Multiple sequence alignment - TraesCS5B01G169000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G169000 chr5B 100.000 3476 0 0 1 3476 313211887 313208412 0.000000e+00 6420.0
1 TraesCS5B01G169000 chr5B 82.143 84 9 3 3216 3295 251506234 251506315 2.240000e-07 67.6
2 TraesCS5B01G169000 chr5A 95.159 2293 84 14 1025 3306 364959074 364956798 0.000000e+00 3594.0
3 TraesCS5B01G169000 chr5A 90.083 121 11 1 146 265 364960844 364960724 4.650000e-34 156.0
4 TraesCS5B01G169000 chr5A 81.013 79 7 5 3211 3281 306188521 306188599 4.850000e-04 56.5
5 TraesCS5B01G169000 chr5D 91.512 2474 118 42 908 3310 276455225 276452773 0.000000e+00 3321.0
6 TraesCS5B01G169000 chr5D 87.611 904 86 18 1 889 276456102 276455210 0.000000e+00 1026.0
7 TraesCS5B01G169000 chr4D 83.246 191 28 4 1539 1728 480846801 480846988 4.610000e-39 172.0
8 TraesCS5B01G169000 chr3D 79.608 255 37 12 3216 3462 405503926 405504173 5.970000e-38 169.0
9 TraesCS5B01G169000 chr3A 78.243 239 35 14 3216 3443 528131686 528131918 1.680000e-28 137.0
10 TraesCS5B01G169000 chr2D 86.957 115 14 1 1601 1715 624320867 624320754 1.010000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G169000 chr5B 313208412 313211887 3475 True 6420.0 6420 100.0000 1 3476 1 chr5B.!!$R1 3475
1 TraesCS5B01G169000 chr5A 364956798 364960844 4046 True 1875.0 3594 92.6210 146 3306 2 chr5A.!!$R1 3160
2 TraesCS5B01G169000 chr5D 276452773 276456102 3329 True 2173.5 3321 89.5615 1 3310 2 chr5D.!!$R1 3309

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
814 833 0.104144 TCTGTTTTGGGAGGGGGAGA 60.104 55.0 0.00 0.0 0.00 3.71 F
1949 2959 0.399806 AGGCCTGAGGAGGAGGAATC 60.400 60.0 3.11 0.0 42.93 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2409 3419 1.005867 CCGCTGCTGGCACAAAAAT 60.006 52.632 0.0 0.0 41.91 1.82 R
2966 4004 2.627699 CCAGCAACCAACCAATTACTGT 59.372 45.455 0.0 0.0 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 5.196341 TGTAGACACATGAAACGAAGACT 57.804 39.130 0.00 0.00 0.00 3.24
41 42 4.322080 AGACACATGAAACGAAGACTGA 57.678 40.909 0.00 0.00 0.00 3.41
54 55 4.629200 ACGAAGACTGAATTCAAGCAGATC 59.371 41.667 9.88 3.13 36.07 2.75
64 65 6.699204 TGAATTCAAGCAGATCTATCGAAGAC 59.301 38.462 5.45 0.00 42.51 3.01
67 68 5.377478 TCAAGCAGATCTATCGAAGACCTA 58.623 41.667 0.00 0.00 42.51 3.08
82 83 6.015688 TCGAAGACCTACACTAACTGAATTGT 60.016 38.462 0.00 0.00 0.00 2.71
132 133 1.750778 CGCCCTCCAACAATGCTAAAT 59.249 47.619 0.00 0.00 0.00 1.40
175 182 3.134804 CGGTGAGGAGAAACTTATCCCAT 59.865 47.826 0.00 0.00 39.36 4.00
179 186 6.052360 GTGAGGAGAAACTTATCCCATCTTC 58.948 44.000 0.00 0.00 39.36 2.87
181 188 6.388100 TGAGGAGAAACTTATCCCATCTTCAT 59.612 38.462 0.00 0.00 39.36 2.57
212 219 1.139058 CGGCCTCACCTTACTAAGCAT 59.861 52.381 0.00 0.00 35.61 3.79
221 229 5.700832 TCACCTTACTAAGCATGACACAAAG 59.299 40.000 0.00 0.00 0.00 2.77
298 306 4.394712 GGGTCCACCACGCCTCAG 62.395 72.222 0.00 0.00 39.85 3.35
299 307 3.626924 GGTCCACCACGCCTCAGT 61.627 66.667 0.00 0.00 35.64 3.41
321 329 1.208165 CCCTAGGGCCACCAAAGACT 61.208 60.000 16.90 0.00 40.13 3.24
402 413 6.568869 TGTGTAAAGCAACATGTTAAAAGCT 58.431 32.000 11.53 12.82 0.00 3.74
406 417 8.572185 TGTAAAGCAACATGTTAAAAGCTCATA 58.428 29.630 18.28 12.90 0.00 2.15
447 458 9.613957 GAAAGGAAGAAGCTAATGAAACTTTAC 57.386 33.333 0.00 0.00 0.00 2.01
454 465 4.761739 AGCTAATGAAACTTTACAGCAGCA 59.238 37.500 0.00 0.00 0.00 4.41
553 564 2.894126 AGAGACTGAAGACGATGGTGTT 59.106 45.455 0.00 0.00 31.41 3.32
574 585 0.106167 TAGCGAGTACAGGGAGGCAT 60.106 55.000 0.00 0.00 0.00 4.40
579 590 1.692749 GTACAGGGAGGCATGGGGA 60.693 63.158 0.00 0.00 0.00 4.81
604 615 3.458579 CGAGGACGCGACACAACG 61.459 66.667 15.93 7.32 0.00 4.10
