Multiple sequence alignment - TraesCS5B01G166300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G166300 chr5B 100.000 4489 0 0 1 4489 308548990 308553478 0.000000e+00 8290
1 TraesCS5B01G166300 chr5A 90.589 2816 133 58 391 3133 362168053 362170809 0.000000e+00 3611
2 TraesCS5B01G166300 chr5A 88.214 823 41 26 3135 3925 362170894 362171692 0.000000e+00 931
3 TraesCS5B01G166300 chr5A 87.755 392 27 8 1 391 362167775 362168146 5.330000e-119 438
4 TraesCS5B01G166300 chr5A 92.063 189 12 2 3907 4093 362172648 362172835 3.440000e-66 263
5 TraesCS5B01G166300 chr5A 92.818 181 10 3 4105 4284 44602566 44602744 4.450000e-65 259
6 TraesCS5B01G166300 chr5A 93.277 119 7 1 4372 4489 362172889 362173007 1.660000e-39 174
7 TraesCS5B01G166300 chr5A 84.762 105 16 0 2550 2654 362173050 362173154 6.140000e-19 106
8 TraesCS5B01G166300 chr5D 90.753 1568 72 24 392 1916 272354073 272355610 0.000000e+00 2025
9 TraesCS5B01G166300 chr5D 91.068 1377 78 25 1909 3262 272356443 272357797 0.000000e+00 1820
10 TraesCS5B01G166300 chr5D 95.511 802 27 5 3315 4114 272357795 272358589 0.000000e+00 1273
11 TraesCS5B01G166300 chr5D 91.563 403 30 3 1 399 272353771 272354173 1.820000e-153 553
12 TraesCS5B01G166300 chr5D 93.578 218 10 3 4276 4489 272358588 272358805 5.600000e-84 322
13 TraesCS5B01G166300 chr7D 97.006 167 5 0 4113 4279 562184949 562185115 9.510000e-72 281
14 TraesCS5B01G166300 chr7B 93.989 183 8 3 4113 4293 64695622 64695441 1.590000e-69 274
15 TraesCS5B01G166300 chr1B 95.833 168 6 1 4111 4278 268402698 268402864 2.060000e-68 270
16 TraesCS5B01G166300 chr2D 94.286 175 10 0 4105 4279 32474296 32474470 7.400000e-68 268
17 TraesCS5B01G166300 chr2D 94.253 174 8 2 4104 4277 130727681 130727510 9.570000e-67 265
18 TraesCS5B01G166300 chr4A 92.513 187 12 2 4109 4294 346686999 346686814 2.660000e-67 267
19 TraesCS5B01G166300 chr2B 94.767 172 8 1 4110 4280 790644938 790645109 2.660000e-67 267
20 TraesCS5B01G166300 chr6D 93.296 179 11 1 4106 4283 392278570 392278748 3.440000e-66 263


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G166300 chr5B 308548990 308553478 4488 False 8290.0 8290 100.000000 1 4489 1 chr5B.!!$F1 4488
1 TraesCS5B01G166300 chr5A 362167775 362173154 5379 False 920.5 3611 89.443333 1 4489 6 chr5A.!!$F2 4488
2 TraesCS5B01G166300 chr5D 272353771 272358805 5034 False 1198.6 2025 92.494600 1 4489 5 chr5D.!!$F1 4488

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
984 1002 0.107993 CTCTCGCAATCTTCCCAGCA 60.108 55.0 0.0 0.0 0.0 4.41 F
985 1003 0.107993 TCTCGCAATCTTCCCAGCAG 60.108 55.0 0.0 0.0 0.0 4.24 F
1459 1480 0.179108 GTGGAGGTGTCGCAGGTATC 60.179 60.0 0.0 0.0 0.0 2.24 F
2780 3691 0.659957 GGATGTTGATGGAGAAGCGC 59.340 55.0 0.0 0.0 0.0 5.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2591 3496 0.872021 CTATTCTGAGCACGCGGTCC 60.872 60.0 12.47 0.0 38.96 4.46 R
2899 3810 1.922570 ATCGTTGTAGCGTGATGGTC 58.077 50.0 0.00 0.0 0.00 4.02 R
3061 3994 0.035056 AGGCTGTCAATAGTGCCCAC 60.035 55.0 0.00 0.0 45.94 4.61 R
3715 4760 0.616111 CTAGTGCTCCCACCTCTGGT 60.616 60.0 0.00 0.0 43.09 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 118 0.393820 ATTGGTGCAAAAGTGGCCTG 59.606 50.000 3.32 0.00 0.00 4.85
187 191 7.162761 TCCGTCCATAAATAGAACTTTTGTGA 58.837 34.615 0.00 0.00 29.64 3.58
224 228 8.286800 TGTAGACATATTTAGTGTGTTTGTTGC 58.713 33.333 0.00 0.00 31.71 4.17
244 248 3.266772 TGCCTCATTTCAGTCCATACCTT 59.733 43.478 0.00 0.00 0.00 3.50
290 294 1.696063 TTATACTCCCTTCGTCCGGG 58.304 55.000 0.00 0.00 43.38 5.73
295 299 3.303462 TCCCTTCGTCCGGGATTAA 57.697 52.632 0.00 0.00 45.67 1.40
309 313 4.377022 CCGGGATTAATTATCGCTCAAACG 60.377 45.833 0.00 0.00 42.43 3.60
310 314 4.377022 CGGGATTAATTATCGCTCAAACGG 60.377 45.833 0.00 0.00 42.43 4.44
311 315 4.753107 GGGATTAATTATCGCTCAAACGGA 59.247 41.667 0.00 0.00 41.63 4.69
312 316 5.411669 GGGATTAATTATCGCTCAAACGGAT 59.588 40.000 0.00 0.00 41.63 4.18
313 317 6.592607 GGGATTAATTATCGCTCAAACGGATA 59.407 38.462 0.00 0.00 41.63 2.59
314 318 7.118680 GGGATTAATTATCGCTCAAACGGATAA 59.881 37.037 0.00 0.00 41.63 1.75
315 319 8.500773 GGATTAATTATCGCTCAAACGGATAAA 58.499 33.333 0.00 0.00 33.82 1.40
318 322 7.730364 AATTATCGCTCAAACGGATAAATCT 57.270 32.000 0.00 0.00 0.00 2.40
319 323 8.827177 AATTATCGCTCAAACGGATAAATCTA 57.173 30.769 0.00 0.00 0.00 1.98
320 324 7.869016 TTATCGCTCAAACGGATAAATCTAG 57.131 36.000 0.00 0.00 0.00 2.43
321 325 4.049186 TCGCTCAAACGGATAAATCTAGC 58.951 43.478 0.00 0.00 0.00 3.42
322 326 4.051922 CGCTCAAACGGATAAATCTAGCT 58.948 43.478 0.00 0.00 0.00 3.32
323 327 4.149046 CGCTCAAACGGATAAATCTAGCTC 59.851 45.833 0.00 0.00 0.00 4.09
324 328 5.293560 GCTCAAACGGATAAATCTAGCTCT 58.706 41.667 0.00 0.00 0.00 4.09
325 329 6.448006 GCTCAAACGGATAAATCTAGCTCTA 58.552 40.000 0.00 0.00 0.00 2.43
326 330 6.924060 GCTCAAACGGATAAATCTAGCTCTAA 59.076 38.462 0.00 0.00 0.00 2.10
327 331 7.438459 GCTCAAACGGATAAATCTAGCTCTAAA 59.562 37.037 0.00 0.00 0.00 1.85
328 332 9.314321 CTCAAACGGATAAATCTAGCTCTAAAA 57.686 33.333 0.00 0.00 0.00 1.52
329 333 9.661563 TCAAACGGATAAATCTAGCTCTAAAAA 57.338 29.630 0.00 0.00 0.00 1.94
333 337 9.425577 ACGGATAAATCTAGCTCTAAAAATAGC 57.574 33.333 0.00 0.00 39.08 2.97
334 338 8.587950 CGGATAAATCTAGCTCTAAAAATAGCG 58.412 37.037 0.00 0.00 43.63 4.26
335 339 8.384365 GGATAAATCTAGCTCTAAAAATAGCGC 58.616 37.037 0.00 0.00 43.63 5.92
336 340 9.145865 GATAAATCTAGCTCTAAAAATAGCGCT 57.854 33.333 17.26 17.26 43.63 5.92
345 349 9.959749 AGCTCTAAAAATAGCGCTAGATATATC 57.040 33.333 23.37 4.42 43.63 1.63
346 350 9.187455 GCTCTAAAAATAGCGCTAGATATATCC 57.813 37.037 23.37 3.47 0.00 2.59
347 351 9.388346 CTCTAAAAATAGCGCTAGATATATCCG 57.612 37.037 23.37 7.23 0.00 4.18
348 352 8.900781 TCTAAAAATAGCGCTAGATATATCCGT 58.099 33.333 23.37 0.00 0.00 4.69
349 353 9.517609 CTAAAAATAGCGCTAGATATATCCGTT 57.482 33.333 23.37 5.03 0.00 4.44
