Multiple sequence alignment - TraesCS5B01G167600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G167600 chr5B 100.000 4608 0 0 1 4608 309881785 309886392 0.000000e+00 8510.0
1 TraesCS5B01G167600 chr5B 87.716 1099 121 9 796 1890 312592358 312593446 0.000000e+00 1269.0
2 TraesCS5B01G167600 chr5B 81.513 476 77 5 1411 1885 278863716 278864181 9.360000e-102 381.0
3 TraesCS5B01G167600 chr5B 83.824 272 34 5 1960 2229 312593460 312593723 2.750000e-62 250.0
4 TraesCS5B01G167600 chr5B 75.130 575 90 25 2744 3303 312594330 312594866 2.160000e-53 220.0
5 TraesCS5B01G167600 chr5B 95.082 61 3 0 1964 2024 278864203 278864263 3.790000e-16 97.1
6 TraesCS5B01G167600 chr5D 95.861 2440 76 12 1214 3646 275167501 275169922 0.000000e+00 3923.0
7 TraesCS5B01G167600 chr5D 86.319 1111 128 11 784 1890 275404628 275405718 0.000000e+00 1188.0
8 TraesCS5B01G167600 chr5D 85.145 1104 143 12 785 1885 245715488 245716573 0.000000e+00 1110.0
9 TraesCS5B01G167600 chr5D 94.059 505 16 3 618 1108 275166574 275167078 0.000000e+00 754.0
10 TraesCS5B01G167600 chr5D 91.346 520 22 13 3659 4177 275169907 275170404 0.000000e+00 689.0
11 TraesCS5B01G167600 chr5D 91.346 416 32 4 4195 4608 275171821 275172234 2.410000e-157 566.0
12 TraesCS5B01G167600 chr5D 74.569 928 162 46 2744 3645 275406571 275407450 5.710000e-89 339.0
13 TraesCS5B01G167600 chr5D 82.895 304 38 10 1960 2259 275405732 275406025 1.270000e-65 261.0
14 TraesCS5B01G167600 chr5D 91.489 188 16 0 1964 2151 245716595 245716782 4.570000e-65 259.0
15 TraesCS5B01G167600 chr5D 88.265 196 19 4 130 324 275165587 275165779 9.970000e-57 231.0
16 TraesCS5B01G167600 chr5D 87.143 140 18 0 471 610 411224896 411224757 4.770000e-35 159.0
17 TraesCS5B01G167600 chr5D 87.903 124 12 3 4162 4282 275171745 275171868 4.810000e-30 143.0
18 TraesCS5B01G167600 chr5A 93.757 945 42 13 2710 3646 364191513 364192448 0.000000e+00 1402.0
19 TraesCS5B01G167600 chr5A 86.984 1114 125 13 784 1890 364349394 364350494 0.000000e+00 1236.0
20 TraesCS5B01G167600 chr5A 91.404 826 56 5 634 1445 364136675 364137499 0.000000e+00 1118.0
21 TraesCS5B01G167600 chr5A 84.816 1113 151 11 785 1895 329693272 329694368 0.000000e+00 1103.0
22 TraesCS5B01G167600 chr5A 86.715 956 100 16 3659 4608 364192433 364193367 0.000000e+00 1037.0
23 TraesCS5B01G167600 chr5A 93.186 499 34 0 1438 1936 364147229 364147727 0.000000e+00 734.0
24 TraesCS5B01G167600 chr5A 93.145 496 24 4 1931 2417 364167417 364167911 0.000000e+00 719.0
25 TraesCS5B01G167600 chr5A 94.178 292 15 1 2419 2708 364181411 364181702 1.180000e-120 444.0
26 TraesCS5B01G167600 chr5A 83.067 313 34 7 1964 2259 329694380 329694690 2.730000e-67 267.0
27 TraesCS5B01G167600 chr5A 82.237 304 40 10 1960 2259 364350508 364350801 2.750000e-62 250.0
28 TraesCS5B01G167600 chr1B 88.587 184 21 0 2 185 671618000 671618183 1.670000e-54 224.0
29 TraesCS5B01G167600 chr1B 86.957 184 24 0 2 185 672123031 672122848 1.680000e-49 207.0
30 TraesCS5B01G167600 chr3A 89.266 177 19 0 1 177 578955554 578955378 6.000000e-54 222.0
31 TraesCS5B01G167600 chr6A 86.631 187 25 0 3 189 223563337 223563523 1.680000e-49 207.0
32 TraesCS5B01G167600 chr6D 85.227 176 26 0 1 176 389575996 389576171 1.020000e-41 182.0
33 TraesCS5B01G167600 chr4D 86.395 147 20 0 471 617 128772949 128773095 1.330000e-35 161.0
34 TraesCS5B01G167600 chr3B 85.161 155 23 0 1 155 664935091 664935245 4.770000e-35 159.0
35 TraesCS5B01G167600 chr2D 88.800 125 13 1 3771 3895 572792826 572792703 7.990000e-33 152.0
36 TraesCS5B01G167600 chr2A 88.800 125 12 2 3773 3896 711981329 711981206 7.990000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G167600 chr5B 309881785 309886392 4607 False 8510.000000 8510 100.000000 1 4608 1 chr5B.!!$F1 4607
1 TraesCS5B01G167600 chr5B 312592358 312594866 2508 False 579.666667 1269 82.223333 796 3303 3 chr5B.!!$F3 2507
2 TraesCS5B01G167600 chr5B 278863716 278864263 547 False 239.050000 381 88.297500 1411 2024 2 chr5B.!!$F2 613
3 TraesCS5B01G167600 chr5D 275165587 275172234 6647 False 1051.000000 3923 91.463333 130 4608 6 chr5D.!!$F2 4478
4 TraesCS5B01G167600 chr5D 245715488 245716782 1294 False 684.500000 1110 88.317000 785 2151 2 chr5D.!!$F1 1366
5 TraesCS5B01G167600 chr5D 275404628 275407450 2822 False 596.000000 1188 81.261000 784 3645 3 chr5D.!!$F3 2861
6 TraesCS5B01G167600 chr5A 364191513 364193367 1854 False 1219.500000 1402 90.236000 2710 4608 2 chr5A.!!$F6 1898
7 TraesCS5B01G167600 chr5A 364136675 364137499 824 False 1118.000000 1118 91.404000 634 1445 1 chr5A.!!$F1 811
8 TraesCS5B01G167600 chr5A 364349394 364350801 1407 False 743.000000 1236 84.610500 784 2259 2 chr5A.!!$F7 1475
9 TraesCS5B01G167600 chr5A 329693272 329694690 1418 False 685.000000 1103 83.941500 785 2259 2 chr5A.!!$F5 1474

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
597 1269 0.034616 ACCTCAGCTGCTCAGTCAAC 59.965 55.000 9.47 0.0 0.00 3.18 F
724 1396 0.820891 CGATTGGGGATGCCCTTCTG 60.821 60.000 24.41 12.1 44.66 3.02 F
1671 2676 1.448013 GTTCTCCTACCTGCACGGC 60.448 63.158 2.50 0.0 35.61 5.68 F
2646 3741 0.250234 ATCCCACCATGTCACTGTCG 59.750 55.000 0.00 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2151 3156 1.219213 AGGAGAGGGATGTACTCTGGG 59.781 57.143 0.00 0.0 44.89 4.45 R
2245 3267 1.490574 ACTAGCCTACTCCAAGCAGG 58.509 55.000 0.00 0.0 39.47 4.85 R
3081 4294 1.207329 AGTAAAGGTCACATCGAGGGC 59.793 52.381 0.69 0.0 0.00 5.19 R
4383 7027 0.035152 ATGCGAATTCCACTGCCAGA 60.035 50.000 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.582444 GCTATCATGAGCGTTGACAAG 57.418 47.619 0.09 0.00 31.57 3.16
25 26 3.190079 GCTATCATGAGCGTTGACAAGA 58.810 45.455 0.09 0.00 31.57 3.02
26 27 3.000724 GCTATCATGAGCGTTGACAAGAC 59.999 47.826 0.09 0.00 31.57 3.01
27 28 1.795768 TCATGAGCGTTGACAAGACC 58.204 50.000 0.00 0.00 0.00 3.85
28 29 1.069978 TCATGAGCGTTGACAAGACCA 59.930 47.619 0.00 0.00 0.00 4.02
29 30 1.872952 CATGAGCGTTGACAAGACCAA 59.127 47.619 0.00 0.00 0.00 3.67
30 31 1.295792 TGAGCGTTGACAAGACCAAC 58.704 50.000 0.00 0.00 40.19 3.77
31 32 1.295792 GAGCGTTGACAAGACCAACA 58.704 50.000 0.00 0.00 42.83 3.33
32 33 1.873591 GAGCGTTGACAAGACCAACAT 59.126 47.619 0.00 0.00 42.83 2.71
33 34 1.603802 AGCGTTGACAAGACCAACATG 59.396 47.619 0.00 0.00 42.83 3.21
