Multiple sequence alignment - TraesCS5B01G166900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G166900 chr5B 100.000 6084 0 0 1 6084 309009853 309003770 0.000000e+00 11236
1 TraesCS5B01G166900 chr5B 95.699 279 12 0 105 383 522895056 522895334 3.340000e-122 449
2 TraesCS5B01G166900 chr5A 94.276 3075 118 23 579 3617 362784738 362781686 0.000000e+00 4650
3 TraesCS5B01G166900 chr5A 97.197 1534 34 7 4053 5581 362780532 362779003 0.000000e+00 2586
4 TraesCS5B01G166900 chr5A 91.687 409 25 3 5647 6047 362778916 362778509 5.330000e-155 558
5 TraesCS5B01G166900 chr5A 94.981 259 12 1 3805 4062 362781260 362781002 7.340000e-109 405
6 TraesCS5B01G166900 chr5A 97.484 159 4 0 3613 3771 362781607 362781449 7.770000e-69 272
7 TraesCS5B01G166900 chr5D 96.989 1694 43 6 3805 5496 273524188 273522501 0.000000e+00 2839
8 TraesCS5B01G166900 chr5D 93.900 1869 76 16 431 2274 273528168 273526313 0.000000e+00 2785
9 TraesCS5B01G166900 chr5D 92.741 1047 50 6 2275 3306 273526075 273525040 0.000000e+00 1489
10 TraesCS5B01G166900 chr5D 93.527 448 19 4 5644 6084 273521948 273521504 0.000000e+00 658
11 TraesCS5B01G166900 chr5D 91.358 405 17 6 3370 3771 273525027 273524638 6.940000e-149 538
12 TraesCS5B01G166900 chr1B 95.699 279 12 0 105 383 517893007 517893285 3.340000e-122 449
13 TraesCS5B01G166900 chr1B 95.357 280 13 0 105 384 657322914 657323193 4.330000e-121 446
14 TraesCS5B01G166900 chr7B 94.425 287 16 0 103 389 59643949 59643663 5.600000e-120 442
15 TraesCS5B01G166900 chr7B 95.290 276 13 0 108 383 33031057 33031332 7.240000e-119 438
16 TraesCS5B01G166900 chr7B 94.681 282 11 2 107 387 5256850 5257128 9.370000e-118 435
17 TraesCS5B01G166900 chr3B 95.636 275 12 0 107 381 820327805 820327531 5.600000e-120 442
18 TraesCS5B01G166900 chr3B 94.718 284 14 1 102 384 72793564 72793281 2.010000e-119 440
19 TraesCS5B01G166900 chr4B 95.290 276 13 0 108 383 418491294 418491019 7.240000e-119 438


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G166900 chr5B 309003770 309009853 6083 True 11236.0 11236 100.000 1 6084 1 chr5B.!!$R1 6083
1 TraesCS5B01G166900 chr5A 362778509 362784738 6229 True 1694.2 4650 95.125 579 6047 5 chr5A.!!$R1 5468
2 TraesCS5B01G166900 chr5D 273521504 273528168 6664 True 1661.8 2839 93.703 431 6084 5 chr5D.!!$R1 5653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
402 403 0.035439 CACGGCAGGGAAGGTGTAAT 60.035 55.0 0.0 0.0 0.00 1.89 F
722 725 0.466555 CTCTACCCTCCTCACTCCCG 60.467 65.0 0.0 0.0 0.00 5.14 F
1674 1678 0.032540 CTGGCCGCAAAAAGCTTCTT 59.967 50.0 0.0 0.0 42.61 2.52 F
1800 1804 0.772124 TTTGCCCTGGAGGAGACCTT 60.772 55.0 0.0 0.0 38.24 3.50 F
3569 3852 0.251077 CAAGCTGTCCTTCTGCCCTT 60.251 55.0 0.0 0.0 41.02 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1407 1411 1.004595 CATCACTGACATCACTGCCG 58.995 55.000 0.0 0.00 0.00 5.69 R
2673 2936 1.423161 TGGACATGGATGTGTGGTCAA 59.577 47.619 0.0 0.00 41.95 3.18 R
2812 3075 0.246757 CGCGTCCAAAGAATCGTTCG 60.247 55.000 0.0 0.00 34.02 3.95 R
3673 4042 2.038837 GGGGAAAGGGAAACTCGCG 61.039 63.158 0.0 0.00 34.19 5.87 R
5503 6770 0.037975 GTTCCTTGCCTGGCACAATG 60.038 55.000 23.3 11.63 38.71 2.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.998099 TTCATTTTCATGCGACACCAA 57.002 38.095 0.00 0.00 0.00 3.67
21 22 3.998099 TCATTTTCATGCGACACCAAA 57.002 38.095 0.00 0.00 0.00 3.28
22 23 4.313277 TCATTTTCATGCGACACCAAAA 57.687 36.364 0.00 0.00 0.00 2.44
23 24 4.297510 TCATTTTCATGCGACACCAAAAG 58.702 39.130 0.00 0.00 0.00 2.27
24 25 2.132740 TTTCATGCGACACCAAAAGC 57.867 45.000 0.00 0.00 0.00 3.51
25 26 0.040514 TTCATGCGACACCAAAAGCG 60.041 50.000 0.00 0.00 0.00 4.68
26 27 1.442520 CATGCGACACCAAAAGCGG 60.443 57.895 0.00 0.00 0.00 5.52
27 28 3.267597 ATGCGACACCAAAAGCGGC 62.268 57.895 0.00 0.00 0.00 6.53
28 29 4.700365 GCGACACCAAAAGCGGCC 62.700 66.667 0.00 0.00 0.00 6.13
29 30 4.038080 CGACACCAAAAGCGGCCC 62.038 66.667 0.00 0.00 0.00 5.80
30 31 3.680786 GACACCAAAAGCGGCCCC 61.681 66.667 0.00 0.00 0.00 5.80
31 32 4.218686 ACACCAAAAGCGGCCCCT 62.219 61.111 0.00 0.00 0.00 4.79
32 33 3.683937 CACCAAAAGCGGCCCCTG 61.684 66.667 0.00 0.00 0.00 4.45
33 34 4.218686 ACCAAAAGCGGCCCCTGT 62.219 61.111 0.00 0.00 0.00 4.00
34 35 3.373565 CCAAAAGCGGCCCCTGTC 61.374 66.667 0.00 0.00 0.00 3.51
35 36 3.373565 CAAAAGCGGCCCCTGTCC 61.374 66.667 0.00 0.00 0.00 4.02
36 37 3.897122 AAAAGCGGCCCCTGTCCA 61.897 61.111 0.00 0.00 0.00 4.02
37 38 3.444818 AAAAGCGGCCCCTGTCCAA 62.445 57.895 0.00 0.00 0.00 3.53
38 39 4.660938 AAGCGGCCCCTGTCCAAC 62.661 66.667 0.00 0.00 0.00 3.77
42 43 3.897122 GGCCCCTGTCCAACCACA 61.897 66.667 0.00 0.00 0.00 4.17
43 44 2.282462 GCCCCTGTCCAACCACAG 60.282 66.667 0.00 0.00 43.13 3.66
57 58 1.418334 CCACAGGATGGTCCTCTAGG 58.582 60.000 0.00 0.00 45.66 3.02
58 59 1.343478 CCACAGGATGGTCCTCTAGGT 60.343 57.143 0.00 0.00 45.66 3.08
59 60 2.091278 CCACAGGATGGTCCTCTAGGTA 60.091 54.545 0.00 0.00 45.66 3.08
60 61 3.226777 CACAGGATGGTCCTCTAGGTAG 58.773 54.545 0.00 0.00 45.66 3.18
61 62 2.243810 CAGGATGGTCCTCTAGGTAGC 58.756 57.143 0.00 0.00 45.66 3.58
62 63 1.148236 AGGATGGTCCTCTAGGTAGCC 59.852 57.143 0.00 0.00 45.66 3.93
63 64 1.133136 GGATGGTCCTCTAGGTAGCCA 60.133 57.143 10.44 10.44 37.15 4.75
64 65 2.493687 GGATGGTCCTCTAGGTAGCCAT 60.494 54.545 16.48 16.48 41.72 4.40
65 66 3.245658 GGATGGTCCTCTAGGTAGCCATA 60.246 52.174 16.49 0.00 40.40 2.74
66 67 3.985553 TGGTCCTCTAGGTAGCCATAA 57.014 47.619 0.00 0.00 36.34 1.90
67 68 4.274794 TGGTCCTCTAGGTAGCCATAAA 57.725 45.455 0.00 0.00 36.34 1.40
68 69 4.827789 TGGTCCTCTAGGTAGCCATAAAT 58.172 43.478 0.00 0.00 36.34 1.40
69 70 5.224441 TGGTCCTCTAGGTAGCCATAAATT 58.776 41.667 0.00 0.00 36.34 1.82
70 71 6.387127 TGGTCCTCTAGGTAGCCATAAATTA 58.613 40.000 0.00 0.00 36.34 1.40
71 72 6.497259 TGGTCCTCTAGGTAGCCATAAATTAG 59.503 42.308 0.00 0.00 36.34 1.73
72 73 6.070710 GGTCCTCTAGGTAGCCATAAATTAGG 60.071 46.154 0.00 0.00 36.34 2.69
73 74 6.497606 GTCCTCTAGGTAGCCATAAATTAGGT 59.502 42.308 0.00 0.00 36.34 3.08
74 75 6.497259 TCCTCTAGGTAGCCATAAATTAGGTG 59.503 42.308 0.00 0.00 36.34 4.00
75 76 6.110411 TCTAGGTAGCCATAAATTAGGTGC 57.890 41.667 0.00 0.00 0.00 5.01
76 77 5.844516 TCTAGGTAGCCATAAATTAGGTGCT 59.155 40.000 6.08 6.08 0.00 4.40
77 78 4.974399 AGGTAGCCATAAATTAGGTGCTC 58.026 43.478 4.46 0.00 0.00 4.26
78 79 4.072839 GGTAGCCATAAATTAGGTGCTCC 58.927 47.826 0.00 0.00 0.00 4.70
79 80 3.951563 AGCCATAAATTAGGTGCTCCA 57.048 42.857 7.70 0.00 35.89 3.86
80 81 3.825328 AGCCATAAATTAGGTGCTCCAG 58.175 45.455 7.70 0.00 35.89 3.86
81 82 3.203040 AGCCATAAATTAGGTGCTCCAGT 59.797 43.478 7.70 0.00 35.89 4.00
82 83 4.412199 AGCCATAAATTAGGTGCTCCAGTA 59.588 41.667 7.70 0.00 35.89 2.74
83 84 5.104109 AGCCATAAATTAGGTGCTCCAGTAA 60.104 40.000 7.70 0.00 35.89 2.24
84 85 5.592688 GCCATAAATTAGGTGCTCCAGTAAA 59.407 40.000 7.70 0.00 35.89 2.01
85 86 6.459710 GCCATAAATTAGGTGCTCCAGTAAAC 60.460 42.308 7.70 0.00 35.89 2.01
86 87 6.238374 CCATAAATTAGGTGCTCCAGTAAACG 60.238 42.308 7.70 0.00 35.89 3.60
87 88 2.754946 TTAGGTGCTCCAGTAAACGG 57.245 50.000 7.70 0.00 35.89 4.44
88 89 1.927487 TAGGTGCTCCAGTAAACGGA 58.073 50.000 7.70 0.00 35.89 4.69
89 90 1.053424 AGGTGCTCCAGTAAACGGAA 58.947 50.000 7.70 0.00 35.89 4.30
90 91 1.002087 AGGTGCTCCAGTAAACGGAAG 59.998 52.381 7.70 0.00 35.89 3.46
91 92 1.001633 GGTGCTCCAGTAAACGGAAGA 59.998 52.381 0.00 0.00 30.33 2.87
92 93 2.338500 GTGCTCCAGTAAACGGAAGAG 58.662 52.381 0.00 0.00 30.33 2.85
93 94 1.968493 TGCTCCAGTAAACGGAAGAGT 59.032 47.619 0.00 0.00 30.33 3.24
94 95 2.288825 TGCTCCAGTAAACGGAAGAGTG 60.289 50.000 0.00 0.00 30.33 3.51
95 96 2.931320 GCTCCAGTAAACGGAAGAGTGG 60.931 54.545 0.00 0.00 30.33 4.00
96 97 2.561419 CTCCAGTAAACGGAAGAGTGGA 59.439 50.000 5.62 5.62 30.33 4.02
97 98 2.967201 TCCAGTAAACGGAAGAGTGGAA 59.033 45.455 3.71 0.00 29.63 3.53
98 99 3.388676 TCCAGTAAACGGAAGAGTGGAAA 59.611 43.478 3.71 0.00 29.63 3.13
99 100 4.131596 CCAGTAAACGGAAGAGTGGAAAA 58.868 43.478 0.00 0.00 0.00 2.29