350 354 8.773404 AAAAATAGCGCTAGATATATCCGTTT 57.227 30.769 23.37 10.94 0.00 3.60
351 355 7.757097 AAATAGCGCTAGATATATCCGTTTG 57.243 36.000 23.37 0.00 0.00 2.93
352 356 6.694877 ATAGCGCTAGATATATCCGTTTGA 57.305 37.500 23.37 0.00 0.00 2.69
353 357 4.987832 AGCGCTAGATATATCCGTTTGAG 58.012 43.478 8.99 0.00 0.00 3.02
354 358 3.548268 GCGCTAGATATATCCGTTTGAGC 59.452 47.826 9.18 7.84 0.00 4.26
355 359 3.786576 CGCTAGATATATCCGTTTGAGCG 59.213 47.826 17.50 17.50 43.41 5.03
356 360 4.982999 GCTAGATATATCCGTTTGAGCGA 58.017 43.478 9.18 0.00 0.00 4.93
357 361 5.583495 GCTAGATATATCCGTTTGAGCGAT 58.417 41.667 9.18 0.00 0.00 4.58
358 362 6.037098 GCTAGATATATCCGTTTGAGCGATT 58.963 40.000 9.18 0.00 0.00 3.34
359 363 7.194278 GCTAGATATATCCGTTTGAGCGATTA 58.806 38.462 9.18 0.00 0.00 1.75
360 364 7.166142 GCTAGATATATCCGTTTGAGCGATTAC 59.834 40.741 9.18 0.00 0.00 1.89
361 365 6.331061 AGATATATCCGTTTGAGCGATTACC 58.669 40.000 9.18 0.00 0.00 2.85
362 366 2.684001 ATCCGTTTGAGCGATTACCA 57.316 45.000 0.00 0.00 0.00 3.25
363 367 2.459060 TCCGTTTGAGCGATTACCAA 57.541 45.000 0.00 0.00 0.00 3.67
364 368 2.768698 TCCGTTTGAGCGATTACCAAA 58.231 42.857 0.00 0.00 0.00 3.28
365 369 3.340034 TCCGTTTGAGCGATTACCAAAT 58.660 40.909 0.00 0.00 33.17 2.32
366 370 4.505808 TCCGTTTGAGCGATTACCAAATA 58.494 39.130 0.00 0.00 33.17 1.40
367 371 4.569162 TCCGTTTGAGCGATTACCAAATAG 59.431 41.667 0.00 0.00 33.17 1.73
368 372 4.331717 CCGTTTGAGCGATTACCAAATAGT 59.668 41.667 0.00 0.00 33.17 2.12
369 373 5.255596 CGTTTGAGCGATTACCAAATAGTG 58.744 41.667 0.00 0.00 33.17 2.74
370 374 4.875544 TTGAGCGATTACCAAATAGTGC 57.124 40.909 0.00 0.00 0.00 4.40
371 375 4.137116 TGAGCGATTACCAAATAGTGCT 57.863 40.909 0.00 0.00 33.36 4.40
372 376 5.270893 TGAGCGATTACCAAATAGTGCTA 57.729 39.130 0.00 0.00 31.80 3.49
373 377 5.289595 TGAGCGATTACCAAATAGTGCTAG 58.710 41.667 0.00 0.00 31.80 3.42
374 378 5.068591 TGAGCGATTACCAAATAGTGCTAGA 59.931 40.000 0.00 0.00 31.80 2.43
375 379 6.102897 AGCGATTACCAAATAGTGCTAGAT 57.897 37.500 0.00 0.00 30.60 1.98
376 380 5.928839 AGCGATTACCAAATAGTGCTAGATG 59.071 40.000 0.00 0.00 30.60 2.90
377 381 5.389935 GCGATTACCAAATAGTGCTAGATGC 60.390 44.000 0.00 0.00 43.25 3.91
389 393 1.797635 GCTAGATGCATCCTTTCGAGC 59.202 52.381 23.06 16.72 42.31 5.03
390 394 2.057316 CTAGATGCATCCTTTCGAGCG 58.943 52.381 23.06 0.00 0.00 5.03
391 395 0.176680 AGATGCATCCTTTCGAGCGT 59.823 50.000 23.06 0.00 0.00 5.07
392 396 0.579156 GATGCATCCTTTCGAGCGTC 59.421 55.000 16.23 0.00 36.07 5.19
393 397 1.148157 ATGCATCCTTTCGAGCGTCG 61.148 55.000 0.00 1.67 42.10 5.12
394 398 2.998667 CATCCTTTCGAGCGTCGC 59.001 61.111 9.80 9.80 40.21 5.19
395 399 2.202756 ATCCTTTCGAGCGTCGCC 60.203 61.111 14.86 4.55 40.21 5.54
396 400 2.711922 ATCCTTTCGAGCGTCGCCT 61.712 57.895 14.86 0.63 40.21 5.52
397 401 1.381928 ATCCTTTCGAGCGTCGCCTA 61.382 55.000 14.86 0.00 40.21 3.93
398 402 1.153901 CCTTTCGAGCGTCGCCTAA 60.154 57.895 14.86 2.83 40.21 2.69
399 403 0.734942 CCTTTCGAGCGTCGCCTAAA 60.735 55.000 14.86 10.87 40.21 1.85
400 404 0.640768 CTTTCGAGCGTCGCCTAAAG 59.359 55.000 14.86 16.22 40.21 1.85
427 432 9.765795 GGATGTATCTAGCACTAAAAATAGTGT 57.234 33.333 15.23 6.95 46.74 3.55
447 452 7.598759 AGTGTTAGATATATCCGGTTTGAGT 57.401 36.000 9.18 0.00 0.00 3.41
548 553 5.773176 GGGAGTGGTATTTTCTTTCCAGAAA 59.227 40.000 0.00 0.00 45.63 2.52
556 561 7.063780 GGTATTTTCTTTCCAGAAATGTGCATG 59.936 37.037 0.00 0.00 46.36 4.06
565 574 4.201851 CCAGAAATGTGCATGTACAGTAGC 60.202 45.833 21.32 14.18 33.44 3.58
703 718 3.777087 TGAATGCCTTTCCAGATTTCCA 58.223 40.909 0.00 0.00 33.04 3.53
704 719 3.765511 TGAATGCCTTTCCAGATTTCCAG 59.234 43.478 0.00 0.00 33.04 3.86
705 720 3.744940 ATGCCTTTCCAGATTTCCAGA 57.255 42.857 0.00 0.00 0.00 3.86
706 721 3.744940 TGCCTTTCCAGATTTCCAGAT 57.255 42.857 0.00 0.00 0.00 2.90
707 722 4.051661 TGCCTTTCCAGATTTCCAGATT 57.948 40.909 0.00 0.00 0.00 2.40
708 723 4.419282 TGCCTTTCCAGATTTCCAGATTT 58.581 39.130 0.00 0.00 0.00 2.17
709 724 4.463891 TGCCTTTCCAGATTTCCAGATTTC 59.536 41.667 0.00 0.00 0.00 2.17
710 725 4.142071 GCCTTTCCAGATTTCCAGATTTCC 60.142 45.833 0.00 0.00 0.00 3.13
715 730 3.294214 CAGATTTCCAGATTTCCCCCTG 58.706 50.000 0.00 0.00 0.00 4.45
733 748 1.203523 CTGCGTGCTTTAGTCCTCTCT 59.796 52.381 0.00 0.00 0.00 3.10
913 928 4.346127 TCCAATGGATGATGTCTACCTCAG 59.654 45.833 0.00 0.00 0.00 3.35
919 934 2.103373 TGATGTCTACCTCAGCTCACC 58.897 52.381 0.00 0.00 0.00 4.02
929 944 1.153489 CAGCTCACCAGATCACGGG 60.153 63.158 6.19 1.79 37.39 5.28
930 945 2.187946 GCTCACCAGATCACGGGG 59.812 66.667 6.19 1.82 35.72 5.73
968 983 1.133450 TCGGTCAGCCTATTAGCCTCT 60.133 52.381 0.00 0.00 0.00 3.69
970 985 1.271102 GGTCAGCCTATTAGCCTCTCG 59.729 57.143 0.00 0.00 0.00 4.04
972 987 0.676184 CAGCCTATTAGCCTCTCGCA 59.324 55.000 0.00 0.00 41.38 5.10
982 1000 0.813210 GCCTCTCGCAATCTTCCCAG 60.813 60.000 0.00 0.00 37.47 4.45
984 1002 0.107993 CTCTCGCAATCTTCCCAGCA 60.108 55.000 0.00 0.00 0.00 4.41
985 1003 0.107993 TCTCGCAATCTTCCCAGCAG 60.108 55.000 0.00 0.00 0.00 4.24
1051 1069 1.522580 GTCGCAGCCTTCTCATCCC 60.523 63.158 0.00 0.00 0.00 3.85
1146 1164 3.554692 GCCAAGGTGCGTCGATCG 61.555 66.667 9.36 9.36 43.12 3.69
1147 1165 2.180769 CCAAGGTGCGTCGATCGA 59.819 61.111 15.15 15.15 42.86 3.59
1148 1166 1.874019 CCAAGGTGCGTCGATCGAG 60.874 63.158 20.09 13.60 42.86 4.04
1149 1167 2.202623 AAGGTGCGTCGATCGAGC 60.203 61.111 20.09 22.46 42.86 5.03
1151 1169 2.600122 AAGGTGCGTCGATCGAGCTC 62.600 60.000 27.65 24.87 42.86 4.09
1153 1171 1.936880 GTGCGTCGATCGAGCTCTG 60.937 63.158 27.65 15.14 42.86 3.35
1154 1172 2.399356 TGCGTCGATCGAGCTCTGT 61.399 57.895 27.65 0.00 42.86 3.41
1164 1182 3.685139 TCGAGCTCTGTTTCCTGATTT 57.315 42.857 12.85 0.00 0.00 2.17
1169 1187 5.106396 CGAGCTCTGTTTCCTGATTTCAAAT 60.106 40.000 12.85 0.00 0.00 2.32
1201 1221 4.880696 GTGCATGCTCTTCCTCTTAGAAAT 59.119 41.667 20.33 0.00 0.00 2.17