34 35 1.333619 GCGTTGACAAGACCAACATGT 59.666 47.619 0.00 0.00 42.83 3.21
35 36 2.602217 GCGTTGACAAGACCAACATGTC 60.602 50.000 0.00 0.00 44.36 3.06
36 37 2.032030 CGTTGACAAGACCAACATGTCC 60.032 50.000 0.00 0.00 43.74 4.02
37 38 3.214328 GTTGACAAGACCAACATGTCCT 58.786 45.455 0.00 0.00 43.74 3.85
38 39 3.576078 TGACAAGACCAACATGTCCTT 57.424 42.857 0.00 0.00 43.74 3.36
39 40 3.213506 TGACAAGACCAACATGTCCTTG 58.786 45.455 19.63 19.63 43.74 3.61
40 41 3.118075 TGACAAGACCAACATGTCCTTGA 60.118 43.478 24.33 10.17 43.74 3.02
41 42 3.882888 GACAAGACCAACATGTCCTTGAA 59.117 43.478 24.33 0.00 40.12 2.69
42 43 3.885297 ACAAGACCAACATGTCCTTGAAG 59.115 43.478 24.33 8.79 35.83 3.02
43 44 4.136796 CAAGACCAACATGTCCTTGAAGA 58.863 43.478 17.84 0.00 35.83 2.87
44 45 4.013267 AGACCAACATGTCCTTGAAGAG 57.987 45.455 0.00 0.00 35.83 2.85
45 46 3.648067 AGACCAACATGTCCTTGAAGAGA 59.352 43.478 0.00 0.00 35.83 3.10
46 47 4.103153 AGACCAACATGTCCTTGAAGAGAA 59.897 41.667 0.00 0.00 35.83 2.87
47 48 4.792068 ACCAACATGTCCTTGAAGAGAAA 58.208 39.130 0.00 0.00 0.00 2.52
48 49 5.388654 ACCAACATGTCCTTGAAGAGAAAT 58.611 37.500 0.00 0.00 0.00 2.17
49 50 6.542821 ACCAACATGTCCTTGAAGAGAAATA 58.457 36.000 0.00 0.00 0.00 1.40
50 51 7.177878 ACCAACATGTCCTTGAAGAGAAATAT 58.822 34.615 0.00 0.00 0.00 1.28
51 52 7.671398 ACCAACATGTCCTTGAAGAGAAATATT 59.329 33.333 0.00 0.00 0.00 1.28
52 53 8.526147 CCAACATGTCCTTGAAGAGAAATATTT 58.474 33.333 0.00 0.00 0.00 1.40
53 54 9.350357 CAACATGTCCTTGAAGAGAAATATTTG 57.650 33.333 5.17 0.00 0.00 2.32
54 55 8.059798 ACATGTCCTTGAAGAGAAATATTTGG 57.940 34.615 5.17 0.00 0.00 3.28
55 56 7.671398 ACATGTCCTTGAAGAGAAATATTTGGT 59.329 33.333 5.17 0.00 0.00 3.67
56 57 8.526147 CATGTCCTTGAAGAGAAATATTTGGTT 58.474 33.333 5.17 0.00 0.00 3.67
57 58 8.110860 TGTCCTTGAAGAGAAATATTTGGTTC 57.889 34.615 5.17 6.19 0.00 3.62
58 59 7.094805 TGTCCTTGAAGAGAAATATTTGGTTCG 60.095 37.037 5.17 0.00 0.00 3.95
59 60 6.940298 TCCTTGAAGAGAAATATTTGGTTCGT 59.060 34.615 5.17 0.00 0.00 3.85
60 61 7.023575 CCTTGAAGAGAAATATTTGGTTCGTG 58.976 38.462 5.17 3.22 0.00 4.35
61 62 7.094805 CCTTGAAGAGAAATATTTGGTTCGTGA 60.095 37.037 5.17 0.00 0.00 4.35
62 63 7.737972 TGAAGAGAAATATTTGGTTCGTGAA 57.262 32.000 5.17 0.00 0.00 3.18
63 64 7.581476 TGAAGAGAAATATTTGGTTCGTGAAC 58.419 34.615 5.17 4.15 40.45 3.18
75 76 1.860676 TCGTGAACCGACAAAAGGAG 58.139 50.000 0.00 0.00 41.60 3.69
76 77 1.409790 TCGTGAACCGACAAAAGGAGA 59.590 47.619 0.00 0.00 41.60 3.71
77 78 2.036733 TCGTGAACCGACAAAAGGAGAT 59.963 45.455 0.00 0.00 41.60 2.75
78 79 2.157668 CGTGAACCGACAAAAGGAGATG 59.842 50.000 0.00 0.00 39.56 2.90
79 80 3.139077 GTGAACCGACAAAAGGAGATGT 58.861 45.455 0.00 0.00 0.00 3.06
80 81 3.564225 GTGAACCGACAAAAGGAGATGTT 59.436 43.478 0.00 0.00 0.00 2.71
81 82 3.813166 TGAACCGACAAAAGGAGATGTTC 59.187 43.478 0.00 0.00 33.32 3.18
82 83 2.413837 ACCGACAAAAGGAGATGTTCG 58.586 47.619 0.00 0.00 0.00 3.95
83 84 2.036733 ACCGACAAAAGGAGATGTTCGA 59.963 45.455 0.00 0.00 0.00 3.71
84 85 2.668457 CCGACAAAAGGAGATGTTCGAG 59.332 50.000 0.00 0.00 0.00 4.04
85 86 2.092838 CGACAAAAGGAGATGTTCGAGC 59.907 50.000 0.00 0.00 0.00 5.03
86 87 3.067106 GACAAAAGGAGATGTTCGAGCA 58.933 45.455 3.86 3.86 0.00 4.26
87 88 3.476552 ACAAAAGGAGATGTTCGAGCAA 58.523 40.909 5.91 0.00 0.00 3.91
88 89 3.499918 ACAAAAGGAGATGTTCGAGCAAG 59.500 43.478 5.91 0.00 0.00 4.01
89 90 3.685139 AAAGGAGATGTTCGAGCAAGA 57.315 42.857 5.91 0.00 0.00 3.02
90 91 2.663826 AGGAGATGTTCGAGCAAGAC 57.336 50.000 5.91 1.35 0.00 3.01
91 92 1.135257 AGGAGATGTTCGAGCAAGACG 60.135 52.381 5.91 0.00 0.00 4.18
92 93 1.272781 GAGATGTTCGAGCAAGACGG 58.727 55.000 5.91 0.00 0.00 4.79
93 94 0.737715 AGATGTTCGAGCAAGACGGC 60.738 55.000 5.91 0.00 0.00 5.68
94 95 1.696832 GATGTTCGAGCAAGACGGCC 61.697 60.000 5.91 0.00 0.00 6.13
95 96 2.048127 GTTCGAGCAAGACGGCCT 60.048 61.111 0.00 0.00 0.00 5.19
96 97 2.048222 TTCGAGCAAGACGGCCTG 60.048 61.111 0.00 0.00 0.00 4.85
97 98 2.570284 TTCGAGCAAGACGGCCTGA 61.570 57.895 0.00 0.00 0.00 3.86
98 99 2.048222 CGAGCAAGACGGCCTGAA 60.048 61.111 0.00 0.00 0.00 3.02
99 100 2.383527 CGAGCAAGACGGCCTGAAC 61.384 63.158 0.00 0.00 0.00 3.18
100 101 1.004440 GAGCAAGACGGCCTGAACT 60.004 57.895 0.00 0.00 0.00 3.01
101 102 0.246635 GAGCAAGACGGCCTGAACTA 59.753 55.000 0.00 0.00 0.00 2.24
102 103 0.247736 AGCAAGACGGCCTGAACTAG 59.752 55.000 0.00 0.00 0.00 2.57
110 111 4.818314 CCTGAACTAGGGAGGCCT 57.182 61.111 3.86 3.86 43.33 5.19
111 112 2.522271 CCTGAACTAGGGAGGCCTC 58.478 63.158 25.59 25.59 43.33 4.70
112 113 1.395826 CCTGAACTAGGGAGGCCTCG 61.396 65.000 26.36 14.89 43.33 4.63
113 114 0.395862 CTGAACTAGGGAGGCCTCGA 60.396 60.000 26.36 13.10 0.00 4.04
114 115 0.683504 TGAACTAGGGAGGCCTCGAC 60.684 60.000 26.36 20.80 0.00 4.20
115 116 1.381463 AACTAGGGAGGCCTCGACC 60.381 63.158 26.36 21.83 0.00 4.79
116 117 2.907917 CTAGGGAGGCCTCGACCG 60.908 72.222 26.36 11.15 33.69 4.79
117 118 3.717924 CTAGGGAGGCCTCGACCGT 62.718 68.421 26.36 17.05 33.69 4.83
120 121 3.379445 GGAGGCCTCGACCGTGAA 61.379 66.667 26.36 0.00 33.69 3.18
121 122 2.126031 GAGGCCTCGACCGTGAAC 60.126 66.667 19.06 0.00 33.69 3.18
122 123 2.600769 AGGCCTCGACCGTGAACT 60.601 61.111 0.00 0.00 33.69 3.01
123 124 1.303888 AGGCCTCGACCGTGAACTA 60.304 57.895 0.00 0.00 33.69 2.24
124 125 0.683504 AGGCCTCGACCGTGAACTAT 60.684 55.000 0.00 0.00 33.69 2.12
125 126 0.527817 GGCCTCGACCGTGAACTATG 60.528 60.000 0.00 0.00 0.00 2.23
126 127 0.527817 GCCTCGACCGTGAACTATGG 60.528 60.000 0.00 0.00 41.55 2.74
127 128 0.527817 CCTCGACCGTGAACTATGGC 60.528 60.000 0.00 0.00 39.21 4.40
128 129 0.527817 CTCGACCGTGAACTATGGCC 60.528 60.000 0.00 0.00 39.21 5.36
141 142 5.184864 TGAACTATGGCCGTTCATTTTGAAT 59.815 36.000 17.62 0.00 44.03 2.57
142 143 4.997565 ACTATGGCCGTTCATTTTGAATG 58.002 39.130 0.77 3.06 41.72 2.67
146 147 2.352617 GGCCGTTCATTTTGAATGCTGA 60.353 45.455 11.77 0.00 40.95 4.26
157 158 1.347378 TGAATGCTGACTAGTGTGCCA 59.653 47.619 0.00 0.00 0.00 4.92
158 159 2.224499 TGAATGCTGACTAGTGTGCCAA 60.224 45.455 0.00 0.00 0.00 4.52
173 174 1.300080 CCAACCGCTGGCTTTGTTG 60.300 57.895 10.37 10.37 38.76 3.33
174 175 1.437160 CAACCGCTGGCTTTGTTGT 59.563 52.632 9.61 0.00 34.76 3.32
