Multiple sequence alignment - TraesCS5B01G165200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G165200 chr5B 100.000 4334 0 0 1 4334 305598028 305593695 0.000000e+00 8004.0
1 TraesCS5B01G165200 chr5B 100.000 3039 0 0 4593 7631 305593436 305590398 0.000000e+00 5613.0
2 TraesCS5B01G165200 chr5B 88.559 236 20 2 7402 7630 97515422 97515187 5.830000e-71 279.0
3 TraesCS5B01G165200 chr5B 88.333 120 14 0 7280 7399 97515511 97515392 2.220000e-30 145.0
4 TraesCS5B01G165200 chr5A 96.194 3389 83 14 365 3713 358491902 358488520 0.000000e+00 5502.0
5 TraesCS5B01G165200 chr5A 95.659 1912 69 7 5325 7225 358486709 358484801 0.000000e+00 3059.0
6 TraesCS5B01G165200 chr5A 92.918 819 18 5 4593 5393 358487549 358486753 0.000000e+00 1155.0
7 TraesCS5B01G165200 chr5A 94.207 397 20 3 3941 4334 358487935 358487539 3.050000e-168 603.0
8 TraesCS5B01G165200 chr5A 87.262 526 18 6 1510 2010 487696828 487696327 8.650000e-154 555.0
9 TraesCS5B01G165200 chr5A 98.253 229 4 0 3821 4049 358488156 358487928 1.190000e-107 401.0
10 TraesCS5B01G165200 chr5A 95.283 212 9 1 3 213 358492103 358491892 1.230000e-87 335.0
11 TraesCS5B01G165200 chr5A 92.405 237 13 2 7400 7631 358484708 358484472 4.410000e-87 333.0
12 TraesCS5B01G165200 chr5A 89.407 236 18 2 7402 7630 85857551 85857316 2.690000e-74 291.0
13 TraesCS5B01G165200 chr5A 87.879 132 16 0 7268 7399 358484807 358484676 1.030000e-33 156.0
14 TraesCS5B01G165200 chr5A 92.857 98 6 1 3706 3803 358488309 358488213 2.870000e-29 141.0
15 TraesCS5B01G165200 chr5A 84.677 124 18 1 5602 5724 295076398 295076275 1.040000e-23 122.0
16 TraesCS5B01G165200 chr5A 97.101 69 2 0 5325 5393 358486765 358486697 4.840000e-22 117.0
17 TraesCS5B01G165200 chr5A 89.286 56 1 3 1596 1651 29677650 29677700 1.780000e-06 65.8
18 TraesCS5B01G165200 chr5D 96.216 3277 66 16 365 3604 269741963 269738708 0.000000e+00 5312.0
19 TraesCS5B01G165200 chr5D 96.319 2445 79 9 4597 7040 269737587 269735153 0.000000e+00 4006.0
20 TraesCS5B01G165200 chr5D 97.410 502 10 3 3706 4206 269738417 269737918 0.000000e+00 852.0
21 TraesCS5B01G165200 chr5D 95.755 212 8 1 3 213 269742164 269741953 2.640000e-89 340.0
22 TraesCS5B01G165200 chr5D 92.405 237 12 3 7400 7631 269728218 269727983 4.410000e-87 333.0
23 TraesCS5B01G165200 chr5D 87.917 240 17 8 7402 7630 92172827 92172589 9.760000e-69 272.0
24 TraesCS5B01G165200 chr5D 87.288 236 23 5 7402 7630 370943487 370943722 5.870000e-66 263.0
25 TraesCS5B01G165200 chr5D 86.124 209 12 4 7031 7225 269730457 269730252 7.760000e-50 209.0
26 TraesCS5B01G165200 chr5D 85.455 165 11 5 211 363 214642160 214641997 7.930000e-35 159.0
27 TraesCS5B01G165200 chr5D 88.333 120 14 0 7280 7399 92172916 92172797 2.220000e-30 145.0
28 TraesCS5B01G165200 chr5D 83.594 128 21 0 5597 5724 369318345 369318218 3.740000e-23 121.0
29 TraesCS5B01G165200 chr5D 95.833 72 2 1 7328 7399 269728257 269728187 1.740000e-21 115.0
30 TraesCS5B01G165200 chr5D 93.506 77 4 1 3637 3713 269738702 269738627 6.260000e-21 113.0
31 TraesCS5B01G165200 chr5D 82.836 134 15 4 5578 5705 375306175 375306044 6.260000e-21 113.0
32 TraesCS5B01G165200 chr5D 77.778 153 25 6 5578 5724 241957041 241957190 1.360000e-12 86.1
33 TraesCS5B01G165200 chr5D 82.716 81 14 0 5625 5705 250054334 250054414 1.060000e-08 73.1
34 TraesCS5B01G165200 chr2B 87.931 232 21 2 7402 7626 394305688 394305457 4.540000e-67 267.0
35 TraesCS5B01G165200 chr2B 85.882 170 10 5 211 366 336857627 336857796 1.320000e-37 169.0
36 TraesCS5B01G165200 chr6B 89.573 211 15 4 7402 7605 436732286 436732496 2.110000e-65 261.0
37 TraesCS5B01G165200 chr6B 85.380 171 10 6 211 366 375723705 375723535 6.130000e-36 163.0
38 TraesCS5B01G165200 chr6B 86.667 120 14 2 7282 7399 36145999 36146118 1.730000e-26 132.0
39 TraesCS5B01G165200 chr3B 87.234 235 23 5 7402 7629 766802154 766801920 2.110000e-65 261.0
40 TraesCS5B01G165200 chr6A 86.864 236 24 5 7402 7630 539182529 539182764 2.730000e-64 257.0
41 TraesCS5B01G165200 chr6A 82.781 151 19 3 5579 5724 47486721 47486869 2.240000e-25 128.0
42 TraesCS5B01G165200 chr6A 85.000 60 5 3 1597 1652 158049122 158049181 2.970000e-04 58.4
43 TraesCS5B01G165200 chr7D 87.892 223 20 7 7413 7630 586743223 586743443 9.830000e-64 255.0
44 TraesCS5B01G165200 chr7D 84.322 236 29 5 7402 7629 365254420 365254655 2.770000e-54 224.0
45 TraesCS5B01G165200 chr7D 82.692 156 20 2 5578 5726 483277049 483276894 1.730000e-26 132.0
46 TraesCS5B01G165200 chr7D 85.366 123 18 0 5602 5724 34373348 34373470 2.240000e-25 128.0
47 TraesCS5B01G165200 chr7A 86.555 238 23 6 7402 7631 403084064 403084300 3.530000e-63 254.0
