Multiple sequence alignment - TraesCS5B01G165600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G165600 chr5B 100.000 3368 0 0 1 3368 307268684 307272051 0.000000e+00 6220
1 TraesCS5B01G165600 chr5D 96.690 3051 80 7 242 3273 270250983 270254031 0.000000e+00 5055
2 TraesCS5B01G165600 chr5D 98.889 90 1 0 3279 3368 270254140 270254229 9.670000e-36 161
3 TraesCS5B01G165600 chr5D 82.911 158 15 6 4 161 345685069 345684924 7.580000e-27 132
4 TraesCS5B01G165600 chr5A 95.718 2429 77 17 175 2595 359734634 359737043 0.000000e+00 3884
5 TraesCS5B01G165600 chr5A 93.029 789 28 9 2588 3368 359737171 359737940 0.000000e+00 1127
6 TraesCS5B01G165600 chr5A 83.815 173 14 8 1 173 478893942 478894100 5.820000e-33 152
7 TraesCS5B01G165600 chr5A 85.235 149 10 6 4 152 509107041 509106905 3.500000e-30 143
8 TraesCS5B01G165600 chr2B 83.019 159 15 6 1 159 136151438 136151584 2.110000e-27 134
9 TraesCS5B01G165600 chr6B 85.714 112 9 1 4 115 13966730 13966626 9.880000e-21 111
10 TraesCS5B01G165600 chr6A 85.714 112 9 2 4 115 277273568 277273464 9.880000e-21 111
11 TraesCS5B01G165600 chr1B 86.239 109 8 2 7 115 653884912 653884811 9.880000e-21 111
12 TraesCS5B01G165600 chr4D 84.348 115 11 2 1 115 235487403 235487510 4.600000e-19 106
13 TraesCS5B01G165600 chr4A 84.821 112 10 2 4 115 635963449 635963345 4.600000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G165600 chr5B 307268684 307272051 3367 False 6220.0 6220 100.0000 1 3368 1 chr5B.!!$F1 3367
1 TraesCS5B01G165600 chr5D 270250983 270254229 3246 False 2608.0 5055 97.7895 242 3368 2 chr5D.!!$F1 3126
2 TraesCS5B01G165600 chr5A 359734634 359737940 3306 False 2505.5 3884 94.3735 175 3368 2 chr5A.!!$F2 3193

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
455 469 0.043334 CTTCTTCCTCCTCCCCCTCA 59.957 60.0 0.0 0.0 0.00 3.86 F
1039 1053 0.514255 CTCGTACTCGTCCGACAACA 59.486 55.0 0.0 0.0 38.33 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1869 1889 1.065126 GTCCCTGCTGCTAAGGTTGAT 60.065 52.381 0.00 0.0 32.45 2.57 R
2693 2857 0.173481 CAGCTACCGCTCTGCTGTAA 59.827 55.000 6.09 0.0 45.15 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.961433 GCGAACGTAAAAACTAGTCAGT 57.039 40.909 0.00 0.00 36.19 3.41
22 23 4.927773 GCGAACGTAAAAACTAGTCAGTC 58.072 43.478 0.00 0.00 32.29 3.51
23 24 4.678742 GCGAACGTAAAAACTAGTCAGTCT 59.321 41.667 0.00 0.00 32.29 3.24
24 25 5.174579 GCGAACGTAAAAACTAGTCAGTCTT 59.825 40.000 0.00 0.00 32.29 3.01
25 26 6.292008 GCGAACGTAAAAACTAGTCAGTCTTT 60.292 38.462 0.00 0.00 32.29 2.52
26 27 7.615790 CGAACGTAAAAACTAGTCAGTCTTTT 58.384 34.615 0.00 1.58 32.29 2.27
27 28 7.578024 CGAACGTAAAAACTAGTCAGTCTTTTG 59.422 37.037 10.96 1.03 32.29 2.44
28 29 7.242914 ACGTAAAAACTAGTCAGTCTTTTGG 57.757 36.000 10.96 6.72 32.29 3.28
29 30 6.259387 ACGTAAAAACTAGTCAGTCTTTTGGG 59.741 38.462 10.96 6.46 32.29 4.12
30 31 6.259387 CGTAAAAACTAGTCAGTCTTTTGGGT 59.741 38.462 10.96 0.00 32.29 4.51
31 32 7.439056 CGTAAAAACTAGTCAGTCTTTTGGGTA 59.561 37.037 10.96 0.00 32.29 3.69
32 33 9.281371 GTAAAAACTAGTCAGTCTTTTGGGTAT 57.719 33.333 10.96 0.00 32.29 2.73
33 34 7.745620 AAAACTAGTCAGTCTTTTGGGTATG 57.254 36.000 0.00 0.00 32.29 2.39
34 35 6.681729 AACTAGTCAGTCTTTTGGGTATGA 57.318 37.500 0.00 0.00 32.29 2.15
35 36 6.681729 ACTAGTCAGTCTTTTGGGTATGAA 57.318 37.500 0.00 0.00 0.00 2.57
36 37 7.074653 ACTAGTCAGTCTTTTGGGTATGAAA 57.925 36.000 0.00 0.00 0.00 2.69
37 38 6.935208 ACTAGTCAGTCTTTTGGGTATGAAAC 59.065 38.462 0.00 0.00 0.00 2.78
38 39 5.941788 AGTCAGTCTTTTGGGTATGAAACT 58.058 37.500 0.00 0.00 0.00 2.66
39 40 5.998363 AGTCAGTCTTTTGGGTATGAAACTC 59.002 40.000 0.00 0.00 0.00 3.01
40 41 5.763204 GTCAGTCTTTTGGGTATGAAACTCA 59.237 40.000 0.00 0.00 36.54 3.41