175 176 0.594796 CAACCGCTGGCTTTGTTGTC 60.595 55.000 9.61 0.00 34.76 3.18
176 177 1.034838 AACCGCTGGCTTTGTTGTCA 61.035 50.000 0.00 0.00 0.00 3.58
177 178 1.283793 CCGCTGGCTTTGTTGTCAG 59.716 57.895 0.00 0.00 42.10 3.51
212 213 3.994392 GACTTGATCGTTTTGTAGGCTGA 59.006 43.478 0.00 0.00 0.00 4.26
227 228 2.094675 GGCTGACATATGTTTGCCTGT 58.905 47.619 29.85 3.84 40.76 4.00
248 250 1.717937 CTGCATGAACTGTAGCCGC 59.282 57.895 0.00 0.00 30.48 6.53
271 273 1.139734 CGCTGGCATGAGACTACGT 59.860 57.895 0.00 0.00 0.00 3.57
276 278 0.818296 GGCATGAGACTACGTCCACT 59.182 55.000 0.00 0.00 32.18 4.00
301 303 1.169661 ACTTTTGCATGCGGTCGGAA 61.170 50.000 14.09 0.00 0.00 4.30
328 354 3.474806 CCGATATGCCGGCGAATC 58.525 61.111 23.90 23.96 43.25 2.52
339 365 0.179200 CGGCGAATCCAGAAAAACGG 60.179 55.000 0.00 0.00 34.01 4.44
360 386 1.301479 GGACGCCGTCCCATTATCC 60.301 63.158 25.64 0.00 46.19 2.59
364 390 1.975680 ACGCCGTCCCATTATCCTATT 59.024 47.619 0.00 0.00 0.00 1.73
365 391 2.289444 ACGCCGTCCCATTATCCTATTG 60.289 50.000 0.00 0.00 0.00 1.90
370 396 5.373222 CCGTCCCATTATCCTATTGAAACA 58.627 41.667 0.00 0.00 0.00 2.83
384 410 8.141268 TCCTATTGAAACAGACAAAATCCAAAC 58.859 33.333 0.00 0.00 0.00 2.93
388 414 7.969536 TGAAACAGACAAAATCCAAACAAAA 57.030 28.000 0.00 0.00 0.00 2.44
391 417 5.715070 ACAGACAAAATCCAAACAAAACGA 58.285 33.333 0.00 0.00 0.00 3.85
392 418 5.804979 ACAGACAAAATCCAAACAAAACGAG 59.195 36.000 0.00 0.00 0.00 4.18
398 424 0.378962 CCAAACAAAACGAGCGTCCA 59.621 50.000 0.00 0.00 0.00 4.02
401 427 3.112580 CAAACAAAACGAGCGTCCATTT 58.887 40.909 0.00 0.00 0.00 2.32
403 429 1.001815 ACAAAACGAGCGTCCATTTGG 60.002 47.619 17.55 2.12 35.77 3.28
406 432 0.536460 AACGAGCGTCCATTTGGGTT 60.536 50.000 0.00 0.00 38.11 4.11
407 433 1.234615 ACGAGCGTCCATTTGGGTTG 61.235 55.000 0.00 0.00 38.11 3.77
411 437 1.081509 CGTCCATTTGGGTTGTGCG 60.082 57.895 0.00 0.00 38.11 5.34
414 440 0.387202 TCCATTTGGGTTGTGCGTTG 59.613 50.000 0.00 0.00 38.11 4.10
420 1092 1.178276 TGGGTTGTGCGTTGAAGTTT 58.822 45.000 0.00 0.00 0.00 2.66
423 1095 1.469079 GGTTGTGCGTTGAAGTTTGCT 60.469 47.619 0.00 0.00 0.00 3.91
431 1103 3.364068 GCGTTGAAGTTTGCTTAGGACTC 60.364 47.826 0.00 0.00 34.61 3.36
437 1109 3.100671 AGTTTGCTTAGGACTCGAGGAT 58.899 45.455 18.41 4.42 0.00 3.24
438 1110 3.515901 AGTTTGCTTAGGACTCGAGGATT 59.484 43.478 18.41 3.71 0.00 3.01
452 1124 1.936547 GAGGATTTGTCAGCGGATGTC 59.063 52.381 0.00 0.00 0.00 3.06
453 1125 1.556911 AGGATTTGTCAGCGGATGTCT 59.443 47.619 0.00 0.00 0.00 3.41
454 1126 1.667724 GGATTTGTCAGCGGATGTCTG 59.332 52.381 0.00 0.00 0.00 3.51
462 1134 4.758251 CGGATGTCTGCGGCACCA 62.758 66.667 0.00 0.00 31.84 4.17
463 1135 2.359850 GGATGTCTGCGGCACCAA 60.360 61.111 0.00 0.00 0.00 3.67
464 1136 1.971167 GGATGTCTGCGGCACCAAA 60.971 57.895 0.00 0.00 0.00 3.28
465 1137 1.523154 GGATGTCTGCGGCACCAAAA 61.523 55.000 0.00 0.00 0.00 2.44
466 1138 0.313672 GATGTCTGCGGCACCAAAAA 59.686 50.000 0.00 0.00 0.00 1.94
467 1139 0.314935 ATGTCTGCGGCACCAAAAAG 59.685 50.000 0.00 0.00 0.00 2.27
468 1140 0.749818 TGTCTGCGGCACCAAAAAGA 60.750 50.000 0.00 0.00 0.00 2.52
469 1141 0.383949 GTCTGCGGCACCAAAAAGAA 59.616 50.000 0.00 0.00 0.00 2.52
470 1142 1.107114 TCTGCGGCACCAAAAAGAAA 58.893 45.000 0.00 0.00 0.00 2.52
471 1143 1.478510 TCTGCGGCACCAAAAAGAAAA 59.521 42.857 0.00 0.00 0.00 2.29
472 1144 2.093973 TCTGCGGCACCAAAAAGAAAAA 60.094 40.909 0.00 0.00 0.00 1.94
490 1162 1.632589 AAATGAGACCAACCAAGGGC 58.367 50.000 0.00 0.00 36.73 5.19
495 1167 2.957060 GACCAACCAAGGGCTAACC 58.043 57.895 0.00 0.00 40.67 2.85
510 1182 3.487563 CTAACCCTCGTTGGCATTTTC 57.512 47.619 0.00 0.00 33.17 2.29
511 1183 1.995376 AACCCTCGTTGGCATTTTCT 58.005 45.000 0.00 0.00 0.00 2.52
512 1184 1.995376 ACCCTCGTTGGCATTTTCTT 58.005 45.000 0.00 0.00 0.00 2.52
513 1185 3.149005 ACCCTCGTTGGCATTTTCTTA 57.851 42.857 0.00 0.00 0.00 2.10
514 1186 3.697166 ACCCTCGTTGGCATTTTCTTAT 58.303 40.909 0.00 0.00 0.00 1.73
515 1187 4.850680 ACCCTCGTTGGCATTTTCTTATA 58.149 39.130 0.00 0.00 0.00 0.98
516 1188 5.258051 ACCCTCGTTGGCATTTTCTTATAA 58.742 37.500 0.00 0.00 0.00 0.98
517 1189 5.712917 ACCCTCGTTGGCATTTTCTTATAAA 59.287 36.000 0.00 0.00 0.00 1.40
518 1190 6.209788 ACCCTCGTTGGCATTTTCTTATAAAA 59.790 34.615 0.00 0.00 0.00 1.52
519 1191 6.751888 CCCTCGTTGGCATTTTCTTATAAAAG 59.248 38.462 0.00 0.00 0.00 2.27
520 1192 7.362574 CCCTCGTTGGCATTTTCTTATAAAAGA 60.363 37.037 0.00 0.00 40.03 2.52
532 1204 7.724305 TTCTTATAAAAGAAACTGCACGAGT 57.276 32.000 0.00 0.00 46.32 4.18
533 1205 8.821147 TTCTTATAAAAGAAACTGCACGAGTA 57.179 30.769 0.00 0.00 46.32 2.59
534 1206 8.236084 TCTTATAAAAGAAACTGCACGAGTAC 57.764 34.615 0.00 0.00 38.81 2.73
535 1207 5.857822 ATAAAAGAAACTGCACGAGTACC 57.142 39.130 0.00 0.00 33.09 3.34
536 1208 1.779569 AAGAAACTGCACGAGTACCG 58.220 50.000 0.00 2.71 45.44 4.02
537 1209 0.666577 AGAAACTGCACGAGTACCGC 60.667 55.000 0.00 0.00 43.32 5.68
538 1210 1.941476 GAAACTGCACGAGTACCGCG 61.941 60.000 0.00 0.00 43.32 6.46
545 1217 4.799473 CGAGTACCGCGCGTTCGA 62.799 66.667 29.95 7.62 38.10 3.71
546 1218 2.943034 GAGTACCGCGCGTTCGAG 60.943 66.667 29.95 15.49 38.10 4.04
547 1219 3.372676 GAGTACCGCGCGTTCGAGA 62.373 63.158 29.95 3.63 37.73 4.04
548 1220 3.236137 GTACCGCGCGTTCGAGAC 61.236 66.667 29.95 12.61 37.73 3.36
561 1233 2.883621 GAGACGGGACTCGAACCC 59.116 66.667 15.05 15.05 42.43 4.11
566 1238 2.499685 GGGACTCGAACCCGGATG 59.500 66.667 0.73 0.00 37.85 3.51
567 1239 2.056223 GGGACTCGAACCCGGATGA 61.056 63.158 0.73 0.00 37.85 2.92
568 1240 1.437986 GGACTCGAACCCGGATGAG 59.562 63.158 0.73 6.85 36.24 2.90
569 1241 1.227002 GACTCGAACCCGGATGAGC 60.227 63.158 0.73 0.00 36.24 4.26
570 1242 1.668101 GACTCGAACCCGGATGAGCT 61.668 60.000 0.73 0.00 36.24 4.09
571 1243 1.227089 CTCGAACCCGGATGAGCTG 60.227 63.158 0.73 0.00 36.24 4.24
572 1244 2.202932 CGAACCCGGATGAGCTGG 60.203 66.667 0.73 0.00 43.18 4.85
573 1245 2.514824 GAACCCGGATGAGCTGGC 60.515 66.667 0.73 0.00 42.12 4.85
574 1246 3.329542 GAACCCGGATGAGCTGGCA 62.330 63.158 0.73 0.00 42.12 4.92
575 1247 3.335356 AACCCGGATGAGCTGGCAG 62.335 63.158 10.94 10.94 42.12 4.85
595 1267 1.180907 CTACCTCAGCTGCTCAGTCA 58.819 55.000 9.47 0.00 0.00 3.41
596 1268 1.547820 CTACCTCAGCTGCTCAGTCAA 59.452 52.381 9.47 0.00 0.00 3.18
