0.00 0.00 0.00 2.27
6197 7265 3.311596 GTGCTTACGAAGAACCACACTTT 59.688 43.478 0.00 0.00 30.24 2.66
6198 7266 2.870411 GTGCTTACGAAGAACCACACTT 59.130 45.455 0.00 0.00 30.24 3.16
6199 7267 2.159014 TGTGCTTACGAAGAACCACACT 60.159 45.455 0.00 0.00 36.11 3.55
6200 7268 2.206750 TGTGCTTACGAAGAACCACAC 58.793 47.619 0.00 0.00 36.11 3.82
6201 7269 2.159014 ACTGTGCTTACGAAGAACCACA 60.159 45.455 0.00 0.00 36.11 4.17
6202 7270 2.475487 GACTGTGCTTACGAAGAACCAC 59.525 50.000 0.00 0.00 36.11 4.16
6226 7294 4.101430 GGGACGGAGGGTGTATAAAATACA 59.899 45.833 0.00 0.00 0.00 2.29
6237 7305 2.290705 ACTTATTTTGGGACGGAGGGTG 60.291 50.000 0.00 0.00 0.00 4.61
6238 7306 1.990327 ACTTATTTTGGGACGGAGGGT 59.010 47.619 0.00 0.00 0.00 4.34
6239 7307 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
6240 7308 3.067684 ACACTTATTTTGGGACGGAGG 57.932 47.619 0.00 0.00 0.00 4.30
6241 7309 5.447624 AAAACACTTATTTTGGGACGGAG 57.552 39.130 0.00 0.00 30.56 4.63
6242 7310 6.320672 TGTTAAAACACTTATTTTGGGACGGA 59.679 34.615 0.00 0.00 33.80 4.69
6243 7311 6.505272 TGTTAAAACACTTATTTTGGGACGG 58.495 36.000 0.00 0.00 33.80 4.79
6244 7312 8.484008 CAATGTTAAAACACTTATTTTGGGACG 58.516 33.333 0.00 0.00 42.51 4.79
6245 7313 9.320352 ACAATGTTAAAACACTTATTTTGGGAC 57.680 29.630 0.00 0.00 42.51 4.46
6281 7349 9.716531 GGGACAACTTTAGTACAACTTTATACT 57.283 33.333 0.00 0.00 35.76 2.12
6282 7350 9.716531 AGGGACAACTTTAGTACAACTTTATAC 57.283 33.333 0.00 0.00 0.00 1.47
6287 7355 9.716531 GTATTAGGGACAACTTTAGTACAACTT 57.283 33.333 0.00 0.00 0.00 2.66
6288 7356 8.873144 TGTATTAGGGACAACTTTAGTACAACT 58.127 33.333 0.00 0.00 0.00 3.16
6289 7357 9.492973 TTGTATTAGGGACAACTTTAGTACAAC 57.507 33.333 0.00 0.00 31.92 3.32
6291 7359 9.715121 CTTTGTATTAGGGACAACTTTAGTACA 57.285 33.333 0.00 0.00 36.55 2.90
6292 7360 9.716531 ACTTTGTATTAGGGACAACTTTAGTAC 57.283 33.333 0.00 0.00 36.55 2.73
6294 7362 9.063615 CAACTTTGTATTAGGGACAACTTTAGT 57.936 33.333 0.00 0.00 36.55 2.24
6295 7363 9.063615 ACAACTTTGTATTAGGGACAACTTTAG 57.936 33.333 0.00 0.00 40.16 1.85
6296 7364 8.983702 ACAACTTTGTATTAGGGACAACTTTA 57.016 30.769 0.00 0.00 40.16 1.85
6297 7365 7.891498 ACAACTTTGTATTAGGGACAACTTT 57.109 32.000 0.00 0.00 40.16 2.66
6311 7379 8.623030 GTGTCCCAACTTTAATACAACTTTGTA 58.377 33.333 4.34 4.34 46.55 2.41
6312 7380 7.340999 AGTGTCCCAACTTTAATACAACTTTGT 59.659 33.333 0.00 0.00 44.86 2.83