41 42 6.431234 GTCAGTCTTTTGGGTATGAAACTCAT 59.569 38.462 0.00 0.00 38.75 2.90
42 43 7.004086 TCAGTCTTTTGGGTATGAAACTCATT 58.996 34.615 0.00 0.00 38.75 2.57
43 44 7.505585 TCAGTCTTTTGGGTATGAAACTCATTT 59.494 33.333 0.00 0.00 38.75 2.32
44 45 7.596248 CAGTCTTTTGGGTATGAAACTCATTTG 59.404 37.037 0.00 0.00 38.75 2.32
45 46 7.505585 AGTCTTTTGGGTATGAAACTCATTTGA 59.494 33.333 0.00 0.00 38.75 2.69
47 48 5.643379 TTGGGTATGAAACTCATTTGAGC 57.357 39.130 7.48 0.00 45.79 4.26
48 49 3.689161 TGGGTATGAAACTCATTTGAGCG 59.311 43.478 7.48 0.00 45.79 5.03
49 50 3.938963 GGGTATGAAACTCATTTGAGCGA 59.061 43.478 7.48 0.00 45.79 4.93
50 51 4.034510 GGGTATGAAACTCATTTGAGCGAG 59.965 45.833 7.48 0.00 45.79 5.03
51 52 4.870426 GGTATGAAACTCATTTGAGCGAGA 59.130 41.667 7.48 0.00 45.79 4.04
52 53 5.006165 GGTATGAAACTCATTTGAGCGAGAG 59.994 44.000 7.48 0.00 45.79 3.20
53 54 3.995199 TGAAACTCATTTGAGCGAGAGT 58.005 40.909 7.48 0.00 45.79 3.24
54 55 5.134202 TGAAACTCATTTGAGCGAGAGTA 57.866 39.130 7.48 0.00 45.79 2.59
55 56 5.164233 TGAAACTCATTTGAGCGAGAGTAG 58.836 41.667 7.48 0.00 45.79 2.57
56 57 4.792521 AACTCATTTGAGCGAGAGTAGT 57.207 40.909 7.48 0.00 45.79 2.73
57 58 5.899120 AACTCATTTGAGCGAGAGTAGTA 57.101 39.130 7.48 0.00 45.79 1.82
58 59 6.458232 AACTCATTTGAGCGAGAGTAGTAT 57.542 37.500 7.48 0.00 45.79 2.12
59 60 6.458232 ACTCATTTGAGCGAGAGTAGTATT 57.542 37.500 7.48 0.00 45.79 1.89
60 61 7.569639 ACTCATTTGAGCGAGAGTAGTATTA 57.430 36.000 7.48 0.00 45.79 0.98
61 62 7.644490 ACTCATTTGAGCGAGAGTAGTATTAG 58.356 38.462 7.48 0.00 45.79 1.73
62 63 6.971602 TCATTTGAGCGAGAGTAGTATTAGG 58.028 40.000 0.00 0.00 0.00 2.69
63 64 6.771267 TCATTTGAGCGAGAGTAGTATTAGGA 59.229 38.462 0.00 0.00 0.00 2.94
64 65 7.448777 TCATTTGAGCGAGAGTAGTATTAGGAT 59.551 37.037 0.00 0.00 0.00 3.24
65 66 6.561737 TTGAGCGAGAGTAGTATTAGGATG 57.438 41.667 0.00 0.00 0.00 3.51
66 67 5.004448 TGAGCGAGAGTAGTATTAGGATGG 58.996 45.833 0.00 0.00 0.00 3.51
67 68 4.337145 AGCGAGAGTAGTATTAGGATGGG 58.663 47.826 0.00 0.00 0.00 4.00
68 69 4.080687 GCGAGAGTAGTATTAGGATGGGT 58.919 47.826 0.00 0.00 0.00 4.51
69 70 4.082679 GCGAGAGTAGTATTAGGATGGGTG 60.083 50.000 0.00 0.00 0.00 4.61
70 71 5.314529 CGAGAGTAGTATTAGGATGGGTGA 58.685 45.833 0.00 0.00 0.00 4.02
71 72 5.181622 CGAGAGTAGTATTAGGATGGGTGAC 59.818 48.000 0.00 0.00 0.00 3.67
83 84 3.813150 GGTGACCTTCTGGCTCCT 58.187 61.111 0.00 0.00 36.63 3.69
84 85 1.298014 GGTGACCTTCTGGCTCCTG 59.702 63.158 0.00 0.00 36.63 3.86
85 86 1.194781 GGTGACCTTCTGGCTCCTGA 61.195 60.000 0.00 0.00 36.63 3.86
86 87 0.687354 GTGACCTTCTGGCTCCTGAA 59.313 55.000 7.79 7.79 36.63 3.02
87 88 1.072331 GTGACCTTCTGGCTCCTGAAA 59.928 52.381 9.10 0.00 36.63 2.69
88 89 1.774254 TGACCTTCTGGCTCCTGAAAA 59.226 47.619 9.10 0.00 36.63 2.29
89 90 2.224621 TGACCTTCTGGCTCCTGAAAAG 60.225 50.000 9.10 6.67 36.63 2.27
90 91 1.172175 CCTTCTGGCTCCTGAAAAGC 58.828 55.000 9.10 0.00 39.09 3.51
95 96 3.896479 GCTCCTGAAAAGCCCTCG 58.104 61.111 0.00 0.00 33.53 4.63
96 97 1.003233 GCTCCTGAAAAGCCCTCGT 60.003 57.895 0.00 0.00 33.53 4.18
97 98 1.301677 GCTCCTGAAAAGCCCTCGTG 61.302 60.000 0.00 0.00 33.53 4.35
98 99 0.321671 CTCCTGAAAAGCCCTCGTGA 59.678 55.000 0.00 0.00 0.00 4.35
99 100 0.762418 TCCTGAAAAGCCCTCGTGAA 59.238 50.000 0.00 0.00 0.00 3.18
100 101 1.142060 TCCTGAAAAGCCCTCGTGAAA 59.858 47.619 0.00 0.00 0.00 2.69
101 102 2.162681 CCTGAAAAGCCCTCGTGAAAT 58.837 47.619 0.00 0.00 0.00 2.17
102 103 2.095059 CCTGAAAAGCCCTCGTGAAATG 60.095 50.000 0.00 0.00 0.00 2.32
103 104 1.885887 TGAAAAGCCCTCGTGAAATGG 59.114 47.619 0.00 0.00 0.00 3.16
104 105 1.886542 GAAAAGCCCTCGTGAAATGGT 59.113 47.619 0.00 0.00 0.00 3.55
105 106 1.995376 AAAGCCCTCGTGAAATGGTT 58.005 45.000 0.00 0.00 0.00 3.67