48 TraesCS5B01G165200 chr7A 86.179 123 17 0 5602 5724 421785036 421785158 4.800000e-27 134.0
49 TraesCS5B01G165200 chr7A 76.048 167 19 11 7062 7225 403083812 403083960 4.940000e-07 67.6
50 TraesCS5B01G165200 chr7A 85.965 57 4 3 1596 1652 646982941 646982993 2.970000e-04 58.4
51 TraesCS5B01G165200 chr1D 79.503 322 43 11 1868 2169 415460477 415460159 2.790000e-49 207.0
52 TraesCS5B01G165200 chr1D 89.474 114 10 2 5615 5727 314013644 314013532 7.980000e-30 143.0
53 TraesCS5B01G165200 chr1D 83.051 118 16 3 5604 5720 203750034 203749920 3.770000e-18 104.0
54 TraesCS5B01G165200 chr1D 80.282 142 23 5 5589 5727 258333079 258333218 1.350000e-17 102.0
55 TraesCS5B01G165200 chr1D 92.308 65 3 1 299 361 463283735 463283671 2.930000e-14 91.6
56 TraesCS5B01G165200 chr2D 90.260 154 10 3 216 365 106123456 106123304 6.040000e-46 196.0
57 TraesCS5B01G165200 chr2D 84.553 123 18 1 5602 5724 163017804 163017683 3.740000e-23 121.0
58 TraesCS5B01G165200 chr1A 78.462 325 45 15 1868 2169 513263816 513263494 1.010000e-43 189.0
59 TraesCS5B01G165200 chr1A 83.230 161 14 9 212 366 455047523 455047676 1.340000e-27 135.0
60 TraesCS5B01G165200 chr1A 84.746 118 17 1 5607 5724 357769406 357769290 4.840000e-22 117.0
61 TraesCS5B01G165200 chr3D 87.975 158 11 3 211 363 565410187 565410033 6.080000e-41 180.0
62 TraesCS5B01G165200 chr4D 87.273 165 9 6 211 363 295434015 295434179 2.190000e-40 178.0
63 TraesCS5B01G165200 chr4D 83.041 171 10 9 215 366 468898216 468898046 3.710000e-28 137.0
64 TraesCS5B01G165200 chr4B 84.177 158 13 5 215 363 106487155 106487309 7.980000e-30 143.0
65 TraesCS5B01G165200 chr4B 86.508 126 17 0 5602 5727 3287518 3287393 1.030000e-28 139.0
66 TraesCS5B01G165200 chrUn 82.105 190 10 8 202 367 108762895 108763084 2.870000e-29 141.0
67 TraesCS5B01G165200 chr7B 82.692 156 20 2 5578 5726 508824600 508824445 1.730000e-26 132.0
68 TraesCS5B01G165200 chr7B 81.915 94 14 2 7134 7225 321434097 321434005 8.210000e-10 76.8
69 TraesCS5B01G165200 chr7B 81.915 94 14 2 7134 7225 321447681 321447589 8.210000e-10 76.8
70 TraesCS5B01G165200 chr1B 81.935 155 23 2 5578 5727 268400017 268400171 8.040000e-25 126.0
71 TraesCS5B01G165200 chr1B 84.211 133 18 3 5597 5727 354929417 354929286 8.040000e-25 126.0
72 TraesCS5B01G165200 chr1B 88.136 59 2 3 1596 1652 668960739 668960684 1.780000e-06 65.8
73 TraesCS5B01G165200 chr1B 85.246 61 5 3 1596 1652 237010349 237010409 8.270000e-05 60.2
74 TraesCS5B01G165200 chr4A 87.719 57 3 3 1596 1652 524312630 524312578 6.390000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G165200 chr5B 305590398 305598028 7630 True 6808.5 8004 100.0000 1 7631 2 chr5B.!!$R2 7630
1 TraesCS5B01G165200 chr5A 358484472 358492103 7631 True 1180.2 5502 94.2756 3 7631 10 chr5A.!!$R4 7628
2 TraesCS5B01G165200 chr5A 487696327 487696828 501 True 555.0 555 87.2620 1510 2010 1 chr5A.!!$R3 500
3 TraesCS5B01G165200 chr5D 269735153 269742164 7011 True 2124.6 5312 95.8412 3 7040 5 chr5D.!!$R6 7037
4 TraesCS5B01G165200 chr5D 269727983 269730457 2474 True 219.0 333 91.4540 7031 7631 3 chr5D.!!$R5 600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
887 917 0.027194 CTCTTGCCGTTGATCATGCG 59.973 55.000 11.72 11.72 0.00 4.73 F
2327 2386 4.095782 GGTAGCGCATGTTCCTAATTTTCA 59.904 41.667 11.47 0.00 0.00 2.69 F
3331 3403 1.226491 GCACATTCTGCCATGCGTC 60.226 57.895 0.00 0.00 40.42 5.19 F
4926 5360 0.617820 ATAGGCACTGGAGGGTTCGT 60.618 55.000 0.00 0.00 41.52 3.85 F
4935 5369 1.087501 GGAGGGTTCGTCTTGCAATC 58.912 55.000 0.00 0.00 0.00 2.67 F
5942 6506 0.890996 GCACTAAAGCCAGCACACCT 60.891 55.000 0.00 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2635 2698 4.278419 TCAATGTCTCAAGTTCTCGACTCA 59.722 41.667 0.00 0.00 37.72 3.41 R
4223 4656 1.603802 CGTATTTTGGCGCCAGATGAT 59.396 47.619 30.75 22.06 0.00 2.45 R
5084 5518 1.146263 ACATTGCCTAGCCGTAGCC 59.854 57.895 0.00 0.00 41.25 3.93 R
5942 6506 0.034767 AAGATGCCTGCTTAGCTGCA 60.035 50.000 20.16 20.16 40.03 4.41 R
6507 7071 0.600557 CAGTCTTCTCAGCGACCTGT 59.399 55.000 0.00 0.00 40.09 4.00 R
7266 7846 0.168128 GCGCGGCAGTTTTACATCTT 59.832 50.000 8.83 0.00 0.00 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 53 1.414919 ACGACTTGCTTTGGTCCACTA 59.585 47.619 0.00 0.00 0.00 2.74
182 184 7.039363 CCCCTGAAACCATTTGTAGACAATAAA 60.039 37.037 0.00 0.00 35.55 1.40
201 203 9.715121 ACAATAAATTGCATCTTTCTTTGTCAT 57.285 25.926 2.60 0.00 41.38 3.06
205 207 7.429636 AATTGCATCTTTCTTTGTCATTTGG 57.570 32.000 0.00 0.00 0.00 3.28