6313 7381 7.712797 AGTGTCCCAACTTTAATACAACTTTG 58.287 34.615 0.00 0.00 0.00 2.77
6314 7382 7.891498 AGTGTCCCAACTTTAATACAACTTT 57.109 32.000 0.00 0.00 0.00 2.66
6315 7383 7.891498 AAGTGTCCCAACTTTAATACAACTT 57.109 32.000 0.00 0.00 37.05 2.66
6316 7384 8.983702 TTAAGTGTCCCAACTTTAATACAACT 57.016 30.769 0.00 0.00 40.77 3.16
6317 7385 8.294577 CCTTAAGTGTCCCAACTTTAATACAAC 58.705 37.037 0.97 0.00 40.77 3.32
6318 7386 7.449086 CCCTTAAGTGTCCCAACTTTAATACAA 59.551 37.037 0.97 0.00 40.77 2.41
6319 7387 6.943718 CCCTTAAGTGTCCCAACTTTAATACA 59.056 38.462 0.97 0.00 40.77 2.29
6320 7388 7.170277 TCCCTTAAGTGTCCCAACTTTAATAC 58.830 38.462 0.97 0.00 40.77 1.89
6321 7389 7.017850 ACTCCCTTAAGTGTCCCAACTTTAATA 59.982 37.037 0.97 0.00 40.77 0.98
6322 7390 6.183361 ACTCCCTTAAGTGTCCCAACTTTAAT 60.183 38.462 0.97 0.00 40.77 1.40
6323 7391 5.133153 ACTCCCTTAAGTGTCCCAACTTTAA 59.867 40.000 0.97 0.00 40.77 1.52
6324 7392 4.661709 ACTCCCTTAAGTGTCCCAACTTTA 59.338 41.667 0.97 0.00 40.77 1.85
6325 7393 3.462205 ACTCCCTTAAGTGTCCCAACTTT 59.538 43.478 0.97 0.00 40.77 2.66
6326 7394 3.053826 ACTCCCTTAAGTGTCCCAACTT 58.946 45.455 0.97 0.00 42.89 2.66
6327 7395 2.702748 ACTCCCTTAAGTGTCCCAACT 58.297 47.619 0.97 0.00 0.00 3.16
6328 7396 4.838904 ATACTCCCTTAAGTGTCCCAAC 57.161 45.455 0.97 0.00 0.00 3.77
6329 7397 5.968167 ACATATACTCCCTTAAGTGTCCCAA 59.032 40.000 0.97 0.00 0.00 4.12
6330 7398 5.535029 ACATATACTCCCTTAAGTGTCCCA 58.465 41.667 0.97 0.00 0.00 4.37
6331 7399 7.793948 ATACATATACTCCCTTAAGTGTCCC 57.206 40.000 0.97 0.00 0.00 4.46
6333 7401 9.857957 GCTTATACATATACTCCCTTAAGTGTC 57.142 37.037 0.97 0.00 0.00 3.67
6334 7402 9.375974 TGCTTATACATATACTCCCTTAAGTGT 57.624 33.333 0.97 0.00 0.00 3.55
6335 7403 9.640963 GTGCTTATACATATACTCCCTTAAGTG 57.359 37.037 0.97 0.00 0.00 3.16
6336 7404 9.375974 TGTGCTTATACATATACTCCCTTAAGT 57.624 33.333 0.97 0.00 0.00 2.24
6340 7408 9.726438 GAATTGTGCTTATACATATACTCCCTT 57.274 33.333 0.00 0.00 0.00 3.95
6341 7409 9.105844 AGAATTGTGCTTATACATATACTCCCT 57.894 33.333 0.00 0.00 0.00 4.20
6342 7410 9.155975 CAGAATTGTGCTTATACATATACTCCC 57.844 37.037 0.00 0.00 0.00 4.30
6343 7411 9.712305 ACAGAATTGTGCTTATACATATACTCC 57.288 33.333 1.83 0.00 35.83 3.85
6358 7426 8.795786 TTTGTAACTTGATAACAGAATTGTGC 57.204 30.769 1.83 0.00 37.67 4.57
6361 7429 8.028938 CCCCTTTGTAACTTGATAACAGAATTG 58.971 37.037 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.