106 107 1.995376 AAGCCCTCGTGAAATGGTTT 58.005 45.000 0.00 0.00 0.00 3.27
107 108 1.534729 AGCCCTCGTGAAATGGTTTC 58.465 50.000 0.00 0.00 40.08 2.78
108 109 1.202879 AGCCCTCGTGAAATGGTTTCA 60.203 47.619 1.24 1.24 46.68 2.69
127 128 9.647918 TGGTTTCATATCTAGACTATCTCAACT 57.352 33.333 0.00 0.00 0.00 3.16
135 136 8.588290 ATCTAGACTATCTCAACTCAACTTGT 57.412 34.615 0.00 0.00 0.00 3.16
136 137 8.410673 TCTAGACTATCTCAACTCAACTTGTT 57.589 34.615 0.00 0.00 0.00 2.83
137 138 8.861086 TCTAGACTATCTCAACTCAACTTGTTT 58.139 33.333 0.00 0.00 0.00 2.83
138 139 7.721286 AGACTATCTCAACTCAACTTGTTTG 57.279 36.000 0.00 0.00 36.42 2.93
139 140 6.708054 AGACTATCTCAACTCAACTTGTTTGG 59.292 38.462 6.22 0.00 35.69 3.28
140 141 6.591935 ACTATCTCAACTCAACTTGTTTGGA 58.408 36.000 6.22 4.26 35.69 3.53
141 142 7.054124 ACTATCTCAACTCAACTTGTTTGGAA 58.946 34.615 6.22 0.00 35.69 3.53
142 143 5.560966 TCTCAACTCAACTTGTTTGGAAC 57.439 39.130 6.22 0.00 35.69 3.62
143 144 5.007034 TCTCAACTCAACTTGTTTGGAACA 58.993 37.500 6.22 0.00 40.21 3.18
159 160 5.728351 TGGAACAAAAGACTTCGTAAGTG 57.272 39.130 5.20 0.00 37.33 3.16
160 161 5.421277 TGGAACAAAAGACTTCGTAAGTGA 58.579 37.500 5.20 0.00 37.33 3.41
161 162 6.053005 TGGAACAAAAGACTTCGTAAGTGAT 58.947 36.000 5.20 0.00 37.33 3.06
162 163 6.018262 TGGAACAAAAGACTTCGTAAGTGATG 60.018 38.462 5.20 2.78 37.33 3.07
163 164 5.924475 ACAAAAGACTTCGTAAGTGATGG 57.076 39.130 5.20 0.00 43.03 3.51
164 165 5.365619 ACAAAAGACTTCGTAAGTGATGGT 58.634 37.500 5.20 0.00 43.03 3.55
165 166 6.518493 ACAAAAGACTTCGTAAGTGATGGTA 58.482 36.000 5.20 0.00 43.03 3.25
166 167 6.987992 ACAAAAGACTTCGTAAGTGATGGTAA 59.012 34.615 5.20 0.00 43.03 2.85
167 168 7.170998 ACAAAAGACTTCGTAAGTGATGGTAAG 59.829 37.037 5.20 0.00 43.03 2.34
168 169 5.979288 AGACTTCGTAAGTGATGGTAAGT 57.021 39.130 5.20 0.00 43.03 2.24
169 170 5.710984 AGACTTCGTAAGTGATGGTAAGTG 58.289 41.667 5.20 0.00 43.03 3.16
170 171 5.475909 AGACTTCGTAAGTGATGGTAAGTGA 59.524 40.000 5.20 0.00 43.03 3.41
171 172 5.710984 ACTTCGTAAGTGATGGTAAGTGAG 58.289 41.667 0.35 0.00 41.01 3.51
172 173 5.243283 ACTTCGTAAGTGATGGTAAGTGAGT 59.757 40.000 0.35 0.00 41.01 3.41
173 174 5.055642 TCGTAAGTGATGGTAAGTGAGTG 57.944 43.478 0.00 0.00 39.48 3.51
183 184 4.494484 TGGTAAGTGAGTGATTCATCGTG 58.506 43.478 0.00 0.00 38.29 4.35
228 229 3.912496 AAAGGAAAAGCAAGCAAACCT 57.088 38.095 0.00 0.00 0.00 3.50
233 234 3.190535 GGAAAAGCAAGCAAACCTATCGA 59.809 43.478 0.00 0.00 0.00 3.59
234 235 4.406943 GAAAAGCAAGCAAACCTATCGAG 58.593 43.478 0.00 0.00 0.00 4.04
236 237 2.622436 AGCAAGCAAACCTATCGAGAC 58.378 47.619 0.00 0.00 0.00 3.36
275 278 2.504026 CGTTGCGCGCTCTCACTA 60.504 61.111 33.29 6.82 0.00 2.74
285 288 2.416027 GCGCTCTCACTATCACTGACAA 60.416 50.000 0.00 0.00 0.00 3.18
317 320 3.406498 ACACTCTCCCCTATATAAGGCCT 59.594 47.826 0.00 0.00 45.03 5.19
326 329 3.515901 CCTATATAAGGCCTCGCTTTCCT 59.484 47.826 5.23 0.00 38.97 3.36
361 365 2.743636 TGACCTCGTCAACTCATTCC 57.256 50.000 0.00 0.00 39.78 3.01
406 420 3.136123 CACGCCATGGCTCCAAGG 61.136 66.667 33.07 19.22 39.32 3.61
428 442 0.338814 TCCACCCTTCTACCTCCTCC 59.661 60.000 0.00 0.00 0.00 4.30
429 443 0.340208 CCACCCTTCTACCTCCTCCT 59.660 60.000 0.00 0.00 0.00 3.69
435 449 0.747283 TTCTACCTCCTCCTCGTCGC 60.747 60.000 0.00 0.00 0.00 5.19
452 466 2.379459 GCCTTCTTCCTCCTCCCCC 61.379 68.421 0.00 0.00 0.00 5.40
455 469 0.043334 CTTCTTCCTCCTCCCCCTCA 59.957 60.000 0.00 0.00 0.00 3.86
460 474 3.474570 CTCCTCCCCCTCAAGCCG 61.475 72.222 0.00 0.00 0.00 5.52
610 624 1.230497 CCTCTTCCCGCTCCCTCTA 59.770 63.158 0.00 0.00 0.00 2.43
619 633 1.321074 CGCTCCCTCTACCGTTTCCT 61.321 60.000 0.00 0.00 0.00 3.36
695 709 3.157949 CCTCCCGCCTCTCCTTCC 61.158 72.222 0.00 0.00 0.00 3.46