100 101 4.577283 CCAGTAAACGGAAGAGTGGAAAAA 59.423 41.667 0.00 0.00 0.00 1.94
101 102 5.240844 CCAGTAAACGGAAGAGTGGAAAAAT 59.759 40.000 0.00 0.00 0.00 1.82
102 103 6.428771 CCAGTAAACGGAAGAGTGGAAAAATA 59.571 38.462 0.00 0.00 0.00 1.40
103 104 7.120726 CCAGTAAACGGAAGAGTGGAAAAATAT 59.879 37.037 0.00 0.00 0.00 1.28
104 105 8.512138 CAGTAAACGGAAGAGTGGAAAAATATT 58.488 33.333 0.00 0.00 0.00 1.28
105 106 9.074576 AGTAAACGGAAGAGTGGAAAAATATTT 57.925 29.630 0.00 0.00 0.00 1.40
108 109 8.857694 AACGGAAGAGTGGAAAAATATTTAGA 57.142 30.769 0.01 0.00 0.00 2.10
109 110 8.265165 ACGGAAGAGTGGAAAAATATTTAGAC 57.735 34.615 0.01 0.00 0.00 2.59
110 111 8.101419 ACGGAAGAGTGGAAAAATATTTAGACT 58.899 33.333 0.01 1.62 0.00 3.24
111 112 9.595823 CGGAAGAGTGGAAAAATATTTAGACTA 57.404 33.333 0.01 0.00 0.00 2.59
122 123 9.449719 AAAAATATTTAGACTAGTCACAGTGGG 57.550 33.333 24.44 0.00 0.00 4.61
123 124 7.973048 AATATTTAGACTAGTCACAGTGGGA 57.027 36.000 24.44 0.00 0.00 4.37
124 125 5.923733 ATTTAGACTAGTCACAGTGGGAG 57.076 43.478 24.44 0.00 0.00 4.30
125 126 2.982339 AGACTAGTCACAGTGGGAGT 57.018 50.000 24.44 8.06 0.00 3.85
126 127 5.509832 TTAGACTAGTCACAGTGGGAGTA 57.490 43.478 24.44 9.60 0.00 2.59
127 128 4.383931 AGACTAGTCACAGTGGGAGTAA 57.616 45.455 24.44 0.00 0.00 2.24
128 129 4.080687 AGACTAGTCACAGTGGGAGTAAC 58.919 47.826 24.44 8.29 0.00 2.50
129 130 4.080687 GACTAGTCACAGTGGGAGTAACT 58.919 47.826 18.20 0.68 0.00 2.24
130 131 4.481072 ACTAGTCACAGTGGGAGTAACTT 58.519 43.478 11.10 0.00 0.00 2.66
131 132 4.523558 ACTAGTCACAGTGGGAGTAACTTC 59.476 45.833 11.10 0.00 0.00 3.01
132 133 3.305720 AGTCACAGTGGGAGTAACTTCA 58.694 45.455 0.00 0.00 0.00 3.02
133 134 3.322254 AGTCACAGTGGGAGTAACTTCAG 59.678 47.826 0.00 0.00 0.00 3.02
134 135 3.069729 GTCACAGTGGGAGTAACTTCAGT 59.930 47.826 0.00 0.00 0.00 3.41
135 136 4.280174 GTCACAGTGGGAGTAACTTCAGTA 59.720 45.833 0.00 0.00 0.00 2.74
136 137 4.523173 TCACAGTGGGAGTAACTTCAGTAG 59.477 45.833 0.00 0.00 0.00 2.57
137 138 4.281182 CACAGTGGGAGTAACTTCAGTAGT 59.719 45.833 0.00 0.00 39.32 2.73
138 139 5.475909 CACAGTGGGAGTAACTTCAGTAGTA 59.524 44.000 0.00 0.00 35.54 1.82
139 140 6.015688 CACAGTGGGAGTAACTTCAGTAGTAA 60.016 42.308 0.00 0.00 35.54 2.24
140 141 6.015603 ACAGTGGGAGTAACTTCAGTAGTAAC 60.016 42.308 0.00 0.00 35.54 2.50
141 142 6.015688 CAGTGGGAGTAACTTCAGTAGTAACA 60.016 42.308 0.00 0.00 35.54 2.41
142 143 6.724905 AGTGGGAGTAACTTCAGTAGTAACAT 59.275 38.462 0.00 0.00 35.54 2.71
143 144 7.034397 GTGGGAGTAACTTCAGTAGTAACATC 58.966 42.308 0.00 0.00 35.54 3.06
144 145 6.127814 TGGGAGTAACTTCAGTAGTAACATCG 60.128 42.308 0.00 0.00 35.54 3.84
145 146 6.094603 GGGAGTAACTTCAGTAGTAACATCGA 59.905 42.308 0.00 0.00 35.54 3.59
146 147 7.188157 GGAGTAACTTCAGTAGTAACATCGAG 58.812 42.308 0.00 0.00 35.54 4.04
147 148 7.148272 GGAGTAACTTCAGTAGTAACATCGAGT 60.148 40.741 0.00 0.00 35.54 4.18
148 149 7.750769 AGTAACTTCAGTAGTAACATCGAGTC 58.249 38.462 0.00 0.00 35.54 3.36
149 150 5.564048 ACTTCAGTAGTAACATCGAGTCC 57.436 43.478 0.00 0.00 34.56 3.85
150 151 5.008331 ACTTCAGTAGTAACATCGAGTCCA 58.992 41.667 0.00 0.00 34.56 4.02
151 152 5.475909 ACTTCAGTAGTAACATCGAGTCCAA 59.524 40.000 0.00 0.00 34.56 3.53
152 153 5.306532 TCAGTAGTAACATCGAGTCCAAC 57.693 43.478 0.00 0.00 0.00 3.77
153 154 5.008331 TCAGTAGTAACATCGAGTCCAACT 58.992 41.667 0.00 0.00 0.00 3.16
154 155 5.123502 TCAGTAGTAACATCGAGTCCAACTC 59.876 44.000 0.00 0.00 41.71 3.01
155 156 5.008331 AGTAGTAACATCGAGTCCAACTCA 58.992 41.667 7.78 0.00 45.30 3.41
156 157 4.442375 AGTAACATCGAGTCCAACTCAG 57.558 45.455 7.78 1.37 45.30 3.35
157 158 2.086054 AACATCGAGTCCAACTCAGC 57.914 50.000 7.78 0.00 45.30 4.26
158 159 0.969149 ACATCGAGTCCAACTCAGCA 59.031 50.000 7.78 0.00 45.30 4.41
159 160 1.344438 ACATCGAGTCCAACTCAGCAA 59.656 47.619 7.78 0.00 45.30 3.91
160 161 1.728971 CATCGAGTCCAACTCAGCAAC 59.271 52.381 7.78 0.00 45.30 4.17
161 162 1.040646 TCGAGTCCAACTCAGCAACT 58.959 50.000 7.78 0.00 45.30 3.16
162 163 1.412710 TCGAGTCCAACTCAGCAACTT 59.587 47.619 7.78 0.00 45.30 2.66
163 164 2.158957 TCGAGTCCAACTCAGCAACTTT 60.159 45.455 7.78 0.00 45.30 2.66
164 165 2.032549 CGAGTCCAACTCAGCAACTTTG 60.033 50.000 7.78 0.00 45.30 2.77
165 166 2.287248 GAGTCCAACTCAGCAACTTTGC 60.287 50.000 5.79 5.79 44.45 3.68
178 179 4.914312 CAACTTTGCTTATGTGGCAATG 57.086 40.909 11.03 11.03 46.81 2.82
179 180 4.558178 CAACTTTGCTTATGTGGCAATGA 58.442 39.130 16.93 0.00 46.81 2.57
180 181 4.445452 ACTTTGCTTATGTGGCAATGAG 57.555 40.909 16.93 9.05 46.81 2.90
181 182 3.828451 ACTTTGCTTATGTGGCAATGAGT 59.172 39.130 16.93 9.55 46.81 3.41
182 183 4.281688 ACTTTGCTTATGTGGCAATGAGTT 59.718 37.500 16.93 0.00 46.81 3.01
183 184 5.476599 ACTTTGCTTATGTGGCAATGAGTTA 59.523 36.000 16.93 0.00 46.81 2.24
184 185 5.973899 TTGCTTATGTGGCAATGAGTTAA 57.026 34.783 0.00 0.00 43.50 2.01
185 186 6.528537 TTGCTTATGTGGCAATGAGTTAAT 57.471 33.333 0.00 0.00 43.50 1.40
186 187 5.893687 TGCTTATGTGGCAATGAGTTAATG 58.106 37.500 0.00 0.00 36.71 1.90
187 188 5.651576 TGCTTATGTGGCAATGAGTTAATGA 59.348 36.000 0.00 0.00 36.71 2.57
188 189 6.152492 TGCTTATGTGGCAATGAGTTAATGAA 59.848 34.615 0.00 0.00 36.71 2.57
189 190 6.694411 GCTTATGTGGCAATGAGTTAATGAAG 59.306 38.462 0.00 0.00 0.00 3.02
190 191 7.415541 GCTTATGTGGCAATGAGTTAATGAAGA 60.416 37.037 0.00 0.00 0.00 2.87
191 192 5.885230 TGTGGCAATGAGTTAATGAAGAG 57.115 39.130 0.00 0.00 0.00 2.85
192 193 5.559770 TGTGGCAATGAGTTAATGAAGAGA 58.440 37.500 0.00 0.00 0.00 3.10
193 194 5.645067 TGTGGCAATGAGTTAATGAAGAGAG 59.355 40.000 0.00 0.00 0.00 3.20
194 195 5.877012 GTGGCAATGAGTTAATGAAGAGAGA 59.123 40.000 0.00 0.00 0.00 3.10
195 196 6.036953 GTGGCAATGAGTTAATGAAGAGAGAG 59.963 42.308 0.00 0.00 0.00 3.20
196 197 5.526846 GGCAATGAGTTAATGAAGAGAGAGG 59.473 44.000 0.00 0.00 0.00 3.69
197 198 6.112058 GCAATGAGTTAATGAAGAGAGAGGT 58.888 40.000 0.00 0.00 0.00 3.85
198 199 7.268586 GCAATGAGTTAATGAAGAGAGAGGTA 58.731 38.462 0.00 0.00 0.00 3.08
199 200 7.437862 GCAATGAGTTAATGAAGAGAGAGGTAG 59.562 40.741 0.00 0.00 0.00 3.18
200 201 8.474025 CAATGAGTTAATGAAGAGAGAGGTAGT 58.526 37.037 0.00 0.00 0.00 2.73
201 202 8.602472 ATGAGTTAATGAAGAGAGAGGTAGTT 57.398 34.615 0.00 0.00 0.00 2.24
202 203 9.702253 ATGAGTTAATGAAGAGAGAGGTAGTTA 57.298 33.333 0.00 0.00 0.00 2.24
203 204 8.958506 TGAGTTAATGAAGAGAGAGGTAGTTAC 58.041 37.037 0.00 0.00 0.00 2.50
204 205 8.880991 AGTTAATGAAGAGAGAGGTAGTTACA 57.119 34.615 0.00 0.00 0.00 2.41
205 206 8.962679 AGTTAATGAAGAGAGAGGTAGTTACAG 58.037 37.037 0.00 0.00 0.00 2.74
206 207 8.741841 GTTAATGAAGAGAGAGGTAGTTACAGT 58.258 37.037 0.00 0.00 0.00 3.55
207 208 9.970553 TTAATGAAGAGAGAGGTAGTTACAGTA 57.029 33.333 0.00 0.00 0.00 2.74
208 209 8.880991 AATGAAGAGAGAGGTAGTTACAGTAA 57.119 34.615 0.00 0.00 0.00 2.24
209 210 7.684937 TGAAGAGAGAGGTAGTTACAGTAAC 57.315 40.000 14.76 14.76 38.94 2.50
211 212 7.943447 TGAAGAGAGAGGTAGTTACAGTAACTT 59.057 37.037 27.29 12.68 46.27 2.66
212 213 9.447157 GAAGAGAGAGGTAGTTACAGTAACTTA 57.553 37.037 27.29 12.99 46.27 2.24
213 214 9.804977 AAGAGAGAGGTAGTTACAGTAACTTAA 57.195 33.333 27.29 10.97 46.27 1.85
214 215 9.230122 AGAGAGAGGTAGTTACAGTAACTTAAC 57.770 37.037 27.29 20.32 46.27 2.01
215 216 9.230122 GAGAGAGGTAGTTACAGTAACTTAACT 57.770 37.037 27.29 21.63 46.27 2.24
237 238 8.758633 AACTAGTTACTGTAACATCACATGTC 57.241 34.615 27.12 2.19 44.07 3.06
238 239 7.321153 ACTAGTTACTGTAACATCACATGTCC 58.679 38.462 27.12 1.73 44.07 4.02
239 240 5.488341 AGTTACTGTAACATCACATGTCCC 58.512 41.667 27.12 1.55 44.07 4.46
240 241 5.012664 AGTTACTGTAACATCACATGTCCCA 59.987 40.000 27.12 0.00 44.07 4.37
241 242 4.365514 ACTGTAACATCACATGTCCCAA 57.634 40.909 0.00 0.00 44.07 4.12
242 243 4.922206 ACTGTAACATCACATGTCCCAAT 58.078 39.130 0.00 0.00 44.07 3.16
243 244 4.701651 ACTGTAACATCACATGTCCCAATG 59.298 41.667 0.00 0.45 44.07 2.82
244 245 3.443329 TGTAACATCACATGTCCCAATGC 59.557 43.478 0.00 0.00 44.07 3.56
245 246 2.219080 ACATCACATGTCCCAATGCA 57.781 45.000 0.00 0.00 39.92 3.96
246 247 2.527497 ACATCACATGTCCCAATGCAA 58.473 42.857 0.00 0.00 39.92 4.08