597 1269 0.034616 ACCTCAGCTGCTCAGTCAAC 59.965 55.000 9.47 0.00 0.00 3.18
598 1270 1.013005 CCTCAGCTGCTCAGTCAACG 61.013 60.000 9.47 0.00 0.00 4.10
599 1271 1.005748 TCAGCTGCTCAGTCAACGG 60.006 57.895 9.47 0.00 0.00 4.44
600 1272 2.031516 CAGCTGCTCAGTCAACGGG 61.032 63.158 0.00 0.00 0.00 5.28
601 1273 2.031163 GCTGCTCAGTCAACGGGT 59.969 61.111 0.00 0.00 0.00 5.28
602 1274 2.029844 GCTGCTCAGTCAACGGGTC 61.030 63.158 0.00 0.00 0.00 4.46
603 1275 1.734477 CTGCTCAGTCAACGGGTCG 60.734 63.158 0.00 0.00 0.00 4.79
604 1276 2.142357 CTGCTCAGTCAACGGGTCGA 62.142 60.000 0.00 0.00 0.00 4.20
605 1277 1.733399 GCTCAGTCAACGGGTCGAC 60.733 63.158 7.13 7.13 0.00 4.20
606 1278 1.442184 CTCAGTCAACGGGTCGACG 60.442 63.158 9.92 1.01 37.23 5.12
607 1279 3.103911 CAGTCAACGGGTCGACGC 61.104 66.667 21.72 21.72 37.23 5.19
608 1280 4.353437 AGTCAACGGGTCGACGCC 62.353 66.667 24.89 17.97 37.23 5.68
620 1292 4.570663 GACGCCCGGTCCTCGATG 62.571 72.222 0.00 0.00 42.43 3.84
622 1294 4.570663 CGCCCGGTCCTCGATGTC 62.571 72.222 0.00 0.00 42.43 3.06
724 1396 0.820891 CGATTGGGGATGCCCTTCTG 60.821 60.000 24.41 12.10 44.66 3.02
745 1419 2.799917 GCACAAACCAAACATGCCGTAA 60.800 45.455 0.00 0.00 0.00 3.18
974 1660 3.707640 CTCCGCCGTCTCTCCCTCT 62.708 68.421 0.00 0.00 0.00 3.69
1228 2233 2.284258 ACTCGCTCCAAGGCCTCT 60.284 61.111 5.23 0.00 0.00 3.69
1671 2676 1.448013 GTTCTCCTACCTGCACGGC 60.448 63.158 2.50 0.00 35.61 5.68
2151 3156 2.185608 GCCTTCCTCGCTCCAGAC 59.814 66.667 0.00 0.00 0.00 3.51
2245 3267 3.425193 GGATCATTTTGTGTTTCACGTGC 59.575 43.478 11.67 0.00 37.14 5.34
2270 3342 5.455872 TGCTTGGAGTAGGCTAGTATAACT 58.544 41.667 0.89 0.00 31.63 2.24
2278 3350 2.628657 AGGCTAGTATAACTTGGAGGCG 59.371 50.000 0.00 0.00 33.61 5.52
2283 3355 3.270877 AGTATAACTTGGAGGCGCAAAG 58.729 45.455 10.83 9.72 0.00 2.77
2427 3504 5.880332 GGGCATTCAATACTTGTCTGTCTTA 59.120 40.000 0.00 0.00 0.00 2.10
2503 3582 6.194796 TGATACTTCCTTAATTTGTGCTGC 57.805 37.500 0.00 0.00 0.00 5.25
2622 3703 4.585955 TCCTAGTATGCTTCGAATGGAC 57.414 45.455 0.00 0.00 0.00 4.02
2639 3734 2.301346 GGACATTGATCCCACCATGTC 58.699 52.381 0.00 0.00 38.06 3.06
2646 3741 0.250234 ATCCCACCATGTCACTGTCG 59.750 55.000 0.00 0.00 0.00 4.35
2727 3822 9.352784 CCAACATTATGTTTACATTGGTAACTG 57.647 33.333 7.97 0.00 38.77 3.16
2733 3828 4.335874 TGTTTACATTGGTAACTGCGTTGT 59.664 37.500 4.52 0.00 39.14 3.32
2791 3992 9.505995 AGTTTTGTACATTAGGTTTACGTTTTG 57.494 29.630 0.00 0.00 0.00 2.44
2792 3993 9.288124 GTTTTGTACATTAGGTTTACGTTTTGT 57.712 29.630 0.00 0.00 0.00 2.83
2805 4006 4.976224 ACGTTTTGTCTTTTAACTGCCT 57.024 36.364 0.00 0.00 0.00 4.75
2947 4152 4.667573 TGGTGCAAGTTTCATATTGGGTA 58.332 39.130 0.00 0.00 0.00 3.69
3037 4250 2.238521 CATTTGCCTTGTGGTACTGGT 58.761 47.619 0.00 0.00 35.27 4.00
3048 4261 2.304761 GTGGTACTGGTTTGGGAGATGA 59.695 50.000 0.00 0.00 0.00 2.92
3081 4294 7.687941 ATTCACATTAAGTTCCTAACTGTGG 57.312 36.000 8.91 0.00 41.91 4.17
3092 4308 0.249120 TAACTGTGGCCCTCGATGTG 59.751 55.000 0.00 0.00 0.00 3.21
3108 4324 6.097915 TCGATGTGACCTTTACTTTCTCTT 57.902 37.500 0.00 0.00 0.00 2.85
3222 4439 5.066893 ACTGGTGTCAAACATGCATATGATC 59.933 40.000 6.97 3.09 37.73 2.92
3232 4449 9.233232 CAAACATGCATATGATCATATATGTGC 57.767 33.333 28.70 26.17 41.14 4.57
3321 4544 8.635765 ATGATTTGGCTACTTTTGTCTAGAAA 57.364 30.769 0.00 0.00 0.00 2.52
3350 4573 9.822185 AGCACATTTTATTCAGTTTTCTTTTCT 57.178 25.926 0.00 0.00 0.00 2.52
3390 4613 4.398988 AGTTTGTCTGAATTGTTGCAGTCA 59.601 37.500 0.00 0.00 33.90 3.41
3437 4660 9.893305 AAAATTCTTTTACTGGTATTCACTTCG 57.107 29.630 0.00 0.00 0.00 3.79
3438 4661 8.842358 AATTCTTTTACTGGTATTCACTTCGA 57.158 30.769 0.00 0.00 0.00 3.71
3439 4662 7.884816 TTCTTTTACTGGTATTCACTTCGAG 57.115 36.000 0.00 0.00 0.00 4.04
3485 4708 4.582869 ACAGCATAGACATGAGCTTTGAA 58.417 39.130 0.00 0.00 34.61 2.69
3488 4729 6.825213 ACAGCATAGACATGAGCTTTGAATTA 59.175 34.615 0.00 0.00 34.61 1.40
3551 4792 7.867403 AGTTATATTGGTTTGTTTCAGTGCAAG 59.133 33.333 0.00 0.00 0.00 4.01
3649 4891 3.849911 TGAAGTCAGCTCTTCATTACGG 58.150 45.455 12.55 0.00 45.62 4.02
3650 4892 3.258372 TGAAGTCAGCTCTTCATTACGGT 59.742 43.478 12.55 0.00 45.62 4.83
3651 4893 3.512033 AGTCAGCTCTTCATTACGGTC 57.488 47.619 0.00 0.00 0.00 4.79
3652 4894 2.826128 AGTCAGCTCTTCATTACGGTCA 59.174 45.455 0.00 0.00 0.00 4.02
3653 4895 3.258372 AGTCAGCTCTTCATTACGGTCAA 59.742 43.478 0.00 0.00 0.00 3.18
3654 4896 3.994392 GTCAGCTCTTCATTACGGTCAAA 59.006 43.478 0.00 0.00 0.00 2.69
3655 4897 4.451096 GTCAGCTCTTCATTACGGTCAAAA 59.549 41.667 0.00 0.00 0.00 2.44
3656 4898 5.049680 GTCAGCTCTTCATTACGGTCAAAAA 60.050 40.000 0.00 0.00 0.00 1.94
3691 4933 4.566004 TCATTTCTGGGTCACTACTTTCG 58.434 43.478 0.00 0.00 0.00 3.46
3705 4947 1.000955 ACTTTCGTGCTACCACCTCAG 59.999 52.381 0.00 0.00 38.79 3.35
3751 4993 0.610232 ACCTTGACCTTCATGCCAGC 60.610 55.000 0.00 0.00 0.00 4.85
3856 5098 4.082300 TGCTTATTTTGGACGATGCATTGT 60.082 37.500 19.81 19.81 0.00 2.71
3908 5150 3.226346 TCGACTTCCGTAATGTTCTGG 57.774 47.619 0.00 0.00 39.75 3.86
3929 5171 2.932187 GCTTGCCTTGGTATTTTGCAGG 60.932 50.000 0.00 0.00 32.88 4.85
3941 5183 0.534652 TTTGCAGGTTTGGCCATTGC 60.535 50.000 6.09 15.23 40.61 3.56
3973 5215 9.906660 AATGATTGTCAAAGCTTTTATTTACGA 57.093 25.926 9.53 0.00 0.00 3.43
4111 5354 2.754552 TCCAAGCAATGATCCGGAAAAG 59.245 45.455 9.01 0.00 0.00 2.27
4173 5417 2.185004 ACAGGACAACATGCCTACAC 57.815 50.000 0.00 0.00 32.03 2.90
4177 5421 2.040278 AGGACAACATGCCTACACACAT 59.960 45.455 0.00 0.00 31.31 3.21
4179 5423 4.080356 AGGACAACATGCCTACACACATAT 60.080 41.667 0.00 0.00 31.31 1.78
4180 5424 4.273480 GGACAACATGCCTACACACATATC 59.727 45.833 0.00 0.00 0.00 1.63
4193 6794 3.560068 CACACATATCCGAAAAGGTAGCC 59.440 47.826 0.00 0.00 41.99 3.93
4282 6926 9.337396 GATATACCAGGATGTGTTTGATTGTTA 57.663 33.333 0.00 0.00 0.00 2.41
4288 6932 6.869913 CAGGATGTGTTTGATTGTTAGCATTT 59.130 34.615 0.00 0.00 0.00 2.32
4324 6968 0.320374 AAGGATGCCAAACGAGTCGA 59.680 50.000 21.50 0.00 0.00 4.20
4346 6990 3.843893 TTGCTTAGCTAGGATGCATCA 57.156 42.857 27.25 7.78 33.50 3.07
4351 6995 5.595542 TGCTTAGCTAGGATGCATCAAATTT 59.404 36.000 27.25 12.28 34.99 1.82
4378 7022 1.202031 CGCACGGTTCTTAAAGCATCC 60.202 52.381 0.00 0.00 33.03 3.51