206 208 4.885413 TGCATCTTTCTTTGTCATTTGGG 58.115 39.130 0.00 0.00 0.00 4.12
207 209 4.248058 GCATCTTTCTTTGTCATTTGGGG 58.752 43.478 0.00 0.00 0.00 4.96
208 210 4.021192 GCATCTTTCTTTGTCATTTGGGGA 60.021 41.667 0.00 0.00 0.00 4.81
209 211 5.511202 GCATCTTTCTTTGTCATTTGGGGAA 60.511 40.000 0.00 0.00 0.00 3.97
210 212 5.789643 TCTTTCTTTGTCATTTGGGGAAG 57.210 39.130 0.00 0.00 0.00 3.46
211 213 4.588528 TCTTTCTTTGTCATTTGGGGAAGG 59.411 41.667 0.00 0.00 0.00 3.46
212 214 3.611025 TCTTTGTCATTTGGGGAAGGT 57.389 42.857 0.00 0.00 0.00 3.50
213 215 4.733077 TCTTTGTCATTTGGGGAAGGTA 57.267 40.909 0.00 0.00 0.00 3.08
214 216 5.269554 TCTTTGTCATTTGGGGAAGGTAT 57.730 39.130 0.00 0.00 0.00 2.73
215 217 5.016173 TCTTTGTCATTTGGGGAAGGTATG 58.984 41.667 0.00 0.00 0.00 2.39
216 218 4.396357 TTGTCATTTGGGGAAGGTATGT 57.604 40.909 0.00 0.00 0.00 2.29
217 219 3.963129 TGTCATTTGGGGAAGGTATGTC 58.037 45.455 0.00 0.00 0.00 3.06
218 220 3.591527 TGTCATTTGGGGAAGGTATGTCT 59.408 43.478 0.00 0.00 0.00 3.41
219 221 4.785914 TGTCATTTGGGGAAGGTATGTCTA 59.214 41.667 0.00 0.00 0.00 2.59
220 222 5.104527 TGTCATTTGGGGAAGGTATGTCTAG 60.105 44.000 0.00 0.00 0.00 2.43
221 223 4.412199 TCATTTGGGGAAGGTATGTCTAGG 59.588 45.833 0.00 0.00 0.00 3.02
222 224 3.788116 TTGGGGAAGGTATGTCTAGGA 57.212 47.619 0.00 0.00 0.00 2.94
223 225 3.042059 TGGGGAAGGTATGTCTAGGAC 57.958 52.381 0.00 0.00 0.00 3.85
224 226 2.316677 TGGGGAAGGTATGTCTAGGACA 59.683 50.000 2.80 2.80 46.90 4.02
225 227 2.699321 GGGGAAGGTATGTCTAGGACAC 59.301 54.545 2.34 0.00 45.65 3.67
226 228 3.371965 GGGAAGGTATGTCTAGGACACA 58.628 50.000 2.34 0.00 45.65 3.72
227 229 3.967987 GGGAAGGTATGTCTAGGACACAT 59.032 47.826 2.34 1.62 45.65 3.21
228 230 4.039366 GGGAAGGTATGTCTAGGACACATC 59.961 50.000 2.34 0.00 45.65 3.06
229 231 4.896482 GGAAGGTATGTCTAGGACACATCT 59.104 45.833 2.34 0.00 45.65 2.90
230 232 6.069331 GGAAGGTATGTCTAGGACACATCTA 58.931 44.000 2.34 0.00 45.65 1.98
231 233 6.207810 GGAAGGTATGTCTAGGACACATCTAG 59.792 46.154 2.34 0.00 45.65 2.43
232 234 6.517013 AGGTATGTCTAGGACACATCTAGA 57.483 41.667 2.34 0.00 45.65 2.43
233 235 7.097623 AGGTATGTCTAGGACACATCTAGAT 57.902 40.000 0.00 0.00 45.65 1.98
234 236 6.945435 AGGTATGTCTAGGACACATCTAGATG 59.055 42.308 27.63 27.63 45.65 2.90
251 253 8.976471 CATCTAGATGTGACATAAACTAAGCTG 58.024 37.037 22.42 0.00 34.23 4.24
252 254 8.293699 TCTAGATGTGACATAAACTAAGCTGA 57.706 34.615 0.00 0.00 0.00 4.26
253 255 8.918116 TCTAGATGTGACATAAACTAAGCTGAT 58.082 33.333 0.00 0.00 0.00 2.90
254 256 7.783090 AGATGTGACATAAACTAAGCTGATG 57.217 36.000 0.00 0.00 0.00 3.07
255 257 7.334090 AGATGTGACATAAACTAAGCTGATGT 58.666 34.615 0.00 0.00 33.52 3.06
256 258 6.968131 TGTGACATAAACTAAGCTGATGTC 57.032 37.500 6.40 6.40 44.29 3.06
257 259 5.874810 TGTGACATAAACTAAGCTGATGTCC 59.125 40.000 10.01 3.84 43.70 4.02
258 260 5.874810 GTGACATAAACTAAGCTGATGTCCA 59.125 40.000 10.01 0.00 43.70 4.02
259 261 5.874810 TGACATAAACTAAGCTGATGTCCAC 59.125 40.000 10.01 0.00 43.70 4.02
260 262 6.054860 ACATAAACTAAGCTGATGTCCACT 57.945 37.500 0.00 0.00 0.00 4.00
261 263 6.109359 ACATAAACTAAGCTGATGTCCACTC 58.891 40.000 0.00 0.00 0.00 3.51
262 264 4.899352 AAACTAAGCTGATGTCCACTCT 57.101 40.909 0.00 0.00 0.00 3.24
263 265 3.883830 ACTAAGCTGATGTCCACTCTG 57.116 47.619 0.00 0.00 0.00 3.35
264 266 3.169099 ACTAAGCTGATGTCCACTCTGT 58.831 45.455 0.00 0.00 0.00 3.41
265 267 3.580458 ACTAAGCTGATGTCCACTCTGTT 59.420 43.478 0.00 0.00 0.00 3.16
266 268 3.498774 AAGCTGATGTCCACTCTGTTT 57.501 42.857 0.00 0.00 0.00 2.83
267 269 2.775890 AGCTGATGTCCACTCTGTTTG 58.224 47.619 0.00 0.00 0.00 2.93
268 270 1.198637 GCTGATGTCCACTCTGTTTGC 59.801 52.381 0.00 0.00 0.00 3.68
269 271 1.462283 CTGATGTCCACTCTGTTTGCG 59.538 52.381 0.00 0.00 0.00 4.85
270 272 0.798776 GATGTCCACTCTGTTTGCGG 59.201 55.000 0.00 0.00 0.00 5.69
271 273 0.108585 ATGTCCACTCTGTTTGCGGT 59.891 50.000 0.00 0.00 0.00 5.68
272 274 0.107410 TGTCCACTCTGTTTGCGGTT 60.107 50.000 0.00 0.00 0.00 4.44
273 275 1.021968 GTCCACTCTGTTTGCGGTTT 58.978 50.000 0.00 0.00 0.00 3.27
274 276 2.215196 GTCCACTCTGTTTGCGGTTTA 58.785 47.619 0.00 0.00 0.00 2.01
275 277 2.812011 GTCCACTCTGTTTGCGGTTTAT 59.188 45.455 0.00 0.00 0.00 1.40
276 278 3.252458 GTCCACTCTGTTTGCGGTTTATT 59.748 43.478 0.00 0.00 0.00 1.40
277 279 3.886505 TCCACTCTGTTTGCGGTTTATTT 59.113 39.130 0.00 0.00 0.00 1.40
278 280 4.339814 TCCACTCTGTTTGCGGTTTATTTT 59.660 37.500 0.00 0.00 0.00 1.82
279 281 5.047188 CCACTCTGTTTGCGGTTTATTTTT 58.953 37.500 0.00 0.00 0.00 1.94
304 306 9.709495 TTTTTGTTTCTTCTTGCTGCATTATAT 57.291 25.926 1.84 0.00 0.00 0.86