247 248 3.101437 ACATCACATGTCCCAATGCAAT 58.899 40.909 0.00 0.00 39.92 3.56
248 249 4.279982 ACATCACATGTCCCAATGCAATA 58.720 39.130 0.00 0.00 39.92 1.90
249 250 4.897076 ACATCACATGTCCCAATGCAATAT 59.103 37.500 0.00 0.00 39.92 1.28
250 251 4.922471 TCACATGTCCCAATGCAATATG 57.078 40.909 0.00 0.00 0.00 1.78
251 252 4.534797 TCACATGTCCCAATGCAATATGA 58.465 39.130 0.00 0.00 0.00 2.15
252 253 4.581409 TCACATGTCCCAATGCAATATGAG 59.419 41.667 0.00 0.00 0.00 2.90
253 254 4.340097 CACATGTCCCAATGCAATATGAGT 59.660 41.667 0.00 0.00 0.00 3.41
254 255 4.581824 ACATGTCCCAATGCAATATGAGTC 59.418 41.667 0.00 0.00 0.00 3.36
255 256 4.508551 TGTCCCAATGCAATATGAGTCT 57.491 40.909 0.00 0.00 0.00 3.24
256 257 5.628797 TGTCCCAATGCAATATGAGTCTA 57.371 39.130 0.00 0.00 0.00 2.59
257 258 6.191657 TGTCCCAATGCAATATGAGTCTAT 57.808 37.500 0.00 0.00 0.00 1.98
258 259 7.315066 TGTCCCAATGCAATATGAGTCTATA 57.685 36.000 0.00 0.00 0.00 1.31
259 260 7.744733 TGTCCCAATGCAATATGAGTCTATAA 58.255 34.615 0.00 0.00 0.00 0.98
260 261 7.661437 TGTCCCAATGCAATATGAGTCTATAAC 59.339 37.037 0.00 0.00 0.00 1.89
261 262 7.119846 GTCCCAATGCAATATGAGTCTATAACC 59.880 40.741 0.00 0.00 0.00 2.85
262 263 7.017551 TCCCAATGCAATATGAGTCTATAACCT 59.982 37.037 0.00 0.00 0.00 3.50
263 264 8.321353 CCCAATGCAATATGAGTCTATAACCTA 58.679 37.037 0.00 0.00 0.00 3.08
264 265 9.725019 CCAATGCAATATGAGTCTATAACCTAA 57.275 33.333 0.00 0.00 0.00 2.69
282 283 9.754382 ATAACCTAATAAATGAAGCTTTGCATG 57.246 29.630 0.00 0.00 0.00 4.06
283 284 7.174107 ACCTAATAAATGAAGCTTTGCATGT 57.826 32.000 0.00 0.00 0.00 3.21
284 285 7.614494 ACCTAATAAATGAAGCTTTGCATGTT 58.386 30.769 0.00 1.51 0.00 2.71
285 286 8.748412 ACCTAATAAATGAAGCTTTGCATGTTA 58.252 29.630 0.00 3.50 0.00 2.41
286 287 9.023967 CCTAATAAATGAAGCTTTGCATGTTAC 57.976 33.333 0.00 0.00 0.00 2.50
287 288 7.832503 AATAAATGAAGCTTTGCATGTTACC 57.167 32.000 0.00 0.00 0.00 2.85
288 289 4.870123 AATGAAGCTTTGCATGTTACCA 57.130 36.364 0.00 0.00 0.00 3.25
289 290 3.641437 TGAAGCTTTGCATGTTACCAC 57.359 42.857 0.00 0.00 0.00 4.16
290 291 2.954989 TGAAGCTTTGCATGTTACCACA 59.045 40.909 0.00 0.00 37.31 4.17
291 292 3.243367 TGAAGCTTTGCATGTTACCACAC 60.243 43.478 0.00 0.00 35.03 3.82
292 293 2.586425 AGCTTTGCATGTTACCACACT 58.414 42.857 0.00 0.00 35.03 3.55
293 294 2.958355 AGCTTTGCATGTTACCACACTT 59.042 40.909 0.00 0.00 35.03 3.16
294 295 4.141287 AGCTTTGCATGTTACCACACTTA 58.859 39.130 0.00 0.00 35.03 2.24
295 296 4.766891 AGCTTTGCATGTTACCACACTTAT 59.233 37.500 0.00 0.00 35.03 1.73
296 297 5.943416 AGCTTTGCATGTTACCACACTTATA 59.057 36.000 0.00 0.00 35.03 0.98
297 298 6.603201 AGCTTTGCATGTTACCACACTTATAT 59.397 34.615 0.00 0.00 35.03 0.86
298 299 7.122650 AGCTTTGCATGTTACCACACTTATATT 59.877 33.333 0.00 0.00 35.03 1.28
299 300 8.402472 GCTTTGCATGTTACCACACTTATATTA 58.598 33.333 0.00 0.00 35.03 0.98
300 301 9.716507 CTTTGCATGTTACCACACTTATATTAC 57.283 33.333 0.00 0.00 35.03 1.89
301 302 9.456147 TTTGCATGTTACCACACTTATATTACT 57.544 29.630 0.00 0.00 35.03 2.24
303 304 9.537192 TGCATGTTACCACACTTATATTACTAC 57.463 33.333 0.00 0.00 35.03 2.73
304 305 8.985805 GCATGTTACCACACTTATATTACTACC 58.014 37.037 0.00 0.00 35.03 3.18
305 306 9.485206 CATGTTACCACACTTATATTACTACCC 57.515 37.037 0.00 0.00 35.03 3.69
306 307 8.606754 TGTTACCACACTTATATTACTACCCA 57.393 34.615 0.00 0.00 0.00 4.51
307 308 8.477256 TGTTACCACACTTATATTACTACCCAC 58.523 37.037 0.00 0.00 0.00 4.61
308 309 8.699130 GTTACCACACTTATATTACTACCCACT 58.301 37.037 0.00 0.00 0.00 4.00
309 310 9.934784 TTACCACACTTATATTACTACCCACTA 57.065 33.333 0.00 0.00 0.00 2.74
311 312 8.867097 ACCACACTTATATTACTACCCACTATG 58.133 37.037 0.00 0.00 0.00 2.23
312 313 9.085645 CCACACTTATATTACTACCCACTATGA 57.914 37.037 0.00 0.00 0.00 2.15
373 374 9.056005 ACTAGTGTATGTTATTATGCATTGTGG 57.944 33.333 3.54 0.00 0.00 4.17
374 375 6.738114 AGTGTATGTTATTATGCATTGTGGC 58.262 36.000 3.54 0.00 0.00 5.01
375 376 6.547141 AGTGTATGTTATTATGCATTGTGGCT 59.453 34.615 3.54 0.00 34.04 4.75
376 377 7.719193 AGTGTATGTTATTATGCATTGTGGCTA 59.281 33.333 3.54 0.00 34.04 3.93
377 378 8.017373 GTGTATGTTATTATGCATTGTGGCTAG 58.983 37.037 3.54 0.00 34.04 3.42
378 379 7.719193 TGTATGTTATTATGCATTGTGGCTAGT 59.281 33.333 3.54 0.00 34.04 2.57
379 380 6.618287 TGTTATTATGCATTGTGGCTAGTC 57.382 37.500 3.54 0.00 34.04 2.59
380 381 6.356556 TGTTATTATGCATTGTGGCTAGTCT 58.643 36.000 3.54 0.00 34.04 3.24
381 382 6.828273 TGTTATTATGCATTGTGGCTAGTCTT 59.172 34.615 3.54 0.00 34.04 3.01
382 383 7.990314 TGTTATTATGCATTGTGGCTAGTCTTA 59.010 33.333 3.54 0.00 34.04 2.10
383 384 6.867662 ATTATGCATTGTGGCTAGTCTTAC 57.132 37.500 3.54 0.00 34.04 2.34
384 385 3.694043 TGCATTGTGGCTAGTCTTACA 57.306 42.857 0.00 0.00 34.04 2.41
385 386 3.334691 TGCATTGTGGCTAGTCTTACAC 58.665 45.455 0.00 0.00 34.04 2.90
386 387 2.348666 GCATTGTGGCTAGTCTTACACG 59.651 50.000 0.00 0.00 36.67 4.49
387 388 2.736144 TTGTGGCTAGTCTTACACGG 57.264 50.000 0.00 0.00 36.67 4.94
388 389 0.245539 TGTGGCTAGTCTTACACGGC 59.754 55.000 0.00 0.00 36.67 5.68
389 390 0.245539 GTGGCTAGTCTTACACGGCA 59.754 55.000 0.00 0.00 32.51 5.69
390 391 0.530744 TGGCTAGTCTTACACGGCAG 59.469 55.000 0.00 0.00 32.51 4.85
391 392 0.179108 GGCTAGTCTTACACGGCAGG 60.179 60.000 0.00 0.00 32.51 4.85
392 393 0.179108 GCTAGTCTTACACGGCAGGG 60.179 60.000 0.00 0.00 0.00 4.45
393 394 1.471119 CTAGTCTTACACGGCAGGGA 58.529 55.000 0.00 0.00 0.00 4.20
394 395 1.822990 CTAGTCTTACACGGCAGGGAA 59.177 52.381 0.00 0.00 0.00 3.97
395 396 0.608640 AGTCTTACACGGCAGGGAAG 59.391 55.000 0.00 0.00 0.00 3.46
396 397 0.391263 GTCTTACACGGCAGGGAAGG 60.391 60.000 0.00 0.00 0.00 3.46
397 398 0.834687 TCTTACACGGCAGGGAAGGT 60.835 55.000 0.00 0.00 0.00 3.50
398 399 0.673644 CTTACACGGCAGGGAAGGTG 60.674 60.000 0.00 0.00 36.50 4.00
399 400 1.412453 TTACACGGCAGGGAAGGTGT 61.412 55.000 0.00 1.12 44.93 4.16
400 401 0.542467 TACACGGCAGGGAAGGTGTA 60.542 55.000 0.00 0.00 42.95 2.90
401 402 1.373435 CACGGCAGGGAAGGTGTAA 59.627 57.895 0.00 0.00 0.00 2.41
402 403 0.035439 CACGGCAGGGAAGGTGTAAT 60.035 55.000 0.00 0.00 0.00 1.89
403 404 1.208535 CACGGCAGGGAAGGTGTAATA 59.791 52.381 0.00 0.00 0.00 0.98
404 405 2.124411 ACGGCAGGGAAGGTGTAATAT 58.876 47.619 0.00 0.00 0.00 1.28
405 406 2.508300 ACGGCAGGGAAGGTGTAATATT 59.492 45.455 0.00 0.00 0.00 1.28
406 407 3.053917 ACGGCAGGGAAGGTGTAATATTT 60.054 43.478 0.00 0.00 0.00 1.40
407 408 3.951680 CGGCAGGGAAGGTGTAATATTTT 59.048 43.478 0.00 0.00 0.00 1.82
408 409 5.127491 CGGCAGGGAAGGTGTAATATTTTA 58.873 41.667 0.00 0.00 0.00 1.52
409 410 5.768164 CGGCAGGGAAGGTGTAATATTTTAT 59.232 40.000 0.00 0.00 0.00 1.40
410 411 6.938030 CGGCAGGGAAGGTGTAATATTTTATA 59.062 38.462 0.00 0.00 0.00 0.98
411 412 7.094933 CGGCAGGGAAGGTGTAATATTTTATAC 60.095 40.741 0.00 0.00 0.00 1.47
412 413 7.094933 GGCAGGGAAGGTGTAATATTTTATACG 60.095 40.741 0.00 0.00 32.02 3.06
413 414 7.658575 GCAGGGAAGGTGTAATATTTTATACGA 59.341 37.037 0.00 0.00 32.02 3.43
414 415 9.720769 CAGGGAAGGTGTAATATTTTATACGAT 57.279 33.333 0.00 0.00 32.02 3.73
415 416 9.720769 AGGGAAGGTGTAATATTTTATACGATG 57.279 33.333 0.00 0.00 32.02 3.84
416 417 9.715121 GGGAAGGTGTAATATTTTATACGATGA 57.285 33.333 0.00 0.00 32.02 2.92
428 429 8.786826 ATTTTATACGATGAAAAGTGTGGAGA 57.213 30.769 0.00 0.00 0.00 3.71
429 430 8.786826 TTTTATACGATGAAAAGTGTGGAGAT 57.213 30.769 0.00 0.00 0.00 2.75
430 431 8.420374 TTTATACGATGAAAAGTGTGGAGATC 57.580 34.615 0.00 0.00 0.00 2.75
431 432 3.254060 ACGATGAAAAGTGTGGAGATCG 58.746 45.455 0.00 0.00 37.75 3.69
432 433 2.604914 CGATGAAAAGTGTGGAGATCGG 59.395 50.000 0.00 0.00 0.00 4.18
433 434 3.676049 CGATGAAAAGTGTGGAGATCGGA 60.676 47.826 0.00 0.00 0.00 4.55
434 435 3.762407 TGAAAAGTGTGGAGATCGGAA 57.238 42.857 0.00 0.00 0.00 4.30
435 436 3.664107 TGAAAAGTGTGGAGATCGGAAG 58.336 45.455 0.00 0.00 0.00 3.46
457 458 2.708325 AGGAGGCTCTTCACTTTCACTT 59.292 45.455 15.23 0.00 0.00 3.16
515 516 5.279456 CCGTTCCCTCATTCCATTTTCTTTT 60.279 40.000 0.00 0.00 0.00 2.27