1202 1222 5.356470 GTGCATGCTCTTCCTCTTAGAAATT 59.644 40.000 20.33 0.00 0.00 1.82
1203 1223 5.948162 TGCATGCTCTTCCTCTTAGAAATTT 59.052 36.000 20.33 0.00 0.00 1.82
1205 1225 6.127786 GCATGCTCTTCCTCTTAGAAATTTGT 60.128 38.462 11.37 0.00 0.00 2.83
1206 1226 7.576477 GCATGCTCTTCCTCTTAGAAATTTGTT 60.576 37.037 11.37 0.00 0.00 2.83
1207 1227 7.823745 TGCTCTTCCTCTTAGAAATTTGTTT 57.176 32.000 0.00 0.00 0.00 2.83
1208 1228 8.237811 TGCTCTTCCTCTTAGAAATTTGTTTT 57.762 30.769 0.00 0.00 0.00 2.43
1268 1289 2.625737 CTGGAGCACGATGAGATGTTT 58.374 47.619 0.00 0.00 0.00 2.83
1274 1295 4.820897 AGCACGATGAGATGTTTAACTCA 58.179 39.130 0.00 0.00 45.19 3.41
1458 1479 1.614241 GGTGGAGGTGTCGCAGGTAT 61.614 60.000 0.00 0.00 0.00 2.73
1459 1480 0.179108 GTGGAGGTGTCGCAGGTATC 60.179 60.000 0.00 0.00 0.00 2.24
1460 1481 1.327690 TGGAGGTGTCGCAGGTATCC 61.328 60.000 0.00 0.00 0.00 2.59
1515 1548 1.162698 GCTGCATCTCAAGACTGCAA 58.837 50.000 13.98 4.15 44.59 4.08
1545 1578 1.068333 GTTGTTCATGGCGTTGCTGAT 60.068 47.619 0.00 0.00 0.00 2.90
1558 1591 1.550327 TGCTGATTCCTCTGAGACGT 58.450 50.000 6.17 0.00 0.00 4.34
1559 1592 1.203287 TGCTGATTCCTCTGAGACGTG 59.797 52.381 6.17 0.00 0.00 4.49
1560 1593 1.919918 CTGATTCCTCTGAGACGTGC 58.080 55.000 6.17 0.00 0.00 5.34
1561 1594 1.203287 CTGATTCCTCTGAGACGTGCA 59.797 52.381 6.17 0.00 0.00 4.57
1590 1623 0.679321 GCAGAGGAAGGCCAAGAAGG 60.679 60.000 5.01 0.00 41.84 3.46
1775 1808 6.567891 CGGTGGGTTTTTCTTTACTCTGAATC 60.568 42.308 0.00 0.00 0.00 2.52
1797 1830 9.302345 GAATCTATTACTTTGTCTTCGTCATGA 57.698 33.333 0.00 0.00 0.00 3.07
2099 2997 3.243535 TGGAGACATGCATCTATCGTGTC 60.244 47.826 0.00 0.49 45.84 3.67
2192 3095 1.072159 GCAGTGCCCTCTTCTGTGT 59.928 57.895 2.85 0.00 0.00 3.72
2367 3270 7.507616 AGGTATGTTTTGGATGTTTTAGGTCAA 59.492 33.333 0.00 0.00 0.00 3.18
2409 3312 6.019479 CGGAGTATATCTTTGAACAGCTCAAC 60.019 42.308 0.00 0.00 43.90 3.18
2413 3316 9.289782 AGTATATCTTTGAACAGCTCAACTTTT 57.710 29.630 0.00 0.00 43.90 2.27
2458 3362 7.432350 TGTTCCATTCCATTTTGCAATTAAC 57.568 32.000 0.00 0.00 0.00 2.01
2591 3496 4.151335 CAGGTTCACGATGAGAAAGAACTG 59.849 45.833 0.00 0.00 38.78 3.16
2603 3508 3.112709 GAACTGGACCGCGTGCTC 61.113 66.667 4.92 0.00 0.00 4.26
2662 3567 4.704057 CCGTAGTCTAGGTACCAGTTTTCT 59.296 45.833 15.94 7.07 0.00 2.52
2666 3571 6.347859 AGTCTAGGTACCAGTTTTCTTCAG 57.652 41.667 15.94 0.00 0.00 3.02
2676 3581 4.884164 CCAGTTTTCTTCAGTTTCTGAGGT 59.116 41.667 8.32 0.00 41.75 3.85
2677 3582 5.220931 CCAGTTTTCTTCAGTTTCTGAGGTG 60.221 44.000 8.32 0.99 41.75 4.00
2682 3587 6.624352 TTCTTCAGTTTCTGAGGTGAAATG 57.376 37.500 8.32 0.00 41.75 2.32
2684 3589 6.122277 TCTTCAGTTTCTGAGGTGAAATGTT 58.878 36.000 8.32 0.00 41.75 2.71
2780 3691 0.659957 GGATGTTGATGGAGAAGCGC 59.340 55.000 0.00 0.00 0.00 5.92
2863 3774 7.889589 CTTTATTTGAACAAATGAAGGGACC 57.110 36.000 24.21 0.00 44.16 4.46
2864 3775 4.890158 ATTTGAACAAATGAAGGGACCC 57.110 40.909 0.59 0.59 39.36 4.46
2887 3798 4.515567 CCCCTTGTACTTCAACTGAACTTC 59.484 45.833 0.00 0.00 32.18 3.01
2899 3810 8.835467 TTCAACTGAACTTCATTAAAGAAACG 57.165 30.769 0.00 0.00 38.44 3.60
2901 3812 8.120465 TCAACTGAACTTCATTAAAGAAACGAC 58.880 33.333 0.00 0.00 38.44 4.34
2927 3840 2.534349 ACGCTACAACGATTTAGCATCG 59.466 45.455 10.85 3.58 46.02 3.84
2946 3859 1.981533 CGTTCGTCCTTTCGACTAACC 59.018 52.381 0.00 0.00 41.75 2.85
2956 3869 5.048507 CCTTTCGACTAACCATAGCCTTAC 58.951 45.833 0.00 0.00 31.96 2.34
2960 3873 6.229936 TCGACTAACCATAGCCTTACAAAT 57.770 37.500 0.00 0.00 31.96 2.32
2961 3874 7.350744 TCGACTAACCATAGCCTTACAAATA 57.649 36.000 0.00 0.00 31.96 1.40
2962 3875 7.959175 TCGACTAACCATAGCCTTACAAATAT 58.041 34.615 0.00 0.00 31.96 1.28
2963 3876 9.081204 TCGACTAACCATAGCCTTACAAATATA 57.919 33.333 0.00 0.00 31.96 0.86
3061 3994 5.398416 CGCATTGATTCTTTGATGCACATAG 59.602 40.000 7.78 0.00 43.76 2.23
3099 4032 6.540189 ACAGCCTACAGAATTTATAGTTGCTG 59.460 38.462 0.00 0.00 40.93 4.41
3133 4149 8.841444 AGCAACATATAAAACGCTAAAAGATG 57.159 30.769 0.00 0.00 0.00 2.90
3137 4153 9.783256 AACATATAAAACGCTAAAAGATGGTTC 57.217 29.630 0.00 0.00 0.00 3.62
3144 4160 4.171005 CGCTAAAAGATGGTTCGTACTGA 58.829 43.478 0.00 0.00 0.00 3.41
3252 4268 7.284489 TGGAGTTTCTGCTGTAAGTTTTTGTAT 59.716 33.333 0.00 0.00 35.30 2.29
3282 4299 3.616821 TCATTTCGAGTTATGCTTCACCG 59.383 43.478 0.00 0.00 0.00 4.94
3285 4302 0.370273 CGAGTTATGCTTCACCGCAC 59.630 55.000 0.00 0.00 43.61 5.34
3286 4303 1.438651 GAGTTATGCTTCACCGCACA 58.561 50.000 0.00 0.00 43.61 4.57
3298 4333 4.307443 TCACCGCACATAGTAATCTCTG 57.693 45.455 0.00 0.00 0.00 3.35
3299 4334 3.699538 TCACCGCACATAGTAATCTCTGT 59.300 43.478 0.00 0.00 32.45 3.41
3349 4387 8.948631 TTGAGAGCCAGTACAAATAATCTTAG 57.051 34.615 0.00 0.00 0.00 2.18
3358 4396 4.740902 ACAAATAATCTTAGATGGGCCCC 58.259 43.478 22.27 4.15 0.00 5.80
3370 4408 1.900254 TGGGCCCCAAGTGATATGTA 58.100 50.000 22.27 0.00 0.00 2.29
3376 4414 5.243060 GGGCCCCAAGTGATATGTATTTTAC 59.757 44.000 12.23 0.00 0.00 2.01
3389 4427 1.821216 ATTTTACTGAGGGCGGTGTG 58.179 50.000 0.00 0.00 34.79 3.82
3500 4538 6.071108 AGCTCTTGAGTTGACTTAATGCTCTA 60.071 38.462 9.05 0.00 31.18 2.43
3525 4563 1.205893 TGTGTGTGTTGGCTTTTTCCC 59.794 47.619 0.00 0.00 0.00 3.97
3535 4573 2.698274 TGGCTTTTTCCCTTCTTTGGAC 59.302 45.455 0.00 0.00 0.00 4.02
3789 4834 2.483014 TCAACCATGTACCCCGAAAG 57.517 50.000 0.00 0.00 0.00 2.62
3855 4900 2.125310 TGCCGTGCTACCAATCCG 60.125 61.111 0.00 0.00 0.00 4.18
3961 5984 8.522830 AGTTCAACTCAAAACAAGATCTTGAAA 58.477 29.630 36.15 17.35 42.93 2.69
4019 6042 5.661312 TGGGCTACTCAATGTATGTTCTACT 59.339 40.000 0.00 0.00 0.00 2.57
4022 6045 6.864165 GGCTACTCAATGTATGTTCTACTAGC 59.136 42.308 0.00 0.00 0.00 3.42
4059 6082 1.000843 AGTACATGCTTCACGTCTGCA 59.999 47.619 8.71 8.71 41.13 4.41
4081 6105 3.655276 AAAAGCTTGGAATGACTGCTG 57.345 42.857 0.00 0.00 33.96 4.41