643 654 1.539496 CGAAAGGTTGACTGGTTCGGA 60.539 52.381 0.00 0.00 37.89 4.55
644 655 2.779506 GAAAGGTTGACTGGTTCGGAT 58.220 47.619 0.00 0.00 0.00 4.18
679 691 1.740285 GGCTCGCCGGAGAAATCTA 59.260 57.895 9.83 0.00 43.27 1.98
689 701 2.032620 GGAGAAATCTAGTGCTCGGGA 58.967 52.381 0.00 0.00 0.00 5.14
717 731 0.832135 GAGGGATAGTGGGGCGATGA 60.832 60.000 0.00 0.00 0.00 2.92
719 733 1.407656 GGGATAGTGGGGCGATGACA 61.408 60.000 0.00 0.00 0.00 3.58
723 737 0.752658 TAGTGGGGCGATGACATGAG 59.247 55.000 0.00 0.00 0.00 2.90
747 761 0.462759 GGCGGGAATGAAGTGGAGAG 60.463 60.000 0.00 0.00 0.00 3.20
770 784 4.215908 GGAGAGGGGAAATCAATTAACCC 58.784 47.826 0.00 0.00 36.58 4.11
781 800 8.251026 GGAAATCAATTAACCCTTTTTCTCGAT 58.749 33.333 0.00 0.00 0.00 3.59
786 805 3.713826 AACCCTTTTTCTCGATGCCTA 57.286 42.857 0.00 0.00 0.00 3.93
803 822 6.291637 CGATGCCTAACGTATAGTCTGTTTTG 60.292 42.308 0.00 0.00 0.00 2.44
806 825 5.625197 GCCTAACGTATAGTCTGTTTTGGGA 60.625 44.000 0.00 0.00 0.00 4.37
810 829 3.431766 CGTATAGTCTGTTTTGGGAGGGG 60.432 52.174 0.00 0.00 0.00 4.79
812 831 0.402861 AGTCTGTTTTGGGAGGGGGA 60.403 55.000 0.00 0.00 0.00 4.81
814 833 0.104144 TCTGTTTTGGGAGGGGGAGA 60.104 55.000 0.00 0.00 0.00 3.71
816 835 1.140134 TGTTTTGGGAGGGGGAGAGG 61.140 60.000 0.00 0.00 0.00 3.69
827 846 2.301738 GGGAGAGGGGTGGTTCTGG 61.302 68.421 0.00 0.00 0.00 3.86
851 870 2.296073 TAGTCGGCCCCAAACAAAAT 57.704 45.000 0.00 0.00 0.00 1.82
929 960 3.610040 AAAATTCATCTTTTCCGGGGC 57.390 42.857 0.00 0.00 0.00 5.80
931 962 2.230130 ATTCATCTTTTCCGGGGCAA 57.770 45.000 0.00 0.00 0.00 4.52
932 963 1.253100 TTCATCTTTTCCGGGGCAAC 58.747 50.000 0.00 0.00 0.00 4.17
946 977 2.885644 CAACCGGACGGCGATCAG 60.886 66.667 16.62 8.26 39.32 2.90
956 987 1.880340 GGCGATCAGAGTTGAGCCG 60.880 63.158 0.00 0.00 35.66 5.52
1014 1991 2.877975 CTTCACATGAAGGGCCTGG 58.122 57.895 6.92 0.00 45.79 4.45
1017 1994 1.304713 CACATGAAGGGCCTGGCTT 60.305 57.895 19.68 5.66 0.00 4.35
1032 2036 0.867746 GGCTTCATGCGCGATTGATA 59.132 50.000 12.10 2.27 44.05 2.15
1052 2056 1.285078 ACCATGGCCTAGACCTTTTCC 59.715 52.381 13.04 0.00 0.00 3.13
1059 2063 2.158740 GCCTAGACCTTTTCCTCCATCC 60.159 54.545 0.00 0.00 0.00 3.51
1063 2067 1.570979 GACCTTTTCCTCCATCCCCAT 59.429 52.381 0.00 0.00 0.00 4.00
1122 2131 1.453928 GGCCTCTCCAATTTCCGGG 60.454 63.158 0.00 0.00 34.01 5.73
1144 2154 0.984995 CCGGGAAGAGAAGAAACCCT 59.015 55.000 0.00 0.00 38.51 4.34
1875 2885 3.068881 CCTGCCGTGGAGAAGGAA 58.931 61.111 0.00 0.00 30.92 3.36
1920 2930 0.445436 GGCAAGTGCATGAGAGTTCG 59.555 55.000 5.52 0.00 44.36 3.95
1949 2959 0.399806 AGGCCTGAGGAGGAGGAATC 60.400 60.000 3.11 0.00 42.93 2.52
2272 3282 4.951094 AGACACCATCTGAAGTCTAGGTAC 59.049 45.833 0.00 0.00 39.40 3.34
2279 3289 6.210385 CCATCTGAAGTCTAGGTACTGCATAT 59.790 42.308 0.00 0.00 41.52 1.78
2281 3291 8.965819 CATCTGAAGTCTAGGTACTGCATATAT 58.034 37.037 0.00 0.00 41.52 0.86
2284 3294 5.821516 AGTCTAGGTACTGCATATATCGC 57.178 43.478 0.00 1.55 41.52 4.58
2285 3295 5.254115 AGTCTAGGTACTGCATATATCGCA 58.746 41.667 8.79 8.79 41.52 5.10
2311 3321 1.934849 GCCCACGAGGTTCATTTTTGC 60.935 52.381 0.00 0.00 38.26 3.68
2332 3342 6.544928 TGCCACATTGTAGATTTCTCTAGA 57.455 37.500 0.00 0.00 34.63 2.43
2409 3419 9.419297 GGCTTAAAGATACGTCACATATGATAA 57.581 33.333 10.38 0.00 37.14 1.75
2454 3464 6.783977 TGATGGTATTCCGGGTATACTAAACT 59.216 38.462 19.29 3.42 36.30 2.66
2514 3524 8.757982 AATAATATTGAGTGCAATGGTTCTCT 57.242 30.769 0.00 0.00 44.18 3.10
2555 3565 9.783256 CATAACATATACATTGCATGATTCCAG 57.217 33.333 0.00 0.00 0.00 3.86
2556 3566 7.828508 AACATATACATTGCATGATTCCAGT 57.171 32.000 0.00 0.00 0.00 4.00
2557 3567 7.828508 ACATATACATTGCATGATTCCAGTT 57.171 32.000 0.00 0.00 0.00 3.16
2558 3568 7.879070 ACATATACATTGCATGATTCCAGTTC 58.121 34.615 0.00 0.00 0.00 3.01