516 517 5.634859 CGTTCCCTCATTCCATTTTCTTTTG 59.365 40.000 0.00 0.00 0.00 2.44
530 531 7.540055 CCATTTTCTTTTGGATTCTCTTCTTCG 59.460 37.037 0.00 0.00 34.81 3.79
536 537 4.252971 TGGATTCTCTTCTTCGTTTCGT 57.747 40.909 0.00 0.00 0.00 3.85
714 717 2.583566 AGTAAGCAGACTCTACCCTCCT 59.416 50.000 0.00 0.00 0.00 3.69
722 725 0.466555 CTCTACCCTCCTCACTCCCG 60.467 65.000 0.00 0.00 0.00 5.14
723 726 1.212934 TCTACCCTCCTCACTCCCGT 61.213 60.000 0.00 0.00 0.00 5.28
905 909 5.360999 TGTGATGATAGGTCTCGATTTCACT 59.639 40.000 0.00 0.00 33.79 3.41
908 912 2.961526 TAGGTCTCGATTTCACTGCC 57.038 50.000 0.00 0.00 0.00 4.85
1197 1201 6.148480 CCAGTGGAGTGAAAGAACAAGATAAG 59.852 42.308 1.68 0.00 0.00 1.73
1396 1400 0.669318 CGGGAAGAGCAGCGTTTACA 60.669 55.000 0.00 0.00 0.00 2.41
1401 1405 1.376037 GAGCAGCGTTTACAGGGCT 60.376 57.895 0.00 0.00 37.55 5.19
1674 1678 0.032540 CTGGCCGCAAAAAGCTTCTT 59.967 50.000 0.00 0.00 42.61 2.52
1680 1684 2.226437 CCGCAAAAAGCTTCTTAGAGCA 59.774 45.455 0.00 0.00 45.12 4.26
1800 1804 0.772124 TTTGCCCTGGAGGAGACCTT 60.772 55.000 0.00 0.00 38.24 3.50
1862 1866 3.214696 ACAAGCTGCCAAGTAAGAGTT 57.785 42.857 0.00 0.00 0.00 3.01
1874 1878 7.012421 TGCCAAGTAAGAGTTTTCTTTCTCTTC 59.988 37.037 10.09 4.34 44.47 2.87
2074 2098 8.961294 ATTGTTGATTTCAATTTCTTGGAACA 57.039 26.923 0.00 0.00 38.24 3.18
2236 2262 4.312443 CTGCTGTTGCTGGATTCATTTTT 58.688 39.130 0.00 0.00 40.48 1.94
2302 2565 4.227864 AGTCTCAGGGATCACAAAATCC 57.772 45.455 0.00 0.00 43.90 3.01
2466 2729 7.608761 TGGGATCTTACCTGTTAAATACAACAC 59.391 37.037 0.00 0.00 36.02 3.32
2530 2793 3.873361 TGTGCTTGCATTATCTGAGTAGC 59.127 43.478 0.00 0.00 0.00 3.58
2595 2858 4.081365 TGGGTATATTTGCTCTCGAACACA 60.081 41.667 0.00 0.00 0.00 3.72
2694 2957 1.634973 TGACCACACATCCATGTCCAT 59.365 47.619 0.00 0.00 39.39 3.41
2713 2976 5.303845 GTCCATTACTCCCTACGTTCCTATT 59.696 44.000 0.00 0.00 0.00 1.73
2719 2982 9.819754 ATTACTCCCTACGTTCCTATTAGTTAT 57.180 33.333 0.00 0.00 0.00 1.89
2736 2999 7.603963 TTAGTTATGCGTAAATTTCTCAGCA 57.396 32.000 3.68 10.65 39.02 4.41
2752 3015 2.840753 GCACCCACCCCAAGGAGAA 61.841 63.158 0.00 0.00 36.73 2.87
2770 3033 5.070685 GGAGAACCCACAGTCAAAATTAGT 58.929 41.667 0.00 0.00 34.14 2.24
2781 3044 7.222611 CACAGTCAAAATTAGTTTCCCAACTTG 59.777 37.037 0.00 0.00 40.66 3.16
2812 3075 2.450609 TTACTCTCTTGTGGGTTCGC 57.549 50.000 0.00 0.00 0.00 4.70
2836 3099 1.722011 GATTCTTTGGACGCGAGGAA 58.278 50.000 15.93 2.19 0.00 3.36
2837 3100 2.280628 GATTCTTTGGACGCGAGGAAT 58.719 47.619 15.93 7.96 0.00 3.01
2869 3132 2.291153 TGGAGCCAATCTTGAAAGGAGG 60.291 50.000 0.00 0.00 0.00 4.30
2921 3184 2.093658 TCTAAGGGATCCGTTCAGCAAC 60.094 50.000 22.50 0.00 0.00 4.17
2947 3210 9.193133 CAGTAGTGATTAAACGAGGGTATTATG 57.807 37.037 0.00 0.00 0.00 1.90
2956 3219 3.246021 ACGAGGGTATTATGGGCTAGGAT 60.246 47.826 0.00 0.00 0.00 3.24
3033 3296 6.183361 TGGTAACATAGGCCTTAAGGTACATC 60.183 42.308 22.55 5.49 46.17 3.06
3144 3420 6.321690 AGAGACTAGTGTTTTCTGTACTGTGT 59.678 38.462 0.00 0.00 0.00 3.72
3152 3428 9.649167 AGTGTTTTCTGTACTGTGTAATATACC 57.351 33.333 0.00 0.00 0.00 2.73
3212 3489 3.266510 TGGAGTGGACATAACTGCATC 57.733 47.619 0.00 0.00 40.55 3.91
3271 3550 9.193806 ACTGTCTGAATAAAGGCATATGAAAAT 57.806 29.630 6.97 0.00 29.80 1.82
3458 3737 6.539826 TGTGTATCTGATGCCTAATTCAGTTG 59.460 38.462 0.00 0.00 40.22 3.16
3464 3743 4.635765 TGATGCCTAATTCAGTTGCACTAC 59.364 41.667 0.00 0.00 34.33 2.73
3517 3800 6.237648 GCAACATAGCATGCTCAATTACAAAC 60.238 38.462 26.57 1.60 39.46 2.93
3569 3852 0.251077 CAAGCTGTCCTTCTGCCCTT 60.251 55.000 0.00 0.00 41.02 3.95
3575 3858 0.875059 GTCCTTCTGCCCTTTTGACG 59.125 55.000 0.00 0.00 0.00 4.35
3605 3891 7.651304 TGCTTTGTTGTTGTTCCTTATTATGTG 59.349 33.333 0.00 0.00 0.00 3.21
3673 4042 1.993370 GCACATGTACTCGTGTCTTCC 59.007 52.381 14.18 0.00 41.25 3.46
3775 4204 7.993101 TGATTAATGCATTTCCTCTCTTTCTG 58.007 34.615 18.75 0.00 0.00 3.02
3803 4232 7.588143 ATGACTCTTTTGACAGTTTATCTCG 57.412 36.000 0.00 0.00 0.00 4.04
3810 4595 2.037902 TGACAGTTTATCTCGGTTGCCA 59.962 45.455 0.00 0.00 0.00 4.92
3839 4624 5.441500 TCATGCCGGATTATTTACTTCCAA 58.558 37.500 5.05 0.00 0.00 3.53
3949 4736 4.973168 TCATGGGCAAGTCCATTAGATAC 58.027 43.478 2.88 0.00 44.55 2.24
3962 4749 4.346418 CCATTAGATACAGGGAGAAGCTGT 59.654 45.833 0.00 0.00 35.35 4.40
3975 4762 3.683802 AGAAGCTGTTCAAAGATCCCAG 58.316 45.455 0.00 0.00 34.82 4.45
4010 4797 8.650143 ACAATATGGAACTAACCAACTGAATT 57.350 30.769 0.00 0.00 43.47 2.17
4231 5497 8.630054 ATTTGTACAGGTTTTATGTAGCAGAA 57.370 30.769 0.00 0.00 33.94 3.02
4339 5605 3.488721 GCCACATCATGCTGTCAGATTTC 60.489 47.826 3.32 0.00 0.00 2.17
4365 5631 2.158885 TGTCCCTTCGTTGTGATGTGAA 60.159 45.455 0.00 0.00 0.00 3.18
4678 5944 3.969976 CTGAGATCATAAAGGGTGAGGGA 59.030 47.826 0.00 0.00 0.00 4.20
4924 6190 1.812571 ACAGAAATAAAGCAGCACCCG 59.187 47.619 0.00 0.00 0.00 5.28
5187 6454 5.152623 TGTAGATGGCATATGTTCCTAGC 57.847 43.478 4.57 0.00 0.00 3.42
5204 6471 0.107831 AGCGTTGTTGGTAAGCTCCA 59.892 50.000 0.00 0.00 31.94 3.86
5253 6520 1.771255 ACATTGGATGGGAGCCTCTAC 59.229 52.381 0.00 0.00 33.60 2.59
5280 6547 5.053145 GTGTAAGCTGTAATCCCTCATCAG 58.947 45.833 0.00 0.00 0.00 2.90
5303 6570 7.455008 TCAGTTATTGAGAAGTAGGGTCTCTTT 59.545 37.037 3.34 0.00 41.80 2.52
5354 6621 1.256117 GCAACTGCTGTTTTGAAAGCG 59.744 47.619 6.20 0.00 42.54 4.68
5371 6638 3.906720 AGCGATATTTGGTGGTGTACT 57.093 42.857 0.00 0.00 0.00 2.73
5468 6735 5.123186 TGGTATGTATTTCTTCAAGTTGCCG 59.877 40.000 0.00 0.00 0.00 5.69
5496 6763 7.232941 TCCCTGAGTTCAGTAATACCTATAAGC 59.767 40.741 8.23 0.00 42.27 3.09
5497 6764 7.233757 CCCTGAGTTCAGTAATACCTATAAGCT 59.766 40.741 8.23 0.00 42.27 3.74
5498 6765 8.085296 CCTGAGTTCAGTAATACCTATAAGCTG 58.915 40.741 8.23 0.00 42.27 4.24
5500 6767 9.636789 TGAGTTCAGTAATACCTATAAGCTGTA 57.363 33.333 0.00 0.00 0.00 2.74
5503 6770 9.141400 GTTCAGTAATACCTATAAGCTGTATGC 57.859 37.037 0.00 0.00 43.29 3.14
5535 7185 2.342648 GGAACTCGTCCTGCCGTT 59.657 61.111 0.00 0.00 43.98 4.44
5549 7200 0.249699 GCCGTTTGAAAAACAGGGGG 60.250 55.000 12.38 4.10 0.00 5.40
5552 7203 2.168728 CCGTTTGAAAAACAGGGGGAAA 59.831 45.455 3.97 0.00 0.00 3.13
5567 7218 5.648092 CAGGGGGAAACTAAGATGTTACAAG 59.352 44.000 0.00 0.00 0.00 3.16
5569 7220 5.280830 GGGGGAAACTAAGATGTTACAAGGA 60.281 44.000 0.00 0.00 0.00 3.36
5581 7232 6.765036 AGATGTTACAAGGATAATGCTCAGTG 59.235 38.462 0.00 0.00 0.00 3.66
5582 7233 5.185454 TGTTACAAGGATAATGCTCAGTGG 58.815 41.667 0.00 0.00 0.00 4.00
5583 7234 5.186198 GTTACAAGGATAATGCTCAGTGGT 58.814 41.667 0.00 0.00 0.00 4.16
5584 7235 6.070481 TGTTACAAGGATAATGCTCAGTGGTA 60.070 38.462 0.00 0.00 0.00 3.25
5585 7236 5.028549 ACAAGGATAATGCTCAGTGGTAG 57.971 43.478 0.00 0.00 0.00 3.18
5586 7237 4.471386 ACAAGGATAATGCTCAGTGGTAGT 59.529 41.667 0.00 0.00 0.00 2.73
5587 7238 4.679373 AGGATAATGCTCAGTGGTAGTG 57.321 45.455 0.00 0.00 0.00 2.74
5588 7239 4.033709 AGGATAATGCTCAGTGGTAGTGT 58.966 43.478 0.00 0.00 0.00 3.55
5589 7240 4.122776 GGATAATGCTCAGTGGTAGTGTG 58.877 47.826 0.00 0.00 0.00 3.82
5590 7241 4.383118 GGATAATGCTCAGTGGTAGTGTGT 60.383 45.833 0.00 0.00 0.00 3.72
5591 7242 2.462456 ATGCTCAGTGGTAGTGTGTG 57.538 50.000 0.00 0.00 0.00 3.82
5597 7248 1.273606 CAGTGGTAGTGTGTGGAGGAG 59.726 57.143 0.00 0.00 0.00 3.69
5606 7257 3.193691 AGTGTGTGGAGGAGTAATCTTCG 59.806 47.826 0.00 0.00 0.00 3.79
5610 7261 2.022195 TGGAGGAGTAATCTTCGGACG 58.978 52.381 0.00 0.00 0.00 4.79
5618 7269 0.615544 AATCTTCGGACGGGGTGGTA 60.616 55.000 0.00 0.00 0.00 3.25
5619 7270 1.041447 ATCTTCGGACGGGGTGGTAG 61.041 60.000 0.00 0.00 0.00 3.18
5620 7271 1.980772 CTTCGGACGGGGTGGTAGT 60.981 63.158 0.00 0.00 0.00 2.73
5621 7272 0.680921 CTTCGGACGGGGTGGTAGTA 60.681 60.000 0.00 0.00 0.00 1.82
5622 7273 0.680921 TTCGGACGGGGTGGTAGTAG 60.681 60.000 0.00 0.00 0.00 2.57
5625 7276 0.754587 GGACGGGGTGGTAGTAGAGG 60.755 65.000 0.00 0.00 0.00 3.69
5626 7277 0.257039 GACGGGGTGGTAGTAGAGGA 59.743 60.000 0.00 0.00 0.00 3.71
5627 7278 0.932211 ACGGGGTGGTAGTAGAGGAT 59.068 55.000 0.00 0.00 0.00 3.24