311 313 9.955208 TTCTTCTTGCTGCATTATATATTTGTG 57.045 29.630 1.84 0.00 0.00 3.33
312 314 8.570488 TCTTCTTGCTGCATTATATATTTGTGG 58.430 33.333 1.84 0.00 0.00 4.17
313 315 7.218228 TCTTGCTGCATTATATATTTGTGGG 57.782 36.000 1.84 0.00 0.00 4.61
314 316 7.003482 TCTTGCTGCATTATATATTTGTGGGA 58.997 34.615 1.84 0.00 0.00 4.37
315 317 6.822667 TGCTGCATTATATATTTGTGGGAG 57.177 37.500 0.00 0.00 0.00 4.30
316 318 5.183713 TGCTGCATTATATATTTGTGGGAGC 59.816 40.000 0.00 0.00 0.00 4.70
317 319 5.416952 GCTGCATTATATATTTGTGGGAGCT 59.583 40.000 0.00 0.00 0.00 4.09
318 320 6.071728 GCTGCATTATATATTTGTGGGAGCTT 60.072 38.462 0.00 0.00 0.00 3.74
319 321 7.121168 GCTGCATTATATATTTGTGGGAGCTTA 59.879 37.037 0.00 0.00 0.00 3.09
320 322 8.565896 TGCATTATATATTTGTGGGAGCTTAG 57.434 34.615 0.00 0.00 0.00 2.18
321 323 8.382405 TGCATTATATATTTGTGGGAGCTTAGA 58.618 33.333 0.00 0.00 0.00 2.10
322 324 9.401058 GCATTATATATTTGTGGGAGCTTAGAT 57.599 33.333 0.00 0.00 0.00 1.98
325 327 9.725019 TTATATATTTGTGGGAGCTTAGATGTG 57.275 33.333 0.00 0.00 0.00 3.21
326 328 2.787473 TTGTGGGAGCTTAGATGTGG 57.213 50.000 0.00 0.00 0.00 4.17
327 329 0.253044 TGTGGGAGCTTAGATGTGGC 59.747 55.000 0.00 0.00 0.00 5.01
328 330 0.253044 GTGGGAGCTTAGATGTGGCA 59.747 55.000 0.00 0.00 0.00 4.92
329 331 1.133976 GTGGGAGCTTAGATGTGGCAT 60.134 52.381 0.00 0.00 0.00 4.40
330 332 1.141657 TGGGAGCTTAGATGTGGCATC 59.858 52.381 0.00 1.18 0.00 3.91
331 333 1.544314 GGGAGCTTAGATGTGGCATCC 60.544 57.143 5.59 0.00 0.00 3.51
332 334 1.419387 GGAGCTTAGATGTGGCATCCT 59.581 52.381 5.59 0.00 0.00 3.24
333 335 2.158696 GGAGCTTAGATGTGGCATCCTT 60.159 50.000 5.59 0.00 0.00 3.36
334 336 3.071602 GGAGCTTAGATGTGGCATCCTTA 59.928 47.826 5.59 0.00 0.00 2.69
335 337 4.444876 GGAGCTTAGATGTGGCATCCTTAA 60.445 45.833 5.59 0.00 0.00 1.85
336 338 5.116084 AGCTTAGATGTGGCATCCTTAAA 57.884 39.130 5.59 0.00 0.00 1.52
337 339 4.884164 AGCTTAGATGTGGCATCCTTAAAC 59.116 41.667 5.59 0.00 0.00 2.01
338 340 4.640201 GCTTAGATGTGGCATCCTTAAACA 59.360 41.667 5.59 0.00 0.00 2.83
339 341 5.300286 GCTTAGATGTGGCATCCTTAAACAT 59.700 40.000 5.59 0.00 34.28 2.71
340 342 6.514048 GCTTAGATGTGGCATCCTTAAACATC 60.514 42.308 6.07 6.07 44.77 3.06
343 345 6.551385 GATGTGGCATCCTTAAACATCTAG 57.449 41.667 6.80 0.00 42.38 2.43
344 346 5.692115 TGTGGCATCCTTAAACATCTAGA 57.308 39.130 0.00 0.00 0.00 2.43
345 347 6.252599 TGTGGCATCCTTAAACATCTAGAT 57.747 37.500 0.00 0.00 0.00 1.98
346 348 6.057533 TGTGGCATCCTTAAACATCTAGATG 58.942 40.000 27.63 27.63 44.15 2.90
363 365 9.376075 CATCTAGATGTGAATTAGACAAACTGT 57.624 33.333 22.42 0.00 34.23 3.55
367 369 8.450578 AGATGTGAATTAGACAAACTGTTTGA 57.549 30.769 33.05 15.70 43.26 2.69
541 566 7.121168 ACGACAATGAATCCACATTTACTGATT 59.879 33.333 0.00 0.00 38.25 2.57
543 568 7.037438 ACAATGAATCCACATTTACTGATTGC 58.963 34.615 0.00 0.00 38.25 3.56
690 719 2.853003 GCGTCTTCCGTAATTCTCACTC 59.147 50.000 0.00 0.00 39.32 3.51
730 759 3.500299 TGTGAAACCAATGGTCGTATGTG 59.500 43.478 4.95 0.00 33.12 3.21
731 760 3.500680 GTGAAACCAATGGTCGTATGTGT 59.499 43.478 4.95 0.00 33.12 3.72
758 788 5.705441 TGGAGTTGTATGGATGTCTTGAAAC 59.295 40.000 0.00 0.00 0.00 2.78
833 863 4.682021 AAGGGAGGAGATTTGGTTGATT 57.318 40.909 0.00 0.00 0.00 2.57
834 864 4.242336 AGGGAGGAGATTTGGTTGATTC 57.758 45.455 0.00 0.00 0.00 2.52
838 868 3.873952 GAGGAGATTTGGTTGATTCCTCG 59.126 47.826 2.90 0.00 40.73 4.63
876 906 1.129998 CATTCTCACTTGCTCTTGCCG 59.870 52.381 0.00 0.00 38.71 5.69
887 917 0.027194 CTCTTGCCGTTGATCATGCG 59.973 55.000 11.72 11.72 0.00 4.73
1620 1653 9.953697 ACTCTGTAAAGAAATATAAGACTAGCG 57.046 33.333 0.00 0.00 0.00 4.26
1621 1654 9.400638 CTCTGTAAAGAAATATAAGACTAGCGG 57.599 37.037 0.00 0.00 0.00 5.52
1622 1655 8.910944 TCTGTAAAGAAATATAAGACTAGCGGT 58.089 33.333 0.00 0.00 0.00 5.68
1623 1656 9.530633 CTGTAAAGAAATATAAGACTAGCGGTT 57.469 33.333 0.00 0.00 0.00 4.44
1624 1657 9.880157 TGTAAAGAAATATAAGACTAGCGGTTT 57.120 29.630 0.00 0.00 0.00 3.27
2069 2128 6.491394 TGTTCAAAAAGTGGAATAGAACACG 58.509 36.000 0.00 0.00 42.25 4.49
2327 2386 4.095782 GGTAGCGCATGTTCCTAATTTTCA 59.904 41.667 11.47 0.00 0.00 2.69
2426 2489 8.055279 TCCTTGTGATTTGTTATGAATCCTTC 57.945 34.615 0.00 0.00 33.56 3.46
2625 2688 7.926018 GGAACTTTCTTGTCCAACATTTTGTAT 59.074 33.333 0.00 0.00 0.00 2.29
2645 2708 9.878667 TTTGTATAATGGTAAATGAGTCGAGAA 57.121 29.630 0.00 0.00 0.00 2.87
2646 2709 8.867112 TGTATAATGGTAAATGAGTCGAGAAC 57.133 34.615 0.00 0.00 0.00 3.01
2729 2792 1.900498 GGCAGTTGAAGGCTGTGCT 60.900 57.895 0.00 0.00 36.42 4.40
2814 2877 6.831664 ATTTCTCCCAGGTACATTACTGAT 57.168 37.500 0.00 0.00 36.86 2.90