2559 3569 7.722728 ACATATACATTGCATGATTCCAGTTCT 59.277 33.333 0.00 0.00 0.00 3.01
2560 3570 8.573885 CATATACATTGCATGATTCCAGTTCTT 58.426 33.333 0.00 0.00 0.00 2.52
2561 3571 5.733620 ACATTGCATGATTCCAGTTCTTT 57.266 34.783 0.00 0.00 0.00 2.52
2562 3572 5.475719 ACATTGCATGATTCCAGTTCTTTG 58.524 37.500 0.00 0.00 0.00 2.77
2563 3573 5.244402 ACATTGCATGATTCCAGTTCTTTGA 59.756 36.000 0.00 0.00 0.00 2.69
2564 3574 5.381174 TTGCATGATTCCAGTTCTTTGAG 57.619 39.130 0.00 0.00 0.00 3.02
2584 3601 8.731275 TTTGAGGTATGTTGAGTGGTATTATG 57.269 34.615 0.00 0.00 0.00 1.90
2585 3602 7.432148 TGAGGTATGTTGAGTGGTATTATGT 57.568 36.000 0.00 0.00 0.00 2.29
2586 3603 7.272244 TGAGGTATGTTGAGTGGTATTATGTG 58.728 38.462 0.00 0.00 0.00 3.21
2605 3625 8.893219 TTATGTGAATCCTAAGCATCAACTAG 57.107 34.615 0.00 0.00 0.00 2.57
2613 3633 0.176680 AGCATCAACTAGTCCAGCCG 59.823 55.000 0.00 0.00 0.00 5.52
2654 3674 1.980765 TCAGCTTGTCCTCCTTGATGT 59.019 47.619 0.00 0.00 0.00 3.06
2682 3702 5.370880 AGCCTGGAAATCAGATGTATAGGTT 59.629 40.000 0.00 0.00 46.18 3.50
2711 3731 8.671921 CAAGCTGTGACAGATTAATCAACTTAT 58.328 33.333 16.30 0.00 38.05 1.73
2771 3800 7.774157 ACTACAGTAGAATCTGTTTATCCTCGA 59.226 37.037 14.94 0.00 44.92 4.04
2779 3808 3.132289 TCTGTTTATCCTCGATGGTGGTC 59.868 47.826 0.00 0.00 37.07 4.02
2849 3878 1.228245 GCCTCCAACAAGTGCCTCA 60.228 57.895 0.00 0.00 0.00 3.86
2966 4004 6.479972 ACCGATTCAGACATAAGGATGTTA 57.520 37.500 0.00 0.00 46.64 2.41
2985 4023 4.890581 TGTTACAGTAATTGGTTGGTTGCT 59.109 37.500 0.00 0.00 0.00 3.91
3082 4121 4.074259 CCTGTGACCAGTTCATTTCATCA 58.926 43.478 0.00 0.00 36.32 3.07
3340 4402 9.793252 AATATAAAAGTGCACTTGATGATGAAC 57.207 29.630 31.73 0.00 36.12 3.18
3341 4403 4.510038 AAAGTGCACTTGATGATGAACC 57.490 40.909 31.73 0.00 36.12 3.62
3342 4404 3.430042 AGTGCACTTGATGATGAACCT 57.570 42.857 15.25 0.00 0.00 3.50
3343 4405 3.079578 AGTGCACTTGATGATGAACCTG 58.920 45.455 15.25 0.00 0.00 4.00
3344 4406 3.076621 GTGCACTTGATGATGAACCTGA 58.923 45.455 10.32 0.00 0.00 3.86
3345 4407 3.693085 GTGCACTTGATGATGAACCTGAT 59.307 43.478 10.32 0.00 0.00 2.90
3346 4408 3.692593 TGCACTTGATGATGAACCTGATG 59.307 43.478 0.00 0.00 0.00 3.07
3347 4409 3.943381 GCACTTGATGATGAACCTGATGA 59.057 43.478 0.00 0.00 0.00 2.92
3348 4410 4.579340 GCACTTGATGATGAACCTGATGAT 59.421 41.667 0.00 0.00 0.00 2.45
3349 4411 5.761726 GCACTTGATGATGAACCTGATGATA 59.238 40.000 0.00 0.00 0.00 2.15
3350 4412 6.293298 GCACTTGATGATGAACCTGATGATAC 60.293 42.308 0.00 0.00 0.00 2.24
3351 4413 6.204301 CACTTGATGATGAACCTGATGATACC 59.796 42.308 0.00 0.00 0.00 2.73
3352 4414 5.892524 TGATGATGAACCTGATGATACCA 57.107 39.130 0.00 0.00 0.00 3.25
3353 4415 6.251255 TGATGATGAACCTGATGATACCAA 57.749 37.500 0.00 0.00 0.00 3.67
3354 4416 6.844829 TGATGATGAACCTGATGATACCAAT 58.155 36.000 0.00 0.00 0.00 3.16
3355 4417 7.292319 TGATGATGAACCTGATGATACCAATT 58.708 34.615 0.00 0.00 0.00 2.32
3356 4418 7.781219 TGATGATGAACCTGATGATACCAATTT 59.219 33.333 0.00 0.00 0.00 1.82
3357 4419 7.959658 TGATGAACCTGATGATACCAATTTT 57.040 32.000 0.00 0.00 0.00 1.82
3358 4420 7.774134 TGATGAACCTGATGATACCAATTTTG 58.226 34.615 0.00 0.00 0.00 2.44
3359 4421 7.396907 TGATGAACCTGATGATACCAATTTTGT 59.603 33.333 0.00 0.00 0.00 2.83
3360 4422 8.821686 ATGAACCTGATGATACCAATTTTGTA 57.178 30.769 0.00 0.00 0.00 2.41
3361 4423 8.821686 TGAACCTGATGATACCAATTTTGTAT 57.178 30.769 0.00 0.00 0.00 2.29
3362 4424 9.253832 TGAACCTGATGATACCAATTTTGTATT 57.746 29.630 0.26 0.00 0.00 1.89
3363 4425 9.520204 GAACCTGATGATACCAATTTTGTATTG 57.480 33.333 0.26 0.00 0.00 1.90
3364 4426 8.593945 ACCTGATGATACCAATTTTGTATTGT 57.406 30.769 0.00 0.00 0.00 2.71
3365 4427 8.469200 ACCTGATGATACCAATTTTGTATTGTG 58.531 33.333 0.00 0.00 0.00 3.33