4093 6117 5.751028 GGAATGACTGCTGTTACTGAGATAC 59.249 44.000 0.00 0.00 0.00 2.24
4094 6118 5.921962 ATGACTGCTGTTACTGAGATACA 57.078 39.130 0.00 0.00 0.00 2.29
4114 6138 3.568538 CAGCATGTTCCAAGCAAACTAC 58.431 45.455 0.00 0.00 29.93 2.73
4116 6140 3.503748 AGCATGTTCCAAGCAAACTACTC 59.496 43.478 0.00 0.00 29.93 2.59
4117 6141 3.366374 GCATGTTCCAAGCAAACTACTCC 60.366 47.826 0.00 0.00 0.00 3.85
4118 6142 2.858745 TGTTCCAAGCAAACTACTCCC 58.141 47.619 0.00 0.00 0.00 4.30
4119 6143 2.441750 TGTTCCAAGCAAACTACTCCCT 59.558 45.455 0.00 0.00 0.00 4.20
4120 6144 3.075148 GTTCCAAGCAAACTACTCCCTC 58.925 50.000 0.00 0.00 0.00 4.30
4121 6145 1.628846 TCCAAGCAAACTACTCCCTCC 59.371 52.381 0.00 0.00 0.00 4.30
4122 6146 1.676014 CCAAGCAAACTACTCCCTCCG 60.676 57.143 0.00 0.00 0.00 4.63
4123 6147 1.002087 CAAGCAAACTACTCCCTCCGT 59.998 52.381 0.00 0.00 0.00 4.69
4124 6148 1.349067 AGCAAACTACTCCCTCCGTT 58.651 50.000 0.00 0.00 0.00 4.44
4125 6149 1.275573 AGCAAACTACTCCCTCCGTTC 59.724 52.381 0.00 0.00 0.00 3.95
4126 6150 1.675116 GCAAACTACTCCCTCCGTTCC 60.675 57.143 0.00 0.00 0.00 3.62
4127 6151 1.900486 CAAACTACTCCCTCCGTTCCT 59.100 52.381 0.00 0.00 0.00 3.36
4128 6152 3.094572 CAAACTACTCCCTCCGTTCCTA 58.905 50.000 0.00 0.00 0.00 2.94
4129 6153 3.463048 AACTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
4130 6154 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
4131 6155 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
4132 6156 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
4133 6157 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
4134 6158 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
4135 6159 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
4136 6160 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
4137 6161 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
4138 6162 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
4139 6163 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
4140 6164 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
4141 6165 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
4142 6166 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
4143 6167 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
4144 6168 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
4145 6169 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
4146 6170 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
4159 6183 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
4160 6184 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
4161 6185 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
4162 6186 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
4163 6187 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
4164 6188 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
4165 6189 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
4166 6190 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
4167 6191 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
4169 6193 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
4170 6194 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
4171 6195 7.375834 AGATTTCAACAAGTGACTACATACGA 58.624 34.615 0.00 0.00 35.39 3.43
4172 6196 7.870954 AGATTTCAACAAGTGACTACATACGAA 59.129 33.333 0.00 0.00 35.39 3.85
4173 6197 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
4174 6198 4.921515 TCAACAAGTGACTACATACGAAGC 59.078 41.667 0.00 0.00 0.00 3.86
4175 6199 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
4176 6200 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
4177 6201 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
4178 6202 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
4179 6203 6.426937 ACAAGTGACTACATACGAAGCAAAAT 59.573 34.615 0.00 0.00 0.00 1.82
4180 6204 6.408858 AGTGACTACATACGAAGCAAAATG 57.591 37.500 0.00 0.00 0.00 2.32
4181 6205 6.163476 AGTGACTACATACGAAGCAAAATGA 58.837 36.000 0.00 0.00 0.00 2.57
4182 6206 6.311445 AGTGACTACATACGAAGCAAAATGAG 59.689 38.462 0.00 0.00 0.00 2.90
4183 6207 5.063438 TGACTACATACGAAGCAAAATGAGC 59.937 40.000 0.00 0.00 0.00 4.26
4184 6208 3.389687 ACATACGAAGCAAAATGAGCG 57.610 42.857 0.00 0.00 37.01 5.03
4185 6209 3.000041 ACATACGAAGCAAAATGAGCGA 59.000 40.909 0.00 0.00 37.01 4.93
4186 6210 3.435327 ACATACGAAGCAAAATGAGCGAA 59.565 39.130 0.00 0.00 37.01 4.70
4187 6211 4.094887 ACATACGAAGCAAAATGAGCGAAT 59.905 37.500 0.00 0.00 37.01 3.34
4188 6212 3.122937 ACGAAGCAAAATGAGCGAATC 57.877 42.857 0.00 0.00 37.01 2.52
4189 6213 2.744202 ACGAAGCAAAATGAGCGAATCT 59.256 40.909 0.00 0.00 37.01 2.40
4190 6214 3.932710 ACGAAGCAAAATGAGCGAATCTA 59.067 39.130 0.00 0.00 37.01 1.98
4191 6215 4.201724 ACGAAGCAAAATGAGCGAATCTAC 60.202 41.667 0.00 0.00 37.01 2.59
4192 6216 4.201714 CGAAGCAAAATGAGCGAATCTACA 60.202 41.667 0.00 0.00 37.01 2.74
4193 6217 4.606457 AGCAAAATGAGCGAATCTACAC 57.394 40.909 0.00 0.00 37.01 2.90
4194 6218 4.256920 AGCAAAATGAGCGAATCTACACT 58.743 39.130 0.00 0.00 37.01 3.55
4195 6219 4.697352 AGCAAAATGAGCGAATCTACACTT 59.303 37.500 0.00 0.00 37.01 3.16
4196 6220 5.182001 AGCAAAATGAGCGAATCTACACTTT 59.818 36.000 0.00 0.00 37.01 2.66
4197 6221 6.371548 AGCAAAATGAGCGAATCTACACTTTA 59.628 34.615 0.00 0.00 37.01 1.85
4198 6222 7.021196 GCAAAATGAGCGAATCTACACTTTAA 58.979 34.615 0.00 0.00 0.00 1.52
4199 6223 7.537306 GCAAAATGAGCGAATCTACACTTTAAA 59.463 33.333 0.00 0.00 0.00 1.52
4200 6224 9.393249 CAAAATGAGCGAATCTACACTTTAAAA 57.607 29.630 0.00 0.00 0.00 1.52
4205 6229 9.378551 TGAGCGAATCTACACTTTAAAATATGT 57.621 29.630 0.00 5.16 0.00 2.29
4206 6230 9.851043 GAGCGAATCTACACTTTAAAATATGTC 57.149 33.333 3.40 0.00 0.00 3.06
4207 6231 9.601217 AGCGAATCTACACTTTAAAATATGTCT 57.399 29.630 3.40 0.00 0.00 3.41
4268 6292 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
4269 6293 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