765 779 4.361971 TCTCCCGCTCGAGGTGGT 62.362 66.667 15.58 0.00 43.71 4.16
853 867 4.778143 GCGGTGGACCTGCGGAAT 62.778 66.667 0.00 0.00 0.00 3.01
860 874 3.039202 GACCTGCGGAATGGCAACG 62.039 63.158 0.00 0.00 43.39 4.10
861 875 2.745884 CCTGCGGAATGGCAACGA 60.746 61.111 12.68 0.00 43.39 3.85
930 944 2.125673 TTCCTTAGCCACGCGAGC 60.126 61.111 15.93 16.13 0.00 5.03
1025 1039 1.001764 TCGGCTTCCAGGTCTCGTA 60.002 57.895 0.00 0.00 0.00 3.43
1039 1053 0.514255 CTCGTACTCGTCCGACAACA 59.486 55.000 0.00 0.00 38.33 3.33
1228 1248 3.125376 ATGGGGCTCGGCATTCCTC 62.125 63.158 0.00 0.00 0.00 3.71
1231 1251 2.586792 GGCTCGGCATTCCTCTGT 59.413 61.111 0.00 0.00 0.00 3.41
1467 1487 1.521681 GCGCTCTGGGGTCACATAC 60.522 63.158 0.00 0.00 0.00 2.39
1819 1839 2.542766 TTCGCATTTCAATCCGAAGC 57.457 45.000 0.00 0.00 35.12 3.86
1869 1889 2.305343 GGATCCTAGTACTAGCCCTCGA 59.695 54.545 22.39 14.57 31.95 4.04
1944 1964 2.431454 GGAAGAGCCACAGAAAAGAGG 58.569 52.381 0.00 0.00 36.34 3.69
2212 2232 5.931146 GTCATGAGGAATGTTCTAGGCATAG 59.069 44.000 0.00 0.00 37.56 2.23
2355 2375 7.230108 TCAAGTGATCTCTTTGAGCTGAAAATT 59.770 33.333 7.30 0.00 31.32 1.82
2459 2479 8.054152 TCTGTTTAATCTATGAAATTGCTGCA 57.946 30.769 0.00 0.00 0.00 4.41
2460 2480 8.689061 TCTGTTTAATCTATGAAATTGCTGCAT 58.311 29.630 1.84 0.00 0.00 3.96
2501 2521 7.011950 CCAAATTATGCGAACAACTAGTCCATA 59.988 37.037 0.00 0.00 0.00 2.74
2548 2568 2.354259 GCATTAGCTCAGCACTTCAGT 58.646 47.619 0.00 0.00 37.91 3.41
2615 2770 0.957888 GTCCCTGAGGCTGAAGCAAC 60.958 60.000 4.43 0.00 44.36 4.17
2616 2771 1.073722 CCCTGAGGCTGAAGCAACA 59.926 57.895 4.43 2.94 44.36 3.33
2617 2772 0.959372 CCCTGAGGCTGAAGCAACAG 60.959 60.000 15.96 15.96 44.36 3.16
2618 2773 0.035881 CCTGAGGCTGAAGCAACAGA 59.964 55.000 21.20 0.00 43.16 3.41
2619 2774 1.339824 CCTGAGGCTGAAGCAACAGAT 60.340 52.381 21.20 2.19 43.16 2.90
2620 2775 2.008329 CTGAGGCTGAAGCAACAGATC 58.992 52.381 17.20 10.17 43.16 2.75
2622 2777 0.694771 AGGCTGAAGCAACAGATCCA 59.305 50.000 13.05 0.00 44.36 3.41
2624 2779 1.200948 GGCTGAAGCAACAGATCCAAC 59.799 52.381 13.05 0.00 44.36 3.77
2673 2837 7.989826 ACCTGCTGATAGAAATCAATTGTAAC 58.010 34.615 5.13 0.00 41.57 2.50
2687 2851 2.130272 TGTAACTTGCACCAACACCA 57.870 45.000 0.00 0.00 0.00 4.17
2693 2857 0.106268 TTGCACCAACACCACCTCAT 60.106 50.000 0.00 0.00 0.00 2.90
2723 2887 1.421410 CGGTAGCTGAATCACACGCC 61.421 60.000 0.00 0.00 0.00 5.68
2986 3150 7.867305 TGGTGATAGTTTGTGAAGTTTGTAA 57.133 32.000 0.00 0.00 0.00 2.41
3042 3206 1.518056 TACGGCTCGGTGAGTTCGTT 61.518 55.000 17.17 7.06 40.06 3.85
3073 3237 6.546484 TCTTTCAGGGAGAACTCATGAATTT 58.454 36.000 16.49 0.00 36.99 1.82
3080 3244 5.495640 GGAGAACTCATGAATTTCAGAGGT 58.504 41.667 20.31 16.99 30.89 3.85
3216 3380 6.281848 TCATCTCTTGACAACGTTGTAAAC 57.718 37.500 32.39 20.76 42.43 2.01
3273 3437 4.986054 TTTCCTCCCAAACTTGCTACTA 57.014 40.909 0.00 0.00 0.00 1.82
3276 3440 4.680407 TCCTCCCAAACTTGCTACTACTA 58.320 43.478 0.00 0.00 0.00 1.82
3294 3561 5.819901 ACTACTACAGTACGTCTTATGGGTC 59.180 44.000 0.00 0.00 34.98 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.678742 AGACTGACTAGTTTTTACGTTCGC 59.321 41.667 0.00 0.00 37.25 4.70
1 2 6.744550 AAGACTGACTAGTTTTTACGTTCG 57.255 37.500 0.00 0.00 37.25 3.95
2 3 7.849515 CCAAAAGACTGACTAGTTTTTACGTTC 59.150 37.037 0.00 0.00 39.50 3.95
3 4 7.201670 CCCAAAAGACTGACTAGTTTTTACGTT 60.202 37.037 0.00 0.00 39.50 3.99
4 5 6.259387 CCCAAAAGACTGACTAGTTTTTACGT 59.741 38.462 0.00 0.00 39.50 3.57
5 6 6.259387 ACCCAAAAGACTGACTAGTTTTTACG 59.741 38.462 0.00 0.00 39.50 3.18
6 7 7.563888 ACCCAAAAGACTGACTAGTTTTTAC 57.436 36.000 0.00 0.00 39.50 2.01
7 8 9.280174 CATACCCAAAAGACTGACTAGTTTTTA 57.720 33.333 0.00 0.00 39.50 1.52