2928 2991 6.209192 TGTTGTTAAGCTCATCATCATGGTTT 59.791 34.615 0.00 0.00 0.00 3.27
3331 3403 1.226491 GCACATTCTGCCATGCGTC 60.226 57.895 0.00 0.00 40.42 5.19
3509 3581 3.551496 CTTGGGGAAGGTGCGAGCA 62.551 63.158 0.00 0.00 0.00 4.26
3577 3649 7.795431 ACATGTTTACAGACAAATTAATGCG 57.205 32.000 0.00 0.00 32.47 4.73
3682 3756 2.037902 TCTTGTGACCTGCCGTATGAAA 59.962 45.455 0.00 0.00 0.00 2.69
3692 3766 5.363005 ACCTGCCGTATGAAAGTAGTATTCT 59.637 40.000 0.00 0.00 0.00 2.40
3693 3767 6.127140 ACCTGCCGTATGAAAGTAGTATTCTT 60.127 38.462 0.00 0.00 0.00 2.52
3787 4078 6.704937 TCTGCTCTTCATGCAATTACTATCAG 59.295 38.462 0.00 0.00 40.13 2.90
3948 4278 5.448360 GCTTGATCAAGTTAATCAGGTCAGC 60.448 44.000 30.88 12.87 40.45 4.26
4102 4534 1.803334 TACGAGGGACATGTGCAAAC 58.197 50.000 19.67 8.40 0.00 2.93
4233 4666 5.519927 TGCGATAAATACATATCATCTGGCG 59.480 40.000 0.00 0.00 32.84 5.69
4271 4704 4.755266 AGCGAAGGTCATACTACCATTT 57.245 40.909 0.00 0.00 42.40 2.32
4276 4709 6.537660 GCGAAGGTCATACTACCATTTAAAGT 59.462 38.462 0.00 0.00 42.40 2.66
4279 4712 8.788325 AAGGTCATACTACCATTTAAAGTCAC 57.212 34.615 0.00 0.00 42.40 3.67
4302 4735 2.911552 TACACCAATTCCCCCTTTCC 57.088 50.000 0.00 0.00 0.00 3.13
4329 4763 4.783418 CCCCCTTTGGCTATTGCA 57.217 55.556 0.66 0.00 41.91 4.08
4330 4764 2.989480 CCCCCTTTGGCTATTGCAA 58.011 52.632 0.00 0.00 41.91 4.08
4331 4765 1.499368 CCCCCTTTGGCTATTGCAAT 58.501 50.000 17.56 17.56 41.91 3.56
4332 4766 1.839354 CCCCCTTTGGCTATTGCAATT 59.161 47.619 18.75 1.81 41.91 2.32
4333 4767 2.420408 CCCCCTTTGGCTATTGCAATTG 60.420 50.000 18.75 16.87 41.91 2.32
4700 5134 9.073475 GCCATATTTTACCTGTATTATGGTGAA 57.927 33.333 15.52 0.00 37.74 3.18
4741 5175 6.309494 CGACATACATACGAAAACAGAAGGAA 59.691 38.462 0.00 0.00 0.00 3.36
4926 5360 0.617820 ATAGGCACTGGAGGGTTCGT 60.618 55.000 0.00 0.00 41.52 3.85
4935 5369 1.087501 GGAGGGTTCGTCTTGCAATC 58.912 55.000 0.00 0.00 0.00 2.67
5084 5518 4.038162 TGGTTCAAGGTTAATTTTCCCACG 59.962 41.667 0.00 0.00 0.00 4.94
5089 5523 3.349927 AGGTTAATTTTCCCACGGCTAC 58.650 45.455 0.00 0.00 0.00 3.58
5092 5526 1.310216 AATTTTCCCACGGCTACGGC 61.310 55.000 0.00 0.00 46.48 5.68
5235 5687 8.500753 ACAAAACACACATCTAAGAAACTGTA 57.499 30.769 0.00 0.00 0.00 2.74
5302 5754 4.535526 AACAGCACCTTTGTTTCTTTGT 57.464 36.364 0.00 0.00 35.32 2.83
5303 5755 4.535526 ACAGCACCTTTGTTTCTTTGTT 57.464 36.364 0.00 0.00 0.00 2.83
5396 5960 3.494626 GCGTATAGCAGTACATTGCATGT 59.505 43.478 9.50 6.93 46.47 3.21
5528 6092 6.094881 GGTTGGCTTGCATATTTTCTGTAGTA 59.905 38.462 0.00 0.00 0.00 1.82
5560 6124 1.130561 GCGGCTTGCGTATTTTCTCTT 59.869 47.619 0.00 0.00 0.00 2.85
5571 6135 7.021196 TGCGTATTTTCTCTTGTTAAGATTGC 58.979 34.615 0.00 0.00 36.82 3.56
5600 6164 8.184304 ACACTCCCTCTGTTCACTATTATATC 57.816 38.462 0.00 0.00 0.00 1.63
5626 6190 6.604735 AACTTTATGCTGAATCGGATGTAC 57.395 37.500 0.00 0.00 0.00 2.90
5665 6229 8.902540 AGTGTGTTTATTCACTCATTTCAGTA 57.097 30.769 0.00 0.00 40.28 2.74
5691 6255 5.871396 ATGTAGTCCATACCGAAATGTCT 57.129 39.130 0.00 0.00 33.01 3.41
5942 6506 0.890996 GCACTAAAGCCAGCACACCT 60.891 55.000 0.00 0.00 0.00 4.00
5962 6526 1.210234 TGCAGCTAAGCAGGCATCTTA 59.790 47.619 0.00 0.00 40.11 2.10
6058 6622 8.065473 TGCATTAATGATGTTTTGATACAGGT 57.935 30.769 19.73 0.00 38.07 4.00
6215 6779 1.289160 TCTCATTGCTAGCCCCTGTT 58.711 50.000 13.29 0.00 0.00 3.16
6534 7098 1.001860 GCTGAGAAGACTGTGAAGCCT 59.998 52.381 0.00 0.00 0.00 4.58
6543 7107 0.886490 CTGTGAAGCCTTGCCTCGTT 60.886 55.000 0.00 0.00 0.00 3.85
6708 7273 9.028185 GTACATGTAATTTACCCTTAAGAGTCG 57.972 37.037 7.25 0.00 0.00 4.18
6717 7282 2.097791 CCCTTAAGAGTCGGAGAGTTCG 59.902 54.545 3.36 0.00 42.24 3.95
6892 7457 4.280677 CCATGTGTTGGGTGTGATTTTACT 59.719 41.667 0.00 0.00 42.33 2.24
6923 7488 3.315191 CCATTGTCCGTTGTTTCTGACTT 59.685 43.478 0.00 0.00 0.00 3.01
6924 7489 4.527564 CATTGTCCGTTGTTTCTGACTTC 58.472 43.478 0.00 0.00 0.00 3.01
6925 7490 3.536956 TGTCCGTTGTTTCTGACTTCT 57.463 42.857 0.00 0.00 0.00 2.85
6970 7535 3.997021 GCTATTATCTTGGTCGTGGATGG 59.003 47.826 0.00 0.00 0.00 3.51
7093 7664 9.595823 CATCTCCAATAGAAAAGATGCAAATTT 57.404 29.630 0.00 0.00 38.86 1.82
7095 7666 8.036575 TCTCCAATAGAAAAGATGCAAATTTGG 58.963 33.333 19.47 2.11 32.98 3.28
7096 7667 7.905265 TCCAATAGAAAAGATGCAAATTTGGA 58.095 30.769 19.47 17.40 37.23 3.53
7097 7668 8.542080 TCCAATAGAAAAGATGCAAATTTGGAT 58.458 29.630 23.31 23.31 42.18 3.41
7110 7690 7.098477 TGCAAATTTGGATGGAGATGTAAAAG 58.902 34.615 19.47 0.00 0.00 2.27
7162 7742 0.681175 CAAAGGAAGGGCCAACTTGG 59.319 55.000 6.18 3.10 41.55 3.61