4270 6294 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
4271 6295 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
4272 6296 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
4273 6297 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
4274 6298 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
4275 6299 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
4276 6300 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
4332 6356 6.602410 TCCAATTGCATGGAGTTAATTTGA 57.398 33.333 4.87 0.00 44.52 2.69
4343 6367 9.480053 CATGGAGTTAATTTGATTTTGACTGTT 57.520 29.630 0.00 0.00 0.00 3.16
4370 6394 7.148407 GGTGTTACTCTGTGTTATGAAGAATGG 60.148 40.741 0.00 0.00 0.00 3.16
4390 6414 5.128033 TGGATTGCTCATGATCCCTTTTA 57.872 39.130 10.00 0.00 40.92 1.52
4394 6418 6.127366 GGATTGCTCATGATCCCTTTTACAAA 60.127 38.462 0.00 0.00 36.61 2.83
4399 6426 9.066892 TGCTCATGATCCCTTTTACAAATATAC 57.933 33.333 0.00 0.00 0.00 1.47
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 0.560688 AGTGGGCAAAAAGGGGAGAA 59.439 50.000 0.00 0.00 0.00 2.87
223 227 3.567478 AGGTATGGACTGAAATGAGGC 57.433 47.619 0.00 0.00 0.00 4.70
224 228 6.183361 TGGATAAGGTATGGACTGAAATGAGG 60.183 42.308 0.00 0.00 0.00 3.86
295 299 7.063544 GCTAGATTTATCCGTTTGAGCGATAAT 59.936 37.037 0.00 0.00 0.00 1.28
309 313 8.384365 GCGCTATTTTTAGAGCTAGATTTATCC 58.616 37.037 0.00 0.00 39.33 2.59
320 324 9.187455 GGATATATCTAGCGCTATTTTTAGAGC 57.813 37.037 19.19 7.37 42.09 4.09
321 325 9.388346 CGGATATATCTAGCGCTATTTTTAGAG 57.612 37.037 19.19 5.30 0.00 2.43
322 326 8.900781 ACGGATATATCTAGCGCTATTTTTAGA 58.099 33.333 19.19 12.90 0.00 2.10
323 327 9.517609 AACGGATATATCTAGCGCTATTTTTAG 57.482 33.333 19.19 6.97 0.00 1.85
324 328 9.865321 AAACGGATATATCTAGCGCTATTTTTA 57.135 29.630 19.19 8.50 0.00 1.52
325 329 8.656849 CAAACGGATATATCTAGCGCTATTTTT 58.343 33.333 19.19 6.46 0.00 1.94
326 330 8.033038 TCAAACGGATATATCTAGCGCTATTTT 58.967 33.333 19.19 8.29 0.00 1.82
327 331 7.544622 TCAAACGGATATATCTAGCGCTATTT 58.455 34.615 19.19 10.89 0.00 1.40
328 332 7.096884 TCAAACGGATATATCTAGCGCTATT 57.903 36.000 19.19 11.26 0.00 1.73
329 333 6.694877 TCAAACGGATATATCTAGCGCTAT 57.305 37.500 19.19 7.86 0.00 2.97
330 334 5.448768 GCTCAAACGGATATATCTAGCGCTA 60.449 44.000 17.75 17.75 0.00 4.26
331 335 4.675671 GCTCAAACGGATATATCTAGCGCT 60.676 45.833 17.26 17.26 0.00 5.92
332 336 3.548268 GCTCAAACGGATATATCTAGCGC 59.452 47.826 12.42 0.00 0.00 5.92
333 337 3.786576 CGCTCAAACGGATATATCTAGCG 59.213 47.826 12.42 16.38 43.34 4.26
334 338 4.982999 TCGCTCAAACGGATATATCTAGC 58.017 43.478 12.42 10.29 0.00 3.42
335 339 7.644551 GGTAATCGCTCAAACGGATATATCTAG 59.355 40.741 12.42 9.38 0.00 2.43
336 340 7.121611 TGGTAATCGCTCAAACGGATATATCTA 59.878 37.037 12.42 0.00 0.00 1.98
337 341 6.071560 TGGTAATCGCTCAAACGGATATATCT 60.072 38.462 12.42 0.00 0.00 1.98
338 342 6.097356 TGGTAATCGCTCAAACGGATATATC 58.903 40.000 3.96 3.96 0.00 1.63
339 343 6.032956 TGGTAATCGCTCAAACGGATATAT 57.967 37.500 0.00 0.00 0.00 0.86
340 344 5.456548 TGGTAATCGCTCAAACGGATATA 57.543 39.130 0.00 0.00 0.00 0.86
341 345 4.330944 TGGTAATCGCTCAAACGGATAT 57.669 40.909 0.00 0.00 0.00 1.63
342 346 3.804786 TGGTAATCGCTCAAACGGATA 57.195 42.857 0.00 0.00 0.00 2.59
343 347 2.684001 TGGTAATCGCTCAAACGGAT 57.316 45.000 0.00 0.00 0.00 4.18
344 348 2.459060 TTGGTAATCGCTCAAACGGA 57.541 45.000 0.00 0.00 0.00 4.69
345 349 3.757745 ATTTGGTAATCGCTCAAACGG 57.242 42.857 0.00 0.00 33.91 4.44
346 350 5.255596 CACTATTTGGTAATCGCTCAAACG 58.744 41.667 0.00 0.00 33.91 3.60
347 351 5.028375 GCACTATTTGGTAATCGCTCAAAC 58.972 41.667 0.00 0.00 33.91 2.93
348 352 4.941263 AGCACTATTTGGTAATCGCTCAAA 59.059 37.500 0.00 0.00 32.76 2.69
349 353 4.513442 AGCACTATTTGGTAATCGCTCAA 58.487 39.130 0.00 0.00 32.76 3.02
350 354 4.137116 AGCACTATTTGGTAATCGCTCA 57.863 40.909 0.00 0.00 32.76 4.26
351 355 5.529791 TCTAGCACTATTTGGTAATCGCTC 58.470 41.667 0.00 0.00 37.74 5.03
352 356 5.531122 TCTAGCACTATTTGGTAATCGCT 57.469 39.130 0.00 0.00 37.74 4.93
353 357 5.389935 GCATCTAGCACTATTTGGTAATCGC 60.390 44.000 0.00 0.00 44.79 4.58
354 358 6.158175 GCATCTAGCACTATTTGGTAATCG 57.842 41.667 0.00 0.00 44.79 3.34
369 373 1.797635 GCTCGAAAGGATGCATCTAGC 59.202 52.381 25.28 18.57 45.96 3.42
370 374 2.057316 CGCTCGAAAGGATGCATCTAG 58.943 52.381 25.28 13.80 0.00 2.43
371 375 1.409064 ACGCTCGAAAGGATGCATCTA 59.591 47.619 25.28 4.77 0.00 1.98
372 376 0.176680 ACGCTCGAAAGGATGCATCT 59.823 50.000 25.28 6.65 0.00 2.90
373 377 0.579156 GACGCTCGAAAGGATGCATC 59.421 55.000 18.81 18.81 0.00 3.91
374 378 1.148157 CGACGCTCGAAAGGATGCAT 61.148 55.000 0.00 0.00 43.74 3.96
375 379 1.805539 CGACGCTCGAAAGGATGCA 60.806 57.895 0.00 0.00 43.74 3.96
376 380 2.998667 CGACGCTCGAAAGGATGC 59.001 61.111 0.00 0.00 43.74 3.91
377 381 2.517450 GGCGACGCTCGAAAGGATG 61.517 63.158 20.77 0.00 43.74 3.51
378 382 1.381928 TAGGCGACGCTCGAAAGGAT 61.382 55.000 20.77 0.00 43.74 3.24
379 383 1.588824 TTAGGCGACGCTCGAAAGGA 61.589 55.000 20.77 0.00 43.74 3.36
380 384 0.734942 TTTAGGCGACGCTCGAAAGG 60.735 55.000 20.77 0.00 43.74 3.11
381 385 0.640768 CTTTAGGCGACGCTCGAAAG 59.359 55.000 20.77 20.44 43.74 2.62
382 386 0.734942 CCTTTAGGCGACGCTCGAAA 60.735 55.000 20.77 15.89 43.74 3.46
383 387 1.153901 CCTTTAGGCGACGCTCGAA 60.154 57.895 20.77 9.53 43.74 3.71
384 388 2.488355 CCTTTAGGCGACGCTCGA 59.512 61.111 20.77 3.38 43.74 4.04
385 389 2.351336 ATCCCTTTAGGCGACGCTCG 62.351 60.000 20.77 0.00 43.89 5.03
386 390 0.876342 CATCCCTTTAGGCGACGCTC 60.876 60.000 20.77 9.98 34.51 5.03
387 391 1.144057 CATCCCTTTAGGCGACGCT 59.856 57.895 20.77 8.37 34.51 5.07
388 392 0.103572 TACATCCCTTTAGGCGACGC 59.896 55.000 12.43 12.43 34.51 5.19
389 393 2.296471 AGATACATCCCTTTAGGCGACG 59.704 50.000 0.00 0.00 34.51 5.12
390 394 4.618693 GCTAGATACATCCCTTTAGGCGAC 60.619 50.000 0.00 0.00 34.51 5.19