8 9 7.996644 TCATACCCAAAAGACTGACTAGTTTTT 59.003 33.333 0.00 0.00 41.44 1.94
9 10 7.514721 TCATACCCAAAAGACTGACTAGTTTT 58.485 34.615 0.00 0.00 37.25 2.43
10 11 7.074653 TCATACCCAAAAGACTGACTAGTTT 57.925 36.000 0.00 0.00 37.25 2.66
11 12 6.681729 TCATACCCAAAAGACTGACTAGTT 57.318 37.500 0.00 0.00 37.25 2.24
12 13 6.681729 TTCATACCCAAAAGACTGACTAGT 57.318 37.500 0.00 0.00 40.66 2.57
13 14 7.162082 AGTTTCATACCCAAAAGACTGACTAG 58.838 38.462 0.00 0.00 0.00 2.57
14 15 7.074653 AGTTTCATACCCAAAAGACTGACTA 57.925 36.000 0.00 0.00 0.00 2.59
15 16 5.941788 AGTTTCATACCCAAAAGACTGACT 58.058 37.500 0.00 0.00 0.00 3.41
16 17 5.763204 TGAGTTTCATACCCAAAAGACTGAC 59.237 40.000 0.00 0.00 0.00 3.51
17 18 5.935945 TGAGTTTCATACCCAAAAGACTGA 58.064 37.500 0.00 0.00 0.00 3.41
18 19 6.824305 ATGAGTTTCATACCCAAAAGACTG 57.176 37.500 0.00 0.00 34.88 3.51
19 20 7.505585 TCAAATGAGTTTCATACCCAAAAGACT 59.494 33.333 0.00 0.00 35.76 3.24
20 21 7.657336 TCAAATGAGTTTCATACCCAAAAGAC 58.343 34.615 0.00 0.00 35.76 3.01
21 22 7.523709 GCTCAAATGAGTTTCATACCCAAAAGA 60.524 37.037 11.77 0.00 43.85 2.52
22 23 6.587608 GCTCAAATGAGTTTCATACCCAAAAG 59.412 38.462 11.77 0.00 43.85 2.27
23 24 6.454795 GCTCAAATGAGTTTCATACCCAAAA 58.545 36.000 11.77 0.00 43.85 2.44
24 25 5.335583 CGCTCAAATGAGTTTCATACCCAAA 60.336 40.000 11.77 0.00 43.85 3.28
25 26 4.155826 CGCTCAAATGAGTTTCATACCCAA 59.844 41.667 11.77 0.00 43.85 4.12
26 27 3.689161 CGCTCAAATGAGTTTCATACCCA 59.311 43.478 11.77 0.00 43.85 4.51
27 28 3.938963 TCGCTCAAATGAGTTTCATACCC 59.061 43.478 11.77 0.00 43.85 3.69
28 29 4.870426 TCTCGCTCAAATGAGTTTCATACC 59.130 41.667 11.77 0.00 43.85 2.73
29 30 5.578727 ACTCTCGCTCAAATGAGTTTCATAC 59.421 40.000 11.77 0.00 43.85 2.39
30 31 5.724328 ACTCTCGCTCAAATGAGTTTCATA 58.276 37.500 11.77 0.00 43.85 2.15
31 32 4.573900 ACTCTCGCTCAAATGAGTTTCAT 58.426 39.130 11.77 0.00 43.85 2.57
32 33 3.995199 ACTCTCGCTCAAATGAGTTTCA 58.005 40.909 11.77 0.00 43.85 2.69
33 34 5.164954 ACTACTCTCGCTCAAATGAGTTTC 58.835 41.667 11.77 0.00 43.85 2.78
34 35 5.140747 ACTACTCTCGCTCAAATGAGTTT 57.859 39.130 11.77 0.00 43.85 2.66
35 36 4.792521 ACTACTCTCGCTCAAATGAGTT 57.207 40.909 11.77 0.00 43.85 3.01
36 37 6.458232 AATACTACTCTCGCTCAAATGAGT 57.542 37.500 11.77 0.00 43.85 3.41
37 38 7.041030 TCCTAATACTACTCTCGCTCAAATGAG 60.041 40.741 6.05 6.05 44.75 2.90
38 39 6.771267 TCCTAATACTACTCTCGCTCAAATGA 59.229 38.462 0.00 0.00 0.00 2.57
39 40 6.971602 TCCTAATACTACTCTCGCTCAAATG 58.028 40.000 0.00 0.00 0.00 2.32
40 41 7.309499 CCATCCTAATACTACTCTCGCTCAAAT 60.309 40.741 0.00 0.00 0.00 2.32
41 42 6.016192 CCATCCTAATACTACTCTCGCTCAAA 60.016 42.308 0.00 0.00 0.00 2.69
42 43 5.473846 CCATCCTAATACTACTCTCGCTCAA 59.526 44.000 0.00 0.00 0.00 3.02
43 44 5.004448 CCATCCTAATACTACTCTCGCTCA 58.996 45.833 0.00 0.00 0.00 4.26
44 45 4.396790 CCCATCCTAATACTACTCTCGCTC 59.603 50.000 0.00 0.00 0.00 5.03
45 46 4.202588 ACCCATCCTAATACTACTCTCGCT 60.203 45.833 0.00 0.00 0.00 4.93
46 47 4.080687 ACCCATCCTAATACTACTCTCGC 58.919 47.826 0.00 0.00 0.00 5.03
47 48 5.181622 GTCACCCATCCTAATACTACTCTCG 59.818 48.000 0.00 0.00 0.00 4.04
48 49 5.477637 GGTCACCCATCCTAATACTACTCTC 59.522 48.000 0.00 0.00 0.00 3.20
49 50 5.136392 AGGTCACCCATCCTAATACTACTCT 59.864 44.000 0.00 0.00 31.66 3.24
50 51 5.395611 AGGTCACCCATCCTAATACTACTC 58.604 45.833 0.00 0.00 31.66 2.59
51 52 5.420215 AGGTCACCCATCCTAATACTACT 57.580 43.478 0.00 0.00 31.66 2.57
52 53 5.839606 AGAAGGTCACCCATCCTAATACTAC 59.160 44.000 0.00 0.00 33.27 2.73
53 54 5.839063 CAGAAGGTCACCCATCCTAATACTA 59.161 44.000 0.00 0.00 33.27 1.82
54 55 4.656112 CAGAAGGTCACCCATCCTAATACT 59.344 45.833 0.00 0.00 33.27 2.12