5628 7279 1.290130 ACGGGGTGGTAGTAGAGGATT 59.710 52.381 0.00 0.00 0.00 3.01
5629 7280 2.515429 ACGGGGTGGTAGTAGAGGATTA 59.485 50.000 0.00 0.00 0.00 1.75
5631 7282 3.436180 CGGGGTGGTAGTAGAGGATTACT 60.436 52.174 0.00 0.00 37.61 2.24
5632 7283 4.202503 CGGGGTGGTAGTAGAGGATTACTA 60.203 50.000 0.00 0.00 35.57 1.82
5633 7284 5.516238 CGGGGTGGTAGTAGAGGATTACTAT 60.516 48.000 0.00 0.00 38.15 2.12
5634 7285 5.715753 GGGGTGGTAGTAGAGGATTACTATG 59.284 48.000 0.00 0.00 38.15 2.23
5636 7287 6.781507 GGGTGGTAGTAGAGGATTACTATGTT 59.218 42.308 0.00 0.00 38.15 2.71
5637 7288 7.289549 GGGTGGTAGTAGAGGATTACTATGTTT 59.710 40.741 0.00 0.00 38.15 2.83
5639 7290 8.358895 GTGGTAGTAGAGGATTACTATGTTTCC 58.641 40.741 0.00 0.00 38.15 3.13
5641 7292 7.446625 GGTAGTAGAGGATTACTATGTTTCCGA 59.553 40.741 0.00 0.00 38.15 4.55
5642 7293 7.513371 AGTAGAGGATTACTATGTTTCCGAG 57.487 40.000 0.00 0.00 32.25 4.63
5657 7339 1.597854 CGAGTGGGTTGCTGCTTGA 60.598 57.895 0.00 0.00 0.00 3.02
5658 7340 1.572085 CGAGTGGGTTGCTGCTTGAG 61.572 60.000 0.00 0.00 0.00 3.02
5691 7373 5.392165 GCTACTGATGATACCGTAGTGGATC 60.392 48.000 0.00 0.00 42.00 3.36
5791 7477 4.672862 CACTAGTTCTGATATGTCTTCGCG 59.327 45.833 0.00 0.00 0.00 5.87
5835 7521 9.853555 CAATAAAATAACAGTGTTCAATGGCTA 57.146 29.630 12.82 0.00 0.00 3.93
5885 7572 2.938451 TCACATTCGGATCATGTCTTGC 59.062 45.455 0.00 0.00 32.25 4.01
5906 7593 3.734735 GCTTTCTATAGAACCGCCTTACG 59.265 47.826 14.85 0.00 43.15 3.18
5916 7603 3.107447 GCCTTACGATTTGCCCCG 58.893 61.111 0.00 0.00 0.00 5.73
6048 7740 5.312443 ACTTGATCCCAAAGTACTAGGGTTT 59.688 40.000 25.00 17.09 43.31 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.998099 TTGGTGTCGCATGAAAATGAA 57.002 38.095 0.00 0.00 0.00 2.57
1 2 3.998099 TTTGGTGTCGCATGAAAATGA 57.002 38.095 0.00 0.00 0.00 2.57
2 3 3.120923 GCTTTTGGTGTCGCATGAAAATG 60.121 43.478 0.00 0.00 0.00 2.32
4 5 2.468831 GCTTTTGGTGTCGCATGAAAA 58.531 42.857 0.00 0.00 0.00 2.29
5 6 1.599171 CGCTTTTGGTGTCGCATGAAA 60.599 47.619 0.00 0.00 0.00 2.69
6 7 0.040514 CGCTTTTGGTGTCGCATGAA 60.041 50.000 0.00 0.00 0.00 2.57
7 8 1.573932 CGCTTTTGGTGTCGCATGA 59.426 52.632 0.00 0.00 0.00 3.07
8 9 1.442520 CCGCTTTTGGTGTCGCATG 60.443 57.895 0.00 0.00 0.00 4.06
10 11 3.959975 GCCGCTTTTGGTGTCGCA 61.960 61.111 0.00 0.00 0.00 5.10
13 14 3.680786 GGGGCCGCTTTTGGTGTC 61.681 66.667 13.57 0.00 0.00 3.67
14 15 4.218686 AGGGGCCGCTTTTGGTGT 62.219 61.111 18.22 0.00 0.00 4.16
15 16 3.683937 CAGGGGCCGCTTTTGGTG 61.684 66.667 21.66 4.67 0.00 4.17
16 17 4.218686 ACAGGGGCCGCTTTTGGT 62.219 61.111 21.66 12.30 0.00 3.67
18 19 3.373565 GGACAGGGGCCGCTTTTG 61.374 66.667 21.66 12.90 0.00 2.44
19 20 3.444818 TTGGACAGGGGCCGCTTTT 62.445 57.895 21.66 10.26 0.00 2.27
20 21 3.897122 TTGGACAGGGGCCGCTTT 61.897 61.111 21.66 15.04 0.00 3.51
21 22 4.660938 GTTGGACAGGGGCCGCTT 62.661 66.667 21.66 11.82 0.00 4.68
25 26 3.868200 CTGTGGTTGGACAGGGGCC 62.868 68.421 0.00 0.00 39.85 5.80
26 27 2.282462 CTGTGGTTGGACAGGGGC 60.282 66.667 0.00 0.00 39.85 5.80
30 31 3.254629 CCATCCTGTGGTTGGACAG 57.745 57.895 7.71 0.00 43.30 3.51
43 44 1.133136 TGGCTACCTAGAGGACCATCC 60.133 57.143 1.60 0.00 38.94 3.51
44 45 2.383442 TGGCTACCTAGAGGACCATC 57.617 55.000 1.60 0.00 38.94 3.51
45 46 4.487282 TTATGGCTACCTAGAGGACCAT 57.513 45.455 19.36 19.36 43.68 3.55
46 47 3.985553 TTATGGCTACCTAGAGGACCA 57.014 47.619 1.60 7.32 39.28 4.02
47 48 5.827326 AATTTATGGCTACCTAGAGGACC 57.173 43.478 1.60 1.57 38.94 4.46
48 49 6.497606 ACCTAATTTATGGCTACCTAGAGGAC 59.502 42.308 1.60 0.00 38.94 3.85
49 50 6.497259 CACCTAATTTATGGCTACCTAGAGGA 59.503 42.308 1.60 0.00 38.94 3.71
50 51 6.702329 CACCTAATTTATGGCTACCTAGAGG 58.298 44.000 0.00 0.00 42.17 3.69
51 52 6.014156 AGCACCTAATTTATGGCTACCTAGAG 60.014 42.308 0.00 0.00 0.00 2.43
52 53 5.844516 AGCACCTAATTTATGGCTACCTAGA 59.155 40.000 0.00 0.00 0.00 2.43
53 54 6.115448 AGCACCTAATTTATGGCTACCTAG 57.885 41.667 0.00 0.00 0.00 3.02
54 55 5.012768 GGAGCACCTAATTTATGGCTACCTA 59.987 44.000 0.00 0.00 0.00 3.08
55 56 4.202472 GGAGCACCTAATTTATGGCTACCT 60.202 45.833 0.00 0.00 0.00 3.08
56 57 4.072839 GGAGCACCTAATTTATGGCTACC 58.927 47.826 0.00 0.00 0.00 3.18
57 58 4.714632 TGGAGCACCTAATTTATGGCTAC 58.285 43.478 0.71 0.00 37.04 3.58
58 59 4.412199 ACTGGAGCACCTAATTTATGGCTA 59.588 41.667 0.71 0.00 37.04 3.93
59 60 3.203040 ACTGGAGCACCTAATTTATGGCT 59.797 43.478 0.71 0.00 37.04 4.75
60 61 3.555966 ACTGGAGCACCTAATTTATGGC 58.444 45.455 0.71 0.00 37.04 4.40
61 62 6.238374 CGTTTACTGGAGCACCTAATTTATGG 60.238 42.308 0.71 0.00 37.04 2.74
62 63 6.238374 CCGTTTACTGGAGCACCTAATTTATG 60.238 42.308 0.71 0.00 37.04 1.90
63 64 5.820947 CCGTTTACTGGAGCACCTAATTTAT 59.179 40.000 0.71 0.00 37.04 1.40
64 65 5.046448 TCCGTTTACTGGAGCACCTAATTTA 60.046 40.000 0.71 0.00 37.04 1.40
65 66 4.007659 CCGTTTACTGGAGCACCTAATTT 58.992 43.478 0.71 0.00 37.04 1.82
66 67 3.262405 TCCGTTTACTGGAGCACCTAATT 59.738 43.478 0.71 0.00 37.04 1.40
67 68 2.835764 TCCGTTTACTGGAGCACCTAAT 59.164 45.455 0.71 0.00 37.04 1.73
68 69 2.250031 TCCGTTTACTGGAGCACCTAA 58.750 47.619 0.71 0.00 37.04 2.69
69 70 1.927487 TCCGTTTACTGGAGCACCTA 58.073 50.000 0.71 0.00 37.04 3.08
70 71 1.002087 CTTCCGTTTACTGGAGCACCT 59.998 52.381 0.71 0.00 36.72 4.00
71 72 1.001633 TCTTCCGTTTACTGGAGCACC 59.998 52.381 0.00 0.00 36.72 5.01
72 73 2.288886 ACTCTTCCGTTTACTGGAGCAC 60.289 50.000 0.00 0.00 36.72 4.40
73 74 1.968493 ACTCTTCCGTTTACTGGAGCA 59.032 47.619 0.00 0.00 36.72 4.26
74 75 2.338500 CACTCTTCCGTTTACTGGAGC 58.662 52.381 0.00 0.00 36.72 4.70
75 76 2.561419 TCCACTCTTCCGTTTACTGGAG 59.439 50.000 0.00 0.00 36.72 3.86
76 77 2.600790 TCCACTCTTCCGTTTACTGGA 58.399 47.619 0.00 0.00 0.00 3.86
77 78 3.396260 TTCCACTCTTCCGTTTACTGG 57.604 47.619 0.00 0.00 0.00 4.00
78 79 5.744666 TTTTTCCACTCTTCCGTTTACTG 57.255 39.130 0.00 0.00 0.00 2.74
79 80 8.631480 AATATTTTTCCACTCTTCCGTTTACT 57.369 30.769 0.00 0.00 0.00 2.24
82 83 9.292195 TCTAAATATTTTTCCACTCTTCCGTTT 57.708 29.630 5.91 0.00 0.00 3.60
83 84 8.727910 GTCTAAATATTTTTCCACTCTTCCGTT 58.272 33.333 5.91 0.00 0.00 4.44
84 85 8.101419 AGTCTAAATATTTTTCCACTCTTCCGT 58.899 33.333 5.91 0.00 0.00 4.69
85 86 8.494016 AGTCTAAATATTTTTCCACTCTTCCG 57.506 34.615 5.91 0.00 0.00 4.30
96 97 9.449719 CCCACTGTGACTAGTCTAAATATTTTT 57.550 33.333 23.01 0.00 0.00 1.94
97 98 8.822805 TCCCACTGTGACTAGTCTAAATATTTT 58.177 33.333 23.01 0.00 0.00 1.82
98 99 8.375493 TCCCACTGTGACTAGTCTAAATATTT 57.625 34.615 23.01 5.89 0.00 1.40
99 100 7.620094 ACTCCCACTGTGACTAGTCTAAATATT 59.380 37.037 23.01 0.00 0.00 1.28
100 101 7.126733 ACTCCCACTGTGACTAGTCTAAATAT 58.873 38.462 23.01 2.22 0.00 1.28
101 102 6.491383 ACTCCCACTGTGACTAGTCTAAATA 58.509 40.000 23.01 0.00 0.00 1.40
102 103 5.334421 ACTCCCACTGTGACTAGTCTAAAT 58.666 41.667 23.01 4.63 0.00 1.40
103 104 4.737578 ACTCCCACTGTGACTAGTCTAAA 58.262 43.478 23.01 8.25 0.00 1.85
104 105 4.383931 ACTCCCACTGTGACTAGTCTAA 57.616 45.455 23.01 10.61 0.00 2.10
105 106 5.013913 AGTTACTCCCACTGTGACTAGTCTA 59.986 44.000 23.01 11.56 33.46 2.59
106 107 2.982339 ACTCCCACTGTGACTAGTCT 57.018 50.000 23.01 0.19 0.00 3.24
107 108 4.080687 AGTTACTCCCACTGTGACTAGTC 58.919 47.826 16.32 16.32 33.46 2.59
108 109 4.115398 AGTTACTCCCACTGTGACTAGT 57.885 45.455 9.86 11.33 33.46 2.57
109 110 4.523173 TGAAGTTACTCCCACTGTGACTAG 59.477 45.833 9.86 5.97 33.98 2.57
110 111 4.476297 TGAAGTTACTCCCACTGTGACTA 58.524 43.478 9.86 0.00 33.98 2.59
111 112 3.305720 TGAAGTTACTCCCACTGTGACT 58.694 45.455 9.86 0.30 36.11 3.41
112 113 3.069729 ACTGAAGTTACTCCCACTGTGAC 59.930 47.826 9.86 0.00 0.00 3.67
113 114 3.305720 ACTGAAGTTACTCCCACTGTGA 58.694 45.455 9.86 0.00 0.00 3.58
114 115 3.753294 ACTGAAGTTACTCCCACTGTG 57.247 47.619 0.00 0.00 0.00 3.66
115 116 4.481072 ACTACTGAAGTTACTCCCACTGT 58.519 43.478 0.00 0.00 33.35 3.55
116 117 6.015688 TGTTACTACTGAAGTTACTCCCACTG 60.016 42.308 0.00 0.00 38.33 3.66
117 118 6.073314 TGTTACTACTGAAGTTACTCCCACT 58.927 40.000 0.00 0.00 38.33 4.00