3366 4428 7.922278 CCTGATGATACCAATTTTGTATTGTGG 59.078 37.037 0.00 0.00 35.39 4.17
3367 4429 8.586879 TGATGATACCAATTTTGTATTGTGGA 57.413 30.769 0.00 0.00 33.39 4.02
3368 4430 9.199645 TGATGATACCAATTTTGTATTGTGGAT 57.800 29.630 0.00 0.00 33.39 3.41
3369 4431 9.467258 GATGATACCAATTTTGTATTGTGGATG 57.533 33.333 0.00 0.00 33.39 3.51
3370 4432 8.359875 TGATACCAATTTTGTATTGTGGATGT 57.640 30.769 0.00 0.00 33.39 3.06
3371 4433 8.811017 TGATACCAATTTTGTATTGTGGATGTT 58.189 29.630 0.00 0.00 33.39 2.71
3372 4434 9.651913 GATACCAATTTTGTATTGTGGATGTTT 57.348 29.630 0.00 0.00 33.39 2.83
3385 4447 8.655651 ATTGTGGATGTTTATTTGTTTTTCGT 57.344 26.923 0.00 0.00 0.00 3.85
3386 4448 8.480643 TTGTGGATGTTTATTTGTTTTTCGTT 57.519 26.923 0.00 0.00 0.00 3.85
3387 4449 9.582431 TTGTGGATGTTTATTTGTTTTTCGTTA 57.418 25.926 0.00 0.00 0.00 3.18
3388 4450 9.582431 TGTGGATGTTTATTTGTTTTTCGTTAA 57.418 25.926 0.00 0.00 0.00 2.01
3397 4459 9.635520 TTATTTGTTTTTCGTTAAACTTGGTCA 57.364 25.926 13.42 0.00 38.52 4.02
3398 4460 7.941795 TTTGTTTTTCGTTAAACTTGGTCAA 57.058 28.000 13.42 0.00 38.52 3.18
3399 4461 7.941795 TTGTTTTTCGTTAAACTTGGTCAAA 57.058 28.000 13.42 0.13 38.52 2.69
3400 4462 7.335861 TGTTTTTCGTTAAACTTGGTCAAAC 57.664 32.000 13.42 0.00 38.52 2.93
3401 4463 6.921857 TGTTTTTCGTTAAACTTGGTCAAACA 59.078 30.769 13.42 0.00 38.52 2.83
3402 4464 7.599245 TGTTTTTCGTTAAACTTGGTCAAACAT 59.401 29.630 13.42 0.00 38.52 2.71
3403 4465 9.074443 GTTTTTCGTTAAACTTGGTCAAACATA 57.926 29.630 7.55 0.00 35.60 2.29
3404 4466 9.804758 TTTTTCGTTAAACTTGGTCAAACATAT 57.195 25.926 0.00 0.00 0.00 1.78
3406 4468 9.881529 TTTCGTTAAACTTGGTCAAACATATAC 57.118 29.630 0.00 0.00 0.00 1.47
3407 4469 8.604640 TCGTTAAACTTGGTCAAACATATACA 57.395 30.769 0.00 0.00 0.00 2.29
3408 4470 9.053840 TCGTTAAACTTGGTCAAACATATACAA 57.946 29.630 0.00 0.00 0.00 2.41
3409 4471 9.834628 CGTTAAACTTGGTCAAACATATACAAT 57.165 29.630 0.00 0.00 0.00 2.71
3451 4513 9.970395 ACAAAATATGCACTATATGTTGGAATG 57.030 29.630 11.60 0.00 45.41 2.67
3452 4514 9.414295 CAAAATATGCACTATATGTTGGAATGG 57.586 33.333 0.00 0.00 40.81 3.16
3453 4515 8.938801 AAATATGCACTATATGTTGGAATGGA 57.061 30.769 0.00 0.00 32.30 3.41
3454 4516 8.571461 AATATGCACTATATGTTGGAATGGAG 57.429 34.615 0.00 0.00 32.30 3.86
3455 4517 4.717877 TGCACTATATGTTGGAATGGAGG 58.282 43.478 0.00 0.00 0.00 4.30
3456 4518 4.411869 TGCACTATATGTTGGAATGGAGGA 59.588 41.667 0.00 0.00 0.00 3.71
3457 4519 5.104151 TGCACTATATGTTGGAATGGAGGAA 60.104 40.000 0.00 0.00 0.00 3.36
3458 4520 5.471456 GCACTATATGTTGGAATGGAGGAAG 59.529 44.000 0.00 0.00 0.00 3.46
3459 4521 6.595682 CACTATATGTTGGAATGGAGGAAGT 58.404 40.000 0.00 0.00 0.00 3.01
3460 4522 7.689313 GCACTATATGTTGGAATGGAGGAAGTA 60.689 40.741 0.00 0.00 0.00 2.24
3461 4523 8.378565 CACTATATGTTGGAATGGAGGAAGTAT 58.621 37.037 0.00 0.00 0.00 2.12
3462 4524 8.598041 ACTATATGTTGGAATGGAGGAAGTATC 58.402 37.037 0.00 0.00 0.00 2.24
3463 4525 5.715439 ATGTTGGAATGGAGGAAGTATCA 57.285 39.130 0.00 0.00 0.00 2.15
3464 4526 5.715439 TGTTGGAATGGAGGAAGTATCAT 57.285 39.130 0.00 0.00 0.00 2.45
3465 4527 6.078456 TGTTGGAATGGAGGAAGTATCATT 57.922 37.500 0.00 0.00 33.17 2.57
3466 4528 6.493166 TGTTGGAATGGAGGAAGTATCATTT 58.507 36.000 0.00 0.00 30.97 2.32
3467 4529 6.953520 TGTTGGAATGGAGGAAGTATCATTTT 59.046 34.615 0.00 0.00 30.97 1.82
3468 4530 7.093814 TGTTGGAATGGAGGAAGTATCATTTTG 60.094 37.037 0.00 0.00 30.97 2.44
3469 4531 6.493166 TGGAATGGAGGAAGTATCATTTTGT 58.507 36.000 0.00 0.00 30.97 2.83
3470 4532 7.638444 TGGAATGGAGGAAGTATCATTTTGTA 58.362 34.615 0.00 0.00 30.97 2.41
3471 4533 7.775093 TGGAATGGAGGAAGTATCATTTTGTAG 59.225 37.037 0.00 0.00 30.97 2.74