391 395 3.510360 GCTAGATACATCCCTTTAGGCGA 59.490 47.826 0.00 0.00 34.51 5.54
392 396 3.258372 TGCTAGATACATCCCTTTAGGCG 59.742 47.826 0.00 0.00 34.51 5.52
393 397 4.284746 AGTGCTAGATACATCCCTTTAGGC 59.715 45.833 0.00 0.00 34.51 3.93
394 398 7.540474 TTAGTGCTAGATACATCCCTTTAGG 57.460 40.000 0.00 0.00 0.00 2.69
395 399 9.832445 TTTTTAGTGCTAGATACATCCCTTTAG 57.168 33.333 0.00 0.00 0.00 1.85
399 403 9.160412 ACTATTTTTAGTGCTAGATACATCCCT 57.840 33.333 0.00 0.00 0.00 4.20
400 404 9.209175 CACTATTTTTAGTGCTAGATACATCCC 57.791 37.037 0.00 0.00 40.64 3.85
427 432 7.834881 AGTCACTCAAACCGGATATATCTAA 57.165 36.000 9.46 0.00 0.00 2.10
439 444 8.828688 AACACTATTTAGTAGTCACTCAAACC 57.171 34.615 0.00 0.00 41.73 3.27
470 475 0.721718 GTTGTCGCTCGGAAAGGATG 59.278 55.000 0.00 0.00 0.00 3.51
471 476 0.608640 AGTTGTCGCTCGGAAAGGAT 59.391 50.000 0.00 0.00 0.00 3.24
472 477 1.250328 TAGTTGTCGCTCGGAAAGGA 58.750 50.000 0.00 0.00 0.00 3.36
473 478 2.074547 TTAGTTGTCGCTCGGAAAGG 57.925 50.000 0.00 0.00 0.00 3.11
475 480 3.921677 AGAATTAGTTGTCGCTCGGAAA 58.078 40.909 0.00 0.00 0.00 3.13
478 483 3.250744 TCAAGAATTAGTTGTCGCTCGG 58.749 45.455 1.09 0.00 0.00 4.63
514 519 0.490017 TACCACTCCCTCCCTTCACA 59.510 55.000 0.00 0.00 0.00 3.58
548 553 8.753133 ACTATATATGCTACTGTACATGCACAT 58.247 33.333 16.77 14.27 38.29 3.21
703 718 2.044946 GCACGCAGGGGGAAATCT 60.045 61.111 0.00 0.00 0.00 2.40
704 719 1.250840 AAAGCACGCAGGGGGAAATC 61.251 55.000 0.00 0.00 0.00 2.17
705 720 0.039035 TAAAGCACGCAGGGGGAAAT 59.961 50.000 0.00 0.00 0.00 2.17
706 721 0.608035 CTAAAGCACGCAGGGGGAAA 60.608 55.000 0.00 0.00 0.00 3.13
707 722 1.002624 CTAAAGCACGCAGGGGGAA 60.003 57.895 0.00 0.00 0.00 3.97
708 723 2.180159 GACTAAAGCACGCAGGGGGA 62.180 60.000 0.00 0.00 0.00 4.81
709 724 1.745489 GACTAAAGCACGCAGGGGG 60.745 63.158 0.00 0.00 0.00 5.40
710 725 1.745489 GGACTAAAGCACGCAGGGG 60.745 63.158 0.00 0.00 0.00 4.79
715 730 2.371910 AAGAGAGGACTAAAGCACGC 57.628 50.000 0.00 0.00 0.00 5.34
745 760 0.865769 GGCCGGATTATTACAGCACG 59.134 55.000 5.05 0.00 0.00 5.34
752 767 2.285083 GCATATGCGGCCGGATTATTA 58.715 47.619 37.33 20.10 0.00 0.98
753 768 1.094785 GCATATGCGGCCGGATTATT 58.905 50.000 37.33 19.40 0.00 1.40
754 769 2.780595 GCATATGCGGCCGGATTAT 58.219 52.632 37.33 23.28 0.00 1.28
874 889 6.043706 ATCCATTGGAGTGGCTATATATAGGC 59.956 42.308 30.15 30.15 44.16 3.93
875 890 7.290948 TCATCCATTGGAGTGGCTATATATAGG 59.709 40.741 19.19 3.95 39.19 2.57
876 891 8.255111 TCATCCATTGGAGTGGCTATATATAG 57.745 38.462 14.45 14.45 39.19 1.31
913 928 2.187946 CCCCGTGATCTGGTGAGC 59.812 66.667 0.00 0.00 0.00 4.26
943 958 5.066821 GGCTAATAGGCTGACCGAAGGAA 62.067 52.174 6.59 0.00 44.92 3.36
968 983 1.078214 CCTGCTGGGAAGATTGCGA 60.078 57.895 0.71 0.00 37.23 5.10
982 1000 2.650813 ATTCGGACGAGATGCCCTGC 62.651 60.000 0.00 0.00 0.00 4.85
984 1002 1.443407 CATTCGGACGAGATGCCCT 59.557 57.895 0.00 0.00 0.00 5.19
985 1003 1.595382 CCATTCGGACGAGATGCCC 60.595 63.158 0.00 0.00 0.00 5.36
987 1005 0.103208 ACTCCATTCGGACGAGATGC 59.897 55.000 0.00 0.00 35.91 3.91
1051 1069 2.269529 GGGCGGACGGAGAGGATAG 61.270 68.421 0.00 0.00 0.00 2.08
1144 1162 3.006859 TGAAATCAGGAAACAGAGCTCGA 59.993 43.478 8.37 0.00 0.00 4.04
1146 1164 5.695851 TTTGAAATCAGGAAACAGAGCTC 57.304 39.130 5.27 5.27 0.00 4.09
1147 1165 5.047519 CCATTTGAAATCAGGAAACAGAGCT 60.048 40.000 0.00 0.00 0.00 4.09
1148 1166 5.166398 CCATTTGAAATCAGGAAACAGAGC 58.834 41.667 0.00 0.00 0.00 4.09
1149 1167 5.477984 TCCCATTTGAAATCAGGAAACAGAG 59.522 40.000 4.20 0.00 0.00 3.35
1151 1169 5.726980 TCCCATTTGAAATCAGGAAACAG 57.273 39.130 4.20 0.00 0.00 3.16
1153 1171 5.105756 ACGATCCCATTTGAAATCAGGAAAC 60.106 40.000 9.52 6.97 0.00 2.78
1154 1172 5.016173 ACGATCCCATTTGAAATCAGGAAA 58.984 37.500 9.52 0.00 0.00 3.13
1164 1182 1.744522 CATGCACACGATCCCATTTGA 59.255 47.619 0.00 0.00 0.00 2.69
1169 1187 1.450134 GAGCATGCACACGATCCCA 60.450 57.895 21.98 0.00 0.00 4.37
1206 1226 1.329292 CGACACAGACGAAGGCAAAAA 59.671 47.619 0.00 0.00 0.00 1.94
1207 1227 0.934496 CGACACAGACGAAGGCAAAA 59.066 50.000 0.00 0.00 0.00 2.44
1208 1228 1.495584 GCGACACAGACGAAGGCAAA 61.496 55.000 0.00 0.00 0.00 3.68
1210 1230 2.355837 GCGACACAGACGAAGGCA 60.356 61.111 0.00 0.00 0.00 4.75
1211 1231 2.355837 TGCGACACAGACGAAGGC 60.356 61.111 0.00 0.00 0.00 4.35
1268 1289 4.464244 CACTGGATCACCTCTTCTGAGTTA 59.536 45.833 0.00 0.00 38.61 2.24
1274 1295 1.079490 TCCCACTGGATCACCTCTTCT 59.921 52.381 0.00 0.00 35.03 2.85
1458 1479 0.966179 AGTGTGTCTGCATGTACGGA 59.034 50.000 0.00 0.00 0.00 4.69
1459 1480 1.460743 CAAGTGTGTCTGCATGTACGG 59.539 52.381 0.00 0.00 0.00 4.02
1460 1481 2.403259 TCAAGTGTGTCTGCATGTACG 58.597 47.619 0.00 0.00 0.00 3.67
1515 1548 3.670359 CGCCATGAACAACGAACATCAAT 60.670 43.478 0.00 0.00 0.00 2.57
1545 1578 0.390340 GCATGCACGTCTCAGAGGAA 60.390 55.000 14.21 0.00 0.00 3.36
1590 1623 0.598562 TCCACGACACTCTTCAGAGC 59.401 55.000 3.58 0.00 45.79 4.09
1775 1808 9.011407 GTACTCATGACGAAGACAAAGTAATAG 57.989 37.037 0.00 0.00 36.75 1.73
1880 1935 3.070018 CTGAAAGTGCTTCTCATCCGTT 58.930 45.455 0.00 0.00 34.86 4.44
1973 2871 7.148018 ACGGAGTTGCAAATATCAGAATTGAAT 60.148 33.333 0.00 0.00 37.78 2.57
2367 3270 7.645942 TATACTCCGTATATGGGAATACCACT 58.354 38.462 11.19 0.00 39.81 4.00
2385 3288 7.044798 AGTTGAGCTGTTCAAAGATATACTCC 58.955 38.462 8.55 0.00 46.85 3.85
2386 3289 8.485976 AAGTTGAGCTGTTCAAAGATATACTC 57.514 34.615 8.55 0.00 46.85 2.59
2387 3290 8.854614 AAAGTTGAGCTGTTCAAAGATATACT 57.145 30.769 8.55 0.00 46.85 2.12
2393 3296 9.283768 TCATATAAAAGTTGAGCTGTTCAAAGA 57.716 29.630 8.55 0.00 46.85 2.52
2394 3297 9.897744 TTCATATAAAAGTTGAGCTGTTCAAAG 57.102 29.630 8.55 0.00 46.85 2.77
2434 3337 7.664731 ATGTTAATTGCAAAATGGAATGGAACA 59.335 29.630 18.58 18.58 42.76 3.18
2435 3338 7.432350 TGTTAATTGCAAAATGGAATGGAAC 57.568 32.000 1.71 12.00 37.43 3.62
2437 3340 7.664731 ACAATGTTAATTGCAAAATGGAATGGA 59.335 29.630 1.71 0.00 46.06 3.41