118 119 6.336842 TGTTACTACTGAAGTTACTCCCAC 57.663 41.667 0.00 0.00 38.33 4.61
119 120 6.127814 CGATGTTACTACTGAAGTTACTCCCA 60.128 42.308 0.00 0.00 38.33 4.37
120 121 6.094603 TCGATGTTACTACTGAAGTTACTCCC 59.905 42.308 0.00 0.00 38.33 4.30
121 122 7.081526 TCGATGTTACTACTGAAGTTACTCC 57.918 40.000 0.00 0.00 38.33 3.85
122 123 7.750769 ACTCGATGTTACTACTGAAGTTACTC 58.249 38.462 0.00 0.00 38.33 2.59
123 124 7.148272 GGACTCGATGTTACTACTGAAGTTACT 60.148 40.741 0.00 0.00 38.33 2.24
124 125 6.966066 GGACTCGATGTTACTACTGAAGTTAC 59.034 42.308 0.00 0.00 39.80 2.50
125 126 6.656270 TGGACTCGATGTTACTACTGAAGTTA 59.344 38.462 0.00 0.00 39.80 2.24
126 127 5.475909 TGGACTCGATGTTACTACTGAAGTT 59.524 40.000 0.00 0.00 39.80 2.66
127 128 5.008331 TGGACTCGATGTTACTACTGAAGT 58.992 41.667 0.00 0.00 42.62 3.01
128 129 5.562506 TGGACTCGATGTTACTACTGAAG 57.437 43.478 0.00 0.00 0.00 3.02
129 130 5.475909 AGTTGGACTCGATGTTACTACTGAA 59.524 40.000 0.00 0.00 0.00 3.02
130 131 5.008331 AGTTGGACTCGATGTTACTACTGA 58.992 41.667 0.00 0.00 0.00 3.41
131 132 5.312120 AGTTGGACTCGATGTTACTACTG 57.688 43.478 0.00 0.00 0.00 2.74
132 133 5.564048 GAGTTGGACTCGATGTTACTACT 57.436 43.478 0.00 0.00 35.28 2.57
144 145 3.615849 CAAAGTTGCTGAGTTGGACTC 57.384 47.619 1.21 1.21 45.26 3.36
163 164 5.651576 TCATTAACTCATTGCCACATAAGCA 59.348 36.000 0.00 0.00 38.81 3.91
164 165 6.135290 TCATTAACTCATTGCCACATAAGC 57.865 37.500 0.00 0.00 0.00 3.09
165 166 7.988737 TCTTCATTAACTCATTGCCACATAAG 58.011 34.615 0.00 0.00 0.00 1.73
166 167 7.828717 TCTCTTCATTAACTCATTGCCACATAA 59.171 33.333 0.00 0.00 0.00 1.90
167 168 7.337938 TCTCTTCATTAACTCATTGCCACATA 58.662 34.615 0.00 0.00 0.00 2.29
168 169 6.182627 TCTCTTCATTAACTCATTGCCACAT 58.817 36.000 0.00 0.00 0.00 3.21
169 170 5.559770 TCTCTTCATTAACTCATTGCCACA 58.440 37.500 0.00 0.00 0.00 4.17
170 171 5.877012 TCTCTCTTCATTAACTCATTGCCAC 59.123 40.000 0.00 0.00 0.00 5.01
171 172 6.053632 TCTCTCTTCATTAACTCATTGCCA 57.946 37.500 0.00 0.00 0.00 4.92
172 173 5.526846 CCTCTCTCTTCATTAACTCATTGCC 59.473 44.000 0.00 0.00 0.00 4.52
173 174 6.112058 ACCTCTCTCTTCATTAACTCATTGC 58.888 40.000 0.00 0.00 0.00 3.56
174 175 8.474025 ACTACCTCTCTCTTCATTAACTCATTG 58.526 37.037 0.00 0.00 0.00 2.82
175 176 8.602472 ACTACCTCTCTCTTCATTAACTCATT 57.398 34.615 0.00 0.00 0.00 2.57
176 177 8.602472 AACTACCTCTCTCTTCATTAACTCAT 57.398 34.615 0.00 0.00 0.00 2.90
177 178 8.958506 GTAACTACCTCTCTCTTCATTAACTCA 58.041 37.037 0.00 0.00 0.00 3.41
178 179 8.958506 TGTAACTACCTCTCTCTTCATTAACTC 58.041 37.037 0.00 0.00 0.00 3.01
179 180 8.880991 TGTAACTACCTCTCTCTTCATTAACT 57.119 34.615 0.00 0.00 0.00 2.24
180 181 8.741841 ACTGTAACTACCTCTCTCTTCATTAAC 58.258 37.037 0.00 0.00 0.00 2.01
181 182 8.880991 ACTGTAACTACCTCTCTCTTCATTAA 57.119 34.615 0.00 0.00 0.00 1.40
182 183 9.970553 TTACTGTAACTACCTCTCTCTTCATTA 57.029 33.333 0.00 0.00 0.00 1.90
183 184 8.741841 GTTACTGTAACTACCTCTCTCTTCATT 58.258 37.037 20.50 0.00 35.81 2.57
184 185 8.110908 AGTTACTGTAACTACCTCTCTCTTCAT 58.889 37.037 27.01 2.44 46.53 2.57
185 186 7.460071 AGTTACTGTAACTACCTCTCTCTTCA 58.540 38.462 27.01 0.00 46.53 3.02
186 187 7.926674 AGTTACTGTAACTACCTCTCTCTTC 57.073 40.000 27.01 0.04 46.53 2.87
211 212 9.850628 GACATGTGATGTTACAGTAACTAGTTA 57.149 33.333 21.56 11.38 45.03 2.24
212 213 7.817962 GGACATGTGATGTTACAGTAACTAGTT 59.182 37.037 21.56 13.68 45.03 2.24
213 214 7.321153 GGACATGTGATGTTACAGTAACTAGT 58.679 38.462 21.56 9.82 45.03 2.57
214 215 6.757010 GGGACATGTGATGTTACAGTAACTAG 59.243 42.308 21.56 8.25 45.03 2.57
215 216 6.211785 TGGGACATGTGATGTTACAGTAACTA 59.788 38.462 21.56 10.50 45.03 2.24
216 217 5.012664 TGGGACATGTGATGTTACAGTAACT 59.987 40.000 21.56 9.41 45.03 2.24
217 218 5.242434 TGGGACATGTGATGTTACAGTAAC 58.758 41.667 15.58 15.58 45.03 2.50
218 219 5.491323 TGGGACATGTGATGTTACAGTAA 57.509 39.130 1.15 0.00 45.03 2.24
219 220 5.491323 TTGGGACATGTGATGTTACAGTA 57.509 39.130 1.15 0.00 45.03 2.74
220 221 4.365514 TTGGGACATGTGATGTTACAGT 57.634 40.909 1.15 0.00 45.03 3.55
221 222 4.439153 GCATTGGGACATGTGATGTTACAG 60.439 45.833 1.15 0.00 45.03 2.74
222 223 3.443329 GCATTGGGACATGTGATGTTACA 59.557 43.478 1.15 0.00 45.03 2.41
223 224 3.443329 TGCATTGGGACATGTGATGTTAC 59.557 43.478 1.15 0.00 45.03 2.50
224 225 3.694926 TGCATTGGGACATGTGATGTTA 58.305 40.909 1.15 0.00 45.03 2.41
225 226 2.527497 TGCATTGGGACATGTGATGTT 58.473 42.857 1.15 0.00 45.03 2.71
227 228 3.812156 ATTGCATTGGGACATGTGATG 57.188 42.857 1.15 3.48 39.30 3.07
228 229 5.141910 TCATATTGCATTGGGACATGTGAT 58.858 37.500 1.15 0.00 39.30 3.06
229 230 4.534797 TCATATTGCATTGGGACATGTGA 58.465 39.130 1.15 0.00 39.30 3.58
230 231 4.340097 ACTCATATTGCATTGGGACATGTG 59.660 41.667 1.15 0.00 39.30 3.21
231 232 4.539726 ACTCATATTGCATTGGGACATGT 58.460 39.130 0.00 0.00 39.30 3.21
232 233 4.825634 AGACTCATATTGCATTGGGACATG 59.174 41.667 0.00 0.00 39.30 3.21
233 234 5.057843 AGACTCATATTGCATTGGGACAT 57.942 39.130 0.00 0.00 39.30 3.06
234 235 4.508551 AGACTCATATTGCATTGGGACA 57.491 40.909 0.00 0.00 0.00 4.02
235 236 7.119846 GGTTATAGACTCATATTGCATTGGGAC 59.880 40.741 0.00 0.00 0.00 4.46
236 237 7.017551 AGGTTATAGACTCATATTGCATTGGGA 59.982 37.037 0.00 0.00 0.00 4.37
237 238 7.170965 AGGTTATAGACTCATATTGCATTGGG 58.829 38.462 0.00 0.00 0.00 4.12
238 239 9.725019 TTAGGTTATAGACTCATATTGCATTGG 57.275 33.333 0.00 0.00 0.00 3.16
256 257 9.754382 CATGCAAAGCTTCATTTATTAGGTTAT 57.246 29.630 0.00 0.00 0.00 1.89
257 258 8.748412 ACATGCAAAGCTTCATTTATTAGGTTA 58.252 29.630 0.00 0.00 0.00 2.85
258 259 7.614494 ACATGCAAAGCTTCATTTATTAGGTT 58.386 30.769 0.00 0.00 0.00 3.50
259 260 7.174107 ACATGCAAAGCTTCATTTATTAGGT 57.826 32.000 0.00 0.00 0.00 3.08
260 261 9.023967 GTAACATGCAAAGCTTCATTTATTAGG 57.976 33.333 0.00 0.00 0.00 2.69
261 262 9.023967 GGTAACATGCAAAGCTTCATTTATTAG 57.976 33.333 0.00 0.00 0.00 1.73
262 263 8.526978 TGGTAACATGCAAAGCTTCATTTATTA 58.473 29.630 0.00 0.00 46.17 0.98
263 264 7.385267 TGGTAACATGCAAAGCTTCATTTATT 58.615 30.769 0.00 0.00 46.17 1.40
264 265 6.934056 TGGTAACATGCAAAGCTTCATTTAT 58.066 32.000 0.00 0.00 46.17 1.40
265 266 6.338214 TGGTAACATGCAAAGCTTCATTTA 57.662 33.333 0.00 0.18 46.17 1.40
266 267 5.212532 TGGTAACATGCAAAGCTTCATTT 57.787 34.783 0.00 1.04 46.17 2.32
267 268 4.870123 TGGTAACATGCAAAGCTTCATT 57.130 36.364 0.00 0.00 46.17 2.57
282 283 8.699130 AGTGGGTAGTAATATAAGTGTGGTAAC 58.301 37.037 0.00 0.00 0.00 2.50
283 284 8.843308 AGTGGGTAGTAATATAAGTGTGGTAA 57.157 34.615 0.00 0.00 0.00 2.85
285 286 8.867097 CATAGTGGGTAGTAATATAAGTGTGGT 58.133 37.037 0.00 0.00 0.00 4.16
286 287 9.085645 TCATAGTGGGTAGTAATATAAGTGTGG 57.914 37.037 0.00 0.00 0.00 4.17
347 348 9.056005 CCACAATGCATAATAACATACACTAGT 57.944 33.333 0.00 0.00 0.00 2.57
348 349 8.017373 GCCACAATGCATAATAACATACACTAG 58.983 37.037 0.00 0.00 0.00 2.57
349 350 7.719193 AGCCACAATGCATAATAACATACACTA 59.281 33.333 0.00 0.00 0.00 2.74
350 351 6.547141 AGCCACAATGCATAATAACATACACT 59.453 34.615 0.00 0.00 0.00 3.55
351 352 6.738114 AGCCACAATGCATAATAACATACAC 58.262 36.000 0.00 0.00 0.00 2.90
352 353 6.957920 AGCCACAATGCATAATAACATACA 57.042 33.333 0.00 0.00 0.00 2.29
353 354 8.099364 ACTAGCCACAATGCATAATAACATAC 57.901 34.615 0.00 0.00 0.00 2.39
354 355 8.156820 AGACTAGCCACAATGCATAATAACATA 58.843 33.333 0.00 0.00 0.00 2.29
355 356 7.000472 AGACTAGCCACAATGCATAATAACAT 59.000 34.615 0.00 0.00 0.00 2.71
356 357 6.356556 AGACTAGCCACAATGCATAATAACA 58.643 36.000 0.00 0.00 0.00 2.41
357 358 6.867662 AGACTAGCCACAATGCATAATAAC 57.132 37.500 0.00 0.00 0.00 1.89
358 359 7.990314 TGTAAGACTAGCCACAATGCATAATAA 59.010 33.333 0.00 0.00 0.00 1.40
359 360 7.441157 GTGTAAGACTAGCCACAATGCATAATA 59.559 37.037 0.00 0.00 0.00 0.98
360 361 6.260936 GTGTAAGACTAGCCACAATGCATAAT 59.739 38.462 0.00 0.00 0.00 1.28
361 362 5.584649 GTGTAAGACTAGCCACAATGCATAA 59.415 40.000 0.00 0.00 0.00 1.90
362 363 5.116180 GTGTAAGACTAGCCACAATGCATA 58.884 41.667 0.00 0.00 0.00 3.14
363 364 3.941483 GTGTAAGACTAGCCACAATGCAT 59.059 43.478 0.00 0.00 0.00 3.96