55 56 4.202367 CCAGAAGGTCACCCATCCTAATAC 60.202 50.000 0.00 0.00 33.27 1.89
56 57 3.973973 CCAGAAGGTCACCCATCCTAATA 59.026 47.826 0.00 0.00 33.27 0.98
57 58 2.780010 CCAGAAGGTCACCCATCCTAAT 59.220 50.000 0.00 0.00 33.27 1.73
58 59 2.196595 CCAGAAGGTCACCCATCCTAA 58.803 52.381 0.00 0.00 33.27 2.69
59 60 1.879575 CCAGAAGGTCACCCATCCTA 58.120 55.000 0.00 0.00 33.27 2.94
60 61 1.566298 GCCAGAAGGTCACCCATCCT 61.566 60.000 0.00 0.00 37.19 3.24
61 62 1.077429 GCCAGAAGGTCACCCATCC 60.077 63.158 0.00 0.00 37.19 3.51
62 63 0.107459 GAGCCAGAAGGTCACCCATC 60.107 60.000 0.00 0.00 42.81 3.51
63 64 1.566298 GGAGCCAGAAGGTCACCCAT 61.566 60.000 0.00 0.00 45.21 4.00
64 65 2.224159 GGAGCCAGAAGGTCACCCA 61.224 63.158 0.00 0.00 45.21 4.51
65 66 1.920835 AGGAGCCAGAAGGTCACCC 60.921 63.158 0.00 0.00 45.21 4.61
66 67 1.194781 TCAGGAGCCAGAAGGTCACC 61.195 60.000 0.00 0.00 45.21 4.02
67 68 0.687354 TTCAGGAGCCAGAAGGTCAC 59.313 55.000 0.00 0.00 45.21 3.67
68 69 1.434188 TTTCAGGAGCCAGAAGGTCA 58.566 50.000 0.00 0.00 45.21 4.02
69 70 2.431454 CTTTTCAGGAGCCAGAAGGTC 58.569 52.381 0.00 0.00 42.55 3.85
70 71 1.546548 GCTTTTCAGGAGCCAGAAGGT 60.547 52.381 0.00 0.00 37.19 3.50
71 72 1.172175 GCTTTTCAGGAGCCAGAAGG 58.828 55.000 0.00 0.00 34.06 3.46
78 79 1.003233 ACGAGGGCTTTTCAGGAGC 60.003 57.895 0.00 0.00 39.41 4.70
79 80 0.321671 TCACGAGGGCTTTTCAGGAG 59.678 55.000 0.00 0.00 0.00 3.69
80 81 0.762418 TTCACGAGGGCTTTTCAGGA 59.238 50.000 0.00 0.00 0.00 3.86
81 82 1.604604 TTTCACGAGGGCTTTTCAGG 58.395 50.000 0.00 0.00 0.00 3.86
82 83 2.095059 CCATTTCACGAGGGCTTTTCAG 60.095 50.000 0.00 0.00 0.00 3.02
83 84 1.885887 CCATTTCACGAGGGCTTTTCA 59.114 47.619 0.00 0.00 0.00 2.69
84 85 1.886542 ACCATTTCACGAGGGCTTTTC 59.113 47.619 0.00 0.00 0.00 2.29
85 86 1.995376 ACCATTTCACGAGGGCTTTT 58.005 45.000 0.00 0.00 0.00 2.27
86 87 1.995376 AACCATTTCACGAGGGCTTT 58.005 45.000 0.00 0.00 0.00 3.51
87 88 1.886542 GAAACCATTTCACGAGGGCTT 59.113 47.619 0.00 0.00 39.45 4.35
88 89 1.202879 TGAAACCATTTCACGAGGGCT 60.203 47.619 0.00 0.00 44.21 5.19
89 90 1.243902 TGAAACCATTTCACGAGGGC 58.756 50.000 0.00 0.00 44.21 5.19
101 102 9.647918 AGTTGAGATAGTCTAGATATGAAACCA 57.352 33.333 0.00 0.00 0.00 3.67
109 110 9.688091 ACAAGTTGAGTTGAGATAGTCTAGATA 57.312 33.333 10.54 0.00 0.00 1.98
110 111 8.588290 ACAAGTTGAGTTGAGATAGTCTAGAT 57.412 34.615 10.54 0.00 0.00 1.98
111 112 8.410673 AACAAGTTGAGTTGAGATAGTCTAGA 57.589 34.615 10.54 0.00 0.00 2.43
112 113 8.920665 CAAACAAGTTGAGTTGAGATAGTCTAG 58.079 37.037 10.54 0.00 39.87 2.43
113 114 7.872993 CCAAACAAGTTGAGTTGAGATAGTCTA 59.127 37.037 19.17 0.00 39.87 2.59
114 115 6.708054 CCAAACAAGTTGAGTTGAGATAGTCT 59.292 38.462 19.17 0.00 39.87 3.24
115 116 6.706270 TCCAAACAAGTTGAGTTGAGATAGTC 59.294 38.462 19.17 0.00 39.87 2.59
116 117 6.591935 TCCAAACAAGTTGAGTTGAGATAGT 58.408 36.000 19.17 0.00 39.87 2.12
117 118 7.012327 TGTTCCAAACAAGTTGAGTTGAGATAG 59.988 37.037 19.17 7.69 39.87 2.08
118 119 6.826231 TGTTCCAAACAAGTTGAGTTGAGATA 59.174 34.615 19.17 7.97 39.87 1.98
119 120 5.652014 TGTTCCAAACAAGTTGAGTTGAGAT 59.348 36.000 19.17 0.00 39.87 2.75
120 121 5.007034 TGTTCCAAACAAGTTGAGTTGAGA 58.993 37.500 19.17 13.73 39.87 3.27
121 122 5.309323 TGTTCCAAACAAGTTGAGTTGAG 57.691 39.130 19.17 12.31 39.87 3.02
122 123 5.713792 TTGTTCCAAACAAGTTGAGTTGA 57.286 34.783 19.17 5.95 45.79 3.18
128 129 8.468381 ACGAAGTCTTTTGTTCCAAACAAGTTG 61.468 37.037 0.00 0.00 45.90 3.16
129 130 6.516028 ACGAAGTCTTTTGTTCCAAACAAGTT 60.516 34.615 5.50 0.00 45.90 2.66
130 131 5.048294 ACGAAGTCTTTTGTTCCAAACAAGT 60.048 36.000 5.50 0.00 45.90 3.16
131 132 5.399013 ACGAAGTCTTTTGTTCCAAACAAG 58.601 37.500 5.50 0.00 45.90 3.16
132 133 5.379732 ACGAAGTCTTTTGTTCCAAACAA 57.620 34.783 1.27 1.27 44.17 2.83