2438 3341 7.751348 CACAATGTTAATTGCAAAATGGAATGG 59.249 33.333 1.71 0.00 46.06 3.16
2439 3342 8.504815 TCACAATGTTAATTGCAAAATGGAATG 58.495 29.630 1.71 1.36 46.06 2.67
2440 3343 8.505625 GTCACAATGTTAATTGCAAAATGGAAT 58.494 29.630 1.71 0.00 46.06 3.01
2458 3362 2.221749 CGTCAACCACTCAGTCACAATG 59.778 50.000 0.00 0.00 0.00 2.82
2537 3442 8.082242 ACCAATCACTTTTAGCACAGATTTTAC 58.918 33.333 0.00 0.00 0.00 2.01
2540 3445 6.655078 ACCAATCACTTTTAGCACAGATTT 57.345 33.333 0.00 0.00 0.00 2.17
2541 3446 7.944729 ATACCAATCACTTTTAGCACAGATT 57.055 32.000 0.00 0.00 0.00 2.40
2542 3447 7.944729 AATACCAATCACTTTTAGCACAGAT 57.055 32.000 0.00 0.00 0.00 2.90
2543 3448 7.446931 TGAAATACCAATCACTTTTAGCACAGA 59.553 33.333 0.00 0.00 0.00 3.41
2544 3449 7.592938 TGAAATACCAATCACTTTTAGCACAG 58.407 34.615 0.00 0.00 0.00 3.66
2545 3450 7.309133 CCTGAAATACCAATCACTTTTAGCACA 60.309 37.037 0.00 0.00 0.00 4.57
2546 3451 7.029563 CCTGAAATACCAATCACTTTTAGCAC 58.970 38.462 0.00 0.00 0.00 4.40
2547 3452 6.719370 ACCTGAAATACCAATCACTTTTAGCA 59.281 34.615 0.00 0.00 0.00 3.49
2548 3453 7.158099 ACCTGAAATACCAATCACTTTTAGC 57.842 36.000 0.00 0.00 0.00 3.09
2549 3454 8.792633 TGAACCTGAAATACCAATCACTTTTAG 58.207 33.333 0.00 0.00 0.00 1.85
2550 3455 8.573035 GTGAACCTGAAATACCAATCACTTTTA 58.427 33.333 0.00 0.00 34.58 1.52
2591 3496 0.872021 CTATTCTGAGCACGCGGTCC 60.872 60.000 12.47 0.00 38.96 4.46
2603 3508 7.255035 CCAATAAGCTCAACACCATCTATTCTG 60.255 40.741 0.00 0.00 0.00 3.02
2662 3567 6.773976 AAACATTTCACCTCAGAAACTGAA 57.226 33.333 0.00 0.00 40.18 3.02
2684 3589 5.639757 CATCATCTATGCACCAACGAAAAA 58.360 37.500 0.00 0.00 0.00 1.94
2705 3616 5.010922 TGCAAAGGACAATAAACTTCAGCAT 59.989 36.000 0.00 0.00 33.34 3.79
2720 3631 2.417719 ACGAATGTCTCTGCAAAGGAC 58.582 47.619 0.00 6.46 0.00 3.85
2780 3691 5.246203 TCCCTTCTCCTTTATGATATCACCG 59.754 44.000 7.78 0.00 0.00 4.94
2863 3774 3.146847 GTTCAGTTGAAGTACAAGGGGG 58.853 50.000 0.00 0.00 39.30 5.40
2864 3775 4.086706 AGTTCAGTTGAAGTACAAGGGG 57.913 45.455 0.44 0.00 39.30 4.79
2887 3798 4.088648 GCGTGATGGTCGTTTCTTTAATG 58.911 43.478 0.00 0.00 0.00 1.90
2899 3810 1.922570 ATCGTTGTAGCGTGATGGTC 58.077 50.000 0.00 0.00 0.00 4.02
2901 3812 3.302480 GCTAAATCGTTGTAGCGTGATGG 60.302 47.826 0.00 0.00 33.90 3.51
3061 3994 0.035056 AGGCTGTCAATAGTGCCCAC 60.035 55.000 0.00 0.00 45.94 4.61
3070 4003 9.113838 CAACTATAAATTCTGTAGGCTGTCAAT 57.886 33.333 0.00 0.00 0.00 2.57
3099 4032 6.641062 CGTTTTATATGTTGCTAGACTGAGC 58.359 40.000 0.00 0.00 43.16 4.26
3114 4047 8.205131 ACGAACCATCTTTTAGCGTTTTATAT 57.795 30.769 0.00 0.00 0.00 0.86
3115 4048 7.599630 ACGAACCATCTTTTAGCGTTTTATA 57.400 32.000 0.00 0.00 0.00 0.98
3133 4149 6.364435 AGACTCGTAAAAATTCAGTACGAACC 59.636 38.462 15.04 11.10 46.28 3.62
3137 4153 7.007697 CCAAAGACTCGTAAAAATTCAGTACG 58.992 38.462 8.47 8.47 41.46 3.67
3144 4160 7.704899 CCTGAAAACCAAAGACTCGTAAAAATT 59.295 33.333 0.00 0.00 0.00 1.82
3252 4268 8.506168 AAGCATAACTCGAAATGAAGGATAAA 57.494 30.769 6.32 0.00 0.00 1.40
3282 4299 6.283694 TCCATCAACAGAGATTACTATGTGC 58.716 40.000 0.00 0.00 45.99 4.57
3285 4302 7.674120 TGGATCCATCAACAGAGATTACTATG 58.326 38.462 11.44 0.00 40.66 2.23
3286 4303 7.862274 TGGATCCATCAACAGAGATTACTAT 57.138 36.000 11.44 0.00 0.00 2.12
3298 4333 7.605449 TCTTTCTGAAATTTGGATCCATCAAC 58.395 34.615 17.06 7.33 0.00 3.18
3299 4334 7.779754 TCTTTCTGAAATTTGGATCCATCAA 57.220 32.000 17.06 8.46 0.00 2.57
3349 4387 1.145738 ACATATCACTTGGGGCCCATC 59.854 52.381 29.34 7.78 31.53 3.51
3358 4396 7.307396 CGCCCTCAGTAAAATACATATCACTTG 60.307 40.741 0.00 0.00 0.00 3.16
3370 4408 1.073284 ACACACCGCCCTCAGTAAAAT 59.927 47.619 0.00 0.00 0.00 1.82
3376 4414 1.961277 GAACACACACCGCCCTCAG 60.961 63.158 0.00 0.00 0.00 3.35
3389 4427 2.584492 AAACCTGCAAGCAAGAACAC 57.416 45.000 0.00 0.00 0.00 3.32
3500 4538 3.608316 AAAGCCAACACACACAATTGT 57.392 38.095 4.92 4.92 35.84 2.71
3525 4563 5.520376 AACACAAATCTGGTCCAAAGAAG 57.480 39.130 0.00 0.00 0.00 2.85
3535 4573 3.569701 AGTAGCCACAAACACAAATCTGG 59.430 43.478 0.00 0.00 0.00 3.86
3583 4621 1.002576 CATTCGGAAGCGCATATGCAA 60.003 47.619 26.52 12.10 42.21 4.08
3715 4760 0.616111 CTAGTGCTCCCACCTCTGGT 60.616 60.000 0.00 0.00 43.09 4.00
3796 4841 4.487714 TCTGTCCCTATGTGGTTGATTC 57.512 45.455 0.00 0.00 0.00 2.52
3877 4923 7.880059 ATAGAAAACTTTTCTGAATGCTTGC 57.120 32.000 22.11 0.00 0.00 4.01
3916 5937 7.117285 TGAACTCTTGTACATGCTAGATCAT 57.883 36.000 0.00 0.00 0.00 2.45
3961 5984 9.872684 AGGATGAAACAACTATTCATTCCATAT 57.127 29.630 14.39 0.00 45.11 1.78
4019 6042 5.474578 ACTTCACTTCATGTCAAGAGCTA 57.525 39.130 1.40 0.00 0.00 3.32
4022 6045 6.401903 GCATGTACTTCACTTCATGTCAAGAG 60.402 42.308 1.40 0.00 39.54 2.85
4081 6105 5.419542 TGGAACATGCTGTATCTCAGTAAC 58.580 41.667 0.00 0.00 45.23 2.50
4096 6120 3.191371 GGGAGTAGTTTGCTTGGAACATG 59.809 47.826 0.00 0.00 39.30 3.21
4097 6121 3.074538 AGGGAGTAGTTTGCTTGGAACAT 59.925 43.478 0.00 0.00 39.30 2.71
4114 6138 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
4116 6140 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
4117 6141 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
4118 6142 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
4119 6143 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
4120 6144 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
4133 6157 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
4134 6158 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
4135 6159 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
4136 6160 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
4137 6161 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
4138 6162 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
4139 6163 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
4140 6164 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