364 365 3.334691 GTGTAAGACTAGCCACAATGCA 58.665 45.455 0.00 0.00 0.00 3.96
365 366 2.348666 CGTGTAAGACTAGCCACAATGC 59.651 50.000 0.00 0.00 0.00 3.56
366 367 2.930040 CCGTGTAAGACTAGCCACAATG 59.070 50.000 0.00 0.00 0.00 2.82
367 368 2.677037 GCCGTGTAAGACTAGCCACAAT 60.677 50.000 0.00 0.00 0.00 2.71
368 369 1.337447 GCCGTGTAAGACTAGCCACAA 60.337 52.381 0.00 0.00 0.00 3.33
369 370 0.245539 GCCGTGTAAGACTAGCCACA 59.754 55.000 0.00 0.00 0.00 4.17
370 371 0.245539 TGCCGTGTAAGACTAGCCAC 59.754 55.000 0.00 0.00 0.00 5.01
371 372 0.530744 CTGCCGTGTAAGACTAGCCA 59.469 55.000 0.00 0.00 0.00 4.75
372 373 0.179108 CCTGCCGTGTAAGACTAGCC 60.179 60.000 0.00 0.00 0.00 3.93
373 374 0.179108 CCCTGCCGTGTAAGACTAGC 60.179 60.000 0.00 0.00 0.00 3.42
374 375 1.471119 TCCCTGCCGTGTAAGACTAG 58.529 55.000 0.00 0.00 0.00 2.57
375 376 1.822990 CTTCCCTGCCGTGTAAGACTA 59.177 52.381 0.00 0.00 0.00 2.59
376 377 0.608640 CTTCCCTGCCGTGTAAGACT 59.391 55.000 0.00 0.00 0.00 3.24
377 378 0.391263 CCTTCCCTGCCGTGTAAGAC 60.391 60.000 0.00 0.00 0.00 3.01
378 379 0.834687 ACCTTCCCTGCCGTGTAAGA 60.835 55.000 0.00 0.00 0.00 2.10
379 380 0.673644 CACCTTCCCTGCCGTGTAAG 60.674 60.000 0.00 0.00 0.00 2.34
380 381 1.373435 CACCTTCCCTGCCGTGTAA 59.627 57.895 0.00 0.00 0.00 2.41
381 382 0.542467 TACACCTTCCCTGCCGTGTA 60.542 55.000 0.00 0.00 39.94 2.90
382 383 1.412453 TTACACCTTCCCTGCCGTGT 61.412 55.000 0.00 0.00 41.98 4.49
383 384 0.035439 ATTACACCTTCCCTGCCGTG 60.035 55.000 0.00 0.00 0.00 4.94
384 385 1.575419 TATTACACCTTCCCTGCCGT 58.425 50.000 0.00 0.00 0.00 5.68
385 386 2.930826 ATATTACACCTTCCCTGCCG 57.069 50.000 0.00 0.00 0.00 5.69
386 387 7.094933 CGTATAAAATATTACACCTTCCCTGCC 60.095 40.741 0.00 0.00 0.00 4.85
387 388 7.658575 TCGTATAAAATATTACACCTTCCCTGC 59.341 37.037 0.00 0.00 0.00 4.85
388 389 9.720769 ATCGTATAAAATATTACACCTTCCCTG 57.279 33.333 0.00 0.00 0.00 4.45
389 390 9.720769 CATCGTATAAAATATTACACCTTCCCT 57.279 33.333 0.00 0.00 0.00 4.20
390 391 9.715121 TCATCGTATAAAATATTACACCTTCCC 57.285 33.333 0.00 0.00 0.00 3.97
402 403 9.878667 TCTCCACACTTTTCATCGTATAAAATA 57.121 29.630 0.00 0.00 0.00 1.40
403 404 8.786826 TCTCCACACTTTTCATCGTATAAAAT 57.213 30.769 0.00 0.00 0.00 1.82
404 405 8.786826 ATCTCCACACTTTTCATCGTATAAAA 57.213 30.769 0.00 0.00 0.00 1.52
405 406 7.222031 CGATCTCCACACTTTTCATCGTATAAA 59.778 37.037 0.00 0.00 0.00 1.40
406 407 6.695713 CGATCTCCACACTTTTCATCGTATAA 59.304 38.462 0.00 0.00 0.00 0.98
407 408 6.206498 CGATCTCCACACTTTTCATCGTATA 58.794 40.000 0.00 0.00 0.00 1.47
408 409 5.043903 CGATCTCCACACTTTTCATCGTAT 58.956 41.667 0.00 0.00 0.00 3.06
409 410 4.421058 CGATCTCCACACTTTTCATCGTA 58.579 43.478 0.00 0.00 0.00 3.43
410 411 3.254060 CGATCTCCACACTTTTCATCGT 58.746 45.455 0.00 0.00 0.00 3.73
411 412 2.604914 CCGATCTCCACACTTTTCATCG 59.395 50.000 0.00 0.00 33.16 3.84
412 413 3.861840 TCCGATCTCCACACTTTTCATC 58.138 45.455 0.00 0.00 0.00 2.92
413 414 3.981071 TCCGATCTCCACACTTTTCAT 57.019 42.857 0.00 0.00 0.00 2.57
414 415 3.323691 TCTTCCGATCTCCACACTTTTCA 59.676 43.478 0.00 0.00 0.00 2.69
415 416 3.926616 TCTTCCGATCTCCACACTTTTC 58.073 45.455 0.00 0.00 0.00 2.29
416 417 3.307059 CCTCTTCCGATCTCCACACTTTT 60.307 47.826 0.00 0.00 0.00 2.27
417 418 2.234908 CCTCTTCCGATCTCCACACTTT 59.765 50.000 0.00 0.00 0.00 2.66
418 419 1.827969 CCTCTTCCGATCTCCACACTT 59.172 52.381 0.00 0.00 0.00 3.16
419 420 1.006043 TCCTCTTCCGATCTCCACACT 59.994 52.381 0.00 0.00 0.00 3.55
420 421 1.407258 CTCCTCTTCCGATCTCCACAC 59.593 57.143 0.00 0.00 0.00 3.82
421 422 1.686428 CCTCCTCTTCCGATCTCCACA 60.686 57.143 0.00 0.00 0.00 4.17
422 423 1.036707 CCTCCTCTTCCGATCTCCAC 58.963 60.000 0.00 0.00 0.00 4.02
423 424 0.757188 GCCTCCTCTTCCGATCTCCA 60.757 60.000 0.00 0.00 0.00 3.86
424 425 0.469144 AGCCTCCTCTTCCGATCTCC 60.469 60.000 0.00 0.00 0.00 3.71
425 426 0.958822 GAGCCTCCTCTTCCGATCTC 59.041 60.000 0.00 0.00 35.16 2.75
426 427 0.555769 AGAGCCTCCTCTTCCGATCT 59.444 55.000 0.00 0.00 46.16 2.75
427 428 3.125520 AGAGCCTCCTCTTCCGATC 57.874 57.895 0.00 0.00 46.16 3.69
435 436 2.301583 AGTGAAAGTGAAGAGCCTCCTC 59.698 50.000 0.00 0.00 38.42 3.71
436 437 2.334023 AGTGAAAGTGAAGAGCCTCCT 58.666 47.619 0.00 0.00 0.00 3.69
437 438 2.849294 AGTGAAAGTGAAGAGCCTCC 57.151 50.000 0.00 0.00 0.00 4.30
438 439 4.153296 GCTTAAGTGAAAGTGAAGAGCCTC 59.847 45.833 4.02 0.00 0.00 4.70
439 440 4.068599 GCTTAAGTGAAAGTGAAGAGCCT 58.931 43.478 4.02 0.00 0.00 4.58
440 441 3.189495 GGCTTAAGTGAAAGTGAAGAGCC 59.811 47.826 4.02 0.00 40.15 4.70
441 442 3.189495 GGGCTTAAGTGAAAGTGAAGAGC 59.811 47.826 4.02 0.00 0.00 4.09
442 443 3.433615 CGGGCTTAAGTGAAAGTGAAGAG 59.566 47.826 4.02 0.00 0.00 2.85
443 444 3.399330 CGGGCTTAAGTGAAAGTGAAGA 58.601 45.455 4.02 0.00 0.00 2.87
444 445 2.484264 CCGGGCTTAAGTGAAAGTGAAG 59.516 50.000 4.02 0.00 0.00 3.02
445 446 2.500229 CCGGGCTTAAGTGAAAGTGAA 58.500 47.619 4.02 0.00 0.00 3.18
446 447 1.880646 GCCGGGCTTAAGTGAAAGTGA 60.881 52.381 12.87 0.00 0.00 3.41
481 482 2.531771 TGAGGGAACGGATTGAGTGTA 58.468 47.619 0.00 0.00 0.00 2.90
515 516 4.252971 ACGAAACGAAGAAGAGAATCCA 57.747 40.909 0.00 0.00 33.66 3.41
516 517 5.593183 AAACGAAACGAAGAAGAGAATCC 57.407 39.130 0.00 0.00 33.66 3.01
610 611 4.707768 TCCTTCGGCTTCGGGGGA 62.708 66.667 0.00 0.00 34.59 4.81
611 612 3.682292 CTTCCTTCGGCTTCGGGGG 62.682 68.421 0.00 0.00 34.13 5.40
612 613 2.125106 CTTCCTTCGGCTTCGGGG 60.125 66.667 0.00 0.00 34.13 5.73
613 614 2.820037 GCTTCCTTCGGCTTCGGG 60.820 66.667 0.00 0.00 34.13 5.14
614 615 3.188786 CGCTTCCTTCGGCTTCGG 61.189 66.667 0.00 0.00 34.13 4.30
682 685 1.005037 TGCTTACTGGTCAGCCGTG 60.005 57.895 4.74 0.00 37.67 4.94
766 770 2.429058 CCGGATGGATCTGGCTGG 59.571 66.667 0.00 0.00 45.63 4.85
908 912 2.974698 GATCAATCAGCGGCCGGG 60.975 66.667 29.38 0.00 0.00 5.73
1083 1087 2.363018 TCCTCGGACTGCCTCCTG 60.363 66.667 0.00 0.00 36.80 3.86
1084 1088 2.043450 CTCCTCGGACTGCCTCCT 60.043 66.667 0.00 0.00 36.80 3.69
1197 1201 1.808945 CCATCAACAGAACTGCAGTCC 59.191 52.381 21.95 7.65 0.00 3.85
1362 1366 1.198094 TCCCGCTCTGGACCAAATCA 61.198 55.000 0.00 0.00 42.00 2.57
1401 1405 3.716539 GACATCACTGCCGGCGCTA 62.717 63.158 23.90 7.57 35.36 4.26
1407 1411 1.004595 CATCACTGACATCACTGCCG 58.995 55.000 0.00 0.00 0.00 5.69
1674 1678 2.828520 CTCCCTTTCAGTCTGTGCTCTA 59.171 50.000 0.00 0.00 0.00 2.43
1680 1684 4.225942 TGCAATATCTCCCTTTCAGTCTGT 59.774 41.667 0.00 0.00 0.00 3.41
1800 1804 2.435805 CTGCTTCTGCCTTAGGGTATGA 59.564 50.000 0.00 0.00 38.71 2.15
2067 2091 7.451731 AATAGAAGAGGACCATATGTTCCAA 57.548 36.000 20.30 0.57 0.00 3.53
2282 2545 2.939103 CGGATTTTGTGATCCCTGAGAC 59.061 50.000 0.00 0.00 42.17 3.36
2466 2729 7.551585 AGGAGAAATCACTACACAGTAATCAG 58.448 38.462 0.00 0.00 32.21 2.90
2530 2793 7.415206 GCCTAGTGTTAATCATAGTTTGGTTGG 60.415 40.741 0.00 0.00 29.37 3.77
2668 2931 5.393027 GGACATGGATGTGTGGTCAAATTAC 60.393 44.000 0.00 0.00 41.95 1.89
2673 2936 1.423161 TGGACATGGATGTGTGGTCAA 59.577 47.619 0.00 0.00 41.95 3.18
2694 2957 9.071276 CATAACTAATAGGAACGTAGGGAGTAA 57.929 37.037 0.00 0.00 0.00 2.24
2713 2976 6.036735 GGTGCTGAGAAATTTACGCATAACTA 59.963 38.462 0.00 0.00 0.00 2.24
2719 2982 1.810151 GGGTGCTGAGAAATTTACGCA 59.190 47.619 0.00 1.32 0.00 5.24
2736 2999 2.160853 GGTTCTCCTTGGGGTGGGT 61.161 63.158 0.00 0.00 0.00 4.51
2752 3015 4.587262 GGGAAACTAATTTTGACTGTGGGT 59.413 41.667 0.00 0.00 0.00 4.51
2770 3033 1.152355 CCAGGGGCAAGTTGGGAAA 60.152 57.895 4.75 0.00 0.00 3.13
2781 3044 3.653835 AGAGAGTAATTTTCCAGGGGC 57.346 47.619 0.00 0.00 0.00 5.80
2812 3075 0.246757 CGCGTCCAAAGAATCGTTCG 60.247 55.000 0.00 0.00 34.02 3.95
2836 3099 4.910304 AGATTGGCTCCACTATTACCTCAT 59.090 41.667 0.00 0.00 0.00 2.90
2837 3100 4.298626 AGATTGGCTCCACTATTACCTCA 58.701 43.478 0.00 0.00 0.00 3.86
2884 3147 9.425577 GATCCCTTAGATTACAGCTACATTAAC 57.574 37.037 0.00 0.00 34.42 2.01
2895 3158 4.202223 GCTGAACGGATCCCTTAGATTACA 60.202 45.833 6.06 0.00 34.42 2.41
2921 3184 9.193133 CATAATACCCTCGTTTAATCACTACTG 57.807 37.037 0.00 0.00 0.00 2.74