7201 7781 7.886405 ACGAAGATAAAAGAGTAACTCCAAC 57.114 36.000 0.00 0.00 0.00 3.77
7225 7805 7.264221 ACAGAAGATGCAAACTAGAGATGTAG 58.736 38.462 0.00 0.00 0.00 2.74
7226 7806 7.093552 ACAGAAGATGCAAACTAGAGATGTAGT 60.094 37.037 0.00 0.00 34.56 2.73
7227 7807 7.763528 CAGAAGATGCAAACTAGAGATGTAGTT 59.236 37.037 0.00 0.00 43.68 2.24
7228 7808 7.763528 AGAAGATGCAAACTAGAGATGTAGTTG 59.236 37.037 0.00 0.81 41.47 3.16
7229 7809 7.175347 AGATGCAAACTAGAGATGTAGTTGA 57.825 36.000 0.00 0.00 41.47 3.18
7230 7810 7.615403 AGATGCAAACTAGAGATGTAGTTGAA 58.385 34.615 0.00 0.00 41.47 2.69
7232 7812 6.993079 TGCAAACTAGAGATGTAGTTGAAGA 58.007 36.000 0.00 0.00 41.47 2.87
7236 7816 6.782082 ACTAGAGATGTAGTTGAAGATGCA 57.218 37.500 0.00 0.00 28.15 3.96
7237 7817 7.175347 ACTAGAGATGTAGTTGAAGATGCAA 57.825 36.000 0.00 0.00 28.15 4.08
7238 7818 7.615403 ACTAGAGATGTAGTTGAAGATGCAAA 58.385 34.615 0.00 0.00 28.15 3.68
7239 7819 8.097038 ACTAGAGATGTAGTTGAAGATGCAAAA 58.903 33.333 0.00 0.00 28.15 2.44
7240 7820 7.138692 AGAGATGTAGTTGAAGATGCAAAAC 57.861 36.000 0.00 0.00 0.00 2.43
7241 7821 5.931532 AGATGTAGTTGAAGATGCAAAACG 58.068 37.500 0.00 0.00 0.00 3.60
7242 7822 5.700832 AGATGTAGTTGAAGATGCAAAACGA 59.299 36.000 0.00 0.00 0.00 3.85
7243 7823 5.743026 TGTAGTTGAAGATGCAAAACGAA 57.257 34.783 0.00 0.00 0.00 3.85
7244 7824 5.747565 TGTAGTTGAAGATGCAAAACGAAG 58.252 37.500 0.00 0.00 0.00 3.79
7245 7825 5.525745 TGTAGTTGAAGATGCAAAACGAAGA 59.474 36.000 0.00 0.00 0.00 2.87
7246 7826 4.848757 AGTTGAAGATGCAAAACGAAGAC 58.151 39.130 0.00 0.00 0.00 3.01
7247 7827 4.335315 AGTTGAAGATGCAAAACGAAGACA 59.665 37.500 0.00 0.00 0.00 3.41
7248 7828 4.891627 TGAAGATGCAAAACGAAGACAA 57.108 36.364 0.00 0.00 0.00 3.18
7249 7829 5.242069 TGAAGATGCAAAACGAAGACAAA 57.758 34.783 0.00 0.00 0.00 2.83
7250 7830 5.645624 TGAAGATGCAAAACGAAGACAAAA 58.354 33.333 0.00 0.00 0.00 2.44
7251 7831 5.743398 TGAAGATGCAAAACGAAGACAAAAG 59.257 36.000 0.00 0.00 0.00 2.27
7252 7832 5.499139 AGATGCAAAACGAAGACAAAAGA 57.501 34.783 0.00 0.00 0.00 2.52
7253 7833 5.514279 AGATGCAAAACGAAGACAAAAGAG 58.486 37.500 0.00 0.00 0.00 2.85
7254 7834 4.695217 TGCAAAACGAAGACAAAAGAGT 57.305 36.364 0.00 0.00 0.00 3.24
7255 7835 5.804692 TGCAAAACGAAGACAAAAGAGTA 57.195 34.783 0.00 0.00 0.00 2.59
7256 7836 6.184580 TGCAAAACGAAGACAAAAGAGTAA 57.815 33.333 0.00 0.00 0.00 2.24
7257 7837 6.025280 TGCAAAACGAAGACAAAAGAGTAAC 58.975 36.000 0.00 0.00 0.00 2.50
7258 7838 6.128117 TGCAAAACGAAGACAAAAGAGTAACT 60.128 34.615 0.00 0.00 0.00 2.24
7259 7839 6.411203 GCAAAACGAAGACAAAAGAGTAACTC 59.589 38.462 0.00 0.00 0.00 3.01
7260 7840 6.600246 AAACGAAGACAAAAGAGTAACTCC 57.400 37.500 0.00 0.00 0.00 3.85
7261 7841 5.272283 ACGAAGACAAAAGAGTAACTCCA 57.728 39.130 0.00 0.00 0.00 3.86
7262 7842 5.667466 ACGAAGACAAAAGAGTAACTCCAA 58.333 37.500 0.00 0.00 0.00 3.53
7263 7843 5.522824 ACGAAGACAAAAGAGTAACTCCAAC 59.477 40.000 0.00 0.00 0.00 3.77
7264 7844 5.522460 CGAAGACAAAAGAGTAACTCCAACA 59.478 40.000 0.00 0.00 0.00 3.33
7265 7845 6.292381 CGAAGACAAAAGAGTAACTCCAACAG 60.292 42.308 0.00 0.00 0.00 3.16
7266 7846 6.235231 AGACAAAAGAGTAACTCCAACAGA 57.765 37.500 0.00 0.00 0.00 3.41
7267 7847 6.650120 AGACAAAAGAGTAACTCCAACAGAA 58.350 36.000 0.00 0.00 0.00 3.02
7268 7848 6.763610 AGACAAAAGAGTAACTCCAACAGAAG 59.236 38.462 0.00 0.00 0.00 2.85
7269 7849 6.650120 ACAAAAGAGTAACTCCAACAGAAGA 58.350 36.000 0.00 0.00 0.00 2.87
7270 7850 7.283329 ACAAAAGAGTAACTCCAACAGAAGAT 58.717 34.615 0.00 0.00 0.00 2.40
7271 7851 7.227512 ACAAAAGAGTAACTCCAACAGAAGATG 59.772 37.037 0.00 0.00 0.00 2.90
7272 7852 6.426646 AAGAGTAACTCCAACAGAAGATGT 57.573 37.500 0.00 0.00 46.97 3.06
7273 7853 7.540474 AAGAGTAACTCCAACAGAAGATGTA 57.460 36.000 0.00 0.00 43.00 2.29
7274 7854 7.540474 AGAGTAACTCCAACAGAAGATGTAA 57.460 36.000 0.00 0.00 43.00 2.41
7275 7855 7.963532 AGAGTAACTCCAACAGAAGATGTAAA 58.036 34.615 0.00 0.00 43.00 2.01
7276 7856 8.429641 AGAGTAACTCCAACAGAAGATGTAAAA 58.570 33.333 0.00 0.00 43.00 1.52
7277 7857 8.379457 AGTAACTCCAACAGAAGATGTAAAAC 57.621 34.615 0.00 0.00 43.00 2.43
7278 7858 8.211629 AGTAACTCCAACAGAAGATGTAAAACT 58.788 33.333 0.00 0.00 43.00 2.66
7279 7859 6.867662 ACTCCAACAGAAGATGTAAAACTG 57.132 37.500 0.00 0.00 43.00 3.16
7280 7860 5.239525 ACTCCAACAGAAGATGTAAAACTGC 59.760 40.000 0.00 0.00 43.00 4.40
7281 7861 4.518970 TCCAACAGAAGATGTAAAACTGCC 59.481 41.667 0.00 0.00 43.00 4.85
7282 7862 4.466828 CAACAGAAGATGTAAAACTGCCG 58.533 43.478 0.00 0.00 43.00 5.69
7283 7863 2.484264 ACAGAAGATGTAAAACTGCCGC 59.516 45.455 0.00 0.00 41.60 6.53
7284 7864 1.732259 AGAAGATGTAAAACTGCCGCG 59.268 47.619 0.00 0.00 0.00 6.46