3472 4534 7.229506 GGAATGGAGGAAGTATCATTTTGTAGG 59.770 40.741 0.00 0.00 30.97 3.18
3473 4535 6.001449 TGGAGGAAGTATCATTTTGTAGGG 57.999 41.667 0.00 0.00 0.00 3.53
3474 4536 5.729229 TGGAGGAAGTATCATTTTGTAGGGA 59.271 40.000 0.00 0.00 0.00 4.20
3475 4537 6.056236 GGAGGAAGTATCATTTTGTAGGGAC 58.944 44.000 0.00 0.00 0.00 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 5.050091 TCTGCTTGAATTCAGTCTTCGTTTC 60.050 40.000 8.41 0.00 0.00 2.78
33 34 7.096106 CGATAGATCTGCTTGAATTCAGTCTTC 60.096 40.741 8.41 3.21 39.76 2.87
41 42 7.014711 TAGGTCTTCGATAGATCTGCTTGAATT 59.985 37.037 16.08 0.00 44.25 2.17
54 55 6.922247 TCAGTTAGTGTAGGTCTTCGATAG 57.078 41.667 0.00 0.00 0.00 2.08
64 65 8.948631 ATATCACACAATTCAGTTAGTGTAGG 57.051 34.615 0.00 0.00 42.79 3.18
67 68 6.535150 CGGATATCACACAATTCAGTTAGTGT 59.465 38.462 4.83 0.00 45.29 3.55
82 83 3.886123 TCTGTCTCTGACGGATATCACA 58.114 45.455 4.83 1.12 42.21 3.58
153 154 2.500098 TGGGATAAGTTTCTCCTCACCG 59.500 50.000 4.66 0.00 0.00 4.94
212 219 8.911918 TCTAAGTTTATTTAGGCTTTGTGTCA 57.088 30.769 0.00 0.00 32.66 3.58
255 263 0.044092 TGCAGGTGGGAGGATTCCTA 59.956 55.000 4.86 0.00 43.49 2.94
315 323 5.265989 CTCTACCTCCTGGTCTTAGTCTTT 58.734 45.833 0.00 0.00 44.78 2.52
321 329 3.309701 GGTTCCTCTACCTCCTGGTCTTA 60.310 52.174 0.00 0.00 44.78 2.10
356 367 2.660064 GCCGCCTCCTCTCCAAAGA 61.660 63.158 0.00 0.00 0.00 2.52
376 387 6.475402 GCTTTTAACATGTTGCTTTACACAGT 59.525 34.615 21.42 0.00 0.00 3.55
380 391 6.800543 TGAGCTTTTAACATGTTGCTTTACA 58.199 32.000 21.42 11.72 0.00 2.41
425 436 7.024171 GCTGTAAAGTTTCATTAGCTTCTTCC 58.976 38.462 0.00 0.00 0.00 3.46
432 443 5.046910 TGCTGCTGTAAAGTTTCATTAGC 57.953 39.130 0.00 0.00 0.00 3.09
447 458 1.064296 GCTAATGCTGCTGCTGCTG 59.936 57.895 27.67 16.73 40.48 4.41
497 508 4.202315 TGTCTTCTTCCAGAATCAACCGAA 60.202 41.667 0.00 0.00 33.13 4.30
501 512 5.105997 CCCATTGTCTTCTTCCAGAATCAAC 60.106 44.000 6.48 0.00 33.94 3.18
507 518 1.704628 TGCCCATTGTCTTCTTCCAGA 59.295 47.619 0.00 0.00 0.00 3.86
509 520 2.238521 GTTGCCCATTGTCTTCTTCCA 58.761 47.619 0.00 0.00 0.00 3.53
510 521 1.546029 GGTTGCCCATTGTCTTCTTCC 59.454 52.381 0.00 0.00 0.00 3.46
524 535 2.416162 CGTCTTCAGTCTCTAGGTTGCC 60.416 54.545 0.00 0.00 0.00 4.52
532 543 2.520069 ACACCATCGTCTTCAGTCTCT 58.480 47.619 0.00 0.00 0.00 3.10
538 549 2.683968 GCTACAACACCATCGTCTTCA 58.316 47.619 0.00 0.00 0.00 3.02
539 550 1.654105 CGCTACAACACCATCGTCTTC 59.346 52.381 0.00 0.00 0.00 2.87
553 564 1.035932 GCCTCCCTGTACTCGCTACA 61.036 60.000 0.00 0.00 34.01 2.74
597 608 0.662619 CTCCACATGCAACGTTGTGT 59.337 50.000 27.78 21.74 41.27 3.72
598 609 0.040157 CCTCCACATGCAACGTTGTG 60.040 55.000 27.78 21.11 42.25 3.33
599 610 1.172180 CCCTCCACATGCAACGTTGT 61.172 55.000 27.78 7.51 0.00 3.32
600 611 1.580942 CCCTCCACATGCAACGTTG 59.419 57.895 23.90 23.90 0.00 4.10
601 612 2.268076 GCCCTCCACATGCAACGTT 61.268 57.895 0.00 0.00 0.00 3.99
604 615 3.776158 TTGCCCTCCACATGCAAC 58.224 55.556 0.00 0.00 39.86 4.17
624 635 2.249844 TCCGAACCAGTCAACCTTTC 57.750 50.000 0.00 0.00 0.00 2.62
679 691 0.537371 CCAAACCTTTCCCGAGCACT 60.537 55.000 0.00 0.00 0.00 4.40
689 701 2.311841 CCCACTATCCCTCCAAACCTTT 59.688 50.000 0.00 0.00 0.00 3.11
717 731 3.943137 TTCCCGCCCTCCCTCATGT 62.943 63.158 0.00 0.00 0.00 3.21
719 733 2.039405 ATTCCCGCCCTCCCTCAT 60.039 61.111 0.00 0.00 0.00 2.90
723 737 2.193248 CTTCATTCCCGCCCTCCC 59.807 66.667 0.00 0.00 0.00 4.30
747 761 4.215908 GGTTAATTGATTTCCCCTCTCCC 58.784 47.826 0.00 0.00 0.00 4.30
770 784 5.968387 ATACGTTAGGCATCGAGAAAAAG 57.032 39.130 0.00 0.00 0.00 2.27
781 800 5.172934 CCAAAACAGACTATACGTTAGGCA 58.827 41.667 11.54 0.00 0.00 4.75
786 805 4.323257 CCCTCCCAAAACAGACTATACGTT 60.323 45.833 0.00 0.00 0.00 3.99