4379 7023 2.084546 GCACGGTTCTTAAAGCATCCT 58.915 47.619 0.00 0.00 33.03 3.24
4380 7024 2.096013 GCACGGTTCTTAAAGCATCCTC 59.904 50.000 0.00 0.00 33.03 3.71
4383 7027 2.677037 CGGTTCTTAAAGCATCCTCGGT 60.677 50.000 0.00 0.00 33.03 4.69
4391 7035 3.023949 GCATCCTCGGTCTGGCAGT 62.024 63.158 15.27 0.00 0.00 4.40
4421 7065 0.184692 TGTTTCCACAGGGTGCATCA 59.815 50.000 0.00 0.00 34.93 3.07
4438 7082 2.358125 ATTGCACGCGGCTACACA 60.358 55.556 12.47 0.00 45.15 3.72
4443 7087 4.712425 ACGCGGCTACACACGGTC 62.712 66.667 12.47 0.00 0.00 4.79
4469 7113 1.684248 GCACAGGAGATGGGATGCTTT 60.684 52.381 0.00 0.00 32.10 3.51
4520 7164 1.071699 TCTTCTTTCACCACCCCTTCG 59.928 52.381 0.00 0.00 0.00 3.79
4533 7177 0.321564 CCCTTCGTTGGCACTGATGA 60.322 55.000 0.00 0.00 0.00 2.92
4534 7178 1.679944 CCCTTCGTTGGCACTGATGAT 60.680 52.381 0.00 0.00 0.00 2.45
4553 7197 2.802667 CGGCTTTGCTCGACCATCG 61.803 63.158 0.00 0.00 42.10 3.84
4562 7206 1.663379 CTCGACCATCGTGCTACCCA 61.663 60.000 0.00 0.00 41.35 4.51
4569 7213 2.213499 CATCGTGCTACCCAAATCCTC 58.787 52.381 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.728839 GTCAACGCTCATGATAGCTAGC 59.271 50.000 6.62 6.62 40.49 3.42
1 2 3.969899 TGTCAACGCTCATGATAGCTAG 58.030 45.455 0.00 0.00 40.49 3.42
2 3 4.097892 TCTTGTCAACGCTCATGATAGCTA 59.902 41.667 0.00 0.00 40.49 3.32
3 4 2.967599 TGTCAACGCTCATGATAGCT 57.032 45.000 0.00 0.00 40.49 3.32
4 5 3.000724 GTCTTGTCAACGCTCATGATAGC 59.999 47.826 0.00 0.00 39.21 2.97
5 6 3.553511 GGTCTTGTCAACGCTCATGATAG 59.446 47.826 0.00 0.00 0.00 2.08
6 7 3.056179 TGGTCTTGTCAACGCTCATGATA 60.056 43.478 0.00 0.00 0.00 2.15
7 8 2.289631 TGGTCTTGTCAACGCTCATGAT 60.290 45.455 0.00 0.00 0.00 2.45
8 9 1.069978 TGGTCTTGTCAACGCTCATGA 59.930 47.619 0.00 0.00 0.00 3.07
9 10 1.511850 TGGTCTTGTCAACGCTCATG 58.488 50.000 0.00 0.00 0.00 3.07
10 11 1.873591 GTTGGTCTTGTCAACGCTCAT 59.126 47.619 0.00 0.00 35.75 2.90
11 12 1.295792 GTTGGTCTTGTCAACGCTCA 58.704 50.000 0.00 0.00 35.75 4.26
12 13 1.295792 TGTTGGTCTTGTCAACGCTC 58.704 50.000 0.00 0.00 45.22 5.03
13 14 1.603802 CATGTTGGTCTTGTCAACGCT 59.396 47.619 0.00 0.00 45.22 5.07
14 15 1.333619 ACATGTTGGTCTTGTCAACGC 59.666 47.619 0.00 0.00 45.22 4.84
15 16 2.032030 GGACATGTTGGTCTTGTCAACG 60.032 50.000 0.00 0.00 46.41 4.10
16 17 3.214328 AGGACATGTTGGTCTTGTCAAC 58.786 45.455 0.00 0.00 46.41 3.18
17 18 3.576078 AGGACATGTTGGTCTTGTCAA 57.424 42.857 0.00 0.00 46.41 3.18
18 19 3.118075 TCAAGGACATGTTGGTCTTGTCA 60.118 43.478 20.79 9.09 46.41 3.58
19 20 3.476552 TCAAGGACATGTTGGTCTTGTC 58.523 45.455 20.79 0.00 44.95 3.18
20 21 3.576078 TCAAGGACATGTTGGTCTTGT 57.424 42.857 20.79 0.00 37.91 3.16
21 22 4.136796 TCTTCAAGGACATGTTGGTCTTG 58.863 43.478 18.02 18.02 37.91 3.02
22 23 4.103153 TCTCTTCAAGGACATGTTGGTCTT 59.897 41.667 0.00 0.00 37.91 3.01
23 24 3.648067 TCTCTTCAAGGACATGTTGGTCT 59.352 43.478 0.00 0.00 37.91 3.85
24 25 4.008074 TCTCTTCAAGGACATGTTGGTC 57.992 45.455 0.00 0.00 37.06 4.02
25 26 4.437682 TTCTCTTCAAGGACATGTTGGT 57.562 40.909 0.00 0.00 0.00 3.67
26 27 5.972107 ATTTCTCTTCAAGGACATGTTGG 57.028 39.130 0.00 0.00 0.00 3.77
27 28 9.350357 CAAATATTTCTCTTCAAGGACATGTTG 57.650 33.333 0.00 0.00 0.00 3.33
28 29 8.526147 CCAAATATTTCTCTTCAAGGACATGTT 58.474 33.333 0.00 0.00 0.00 2.71
29 30 7.671398 ACCAAATATTTCTCTTCAAGGACATGT 59.329 33.333 0.00 0.00 0.00 3.21
30 31 8.059798 ACCAAATATTTCTCTTCAAGGACATG 57.940 34.615 0.00 0.00 0.00 3.21
31 32 8.655935 AACCAAATATTTCTCTTCAAGGACAT 57.344 30.769 0.00 0.00 0.00 3.06
32 33 7.094805 CGAACCAAATATTTCTCTTCAAGGACA 60.095 37.037 0.00 0.00 0.00 4.02
33 34 7.094762 ACGAACCAAATATTTCTCTTCAAGGAC 60.095 37.037 0.00 0.00 0.00 3.85
34 35 6.940298 ACGAACCAAATATTTCTCTTCAAGGA 59.060 34.615 0.00 0.00 0.00 3.36
35 36 7.023575 CACGAACCAAATATTTCTCTTCAAGG 58.976 38.462 0.00 0.00 0.00 3.61
36 37 7.806690 TCACGAACCAAATATTTCTCTTCAAG 58.193 34.615 0.00 0.00 0.00 3.02
37 38 7.737972 TCACGAACCAAATATTTCTCTTCAA 57.262 32.000 0.00 0.00 0.00 2.69
38 39 7.581476 GTTCACGAACCAAATATTTCTCTTCA 58.419 34.615 0.00 0.00 35.36 3.02
57 58 1.860676 TCTCCTTTTGTCGGTTCACG 58.139 50.000 0.00 0.00 46.11 4.35
58 59 3.139077 ACATCTCCTTTTGTCGGTTCAC 58.861 45.455 0.00 0.00 0.00 3.18
59 60 3.485463 ACATCTCCTTTTGTCGGTTCA 57.515 42.857 0.00 0.00 0.00 3.18
60 61 3.120649 CGAACATCTCCTTTTGTCGGTTC 60.121 47.826 0.00 0.00 0.00 3.62
61 62 2.806244 CGAACATCTCCTTTTGTCGGTT 59.194 45.455 0.00 0.00 0.00 4.44
62 63 2.036733 TCGAACATCTCCTTTTGTCGGT 59.963 45.455 0.00 0.00 0.00 4.69
63 64 2.668457 CTCGAACATCTCCTTTTGTCGG 59.332 50.000 0.00 0.00 0.00 4.79
64 65 2.092838 GCTCGAACATCTCCTTTTGTCG 59.907 50.000 0.00 0.00 0.00 4.35
65 66 3.067106 TGCTCGAACATCTCCTTTTGTC 58.933 45.455 0.00 0.00 0.00 3.18
66 67 3.126001 TGCTCGAACATCTCCTTTTGT 57.874 42.857 0.00 0.00 0.00 2.83
67 68 3.748048 TCTTGCTCGAACATCTCCTTTTG 59.252 43.478 0.00 0.00 0.00 2.44
68 69 3.748568 GTCTTGCTCGAACATCTCCTTTT 59.251 43.478 0.00 0.00 0.00 2.27
69 70 3.330267 GTCTTGCTCGAACATCTCCTTT 58.670 45.455 0.00 0.00 0.00 3.11
70 71 2.672478 CGTCTTGCTCGAACATCTCCTT 60.672 50.000 0.00 0.00 0.00 3.36
71 72 1.135257 CGTCTTGCTCGAACATCTCCT 60.135 52.381 0.00 0.00 0.00 3.69
72 73 1.272781 CGTCTTGCTCGAACATCTCC 58.727 55.000 0.00 0.00 0.00 3.71
73 74 1.272781 CCGTCTTGCTCGAACATCTC 58.727 55.000 0.00 0.00 0.00 2.75
74 75 0.737715 GCCGTCTTGCTCGAACATCT 60.738 55.000 0.00 0.00 0.00 2.90
75 76 1.696832 GGCCGTCTTGCTCGAACATC 61.697 60.000 0.00 0.00 0.00 3.06
76 77 1.741770 GGCCGTCTTGCTCGAACAT 60.742 57.895 0.00 0.00 0.00 2.71
77 78 2.357034 GGCCGTCTTGCTCGAACA 60.357 61.111 0.00 0.00 0.00 3.18
78 79 2.048127 AGGCCGTCTTGCTCGAAC 60.048 61.111 0.00 0.00 0.00 3.95
79 80 2.048222 CAGGCCGTCTTGCTCGAA 60.048 61.111 0.00 0.00 0.00 3.71
80 81 2.570284 TTCAGGCCGTCTTGCTCGA 61.570 57.895 0.00 0.00 0.00 4.04
81 82 2.048222 TTCAGGCCGTCTTGCTCG 60.048 61.111 0.00 0.00 0.00 5.03
82 83 0.246635 TAGTTCAGGCCGTCTTGCTC 59.753 55.000 0.00 0.00 0.00 4.26
83 84 0.247736 CTAGTTCAGGCCGTCTTGCT 59.752 55.000 0.00 0.00 0.00 3.91
84 85 0.741221 CCTAGTTCAGGCCGTCTTGC 60.741 60.000 0.00 0.00 37.70 4.01
85 86 0.108138 CCCTAGTTCAGGCCGTCTTG 60.108 60.000 0.00 0.00 43.98 3.02
86 87 0.252103 TCCCTAGTTCAGGCCGTCTT 60.252 55.000 0.00 0.00 43.98 3.01