7285 7865 0.168128 AAGATGTAAAACTGCCGCGC 59.832 50.000 0.00 0.00 0.00 6.86
7288 7868 1.366111 ATGTAAAACTGCCGCGCGAT 61.366 50.000 34.63 9.72 0.00 4.58
7296 7876 4.759096 GCCGCGCGATTGCTGTTT 62.759 61.111 34.63 0.00 39.65 2.83
7368 9888 4.753610 CAGAAGTGCATCATCGACCATAAT 59.246 41.667 0.00 0.00 0.00 1.28
7369 9889 5.237996 CAGAAGTGCATCATCGACCATAATT 59.762 40.000 0.00 0.00 0.00 1.40
7370 9890 5.824624 AGAAGTGCATCATCGACCATAATTT 59.175 36.000 0.00 0.00 0.00 1.82
7371 9891 6.319658 AGAAGTGCATCATCGACCATAATTTT 59.680 34.615 0.00 0.00 0.00 1.82
7372 9892 7.498900 AGAAGTGCATCATCGACCATAATTTTA 59.501 33.333 0.00 0.00 0.00 1.52
7373 9893 7.566760 AGTGCATCATCGACCATAATTTTAA 57.433 32.000 0.00 0.00 0.00 1.52
7374 9894 7.995289 AGTGCATCATCGACCATAATTTTAAA 58.005 30.769 0.00 0.00 0.00 1.52
7375 9895 8.632679 AGTGCATCATCGACCATAATTTTAAAT 58.367 29.630 0.00 0.00 0.00 1.40
7376 9896 8.905702 GTGCATCATCGACCATAATTTTAAATC 58.094 33.333 0.00 0.00 0.00 2.17
7377 9897 8.081633 TGCATCATCGACCATAATTTTAAATCC 58.918 33.333 0.00 0.00 0.00 3.01
7378 9898 8.299570 GCATCATCGACCATAATTTTAAATCCT 58.700 33.333 0.00 0.00 0.00 3.24
7381 9901 9.839817 TCATCGACCATAATTTTAAATCCTACA 57.160 29.630 0.00 0.00 0.00 2.74
7384 9904 9.675464 TCGACCATAATTTTAAATCCTACAAGT 57.325 29.630 0.00 0.00 0.00 3.16
7470 9990 4.574013 GGTCCAACAAATGAAAATGCACAA 59.426 37.500 0.00 0.00 0.00 3.33
7481 10002 7.789273 ATGAAAATGCACAAAATCACTCAAA 57.211 28.000 0.00 0.00 0.00 2.69
7577 10102 0.529773 TGCGTTGAAGTCTCGTTGCT 60.530 50.000 0.00 0.00 0.00 3.91
7586 10111 0.939577 GTCTCGTTGCTGCGAACTCA 60.940 55.000 11.29 0.96 40.57 3.41
7605 10130 5.316167 ACTCAACCAGAAGCACATTCATTA 58.684 37.500 0.00 0.00 40.67 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 53 6.122277 ACATATAGCTTATGTTGGTTGTGCT 58.878 36.000 12.81 0.00 34.79 4.40
182 184 5.935789 CCCAAATGACAAAGAAAGATGCAAT 59.064 36.000 0.00 0.00 0.00 3.56
198 200 4.412199 CCTAGACATACCTTCCCCAAATGA 59.588 45.833 0.00 0.00 0.00 2.57
201 203 3.778629 GTCCTAGACATACCTTCCCCAAA 59.221 47.826 0.00 0.00 32.09 3.28
202 204 3.246203 TGTCCTAGACATACCTTCCCCAA 60.246 47.826 0.00 0.00 37.67 4.12
203 205 2.316677 TGTCCTAGACATACCTTCCCCA 59.683 50.000 0.00 0.00 37.67 4.96
204 206 2.699321 GTGTCCTAGACATACCTTCCCC 59.301 54.545 0.05 0.00 44.63 4.81
205 207 3.371965 TGTGTCCTAGACATACCTTCCC 58.628 50.000 0.05 0.00 44.63 3.97
206 208 4.896482 AGATGTGTCCTAGACATACCTTCC 59.104 45.833 0.05 0.00 44.63 3.46
207 209 6.999272 TCTAGATGTGTCCTAGACATACCTTC 59.001 42.308 0.05 0.00 44.63 3.46
208 210 6.912426 TCTAGATGTGTCCTAGACATACCTT 58.088 40.000 0.05 0.00 44.63 3.50
209 211 6.517013 TCTAGATGTGTCCTAGACATACCT 57.483 41.667 0.05 0.00 44.63 3.08
210 212 7.151999 CATCTAGATGTGTCCTAGACATACC 57.848 44.000 22.42 0.00 44.63 2.73
225 227 8.976471 CAGCTTAGTTTATGTCACATCTAGATG 58.024 37.037 27.63 27.63 44.15 2.90
226 228 8.918116 TCAGCTTAGTTTATGTCACATCTAGAT 58.082 33.333 0.00 0.00 0.00 1.98
227 229 8.293699 TCAGCTTAGTTTATGTCACATCTAGA 57.706 34.615 0.00 0.00 0.00 2.43
228 230 8.976471 CATCAGCTTAGTTTATGTCACATCTAG 58.024 37.037 0.00 0.00 0.00 2.43
229 231 8.478066 ACATCAGCTTAGTTTATGTCACATCTA 58.522 33.333 0.00 0.00 0.00 1.98
230 232 7.334090 ACATCAGCTTAGTTTATGTCACATCT 58.666 34.615 0.00 0.00 0.00 2.90
231 233 7.254590 GGACATCAGCTTAGTTTATGTCACATC 60.255 40.741 19.61 4.51 45.23 3.06
232 234 6.540189 GGACATCAGCTTAGTTTATGTCACAT 59.460 38.462 19.61 0.00 45.23 3.21
233 235 5.874810 GGACATCAGCTTAGTTTATGTCACA 59.125 40.000 19.61 0.00 45.23 3.58
234 236 5.874810 TGGACATCAGCTTAGTTTATGTCAC 59.125 40.000 19.61 12.21 45.23 3.67
235 237 5.874810 GTGGACATCAGCTTAGTTTATGTCA 59.125 40.000 19.61 7.94 45.23 3.58
236 238 6.109359 AGTGGACATCAGCTTAGTTTATGTC 58.891 40.000 12.79 12.79 43.58 3.06
237 239 6.054860 AGTGGACATCAGCTTAGTTTATGT 57.945 37.500 0.00 0.00 33.63 2.29
238 240 6.257411 CAGAGTGGACATCAGCTTAGTTTATG 59.743 42.308 0.00 0.00 0.00 1.90
239 241 6.070538 ACAGAGTGGACATCAGCTTAGTTTAT 60.071 38.462 0.00 0.00 0.00 1.40
240 242 5.246203 ACAGAGTGGACATCAGCTTAGTTTA 59.754 40.000 0.00 0.00 0.00 2.01
241 243 4.040952 ACAGAGTGGACATCAGCTTAGTTT 59.959 41.667 0.00 0.00 0.00 2.66
242 244 3.580458 ACAGAGTGGACATCAGCTTAGTT 59.420 43.478 0.00 0.00 0.00 2.24
243 245 3.169099 ACAGAGTGGACATCAGCTTAGT 58.831 45.455 0.00 0.00 0.00 2.24
244 246 3.883830 ACAGAGTGGACATCAGCTTAG 57.116 47.619 0.00 0.00 0.00 2.18
245 247 4.318332 CAAACAGAGTGGACATCAGCTTA 58.682 43.478 0.00 0.00 0.00 3.09
246 248 3.144506 CAAACAGAGTGGACATCAGCTT 58.855 45.455 0.00 0.00 0.00 3.74