803 822 4.825679 CACCCCTCTCCCCCTCCC 62.826 77.778 0.00 0.00 0.00 4.30
806 825 3.552911 AACCACCCCTCTCCCCCT 61.553 66.667 0.00 0.00 0.00 4.79
810 829 2.972819 GCCAGAACCACCCCTCTCC 61.973 68.421 0.00 0.00 0.00 3.71
812 831 2.741878 TACGCCAGAACCACCCCTCT 62.742 60.000 0.00 0.00 0.00 3.69
814 833 0.325860 TATACGCCAGAACCACCCCT 60.326 55.000 0.00 0.00 0.00 4.79
816 835 0.828677 ACTATACGCCAGAACCACCC 59.171 55.000 0.00 0.00 0.00 4.61
819 838 0.742505 CCGACTATACGCCAGAACCA 59.257 55.000 0.00 0.00 0.00 3.67
827 846 1.144496 TTTGGGGCCGACTATACGC 59.856 57.895 0.00 0.00 0.00 4.42
916 947 4.434483 GGTTGCCCCGGAAAAGAT 57.566 55.556 0.73 0.00 0.00 2.40
929 960 2.885644 CTGATCGCCGTCCGGTTG 60.886 66.667 7.66 0.82 37.59 3.77
931 962 3.518998 CTCTGATCGCCGTCCGGT 61.519 66.667 7.66 0.00 37.59 5.28
932 963 3.064987 AACTCTGATCGCCGTCCGG 62.065 63.158 0.24 0.24 37.59 5.14
933 964 1.874019 CAACTCTGATCGCCGTCCG 60.874 63.158 0.00 0.00 38.61 4.79
946 977 0.539986 TATTGGACCCGGCTCAACTC 59.460 55.000 0.00 0.00 0.00 3.01
956 987 2.379005 CCTGCCTTTTCTATTGGACCC 58.621 52.381 0.00 0.00 0.00 4.46
987 1018 3.965292 CTTCATGTGAAGCATAGCCTG 57.035 47.619 9.59 0.00 44.10 4.85
1014 1991 1.398960 GGTATCAATCGCGCATGAAGC 60.399 52.381 15.81 11.64 40.87 3.86
1017 1994 1.799994 CATGGTATCAATCGCGCATGA 59.200 47.619 8.75 14.53 0.00 3.07
1032 2036 1.285078 GGAAAAGGTCTAGGCCATGGT 59.715 52.381 17.52 0.00 0.00 3.55
1052 2056 2.507058 TGTTCTTCTCATGGGGATGGAG 59.493 50.000 0.00 0.00 0.00 3.86
1059 2063 6.985117 TCTTTGATTTTGTTCTTCTCATGGG 58.015 36.000 0.00 0.00 0.00 4.00
1063 2067 8.737168 TTCTCTCTTTGATTTTGTTCTTCTCA 57.263 30.769 0.00 0.00 0.00 3.27
1122 2131 1.375523 TTTCTTCTCTTCCCGGCGC 60.376 57.895 0.00 0.00 0.00 6.53
1144 2154 0.398098 GGGGAATCAGAGGTCGGGTA 60.398 60.000 0.00 0.00 0.00 3.69
1734 2744 2.266055 CTGTTCCTGGAGGGCGAC 59.734 66.667 0.00 0.00 35.41 5.19
1847 2857 1.019278 CACGGCAGGCGTTTCAGTAT 61.019 55.000 21.14 0.00 0.00 2.12
1949 2959 4.148825 CAGCCGGTTCCTCCTCGG 62.149 72.222 1.90 0.00 45.84 4.63
2284 3294 3.832237 AACCTCGTGGGCAGCACTG 62.832 63.158 8.63 0.00 39.10 3.66
2285 3295 3.537206 GAACCTCGTGGGCAGCACT 62.537 63.158 8.63 0.00 39.10 4.40
2286 3296 3.050275 GAACCTCGTGGGCAGCAC 61.050 66.667 8.63 0.00 39.10 4.40
2293 3303 1.339610 TGGCAAAAATGAACCTCGTGG 59.660 47.619 0.99 0.99 39.83 4.94
2296 3306 2.791383 TGTGGCAAAAATGAACCTCG 57.209 45.000 0.00 0.00 0.00 4.63
2409 3419 1.005867 CCGCTGCTGGCACAAAAAT 60.006 52.632 0.00 0.00 41.91 1.82
2412 3422 2.282391 ATCCGCTGCTGGCACAAA 60.282 55.556 0.00 0.00 41.91 2.83
2462 3472 6.527722 GCATCATGAAAGTTTAATCAGCGAAA 59.472 34.615 0.00 0.00 0.00 3.46
2500 3510 2.229792 TGGTGAAGAGAACCATTGCAC 58.770 47.619 0.00 0.00 42.82 4.57
2514 3524 9.344772 GTATATGTTATGTAATTGGGTGGTGAA 57.655 33.333 0.00 0.00 0.00 3.18
2555 3565 5.063880 ACCACTCAACATACCTCAAAGAAC 58.936 41.667 0.00 0.00 0.00 3.01
2556 3566 5.304686 ACCACTCAACATACCTCAAAGAA 57.695 39.130 0.00 0.00 0.00 2.52
2557 3567 4.974645 ACCACTCAACATACCTCAAAGA 57.025 40.909 0.00 0.00 0.00 2.52
2558 3568 8.830580 CATAATACCACTCAACATACCTCAAAG 58.169 37.037 0.00 0.00 0.00 2.77
2559 3569 8.325787 ACATAATACCACTCAACATACCTCAAA 58.674 33.333 0.00 0.00 0.00 2.69
2560 3570 7.768582 CACATAATACCACTCAACATACCTCAA 59.231 37.037 0.00 0.00 0.00 3.02
2561 3571 7.125053 TCACATAATACCACTCAACATACCTCA 59.875 37.037 0.00 0.00 0.00 3.86
2562 3572 7.497595 TCACATAATACCACTCAACATACCTC 58.502 38.462 0.00 0.00 0.00 3.85
2563 3573 7.432148 TCACATAATACCACTCAACATACCT 57.568 36.000 0.00 0.00 0.00 3.08
2564 3574 8.677148 ATTCACATAATACCACTCAACATACC 57.323 34.615 0.00 0.00 0.00 2.73
2584 3601 5.755861 GGACTAGTTGATGCTTAGGATTCAC 59.244 44.000 0.00 0.00 0.00 3.18
2585 3602 5.425217 TGGACTAGTTGATGCTTAGGATTCA 59.575 40.000 0.00 0.00 0.00 2.57