87 88 0.684805 CTCCCTAGTTCAGGCCGTCT 60.685 60.000 0.00 0.00 43.98 4.18
88 89 1.677637 CCTCCCTAGTTCAGGCCGTC 61.678 65.000 0.00 0.00 43.98 4.79
89 90 1.686110 CCTCCCTAGTTCAGGCCGT 60.686 63.158 0.00 0.00 43.98 5.68
90 91 3.095347 GCCTCCCTAGTTCAGGCCG 62.095 68.421 11.25 0.00 46.20 6.13
91 92 2.911928 GCCTCCCTAGTTCAGGCC 59.088 66.667 11.25 0.00 46.20 5.19
93 94 1.395826 CGAGGCCTCCCTAGTTCAGG 61.396 65.000 27.20 4.84 43.12 3.86
94 95 0.395862 TCGAGGCCTCCCTAGTTCAG 60.396 60.000 27.20 9.61 43.12 3.02
95 96 0.683504 GTCGAGGCCTCCCTAGTTCA 60.684 60.000 27.20 0.00 43.12 3.18
96 97 1.393487 GGTCGAGGCCTCCCTAGTTC 61.393 65.000 27.20 10.13 43.12 3.01
97 98 1.381463 GGTCGAGGCCTCCCTAGTT 60.381 63.158 27.20 0.00 43.12 2.24
98 99 2.279408 GGTCGAGGCCTCCCTAGT 59.721 66.667 27.20 0.00 43.12 2.57
99 100 2.907917 CGGTCGAGGCCTCCCTAG 60.908 72.222 27.20 13.05 43.12 3.02
100 101 3.736224 ACGGTCGAGGCCTCCCTA 61.736 66.667 27.20 10.11 43.12 3.53
103 104 3.379445 TTCACGGTCGAGGCCTCC 61.379 66.667 27.20 13.21 0.00 4.30
104 105 1.310933 TAGTTCACGGTCGAGGCCTC 61.311 60.000 23.79 23.79 0.00 4.70
105 106 0.683504 ATAGTTCACGGTCGAGGCCT 60.684 55.000 3.86 3.86 0.00 5.19
106 107 0.527817 CATAGTTCACGGTCGAGGCC 60.528 60.000 0.00 0.00 0.00 5.19
107 108 0.527817 CCATAGTTCACGGTCGAGGC 60.528 60.000 0.00 0.00 0.00 4.70
108 109 0.527817 GCCATAGTTCACGGTCGAGG 60.528 60.000 0.00 0.00 0.00 4.63
109 110 0.527817 GGCCATAGTTCACGGTCGAG 60.528 60.000 0.00 0.00 0.00 4.04
110 111 1.514087 GGCCATAGTTCACGGTCGA 59.486 57.895 0.00 0.00 0.00 4.20
111 112 1.876714 CGGCCATAGTTCACGGTCG 60.877 63.158 2.24 0.00 42.13 4.79
112 113 0.390735 AACGGCCATAGTTCACGGTC 60.391 55.000 2.24 0.00 0.00 4.79
113 114 0.390735 GAACGGCCATAGTTCACGGT 60.391 55.000 14.88 0.00 45.21 4.83
114 115 2.380081 GAACGGCCATAGTTCACGG 58.620 57.895 14.88 0.00 45.21 4.94
118 119 4.695217 TCAAAATGAACGGCCATAGTTC 57.305 40.909 13.37 13.37 45.85 3.01
119 120 5.410067 CATTCAAAATGAACGGCCATAGTT 58.590 37.500 2.24 0.00 39.45 2.24
120 121 4.677779 GCATTCAAAATGAACGGCCATAGT 60.678 41.667 2.24 0.00 39.45 2.12
121 122 3.798337 GCATTCAAAATGAACGGCCATAG 59.202 43.478 2.24 0.00 39.45 2.23
122 123 3.446873 AGCATTCAAAATGAACGGCCATA 59.553 39.130 2.24 0.00 39.45 2.74
123 124 2.234414 AGCATTCAAAATGAACGGCCAT 59.766 40.909 2.24 0.00 39.45 4.40
124 125 1.617850 AGCATTCAAAATGAACGGCCA 59.382 42.857 2.24 0.00 39.45 5.36
125 126 1.994779 CAGCATTCAAAATGAACGGCC 59.005 47.619 12.30 0.00 39.45 6.13
126 127 2.663119 GTCAGCATTCAAAATGAACGGC 59.337 45.455 3.91 9.36 39.45 5.68
127 128 4.164822 AGTCAGCATTCAAAATGAACGG 57.835 40.909 3.91 0.00 39.45 4.44
128 129 5.791974 CACTAGTCAGCATTCAAAATGAACG 59.208 40.000 3.91 0.00 39.45 3.95
136 137 2.224499 TGGCACACTAGTCAGCATTCAA 60.224 45.455 15.68 0.00 0.00 2.69
141 142 0.250295 GGTTGGCACACTAGTCAGCA 60.250 55.000 15.68 2.51 39.29 4.41
142 143 1.291877 CGGTTGGCACACTAGTCAGC 61.292 60.000 7.39 7.39 39.29 4.26
157 158 1.034838 TGACAACAAAGCCAGCGGTT 61.035 50.000 0.00 0.00 0.00 4.44
158 159 1.447317 CTGACAACAAAGCCAGCGGT 61.447 55.000 0.00 0.00 0.00 5.68
170 171 1.268539 CCCAAGTTTCACGCTGACAAC 60.269 52.381 0.00 0.00 0.00 3.32
173 174 0.586802 GTCCCAAGTTTCACGCTGAC 59.413 55.000 0.00 0.00 0.00 3.51
174 175 0.468226 AGTCCCAAGTTTCACGCTGA 59.532 50.000 0.00 0.00 0.00 4.26
175 176 1.002468 CAAGTCCCAAGTTTCACGCTG 60.002 52.381 0.00 0.00 0.00 5.18
176 177 1.134220 TCAAGTCCCAAGTTTCACGCT 60.134 47.619 0.00 0.00 0.00 5.07
177 178 1.305201 TCAAGTCCCAAGTTTCACGC 58.695 50.000 0.00 0.00 0.00 5.34
178 179 2.157668 CGATCAAGTCCCAAGTTTCACG 59.842 50.000 0.00 0.00 0.00 4.35
227 228 2.754648 GCTACAGTTCATGCAGCGA 58.245 52.632 0.00 0.00 38.51 4.93
284 286 0.886938 TCTTCCGACCGCATGCAAAA 60.887 50.000 19.57 1.18 0.00 2.44
294 296 2.586357 GCCGCATCTCTTCCGACC 60.586 66.667 0.00 0.00 0.00 4.79
301 303 1.079543 GCATATCGGCCGCATCTCT 60.080 57.895 23.51 2.75 0.00 3.10
320 322 0.179200 CCGTTTTTCTGGATTCGCCG 60.179 55.000 0.00 0.00 40.66 6.46
322 324 0.456142 GGCCGTTTTTCTGGATTCGC 60.456 55.000 0.00 0.00 0.00 4.70
325 327 0.250989 TCCGGCCGTTTTTCTGGATT 60.251 50.000 26.12 0.00 33.06 3.01
328 354 2.951458 GTCCGGCCGTTTTTCTGG 59.049 61.111 26.12 5.84 0.00 3.86
350 376 7.206789 TGTCTGTTTCAATAGGATAATGGGA 57.793 36.000 0.00 0.00 0.00 4.37
358 384 7.831691 TTGGATTTTGTCTGTTTCAATAGGA 57.168 32.000 0.00 0.00 0.00 2.94
360 386 8.870160 TGTTTGGATTTTGTCTGTTTCAATAG 57.130 30.769 0.00 0.00 0.00 1.73
364 390 7.359598 CGTTTTGTTTGGATTTTGTCTGTTTCA 60.360 33.333 0.00 0.00 0.00 2.69
365 391 6.953189 CGTTTTGTTTGGATTTTGTCTGTTTC 59.047 34.615 0.00 0.00 0.00 2.78
370 396 4.803613 GCTCGTTTTGTTTGGATTTTGTCT 59.196 37.500 0.00 0.00 0.00 3.41
380 406 2.399396 ATGGACGCTCGTTTTGTTTG 57.601 45.000 0.00 0.00 0.00 2.93
384 410 1.665735 CCCAAATGGACGCTCGTTTTG 60.666 52.381 0.00 9.71 37.39 2.44
388 414 1.072505 AACCCAAATGGACGCTCGT 59.927 52.632 0.00 0.00 37.39 4.18
391 417 1.805428 GCACAACCCAAATGGACGCT 61.805 55.000 0.00 0.00 37.39 5.07
392 418 1.372872 GCACAACCCAAATGGACGC 60.373 57.895 0.00 0.00 37.39 5.19
398 424 1.754226 ACTTCAACGCACAACCCAAAT 59.246 42.857 0.00 0.00 0.00 2.32
401 427 1.135257 CAAACTTCAACGCACAACCCA 60.135 47.619 0.00 0.00 0.00 4.51
403 429 0.920664 GCAAACTTCAACGCACAACC 59.079 50.000 0.00 0.00 0.00 3.77
406 432 2.032799 CCTAAGCAAACTTCAACGCACA 59.967 45.455 0.00 0.00 37.33 4.57
407 433 2.289547 TCCTAAGCAAACTTCAACGCAC 59.710 45.455 0.00 0.00 37.33 5.34
411 437 4.056050 TCGAGTCCTAAGCAAACTTCAAC 58.944 43.478 0.00 0.00 37.33 3.18
414 440 3.056749 TCCTCGAGTCCTAAGCAAACTTC 60.057 47.826 12.31 0.00 37.33 3.01
420 1092 2.832129 ACAAATCCTCGAGTCCTAAGCA 59.168 45.455 12.31 0.00 0.00 3.91
423 1095 3.119101 GCTGACAAATCCTCGAGTCCTAA 60.119 47.826 12.31 0.00 0.00 2.69
431 1103 0.933097 CATCCGCTGACAAATCCTCG 59.067 55.000 0.00 0.00 0.00 4.63
437 1109 1.291184 CGCAGACATCCGCTGACAAA 61.291 55.000 0.00 0.00 35.39 2.83
438 1110 1.737735 CGCAGACATCCGCTGACAA 60.738 57.895 0.00 0.00 35.39 3.18
452 1124 1.933247 TTTTCTTTTTGGTGCCGCAG 58.067 45.000 0.00 0.00 0.00 5.18
453 1125 2.386661 TTTTTCTTTTTGGTGCCGCA 57.613 40.000 0.00 0.00 0.00 5.69
469 1141 2.368548 GCCCTTGGTTGGTCTCATTTTT 59.631 45.455 0.00 0.00 0.00 1.94
470 1142 1.970640 GCCCTTGGTTGGTCTCATTTT 59.029 47.619 0.00 0.00 0.00 1.82