133 134 6.149807 ACTTACGAAGTCTTTTGTTCCAAACA 59.850 34.615 0.00 0.00 43.93 2.83
134 135 6.468000 CACTTACGAAGTCTTTTGTTCCAAAC 59.532 38.462 0.00 0.00 43.93 2.93
135 136 6.372103 TCACTTACGAAGTCTTTTGTTCCAAA 59.628 34.615 0.00 0.00 43.93 3.28
136 137 5.875910 TCACTTACGAAGTCTTTTGTTCCAA 59.124 36.000 0.00 0.00 43.93 3.53
137 138 5.421277 TCACTTACGAAGTCTTTTGTTCCA 58.579 37.500 0.00 0.00 43.93 3.53
138 139 5.978934 TCACTTACGAAGTCTTTTGTTCC 57.021 39.130 0.00 0.00 43.93 3.62
139 140 6.018180 ACCATCACTTACGAAGTCTTTTGTTC 60.018 38.462 0.00 0.00 43.93 3.18
140 141 5.820947 ACCATCACTTACGAAGTCTTTTGTT 59.179 36.000 0.00 0.00 43.93 2.83
141 142 5.365619 ACCATCACTTACGAAGTCTTTTGT 58.634 37.500 0.00 0.00 43.93 2.83
142 143 5.924475 ACCATCACTTACGAAGTCTTTTG 57.076 39.130 0.00 0.00 43.93 2.44
143 144 7.170998 CACTTACCATCACTTACGAAGTCTTTT 59.829 37.037 0.00 0.00 43.93 2.27
144 145 6.645415 CACTTACCATCACTTACGAAGTCTTT 59.355 38.462 0.00 0.00 43.93 2.52
145 146 6.015688 TCACTTACCATCACTTACGAAGTCTT 60.016 38.462 0.00 0.00 43.93 3.01
146 147 5.475909 TCACTTACCATCACTTACGAAGTCT 59.524 40.000 0.00 0.00 43.93 3.24
147 148 5.706916 TCACTTACCATCACTTACGAAGTC 58.293 41.667 0.00 0.00 43.93 3.01
149 150 5.573282 CACTCACTTACCATCACTTACGAAG 59.427 44.000 0.00 0.00 0.00 3.79
150 151 5.242171 TCACTCACTTACCATCACTTACGAA 59.758 40.000 0.00 0.00 0.00 3.85
151 152 4.763279 TCACTCACTTACCATCACTTACGA 59.237 41.667 0.00 0.00 0.00 3.43
152 153 5.055642 TCACTCACTTACCATCACTTACG 57.944 43.478 0.00 0.00 0.00 3.18
153 154 7.097192 TGAATCACTCACTTACCATCACTTAC 58.903 38.462 0.00 0.00 0.00 2.34
154 155 7.239763 TGAATCACTCACTTACCATCACTTA 57.760 36.000 0.00 0.00 0.00 2.24
155 156 6.114187 TGAATCACTCACTTACCATCACTT 57.886 37.500 0.00 0.00 0.00 3.16
156 157 5.745312 TGAATCACTCACTTACCATCACT 57.255 39.130 0.00 0.00 0.00 3.41
157 158 5.233050 CGATGAATCACTCACTTACCATCAC 59.767 44.000 0.00 0.00 36.69 3.06
158 159 5.105351 ACGATGAATCACTCACTTACCATCA 60.105 40.000 0.00 0.00 36.69 3.07
159 160 5.233050 CACGATGAATCACTCACTTACCATC 59.767 44.000 0.00 0.00 36.69 3.51
160 161 5.111989 CACGATGAATCACTCACTTACCAT 58.888 41.667 0.00 0.00 36.69 3.55
161 162 4.494484 CACGATGAATCACTCACTTACCA 58.506 43.478 0.00 0.00 36.69 3.25
162 163 3.865745 CCACGATGAATCACTCACTTACC 59.134 47.826 0.00 0.00 36.69 2.85
163 164 4.744570 TCCACGATGAATCACTCACTTAC 58.255 43.478 0.00 0.00 36.69 2.34
164 165 5.400066 TTCCACGATGAATCACTCACTTA 57.600 39.130 0.00 0.00 36.69 2.24
165 166 3.961480 TCCACGATGAATCACTCACTT 57.039 42.857 0.00 0.00 36.69 3.16
166 167 3.961480 TTCCACGATGAATCACTCACT 57.039 42.857 0.00 0.00 36.69 3.41
167 168 5.147162 GTTTTTCCACGATGAATCACTCAC 58.853 41.667 0.00 0.00 36.69 3.51
168 169 4.819088 TGTTTTTCCACGATGAATCACTCA 59.181 37.500 0.00 0.00 38.81 3.41
169 170 5.179368 TCTGTTTTTCCACGATGAATCACTC 59.821 40.000 0.00 0.00 0.00 3.51
170 171 5.063204 TCTGTTTTTCCACGATGAATCACT 58.937 37.500 0.00 0.00 0.00 3.41
171 172 5.356882 TCTGTTTTTCCACGATGAATCAC 57.643 39.130 0.00 0.00 0.00 3.06
172 173 6.384258 TTTCTGTTTTTCCACGATGAATCA 57.616 33.333 0.00 0.00 0.00 2.57
173 174 7.873739 ATTTTCTGTTTTTCCACGATGAATC 57.126 32.000 0.00 0.00 0.00 2.52
203 204 7.505258 AGGTTTGCTTGCTTTTCCTTTATTAA 58.495 30.769 0.00 0.00 0.00 1.40
204 205 7.061566 AGGTTTGCTTGCTTTTCCTTTATTA 57.938 32.000 0.00 0.00 0.00 0.98
205 206 5.928976 AGGTTTGCTTGCTTTTCCTTTATT 58.071 33.333 0.00 0.00 0.00 1.40
206 207 5.551305 AGGTTTGCTTGCTTTTCCTTTAT 57.449 34.783 0.00 0.00 0.00 1.40
207 208 6.569610 CGATAGGTTTGCTTGCTTTTCCTTTA 60.570 38.462 0.00 0.00 0.00 1.85
210 211 3.191371 CGATAGGTTTGCTTGCTTTTCCT 59.809 43.478 0.00 0.00 0.00 3.36
228 229 0.397187 CGGAGAGAGGGGTCTCGATA 59.603 60.000 0.00 0.00 43.54 2.92