2586 3603 5.918608 TGGACTAGTTGATGCTTAGGATTC 58.081 41.667 0.00 0.00 0.00 2.52
2605 3625 1.365633 CTAGGATGAGCGGCTGGAC 59.634 63.158 7.50 0.00 0.00 4.02
2613 3633 1.840635 ACCCAAGGAACTAGGATGAGC 59.159 52.381 0.00 0.00 38.49 4.26
2654 3674 2.766263 ACATCTGATTTCCAGGCTACGA 59.234 45.455 0.00 0.00 43.12 3.43
2682 3702 5.559770 TGATTAATCTGTCACAGCTTGGAA 58.440 37.500 16.24 0.00 0.00 3.53
2751 3780 6.642950 CACCATCGAGGATAAACAGATTCTAC 59.357 42.308 0.00 0.00 41.22 2.59
2771 3800 2.967887 TGATGATCGAGATGACCACCAT 59.032 45.455 0.00 0.00 38.43 3.55
2807 3836 3.505680 GCAGTGTCCATGGTGTTATGAAA 59.494 43.478 12.58 0.00 0.00 2.69
2849 3878 6.839124 TCTGTGTCTGGAATAAATTTGCAT 57.161 33.333 0.00 0.00 0.00 3.96
2966 4004 2.627699 CCAGCAACCAACCAATTACTGT 59.372 45.455 0.00 0.00 0.00 3.55
2985 4023 9.567776 TTTAGAAACTACATTCATTCTGAACCA 57.432 29.630 0.00 0.00 39.45 3.67
3082 4121 3.380637 GCAGAGGTTGATGCATGATTTCT 59.619 43.478 2.46 0.00 42.11 2.52
3089 4128 3.008813 CCTATAGGCAGAGGTTGATGCAT 59.991 47.826 5.67 0.00 44.37 3.96
3096 4135 2.868964 TGGTCCTATAGGCAGAGGTT 57.131 50.000 14.50 0.00 34.53 3.50
3314 4376 9.793252 GTTCATCATCAAGTGCACTTTTATATT 57.207 29.630 29.23 12.82 33.11 1.28
3315 4377 8.408601 GGTTCATCATCAAGTGCACTTTTATAT 58.591 33.333 29.23 16.93 33.11 0.86
3316 4378 7.611467 AGGTTCATCATCAAGTGCACTTTTATA 59.389 33.333 29.23 15.46 33.11 0.98
3317 4379 6.435277 AGGTTCATCATCAAGTGCACTTTTAT 59.565 34.615 29.23 21.33 33.11 1.40
3318 4380 5.769662 AGGTTCATCATCAAGTGCACTTTTA 59.230 36.000 29.23 20.06 33.11 1.52
3319 4381 4.586001 AGGTTCATCATCAAGTGCACTTTT 59.414 37.500 29.23 16.81 33.11 2.27
3320 4382 4.022589 CAGGTTCATCATCAAGTGCACTTT 60.023 41.667 29.23 13.77 33.11 2.66
3321 4383 3.504906 CAGGTTCATCATCAAGTGCACTT 59.495 43.478 26.36 26.36 36.45 3.16
3322 4384 3.079578 CAGGTTCATCATCAAGTGCACT 58.920 45.455 15.25 15.25 0.00 4.40
3323 4385 3.076621 TCAGGTTCATCATCAAGTGCAC 58.923 45.455 9.40 9.40 0.00 4.57
3324 4386 3.421919 TCAGGTTCATCATCAAGTGCA 57.578 42.857 0.00 0.00 0.00 4.57
3325 4387 3.943381 TCATCAGGTTCATCATCAAGTGC 59.057 43.478 0.00 0.00 0.00 4.40
3326 4388 6.204301 GGTATCATCAGGTTCATCATCAAGTG 59.796 42.308 0.00 0.00 0.00 3.16
3327 4389 6.126681 TGGTATCATCAGGTTCATCATCAAGT 60.127 38.462 0.00 0.00 0.00 3.16
3328 4390 6.293698 TGGTATCATCAGGTTCATCATCAAG 58.706 40.000 0.00 0.00 0.00 3.02
3329 4391 6.251255 TGGTATCATCAGGTTCATCATCAA 57.749 37.500 0.00 0.00 0.00 2.57
3330 4392 5.892524 TGGTATCATCAGGTTCATCATCA 57.107 39.130 0.00 0.00 0.00 3.07
3331 4393 7.756395 AATTGGTATCATCAGGTTCATCATC 57.244 36.000 0.00 0.00 0.00 2.92
3332 4394 8.418662 CAAAATTGGTATCATCAGGTTCATCAT 58.581 33.333 0.00 0.00 0.00 2.45
3333 4395 7.396907 ACAAAATTGGTATCATCAGGTTCATCA 59.603 33.333 0.00 0.00 0.00 3.07
3334 4396 7.775120 ACAAAATTGGTATCATCAGGTTCATC 58.225 34.615 0.00 0.00 0.00 2.92
3335 4397 7.722949 ACAAAATTGGTATCATCAGGTTCAT 57.277 32.000 0.00 0.00 0.00 2.57
3336 4398 8.821686 ATACAAAATTGGTATCATCAGGTTCA 57.178 30.769 0.00 0.00 0.00 3.18
3337 4399 9.520204 CAATACAAAATTGGTATCATCAGGTTC 57.480 33.333 0.00 0.00 31.32 3.62
3338 4400 9.034800 ACAATACAAAATTGGTATCATCAGGTT 57.965 29.630 0.00 0.00 33.56 3.50
3339 4401 8.469200 CACAATACAAAATTGGTATCATCAGGT 58.531 33.333 0.00 0.00 33.56 4.00
3340 4402 7.922278 CCACAATACAAAATTGGTATCATCAGG 59.078 37.037 0.00 0.00 33.56 3.86
3341 4403 8.685427 TCCACAATACAAAATTGGTATCATCAG 58.315 33.333 0.00 0.00 33.56 2.90
3342 4404 8.586879 TCCACAATACAAAATTGGTATCATCA 57.413 30.769 0.00 0.00 33.56 3.07
3343 4405 9.467258 CATCCACAATACAAAATTGGTATCATC 57.533 33.333 0.00 0.00 33.56 2.92
3344 4406 8.980596 ACATCCACAATACAAAATTGGTATCAT 58.019 29.630 0.00 0.00 33.56 2.45