2971 3234 5.894298 TCCTGAGAACAAGGCATACATAT 57.106 39.130 0.00 0.00 0.00 1.78
3061 3337 3.745975 TCAAGACTTCAAGTACATTGCCG 59.254 43.478 0.00 0.00 38.89 5.69
3225 3502 8.639761 AGACAGTTGATACGGCTTATAAGTTAT 58.360 33.333 13.91 8.32 0.00 1.89
3226 3503 7.919091 CAGACAGTTGATACGGCTTATAAGTTA 59.081 37.037 13.91 4.14 0.00 2.24
3227 3504 6.757010 CAGACAGTTGATACGGCTTATAAGTT 59.243 38.462 13.91 2.10 0.00 2.66
3228 3505 6.096423 TCAGACAGTTGATACGGCTTATAAGT 59.904 38.462 13.91 0.00 0.00 2.24
3229 3506 6.504398 TCAGACAGTTGATACGGCTTATAAG 58.496 40.000 8.20 8.20 0.00 1.73
3230 3507 6.459670 TCAGACAGTTGATACGGCTTATAA 57.540 37.500 0.00 0.00 0.00 0.98
3231 3508 6.459670 TTCAGACAGTTGATACGGCTTATA 57.540 37.500 0.00 0.00 0.00 0.98
3232 3509 5.339008 TTCAGACAGTTGATACGGCTTAT 57.661 39.130 0.00 0.00 0.00 1.73
3233 3510 4.794278 TTCAGACAGTTGATACGGCTTA 57.206 40.909 0.00 0.00 0.00 3.09
3458 3737 6.803154 AGTACCTTGAAAAATGAGTAGTGC 57.197 37.500 0.00 0.00 0.00 4.40
3464 3743 6.712276 AGACCCTAGTACCTTGAAAAATGAG 58.288 40.000 0.00 0.00 0.00 2.90
3538 3821 4.729868 AGGACAGCTTGTAACTTCCAATT 58.270 39.130 0.00 0.00 0.00 2.32
3541 3824 3.391296 AGAAGGACAGCTTGTAACTTCCA 59.609 43.478 18.55 0.00 41.46 3.53
3542 3825 3.748568 CAGAAGGACAGCTTGTAACTTCC 59.251 47.826 18.55 6.37 41.46 3.46
3543 3826 3.187432 GCAGAAGGACAGCTTGTAACTTC 59.813 47.826 16.54 16.54 41.15 3.01
3569 3852 3.773860 ACAACAAAGCATGACGTCAAA 57.226 38.095 24.13 0.00 0.00 2.69
3575 3858 4.045636 AGGAACAACAACAAAGCATGAC 57.954 40.909 0.00 0.00 0.00 3.06
3631 4000 7.024768 GTGCAGTTGTAGTTCAAAAAGTGTTA 58.975 34.615 0.00 0.00 37.81 2.41
3673 4042 2.038837 GGGGAAAGGGAAACTCGCG 61.039 63.158 0.00 0.00 34.19 5.87
3775 4204 8.787852 AGATAAACTGTCAAAAGAGTCATTTCC 58.212 33.333 0.00 0.00 0.00 3.13
3810 4595 7.346751 AGTAAATAATCCGGCATGAAAACAT 57.653 32.000 0.00 0.00 0.00 2.71
3829 4614 6.502863 ACTGTCCCTAACCTATTGGAAGTAAA 59.497 38.462 0.00 0.00 37.04 2.01
3830 4615 6.027482 ACTGTCCCTAACCTATTGGAAGTAA 58.973 40.000 0.00 0.00 37.04 2.24
3839 4624 1.838077 GCCACACTGTCCCTAACCTAT 59.162 52.381 0.00 0.00 0.00 2.57
3949 4736 3.131709 TCTTTGAACAGCTTCTCCCTG 57.868 47.619 0.00 0.00 36.41 4.45
3962 4749 9.581289 TTGTTAGTATTTTCTGGGATCTTTGAA 57.419 29.630 0.00 0.00 0.00 2.69
4005 4792 4.282957 TGCCACCTTTCAATTAGCAATTCA 59.717 37.500 0.00 0.00 0.00 2.57
4010 4797 3.230134 AGTTGCCACCTTTCAATTAGCA 58.770 40.909 0.00 0.00 0.00 3.49
4339 5605 2.139917 TCACAACGAAGGGACAAATCG 58.860 47.619 0.00 0.00 42.05 3.34
4365 5631 6.697641 TGGAAGATTTAAGAAGTGTAGGGT 57.302 37.500 0.00 0.00 0.00 4.34
4678 5944 1.130054 AGTCCACAGCACTCCCATGT 61.130 55.000 0.00 0.00 0.00 3.21
4903 6169 3.006940 CGGGTGCTGCTTTATTTCTGTA 58.993 45.455 0.00 0.00 0.00 2.74
4924 6190 4.499188 GCCCAGTTAACACCTTCAAAGAAC 60.499 45.833 8.61 0.00 0.00 3.01
5187 6454 3.564511 CAAATGGAGCTTACCAACAACG 58.435 45.455 0.00 0.00 43.47 4.10
5204 6471 3.896888 TGGAGGTGAAATGAACTGCAAAT 59.103 39.130 0.00 0.00 0.00 2.32
5253 6520 2.505819 AGGGATTACAGCTTACACCTGG 59.494 50.000 0.00 0.00 34.65 4.45
5280 6547 7.612677 TCAAAGAGACCCTACTTCTCAATAAC 58.387 38.462 2.40 0.00 41.84 1.89
5303 6570 9.719279 AGAACGAAAACGTTTATTTGTTATTCA 57.281 25.926 15.03 0.00 31.71 2.57
5318 6585 0.302288 TTGCGGACAGAACGAAAACG 59.698 50.000 0.00 0.00 0.00 3.60
5354 6621 4.335594 GCTTCCAGTACACCACCAAATATC 59.664 45.833 0.00 0.00 0.00 1.63
5431 6698 9.212593 AGAAATACATACCAATTTTAAGGGCAT 57.787 29.630 0.00 0.00 0.00 4.40
5432 6699 8.602472 AGAAATACATACCAATTTTAAGGGCA 57.398 30.769 0.00 0.00 0.00 5.36
5444 6711 5.123186 CGGCAACTTGAAGAAATACATACCA 59.877 40.000 0.00 0.00 0.00 3.25
5461 6728 2.113243 GAACTCAGGGACCGGCAACT 62.113 60.000 0.00 0.00 0.00 3.16
5502 6769 1.818959 TTCCTTGCCTGGCACAATGC 61.819 55.000 23.30 0.00 44.08 3.56
5503 6770 0.037975 GTTCCTTGCCTGGCACAATG 60.038 55.000 23.30 11.63 38.71 2.82
5535 7185 5.520751 TCTTAGTTTCCCCCTGTTTTTCAA 58.479 37.500 0.00 0.00 0.00 2.69
5549 7200 9.937175 GCATTATCCTTGTAACATCTTAGTTTC 57.063 33.333 0.00 0.00 33.07 2.78
5552 7203 8.486210 TGAGCATTATCCTTGTAACATCTTAGT 58.514 33.333 0.00 0.00 0.00 2.24
5567 7218 4.122776 CACACTACCACTGAGCATTATCC 58.877 47.826 0.00 0.00 0.00 2.59
5569 7220 4.507710 CACACACTACCACTGAGCATTAT 58.492 43.478 0.00 0.00 0.00 1.28
5581 7232 4.024670 AGATTACTCCTCCACACACTACC 58.975 47.826 0.00 0.00 0.00 3.18
5582 7233 5.652518 GAAGATTACTCCTCCACACACTAC 58.347 45.833 0.00 0.00 0.00 2.73
5583 7234 4.398358 CGAAGATTACTCCTCCACACACTA 59.602 45.833 0.00 0.00 0.00 2.74
5584 7235 3.193691 CGAAGATTACTCCTCCACACACT 59.806 47.826 0.00 0.00 0.00 3.55
5585 7236 3.512680 CGAAGATTACTCCTCCACACAC 58.487 50.000 0.00 0.00 0.00 3.82
5586 7237 2.496070 CCGAAGATTACTCCTCCACACA 59.504 50.000 0.00 0.00 0.00 3.72
5587 7238 2.758979 TCCGAAGATTACTCCTCCACAC 59.241 50.000 0.00 0.00 0.00 3.82
5588 7239 2.758979 GTCCGAAGATTACTCCTCCACA 59.241 50.000 0.00 0.00 0.00 4.17
5589 7240 2.223525 CGTCCGAAGATTACTCCTCCAC 60.224 54.545 0.00 0.00 0.00 4.02
5590 7241 2.022195 CGTCCGAAGATTACTCCTCCA 58.978 52.381 0.00 0.00 0.00 3.86
5591 7242 1.337387 CCGTCCGAAGATTACTCCTCC 59.663 57.143 0.00 0.00 0.00 4.30
5597 7248 0.179092 CCACCCCGTCCGAAGATTAC 60.179 60.000 0.00 0.00 0.00 1.89
5606 7257 0.754587 CCTCTACTACCACCCCGTCC 60.755 65.000 0.00 0.00 0.00 4.79
5610 7261 4.196118 AGTAATCCTCTACTACCACCCC 57.804 50.000 0.00 0.00 30.13 4.95
5618 7269 7.013464 CACTCGGAAACATAGTAATCCTCTACT 59.987 40.741 0.00 0.00 36.16 2.57
5619 7270 7.140048 CACTCGGAAACATAGTAATCCTCTAC 58.860 42.308 0.00 0.00 0.00 2.59
5620 7271 6.264744 CCACTCGGAAACATAGTAATCCTCTA 59.735 42.308 0.00 0.00 0.00 2.43
5621 7272 5.069251 CCACTCGGAAACATAGTAATCCTCT 59.931 44.000 0.00 0.00 0.00 3.69
5622 7273 5.290386 CCACTCGGAAACATAGTAATCCTC 58.710 45.833 0.00 0.00 0.00 3.71
5625 7276 5.019785 ACCCACTCGGAAACATAGTAATC 57.980 43.478 0.00 0.00 34.64 1.75
5626 7277 5.183228 CAACCCACTCGGAAACATAGTAAT 58.817 41.667 0.00 0.00 34.64 1.89
5627 7278 4.571919 CAACCCACTCGGAAACATAGTAA 58.428 43.478 0.00 0.00 34.64 2.24
5628 7279 3.618019 GCAACCCACTCGGAAACATAGTA 60.618 47.826 0.00 0.00 34.64 1.82
5629 7280 2.874457 GCAACCCACTCGGAAACATAGT 60.874 50.000 0.00 0.00 34.64 2.12
5631 7282 1.349688 AGCAACCCACTCGGAAACATA 59.650 47.619 0.00 0.00 34.64 2.29
5632 7283 0.110486 AGCAACCCACTCGGAAACAT 59.890 50.000 0.00 0.00 34.64 2.71
5633 7284 0.817634 CAGCAACCCACTCGGAAACA 60.818 55.000 0.00 0.00 34.64 2.83
5634 7285 1.949257 CAGCAACCCACTCGGAAAC 59.051 57.895 0.00 0.00 34.64 2.78
5636 7287 2.281484 GCAGCAACCCACTCGGAA 60.281 61.111 0.00 0.00 34.64 4.30
5637 7288 2.818169 AAGCAGCAACCCACTCGGA 61.818 57.895 0.00 0.00 34.64 4.55
5639 7290 1.572085 CTCAAGCAGCAACCCACTCG 61.572 60.000 0.00 0.00 0.00 4.18
5641 7292 1.228367 CCTCAAGCAGCAACCCACT 60.228 57.895 0.00 0.00 0.00 4.00
5642 7293 0.823356 TTCCTCAAGCAGCAACCCAC 60.823 55.000 0.00 0.00 0.00 4.61
5657 7339 6.058183 GGTATCATCAGTAGCAACAATTCCT 58.942 40.000 0.00 0.00 0.00 3.36
5658 7340 5.050091 CGGTATCATCAGTAGCAACAATTCC 60.050 44.000 0.00 0.00 0.00 3.01
5704 7386 0.739561 ACGGAGACTATCGTTCCTGC 59.260 55.000 0.00 0.00 36.04 4.85
5706 7388 2.015587 GACACGGAGACTATCGTTCCT 58.984 52.381 1.17 0.00 37.53 3.36
5723 7405 1.269883 ACTGTAATTCACGTGCCGACA 60.270 47.619 11.67 10.95 0.00 4.35
5766 7449 6.511282 CGCGAAGACATATCAGAACTAGTGTA 60.511 42.308 0.00 0.00 0.00 2.90
5767 7450 5.583495 GCGAAGACATATCAGAACTAGTGT 58.417 41.667 0.00 0.00 0.00 3.55
5780 7466 1.542472 TGAGTGGTTCGCGAAGACATA 59.458 47.619 24.13 11.58 0.00 2.29
5791 7477 6.985188 TTATTGCTGATTAGTGAGTGGTTC 57.015 37.500 0.00 0.00 0.00 3.62
5835 7521 1.747444 AACAGGGGGTTGATCTCACT 58.253 50.000 0.00 0.00 38.60 3.41
5856 7542 5.106555 ACATGATCCGAATGTGAACAAAGTC 60.107 40.000 0.00 0.00 36.89 3.01
5885 7572 5.179045 TCGTAAGGCGGTTCTATAGAAAG 57.821 43.478 16.73 14.22 41.72 2.62
5906 7593 2.633681 GAATGCAGGCGGGGCAAATC 62.634 60.000 5.69 4.52 45.60 2.17
5916 7603 4.511454 TGAACGAATACATAGAATGCAGGC 59.489 41.667 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.