233 234 0.106419 GATGACGGAGAGAGGGGTCT 60.106 60.000 0.00 0.00 0.00 3.85
234 235 0.106419 AGATGACGGAGAGAGGGGTC 60.106 60.000 0.00 0.00 0.00 4.46
236 237 1.410882 GAAAGATGACGGAGAGAGGGG 59.589 57.143 0.00 0.00 0.00 4.79
275 278 3.157087 GTGGGGTCAATTTGTCAGTGAT 58.843 45.455 0.00 0.00 0.00 3.06
285 288 0.698818 GGGAGAGTGTGGGGTCAATT 59.301 55.000 0.00 0.00 0.00 2.32
317 320 1.324383 GGGTGGAAAAAGGAAAGCGA 58.676 50.000 0.00 0.00 0.00 4.93
326 329 0.676736 GTCAATGCGGGGTGGAAAAA 59.323 50.000 0.00 0.00 0.00 1.94
355 359 1.344953 CCGGTGATCAGGGGGAATGA 61.345 60.000 0.00 0.00 0.00 2.57
361 365 4.489771 GTGGCCGGTGATCAGGGG 62.490 72.222 13.24 10.46 0.00 4.79
406 420 0.542333 GGAGGTAGAAGGGTGGAAGC 59.458 60.000 0.00 0.00 0.00 3.86
408 422 1.273666 GGAGGAGGTAGAAGGGTGGAA 60.274 57.143 0.00 0.00 0.00 3.53
428 442 1.139947 GGAGGAAGAAGGCGACGAG 59.860 63.158 0.00 0.00 0.00 4.18
429 443 1.304217 AGGAGGAAGAAGGCGACGA 60.304 57.895 0.00 0.00 0.00 4.20
435 449 0.692756 GAGGGGGAGGAGGAAGAAGG 60.693 65.000 0.00 0.00 0.00 3.46
481 495 2.345760 GGAGAAGGCGACGGTGGTA 61.346 63.158 0.00 0.00 0.00 3.25
619 633 2.291043 GGAGAAGGAGGCGTTGGGA 61.291 63.158 0.00 0.00 0.00 4.37
809 823 3.195698 GTTCCCGCCGATGTGCTC 61.196 66.667 0.00 0.00 0.00 4.26
853 867 2.430382 GAACCGACCTCTCGTTGCCA 62.430 60.000 0.00 0.00 38.32 4.92
860 874 2.210341 GACCCACGAACCGACCTCTC 62.210 65.000 0.00 0.00 0.00 3.20
861 875 2.203596 ACCCACGAACCGACCTCT 60.204 61.111 0.00 0.00 0.00 3.69
898 912 2.435059 GAACACCTCCAGGCGAGC 60.435 66.667 0.00 0.00 37.27 5.03
1025 1039 1.957562 CTCCTGTTGTCGGACGAGT 59.042 57.895 3.34 0.00 0.00 4.18
1169 1183 2.573609 ATCCTTACGGCTGGCGACAC 62.574 60.000 30.58 0.00 35.60 3.67
1199 1219 3.070576 GCCCCATCGCAAGCCTTT 61.071 61.111 0.00 0.00 37.18 3.11
1209 1229 2.595754 GGAATGCCGAGCCCCATC 60.596 66.667 0.00 0.00 0.00 3.51
1228 1248 1.336887 ACCGAGAAACACGATGGACAG 60.337 52.381 0.00 0.00 0.00 3.51
1231 1251 0.669318 GCACCGAGAAACACGATGGA 60.669 55.000 0.00 0.00 0.00 3.41
1815 1835 1.617018 GCCCAAAATCCCCCAGCTTC 61.617 60.000 0.00 0.00 0.00 3.86
1819 1839 1.902765 GCAAGCCCAAAATCCCCCAG 61.903 60.000 0.00 0.00 0.00 4.45
1869 1889 1.065126 GTCCCTGCTGCTAAGGTTGAT 60.065 52.381 0.00 0.00 32.45 2.57
1944 1964 2.330216 ACCCCATAGCTGTAGACATCC 58.670 52.381 0.00 0.00 0.00 3.51
2212 2232 1.376553 GCTCACTCTTGCCCTCCAC 60.377 63.158 0.00 0.00 0.00 4.02
2233 2253 2.223711 GCTTCTTTTTCGGAACAGGCAA 60.224 45.455 0.00 0.00 0.00 4.52
2467 2487 7.336931 AGTTGTTCGCATAATTTGGACTAGAAT 59.663 33.333 0.00 0.00 0.00 2.40
2501 2521 8.668510 AGCGTCATTCAAATTCAATAGACTAT 57.331 30.769 0.00 0.00 0.00 2.12
2548 2568 9.938280 ACAATACTAACTGACAAGCTAAACATA 57.062 29.630 0.00 0.00 0.00 2.29
2673 2837 0.751277 TGAGGTGGTGTTGGTGCAAG 60.751 55.000 0.00 0.00 0.00 4.01
2687 2851 0.176680 CCGCTCTGCTGTAATGAGGT 59.823 55.000 0.00 0.00 0.00 3.85
2693 2857 0.173481 CAGCTACCGCTCTGCTGTAA 59.827 55.000 6.09 0.00 45.15 2.41
2723 2887 3.314553 CAAGGCAAAGATCAAAGCACTG 58.685 45.455 0.00 0.00 0.00 3.66
2986 3150 3.244875 TGCAGTGGGATAGTGTCAACATT 60.245 43.478 0.00 0.00 32.06 2.71
3042 3206 3.991367 GTTCTCCCTGAAAGAACTCGAA 58.009 45.455 8.39 0.00 45.89 3.71
3073 3237 0.598562 GAGTTCAGCACGACCTCTGA 59.401 55.000 0.00 0.00 37.54 3.27
3080 3244 1.299850 CCACACGAGTTCAGCACGA 60.300 57.895 0.00 0.00 35.23 4.35
3216 3380 1.808945 CCCTTTGTACAGAGCTGCAAG 59.191 52.381 7.89 1.41 0.00 4.01
3273 3437 4.592942 TGACCCATAAGACGTACTGTAGT 58.407 43.478 0.00 0.00 0.00 2.73
3276 3440 4.877378 TTTGACCCATAAGACGTACTGT 57.123 40.909 0.00 0.00 0.00 3.55
3294 3561 7.303634 AGTACGTGGTATAAGCATCTTTTTG 57.696 36.000 0.00 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.