471 1143 1.147817 AGCCCTTGGTTGGTCTCATTT 59.852 47.619 0.00 0.00 0.00 2.32
472 1144 0.779997 AGCCCTTGGTTGGTCTCATT 59.220 50.000 0.00 0.00 0.00 2.57
473 1145 1.668826 TAGCCCTTGGTTGGTCTCAT 58.331 50.000 0.00 0.00 0.00 2.90
474 1146 1.073284 GTTAGCCCTTGGTTGGTCTCA 59.927 52.381 0.00 0.00 0.00 3.27
475 1147 1.613520 GGTTAGCCCTTGGTTGGTCTC 60.614 57.143 0.00 0.00 0.00 3.36
476 1148 0.404426 GGTTAGCCCTTGGTTGGTCT 59.596 55.000 0.00 0.00 0.00 3.85
477 1149 2.957060 GGTTAGCCCTTGGTTGGTC 58.043 57.895 0.00 0.00 0.00 4.02
488 1160 0.679960 AATGCCAACGAGGGTTAGCC 60.680 55.000 0.00 0.00 39.61 3.93
489 1161 1.173913 AAATGCCAACGAGGGTTAGC 58.826 50.000 0.00 0.00 40.57 3.09
490 1162 3.081804 AGAAAATGCCAACGAGGGTTAG 58.918 45.455 0.00 0.00 38.09 2.34
491 1163 3.149005 AGAAAATGCCAACGAGGGTTA 57.851 42.857 0.00 0.00 38.09 2.85
492 1164 1.995376 AGAAAATGCCAACGAGGGTT 58.005 45.000 0.00 0.00 38.09 4.11
493 1165 1.995376 AAGAAAATGCCAACGAGGGT 58.005 45.000 0.00 0.00 38.09 4.34
494 1166 5.828299 TTATAAGAAAATGCCAACGAGGG 57.172 39.130 0.00 0.00 38.09 4.30
495 1167 7.535139 TCTTTTATAAGAAAATGCCAACGAGG 58.465 34.615 0.00 0.00 37.45 4.63
496 1168 8.964420 TTCTTTTATAAGAAAATGCCAACGAG 57.036 30.769 5.95 0.00 45.08 4.18
508 1180 7.724305 ACTCGTGCAGTTTCTTTTATAAGAA 57.276 32.000 4.45 4.45 46.07 2.52
509 1181 7.330208 GGTACTCGTGCAGTTTCTTTTATAAGA 59.670 37.037 0.00 0.00 36.23 2.10
510 1182 7.453838 GGTACTCGTGCAGTTTCTTTTATAAG 58.546 38.462 0.00 0.00 36.43 1.73
511 1183 6.089820 CGGTACTCGTGCAGTTTCTTTTATAA 59.910 38.462 0.00 0.00 36.43 0.98
512 1184 5.574055 CGGTACTCGTGCAGTTTCTTTTATA 59.426 40.000 0.00 0.00 36.43 0.98
513 1185 4.387862 CGGTACTCGTGCAGTTTCTTTTAT 59.612 41.667 0.00 0.00 36.43 1.40
514 1186 3.737266 CGGTACTCGTGCAGTTTCTTTTA 59.263 43.478 0.00 0.00 36.43 1.52
515 1187 2.542595 CGGTACTCGTGCAGTTTCTTTT 59.457 45.455 0.00 0.00 36.43 2.27
516 1188 2.132762 CGGTACTCGTGCAGTTTCTTT 58.867 47.619 0.00 0.00 36.43 2.52
517 1189 1.779569 CGGTACTCGTGCAGTTTCTT 58.220 50.000 0.00 0.00 36.43 2.52
518 1190 0.666577 GCGGTACTCGTGCAGTTTCT 60.667 55.000 0.00 0.00 41.72 2.52
519 1191 1.779683 GCGGTACTCGTGCAGTTTC 59.220 57.895 0.00 0.00 41.72 2.78
520 1192 2.019951 CGCGGTACTCGTGCAGTTT 61.020 57.895 0.00 0.00 42.62 2.66
521 1193 2.430244 CGCGGTACTCGTGCAGTT 60.430 61.111 0.00 0.00 42.62 3.16
528 1200 4.799473 TCGAACGCGCGGTACTCG 62.799 66.667 35.22 30.84 40.71 4.18
529 1201 2.943034 CTCGAACGCGCGGTACTC 60.943 66.667 35.22 21.84 37.46 2.59
530 1202 3.425713 TCTCGAACGCGCGGTACT 61.426 61.111 35.22 15.42 37.46 2.73
531 1203 3.236137 GTCTCGAACGCGCGGTAC 61.236 66.667 35.22 19.39 37.46 3.34
532 1204 4.799473 CGTCTCGAACGCGCGGTA 62.799 66.667 35.22 13.30 45.76 4.02
544 1216 2.883621 GGGTTCGAGTCCCGTCTC 59.116 66.667 11.14 0.00 39.75 3.36
549 1221 2.017559 CTCATCCGGGTTCGAGTCCC 62.018 65.000 15.18 15.18 41.41 4.46
550 1222 1.437986 CTCATCCGGGTTCGAGTCC 59.562 63.158 0.00 0.82 39.00 3.85
551 1223 1.227002 GCTCATCCGGGTTCGAGTC 60.227 63.158 0.00 0.00 39.00 3.36
552 1224 1.682684 AGCTCATCCGGGTTCGAGT 60.683 57.895 0.00 0.00 39.00 4.18
553 1225 1.227089 CAGCTCATCCGGGTTCGAG 60.227 63.158 0.00 0.00 39.00 4.04
554 1226 2.721167 CCAGCTCATCCGGGTTCGA 61.721 63.158 0.00 0.00 39.00 3.71
555 1227 2.202932 CCAGCTCATCCGGGTTCG 60.203 66.667 0.00 0.00 0.00 3.95
556 1228 2.514824 GCCAGCTCATCCGGGTTC 60.515 66.667 0.00 0.00 0.00 3.62
557 1229 3.329889 TGCCAGCTCATCCGGGTT 61.330 61.111 0.00 0.00 0.00 4.11
558 1230 3.790437 CTGCCAGCTCATCCGGGT 61.790 66.667 0.00 0.00 0.00 5.28
576 1248 1.180907 TGACTGAGCAGCTGAGGTAG 58.819 55.000 20.43 11.69 0.00 3.18
577 1249 1.273606 GTTGACTGAGCAGCTGAGGTA 59.726 52.381 20.43 0.00 0.00 3.08
578 1250 0.034616 GTTGACTGAGCAGCTGAGGT 59.965 55.000 20.43 9.42 0.00 3.85
579 1251 1.013005 CGTTGACTGAGCAGCTGAGG 61.013 60.000 20.43 6.01 0.00 3.86
580 1252 1.013005 CCGTTGACTGAGCAGCTGAG 61.013 60.000 20.43 7.43 0.00 3.35
581 1253 1.005748 CCGTTGACTGAGCAGCTGA 60.006 57.895 20.43 0.00 0.00 4.26
582 1254 2.031516 CCCGTTGACTGAGCAGCTG 61.032 63.158 10.11 10.11 0.00 4.24
583 1255 2.345244 CCCGTTGACTGAGCAGCT 59.655 61.111 0.00 0.00 0.00 4.24
584 1256 2.029844 GACCCGTTGACTGAGCAGC 61.030 63.158 0.00 0.00 0.00 5.25
585 1257 1.734477 CGACCCGTTGACTGAGCAG 60.734 63.158 0.00 0.00 0.00 4.24
586 1258 2.197605 TCGACCCGTTGACTGAGCA 61.198 57.895 0.00 0.00 0.00 4.26
587 1259 1.733399 GTCGACCCGTTGACTGAGC 60.733 63.158 3.51 0.00 40.13 4.26
588 1260 1.442184 CGTCGACCCGTTGACTGAG 60.442 63.158 10.58 0.00 40.90 3.35
589 1261 2.640989 CGTCGACCCGTTGACTGA 59.359 61.111 10.58 0.00 40.90 3.41
590 1262 3.103911 GCGTCGACCCGTTGACTG 61.104 66.667 10.58 7.77 40.90 3.51
591 1263 4.353437 GGCGTCGACCCGTTGACT 62.353 66.667 10.58 0.00 40.90 3.41
603 1275 4.570663 CATCGAGGACCGGGCGTC 62.571 72.222 20.38 20.38 41.15 5.19
605 1277 4.570663 GACATCGAGGACCGGGCG 62.571 72.222 6.32 3.96 39.14 6.13
606 1278 3.148279 AGACATCGAGGACCGGGC 61.148 66.667 6.32 0.21 39.14 6.13
607 1279 2.808315 CAGACATCGAGGACCGGG 59.192 66.667 6.32 0.00 39.14 5.73
608 1280 2.105128 GCAGACATCGAGGACCGG 59.895 66.667 3.06 0.00 39.14 5.28
609 1281 2.278206 CGCAGACATCGAGGACCG 60.278 66.667 3.06 0.00 40.25 4.79
610 1282 2.105128 CCGCAGACATCGAGGACC 59.895 66.667 3.06 0.00 0.00 4.46
611 1283 2.583593 GCCGCAGACATCGAGGAC 60.584 66.667 3.06 0.00 0.00 3.85
612 1284 3.068064 TGCCGCAGACATCGAGGA 61.068 61.111 3.06 0.00 0.00 3.71
613 1285 2.887568 GTGCCGCAGACATCGAGG 60.888 66.667 0.00 0.00 0.00 4.63
614 1286 2.887568 GGTGCCGCAGACATCGAG 60.888 66.667 0.00 0.00 0.00 4.04
615 1287 3.017771 ATGGTGCCGCAGACATCGA 62.018 57.895 0.00 0.00 0.00 3.59
616 1288 2.512286 ATGGTGCCGCAGACATCG 60.512 61.111 0.00 0.00 0.00 3.84
617 1289 1.709147 GACATGGTGCCGCAGACATC 61.709 60.000 7.36 0.00 0.00 3.06
618 1290 1.746615 GACATGGTGCCGCAGACAT 60.747 57.895 0.00 0.00 0.00 3.06
619 1291 2.358615 GACATGGTGCCGCAGACA 60.359 61.111 0.00 0.00 0.00 3.41
620 1292 2.046892 AGACATGGTGCCGCAGAC 60.047 61.111 0.00 0.00 0.00 3.51
621 1293 2.046988 CAGACATGGTGCCGCAGA 60.047 61.111 0.00 0.00 0.00 4.26
622 1294 1.968017 AACAGACATGGTGCCGCAG 60.968 57.895 0.00 0.00 0.00 5.18
699 1371 1.529010 GCATCCCCAATCGCCATGA 60.529 57.895 0.00 0.00 0.00 3.07
724 1396 0.529555 ACGGCATGTTTGGTTTGTGC 60.530 50.000 0.00 0.00 35.17 4.57