3345 4407 8.359875 ACATCCACAATACAAAATTGGTATCA 57.640 30.769 0.00 0.00 33.56 2.15
3346 4408 9.651913 AAACATCCACAATACAAAATTGGTATC 57.348 29.630 0.00 0.00 33.56 2.24
3359 4421 9.751542 ACGAAAAACAAATAAACATCCACAATA 57.248 25.926 0.00 0.00 0.00 1.90
3360 4422 8.655651 ACGAAAAACAAATAAACATCCACAAT 57.344 26.923 0.00 0.00 0.00 2.71
3361 4423 8.480643 AACGAAAAACAAATAAACATCCACAA 57.519 26.923 0.00 0.00 0.00 3.33
3362 4424 9.582431 TTAACGAAAAACAAATAAACATCCACA 57.418 25.926 0.00 0.00 0.00 4.17
3371 4433 9.635520 TGACCAAGTTTAACGAAAAACAAATAA 57.364 25.926 15.94 0.26 40.97 1.40
3372 4434 9.635520 TTGACCAAGTTTAACGAAAAACAAATA 57.364 25.926 15.94 0.48 40.97 1.40
3373 4435 8.535690 TTGACCAAGTTTAACGAAAAACAAAT 57.464 26.923 15.94 3.66 40.97 2.32
3374 4436 7.941795 TTGACCAAGTTTAACGAAAAACAAA 57.058 28.000 15.94 2.92 40.97 2.83
3375 4437 7.437267 TGTTTGACCAAGTTTAACGAAAAACAA 59.563 29.630 15.94 0.00 40.97 2.83
3376 4438 6.921857 TGTTTGACCAAGTTTAACGAAAAACA 59.078 30.769 15.94 0.00 40.97 2.83
3377 4439 7.335861 TGTTTGACCAAGTTTAACGAAAAAC 57.664 32.000 8.64 8.64 39.22 2.43
3378 4440 9.804758 ATATGTTTGACCAAGTTTAACGAAAAA 57.195 25.926 0.00 0.00 0.00 1.94
3380 4442 9.881529 GTATATGTTTGACCAAGTTTAACGAAA 57.118 29.630 0.00 0.00 0.00 3.46
3381 4443 9.053840 TGTATATGTTTGACCAAGTTTAACGAA 57.946 29.630 0.00 0.00 0.00 3.85
3382 4444 8.604640 TGTATATGTTTGACCAAGTTTAACGA 57.395 30.769 0.00 0.00 0.00 3.85
3383 4445 9.834628 ATTGTATATGTTTGACCAAGTTTAACG 57.165 29.630 0.00 0.00 0.00 3.18
3425 4487 9.970395 CATTCCAACATATAGTGCATATTTTGT 57.030 29.630 0.00 0.00 36.30 2.83
3426 4488 9.414295 CCATTCCAACATATAGTGCATATTTTG 57.586 33.333 0.00 0.00 37.17 2.44
3427 4489 9.365906 TCCATTCCAACATATAGTGCATATTTT 57.634 29.630 0.00 0.00 0.00 1.82
3428 4490 8.938801 TCCATTCCAACATATAGTGCATATTT 57.061 30.769 0.00 0.00 0.00 1.40
3429 4491 7.613022 CCTCCATTCCAACATATAGTGCATATT 59.387 37.037 0.00 0.00 0.00 1.28
3430 4492 7.037370 TCCTCCATTCCAACATATAGTGCATAT 60.037 37.037 0.00 0.00 0.00 1.78
3431 4493 6.272090 TCCTCCATTCCAACATATAGTGCATA 59.728 38.462 0.00 0.00 0.00 3.14
3432 4494 5.073554 TCCTCCATTCCAACATATAGTGCAT 59.926 40.000 0.00 0.00 0.00 3.96
3433 4495 4.411869 TCCTCCATTCCAACATATAGTGCA 59.588 41.667 0.00 0.00 0.00 4.57
3434 4496 4.973168 TCCTCCATTCCAACATATAGTGC 58.027 43.478 0.00 0.00 0.00 4.40
3435 4497 6.595682 ACTTCCTCCATTCCAACATATAGTG 58.404 40.000 0.00 0.00 0.00 2.74
3436 4498 6.831664 ACTTCCTCCATTCCAACATATAGT 57.168 37.500 0.00 0.00 0.00 2.12
3437 4499 8.597167 TGATACTTCCTCCATTCCAACATATAG 58.403 37.037 0.00 0.00 0.00 1.31
3438 4500 8.504811 TGATACTTCCTCCATTCCAACATATA 57.495 34.615 0.00 0.00 0.00 0.86
3439 4501 7.392766 TGATACTTCCTCCATTCCAACATAT 57.607 36.000 0.00 0.00 0.00 1.78
3440 4502 6.823286 TGATACTTCCTCCATTCCAACATA 57.177 37.500 0.00 0.00 0.00 2.29
3441 4503 5.715439 TGATACTTCCTCCATTCCAACAT 57.285 39.130 0.00 0.00 0.00 2.71
3442 4504 5.715439 ATGATACTTCCTCCATTCCAACA 57.285 39.130 0.00 0.00 0.00 3.33
3443 4505 7.093771 ACAAAATGATACTTCCTCCATTCCAAC 60.094 37.037 0.00 0.00 0.00 3.77
3444 4506 6.953520 ACAAAATGATACTTCCTCCATTCCAA 59.046 34.615 0.00 0.00 0.00 3.53
3445 4507 6.493166 ACAAAATGATACTTCCTCCATTCCA 58.507 36.000 0.00 0.00 0.00 3.53
3446 4508 7.229506 CCTACAAAATGATACTTCCTCCATTCC 59.770 40.741 0.00 0.00 0.00 3.01
3447 4509 7.229506 CCCTACAAAATGATACTTCCTCCATTC 59.770 40.741 0.00 0.00 0.00 2.67
3448 4510 7.062957 CCCTACAAAATGATACTTCCTCCATT 58.937 38.462 0.00 0.00 0.00 3.16
3449 4511 6.389869 TCCCTACAAAATGATACTTCCTCCAT 59.610 38.462 0.00 0.00 0.00 3.41
3450 4512 5.729229 TCCCTACAAAATGATACTTCCTCCA 59.271 40.000 0.00 0.00 0.00 3.86
3451 4513 6.056236 GTCCCTACAAAATGATACTTCCTCC 58.944 44.000 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.