4141 6165 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
4142 6166 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
4143 6167 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
4144 6168 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
4145 6169 7.541091 TCGTATGTAGTCACTTGTTGAAATCTC 59.459 37.037 0.00 0.00 35.39 2.75
4146 6170 7.375834 TCGTATGTAGTCACTTGTTGAAATCT 58.624 34.615 0.00 0.00 35.39 2.40
4147 6171 7.576750 TCGTATGTAGTCACTTGTTGAAATC 57.423 36.000 0.00 0.00 35.39 2.17
4148 6172 7.360101 GCTTCGTATGTAGTCACTTGTTGAAAT 60.360 37.037 0.00 0.00 35.39 2.17
4149 6173 6.073980 GCTTCGTATGTAGTCACTTGTTGAAA 60.074 38.462 0.00 0.00 35.39 2.69
4150 6174 5.404366 GCTTCGTATGTAGTCACTTGTTGAA 59.596 40.000 0.00 0.00 35.39 2.69
4151 6175 4.921515 GCTTCGTATGTAGTCACTTGTTGA 59.078 41.667 0.00 0.00 0.00 3.18
4152 6176 4.684242 TGCTTCGTATGTAGTCACTTGTTG 59.316 41.667 0.00 0.00 0.00 3.33
4153 6177 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
4154 6178 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
4155 6179 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
4156 6180 6.649141 TCATTTTGCTTCGTATGTAGTCACTT 59.351 34.615 0.00 0.00 0.00 3.16
4157 6181 6.163476 TCATTTTGCTTCGTATGTAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
4158 6182 6.403333 TCATTTTGCTTCGTATGTAGTCAC 57.597 37.500 0.00 0.00 0.00 3.67
4159 6183 5.063438 GCTCATTTTGCTTCGTATGTAGTCA 59.937 40.000 0.00 0.00 0.00 3.41
4160 6184 5.493735 GCTCATTTTGCTTCGTATGTAGTC 58.506 41.667 0.00 0.00 0.00 2.59
4161 6185 4.032900 CGCTCATTTTGCTTCGTATGTAGT 59.967 41.667 0.00 0.00 0.00 2.73
4162 6186 4.267690 TCGCTCATTTTGCTTCGTATGTAG 59.732 41.667 0.00 0.00 0.00 2.74
4163 6187 4.177783 TCGCTCATTTTGCTTCGTATGTA 58.822 39.130 0.00 0.00 0.00 2.29
4164 6188 3.000041 TCGCTCATTTTGCTTCGTATGT 59.000 40.909 0.00 0.00 0.00 2.29
4165 6189 3.656651 TCGCTCATTTTGCTTCGTATG 57.343 42.857 0.00 0.00 0.00 2.39
4166 6190 4.572389 AGATTCGCTCATTTTGCTTCGTAT 59.428 37.500 0.00 0.00 0.00 3.06
4167 6191 3.932710 AGATTCGCTCATTTTGCTTCGTA 59.067 39.130 0.00 0.00 0.00 3.43
4168 6192 2.744202 AGATTCGCTCATTTTGCTTCGT 59.256 40.909 0.00 0.00 0.00 3.85
4169 6193 3.395858 AGATTCGCTCATTTTGCTTCG 57.604 42.857 0.00 0.00 0.00 3.79
4170 6194 5.024555 GTGTAGATTCGCTCATTTTGCTTC 58.975 41.667 0.00 0.00 0.00 3.86
4171 6195 4.697352 AGTGTAGATTCGCTCATTTTGCTT 59.303 37.500 0.00 0.00 0.00 3.91
4172 6196 4.256920 AGTGTAGATTCGCTCATTTTGCT 58.743 39.130 0.00 0.00 0.00 3.91
4173 6197 4.606457 AGTGTAGATTCGCTCATTTTGC 57.394 40.909 0.00 0.00 0.00 3.68
4174 6198 8.948853 TTTAAAGTGTAGATTCGCTCATTTTG 57.051 30.769 0.00 0.00 0.00 2.44
4179 6203 9.378551 ACATATTTTAAAGTGTAGATTCGCTCA 57.621 29.630 0.00 0.00 0.00 4.26
4180 6204 9.851043 GACATATTTTAAAGTGTAGATTCGCTC 57.149 33.333 0.00 0.00 0.00 5.03
4181 6205 9.601217 AGACATATTTTAAAGTGTAGATTCGCT 57.399 29.630 0.00 0.00 0.00 4.93
4242 6266 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
4243 6267 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
4244 6268 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
4245 6269 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
4246 6270 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
4247 6271 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
4248 6272 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
4249 6273 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
4250 6274 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
4251 6275 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
4252 6276 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
4253 6277 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
4254 6278 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
4255 6279 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
4256 6280 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
4257 6281 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
4258 6282 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
4259 6283 3.463048 AACTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
4260 6284 3.463048 AAACTACTCCCTCCGTTCCTA 57.537 47.619 0.00 0.00 0.00 2.94
4261 6285 2.322339 AAACTACTCCCTCCGTTCCT 57.678 50.000 0.00 0.00 0.00 3.36
4262 6286 3.413846 AAAAACTACTCCCTCCGTTCC 57.586 47.619 0.00 0.00 0.00 3.62
4263 6287 5.745769 CGTATAAAAACTACTCCCTCCGTTC 59.254 44.000 0.00 0.00 0.00 3.95
4264 6288 5.418840 TCGTATAAAAACTACTCCCTCCGTT 59.581 40.000 0.00 0.00 0.00 4.44
4265 6289 4.949856 TCGTATAAAAACTACTCCCTCCGT 59.050 41.667 0.00 0.00 0.00 4.69
4266 6290 5.277047 GTCGTATAAAAACTACTCCCTCCG 58.723 45.833 0.00 0.00 0.00 4.63
4267 6291 5.127682 TGGTCGTATAAAAACTACTCCCTCC 59.872 44.000 0.00 0.00 0.00 4.30
4268 6292 6.212888 TGGTCGTATAAAAACTACTCCCTC 57.787 41.667 0.00 0.00 0.00 4.30
4269 6293 6.610075 TTGGTCGTATAAAAACTACTCCCT 57.390 37.500 0.00 0.00 0.00 4.20
4270 6294 7.854557 AATTGGTCGTATAAAAACTACTCCC 57.145 36.000 0.00 0.00 0.00 4.30
4271 6295 9.159364 AGAAATTGGTCGTATAAAAACTACTCC 57.841 33.333 0.00 0.00 0.00 3.85
4274 6298 9.550811 CCAAGAAATTGGTCGTATAAAAACTAC 57.449 33.333 0.00 0.00 37.32 2.73
4275 6299 8.238631 GCCAAGAAATTGGTCGTATAAAAACTA 58.761 33.333 8.69 0.00 43.90 2.24
4276 6300 7.088272 GCCAAGAAATTGGTCGTATAAAAACT 58.912 34.615 8.69 0.00 43.90 2.66
4300 6324 3.633525 TCCATGCAATTGGATAGTTCTGC 59.366 43.478 12.50 0.00 40.90 4.26
4330 6354 6.038161 CAGAGTAACACCAACAGTCAAAATCA 59.962 38.462 0.00 0.00 0.00 2.57
4332 6356 5.885912 ACAGAGTAACACCAACAGTCAAAAT 59.114 36.000 0.00 0.00 0.00 1.82
4343 6367 6.413783 TCTTCATAACACAGAGTAACACCA 57.586 37.500 0.00 0.00 0.00 4.17
4370 6394 6.455360 TTGTAAAAGGGATCATGAGCAATC 57.545 37.500 13.85 0.00 0.00 2.67
4406 6433 8.250332 GTGGAGTTAATAGCATGAATTTTCCAA 58.750 33.333 0.00 0.00 32.24 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.