1228 2233 0.031043 TCGGACGACTCGAAAAGCAA 59.969 50.000 5.20 0.00 33.42 3.91
2151 3156 1.219213 AGGAGAGGGATGTACTCTGGG 59.781 57.143 0.00 0.00 44.89 4.45
2245 3267 1.490574 ACTAGCCTACTCCAAGCAGG 58.509 55.000 0.00 0.00 39.47 4.85
2270 3342 2.283101 ATGCCTTTGCGCCTCCAA 60.283 55.556 4.18 0.00 41.78 3.53
2298 3370 5.602978 ACTCCCTATAACCATACAAGTCCTG 59.397 44.000 0.00 0.00 0.00 3.86
2427 3504 4.141620 ACAGGACTTGTGATGAGAACTTGT 60.142 41.667 0.00 0.00 38.99 3.16
2503 3582 3.129462 ACATGTGTAGAGACGAGACCATG 59.871 47.826 0.00 0.00 35.69 3.66
2622 3703 2.686405 CAGTGACATGGTGGGATCAATG 59.314 50.000 0.00 0.00 31.72 2.82
2639 3734 2.795175 ACACCAGTTCTACGACAGTG 57.205 50.000 0.00 0.00 34.29 3.66
2646 3741 6.307318 CGTGTACTGAATAACACCAGTTCTAC 59.693 42.308 0.00 0.00 42.39 2.59
2727 3822 6.364706 TGAATTTTACAATCCATGAACAACGC 59.635 34.615 0.00 0.00 0.00 4.84
2791 3992 3.142174 AGTGAGCAGGCAGTTAAAAGAC 58.858 45.455 0.00 0.00 0.00 3.01
2792 3993 3.071602 AGAGTGAGCAGGCAGTTAAAAGA 59.928 43.478 0.00 0.00 0.00 2.52
2805 4006 2.039480 AGCAAGGAAATCAGAGTGAGCA 59.961 45.455 0.00 0.00 0.00 4.26
2971 4176 4.261411 AGATGCTGATTTCCCAGGAATT 57.739 40.909 0.00 0.00 38.01 2.17
3081 4294 1.207329 AGTAAAGGTCACATCGAGGGC 59.793 52.381 0.69 0.00 0.00 5.19
3185 4402 7.606456 TGTTTGACACCAGTAATATCCTTTCTC 59.394 37.037 0.00 0.00 0.00 2.87
3232 4449 3.751175 ACCAATAATCACACAGTGAACGG 59.249 43.478 7.81 4.36 45.96 4.44
3271 4488 3.986996 TGATTTCATGCAGTGAGGAGA 57.013 42.857 0.00 0.00 38.29 3.71
3350 4573 8.836268 AGACAAACTGACAATTACCGTATTAA 57.164 30.769 0.00 0.00 0.00 1.40
3368 4591 4.671377 TGACTGCAACAATTCAGACAAAC 58.329 39.130 0.00 0.00 33.50 2.93
3387 4610 9.878599 TTTCTCTTAAAGAATTGTCGAAATGAC 57.121 29.630 0.00 0.00 43.50 3.06
3415 4638 7.439381 ACTCGAAGTGAATACCAGTAAAAGAA 58.561 34.615 0.00 0.00 0.00 2.52
3437 4660 8.603242 TTACTGTTCAGAATTCAAACCTACTC 57.397 34.615 16.56 0.00 0.00 2.59
3438 4661 8.837389 GTTTACTGTTCAGAATTCAAACCTACT 58.163 33.333 16.56 4.29 0.00 2.57
3439 4662 8.617809 TGTTTACTGTTCAGAATTCAAACCTAC 58.382 33.333 16.56 10.13 0.00 3.18
3551 4792 4.994852 TGACACAAGTATCAGCTACCAAAC 59.005 41.667 0.00 0.00 0.00 2.93
3655 4897 5.010415 CCCAGAAATGAAGAGCTGACTTTTT 59.990 40.000 0.00 0.00 0.00 1.94
3656 4898 4.522022 CCCAGAAATGAAGAGCTGACTTTT 59.478 41.667 0.00 0.00 0.00 2.27
3657 4899 4.077822 CCCAGAAATGAAGAGCTGACTTT 58.922 43.478 0.00 0.00 0.00 2.66
3658 4900 3.073650 ACCCAGAAATGAAGAGCTGACTT 59.926 43.478 0.00 0.00 0.00 3.01
3659 4901 2.641815 ACCCAGAAATGAAGAGCTGACT 59.358 45.455 0.00 0.00 0.00 3.41
3660 4902 3.006247 GACCCAGAAATGAAGAGCTGAC 58.994 50.000 0.00 0.00 0.00 3.51
3661 4903 2.639347 TGACCCAGAAATGAAGAGCTGA 59.361 45.455 0.00 0.00 0.00 4.26
3662 4904 2.746362 GTGACCCAGAAATGAAGAGCTG 59.254 50.000 0.00 0.00 0.00 4.24
3663 4905 2.641815 AGTGACCCAGAAATGAAGAGCT 59.358 45.455 0.00 0.00 0.00 4.09
3664 4906 3.064900 AGTGACCCAGAAATGAAGAGC 57.935 47.619 0.00 0.00 0.00 4.09
3665 4907 5.413309 AGTAGTGACCCAGAAATGAAGAG 57.587 43.478 0.00 0.00 0.00 2.85
3666 4908 5.825593 AAGTAGTGACCCAGAAATGAAGA 57.174 39.130 0.00 0.00 0.00 2.87
3667 4909 5.120830 CGAAAGTAGTGACCCAGAAATGAAG 59.879 44.000 0.00 0.00 0.00 3.02
3668 4910 4.994852 CGAAAGTAGTGACCCAGAAATGAA 59.005 41.667 0.00 0.00 0.00 2.57
3669 4911 4.039973 ACGAAAGTAGTGACCCAGAAATGA 59.960 41.667 0.00 0.00 46.88 2.57
3670 4912 4.315803 ACGAAAGTAGTGACCCAGAAATG 58.684 43.478 0.00 0.00 46.88 2.32
3671 4913 4.618920 ACGAAAGTAGTGACCCAGAAAT 57.381 40.909 0.00 0.00 46.88 2.17
3691 4933 0.685097 TCAACCTGAGGTGGTAGCAC 59.315 55.000 16.75 16.75 39.83 4.40
3705 4947 0.681243 GGTTCCCCATGAGCTCAACC 60.681 60.000 22.50 18.37 0.00 3.77
3751 4993 9.309516 ACATAGCATCAAAAGATTGCTTAAATG 57.690 29.630 1.62 3.43 36.45 2.32
3908 5150 2.340337 CTGCAAAATACCAAGGCAAGC 58.660 47.619 0.00 0.00 33.58 4.01
3929 5171 0.313672 TTGACTCGCAATGGCCAAAC 59.686 50.000 10.96 0.20 36.38 2.93
3941 5183 4.675190 AGCTTTGACAATCATTGACTCG 57.325 40.909 3.79 0.00 0.00 4.18
4043 5286 7.598493 ACTTTAATAAATGGTTGTGTGCATCAC 59.402 33.333 11.13 11.13 46.31 3.06
4084 5327 3.003689 CCGGATCATTGCTTGGAACATAC 59.996 47.826 0.00 0.00 39.30 2.39
4085 5328 3.118075 TCCGGATCATTGCTTGGAACATA 60.118 43.478 0.00 0.00 39.30 2.29
4086 5329 2.026641 CCGGATCATTGCTTGGAACAT 58.973 47.619 0.00 0.00 39.30 2.71
4087 5330 1.004161 TCCGGATCATTGCTTGGAACA 59.996 47.619 0.00 0.00 0.00 3.18
4155 5399 1.806542 GTGTGTAGGCATGTTGTCCTG 59.193 52.381 0.00 0.00 34.02 3.86
4173 5417 3.804036 TGGCTACCTTTTCGGATATGTG 58.196 45.455 0.00 0.00 36.31 3.21
4177 5421 5.364446 TCAACTATGGCTACCTTTTCGGATA 59.636 40.000 0.00 0.00 36.31 2.59
4179 5423 3.516300 TCAACTATGGCTACCTTTTCGGA 59.484 43.478 0.00 0.00 36.31 4.55
4180 5424 3.869065 TCAACTATGGCTACCTTTTCGG 58.131 45.455 0.00 0.00 39.35 4.30
4324 6968 4.722220 TGATGCATCCTAGCTAAGCAAAT 58.278 39.130 23.67 0.30 38.85 2.32
4346 6990 1.104577 ACCGTGCGACCCACAAATTT 61.105 50.000 0.00 0.00 44.91 1.82
4351 6995 1.746322 TAAGAACCGTGCGACCCACA 61.746 55.000 0.00 0.00 44.91 4.17
4378 7022 0.036010 AATTCCACTGCCAGACCGAG 60.036 55.000 0.00 0.00 0.00 4.63
4379 7023 0.036388 GAATTCCACTGCCAGACCGA 60.036 55.000 0.00 0.00 0.00 4.69
4380 7024 1.361668 CGAATTCCACTGCCAGACCG 61.362 60.000 0.00 0.00 0.00 4.79
4383 7027 0.035152 ATGCGAATTCCACTGCCAGA 60.035 50.000 0.00 0.00 0.00 3.86
4421 7065 2.358125 TGTGTAGCCGCGTGCAAT 60.358 55.556 19.30 4.81 44.83 3.56
4438 7082 4.003788 CCTGTGCTTCCCGACCGT 62.004 66.667 0.00 0.00 0.00 4.83
4440 7084 1.617947 ATCTCCTGTGCTTCCCGACC 61.618 60.000 0.00 0.00 0.00 4.79
4443 7087 1.153289 CCATCTCCTGTGCTTCCCG 60.153 63.158 0.00 0.00 0.00 5.14
4469 7113 1.335132 GGCGAGGGGAGTTATGACCA 61.335 60.000 0.00 0.00 0.00 4.02
4520 7164 0.745845 AGCCGATCATCAGTGCCAAC 60.746 55.000 0.00 0.00 0.00 3.77
4533 7177 0.811616 GATGGTCGAGCAAAGCCGAT 60.812 55.000 22.64 2.39 34.90 4.18
4534 7178 1.447838 GATGGTCGAGCAAAGCCGA 60.448 57.895 22.64 0.00 0.00 5.54
4553 7197 1.653151 GACGAGGATTTGGGTAGCAC 58.347 55.000 0.00 0.00 0.00 4.40
4562 7206 2.249309 AGTGTAGGGGACGAGGATTT 57.751 50.000 0.00 0.00 0.00 2.17
4569 7213 0.739561 GAGCACTAGTGTAGGGGACG 59.260 60.000 23.44 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.