247 249 2.775890 CAAACAGAGTGGACATCAGCT 58.224 47.619 0.00 0.00 0.00 4.24
248 250 1.198637 GCAAACAGAGTGGACATCAGC 59.801 52.381 0.00 0.00 0.00 4.26
249 251 1.462283 CGCAAACAGAGTGGACATCAG 59.538 52.381 0.00 0.00 0.00 2.90
250 252 1.511850 CGCAAACAGAGTGGACATCA 58.488 50.000 0.00 0.00 0.00 3.07
251 253 0.798776 CCGCAAACAGAGTGGACATC 59.201 55.000 0.00 0.00 38.96 3.06
252 254 0.108585 ACCGCAAACAGAGTGGACAT 59.891 50.000 0.00 0.00 39.89 3.06
253 255 0.107410 AACCGCAAACAGAGTGGACA 60.107 50.000 0.00 0.00 39.89 4.02
254 256 1.021968 AAACCGCAAACAGAGTGGAC 58.978 50.000 0.00 0.00 39.89 4.02
255 257 2.623878 TAAACCGCAAACAGAGTGGA 57.376 45.000 0.00 0.00 39.89 4.02
256 258 3.915437 AATAAACCGCAAACAGAGTGG 57.085 42.857 0.00 0.00 42.31 4.00
278 280 9.709495 ATATAATGCAGCAAGAAGAAACAAAAA 57.291 25.926 0.00 0.00 0.00 1.94
285 287 9.955208 CACAAATATATAATGCAGCAAGAAGAA 57.045 29.630 0.00 0.00 0.00 2.52
286 288 8.570488 CCACAAATATATAATGCAGCAAGAAGA 58.430 33.333 0.00 0.00 0.00 2.87
287 289 7.811236 CCCACAAATATATAATGCAGCAAGAAG 59.189 37.037 0.00 0.00 0.00 2.85
288 290 7.505248 TCCCACAAATATATAATGCAGCAAGAA 59.495 33.333 0.00 0.00 0.00 2.52
289 291 7.003482 TCCCACAAATATATAATGCAGCAAGA 58.997 34.615 0.00 0.00 0.00 3.02
290 292 7.218228 TCCCACAAATATATAATGCAGCAAG 57.782 36.000 0.00 0.00 0.00 4.01
291 293 6.294675 GCTCCCACAAATATATAATGCAGCAA 60.295 38.462 0.00 0.00 0.00 3.91
292 294 5.183713 GCTCCCACAAATATATAATGCAGCA 59.816 40.000 0.00 0.00 0.00 4.41
293 295 5.416952 AGCTCCCACAAATATATAATGCAGC 59.583 40.000 0.00 0.00 0.00 5.25
294 296 7.458409 AAGCTCCCACAAATATATAATGCAG 57.542 36.000 0.00 0.00 0.00 4.41
295 297 8.382405 TCTAAGCTCCCACAAATATATAATGCA 58.618 33.333 0.00 0.00 0.00 3.96
296 298 8.792830 TCTAAGCTCCCACAAATATATAATGC 57.207 34.615 0.00 0.00 0.00 3.56
299 301 9.725019 CACATCTAAGCTCCCACAAATATATAA 57.275 33.333 0.00 0.00 0.00 0.98
300 302 8.321353 CCACATCTAAGCTCCCACAAATATATA 58.679 37.037 0.00 0.00 0.00 0.86
301 303 7.170965 CCACATCTAAGCTCCCACAAATATAT 58.829 38.462 0.00 0.00 0.00 0.86
302 304 6.533730 CCACATCTAAGCTCCCACAAATATA 58.466 40.000 0.00 0.00 0.00 0.86
303 305 5.380043 CCACATCTAAGCTCCCACAAATAT 58.620 41.667 0.00 0.00 0.00 1.28
304 306 4.780815 CCACATCTAAGCTCCCACAAATA 58.219 43.478 0.00 0.00 0.00 1.40
305 307 3.624777 CCACATCTAAGCTCCCACAAAT 58.375 45.455 0.00 0.00 0.00 2.32
306 308 2.879756 GCCACATCTAAGCTCCCACAAA 60.880 50.000 0.00 0.00 0.00 2.83
307 309 1.340017 GCCACATCTAAGCTCCCACAA 60.340 52.381 0.00 0.00 0.00 3.33
308 310 0.253044 GCCACATCTAAGCTCCCACA 59.747 55.000 0.00 0.00 0.00 4.17
309 311 0.253044 TGCCACATCTAAGCTCCCAC 59.747 55.000 0.00 0.00 0.00 4.61
310 312 1.141657 GATGCCACATCTAAGCTCCCA 59.858 52.381 0.31 0.00 0.00 4.37
311 313 1.544314 GGATGCCACATCTAAGCTCCC 60.544 57.143 7.45 0.00 0.00 4.30
312 314 1.419387 AGGATGCCACATCTAAGCTCC 59.581 52.381 7.45 0.00 0.00 4.70
313 315 2.926778 AGGATGCCACATCTAAGCTC 57.073 50.000 7.45 0.00 0.00 4.09
314 316 4.778213 TTAAGGATGCCACATCTAAGCT 57.222 40.909 7.45 0.00 0.00 3.74
315 317 4.640201 TGTTTAAGGATGCCACATCTAAGC 59.360 41.667 7.45 3.05 0.00 3.09
316 318 6.949352 ATGTTTAAGGATGCCACATCTAAG 57.051 37.500 7.45 0.00 0.00 2.18
317 319 6.942532 GATGTTTAAGGATGCCACATCTAA 57.057 37.500 7.45 0.00 40.34 2.10
319 321 5.121380 AGATGTTTAAGGATGCCACATCT 57.879 39.130 9.79 9.79 45.98 2.90
320 322 6.291377 TCTAGATGTTTAAGGATGCCACATC 58.709 40.000 6.20 6.20 42.72 3.06
321 323 6.252599 TCTAGATGTTTAAGGATGCCACAT 57.747 37.500 0.00 0.00 0.00 3.21
322 324 5.692115 TCTAGATGTTTAAGGATGCCACA 57.308 39.130 0.00 0.00 0.00 4.17
323 325 6.551385 CATCTAGATGTTTAAGGATGCCAC 57.449 41.667 22.42 0.00 34.23 5.01
337 339 9.376075 ACAGTTTGTCTAATTCACATCTAGATG 57.624 33.333 27.63 27.63 44.15 2.90
338 340 9.950496 AACAGTTTGTCTAATTCACATCTAGAT 57.050 29.630 0.00 0.00 0.00 1.98
339 341 9.778741 AAACAGTTTGTCTAATTCACATCTAGA 57.221 29.630 0.00 0.00 0.00 2.43
340 342 9.817365 CAAACAGTTTGTCTAATTCACATCTAG 57.183 33.333 16.77 0.00 35.94 2.43
341 343 9.554395 TCAAACAGTTTGTCTAATTCACATCTA 57.446 29.630 22.70 0.00 41.36 1.98
342 344 8.450578 TCAAACAGTTTGTCTAATTCACATCT 57.549 30.769 22.70 0.00 41.36 2.90
343 345 7.805071 CCTCAAACAGTTTGTCTAATTCACATC 59.195 37.037 22.70 0.00 41.36 3.06
344 346 7.502226 TCCTCAAACAGTTTGTCTAATTCACAT 59.498 33.333 22.70 0.00 41.36 3.21
345 347 6.826231 TCCTCAAACAGTTTGTCTAATTCACA 59.174 34.615 22.70 1.96 41.36 3.58
346 348 7.259290 TCCTCAAACAGTTTGTCTAATTCAC 57.741 36.000 22.70 0.00 41.36 3.18
347 349 7.873719 TTCCTCAAACAGTTTGTCTAATTCA 57.126 32.000 22.70 3.27 41.36 2.57
348 350 8.406297 ACTTTCCTCAAACAGTTTGTCTAATTC 58.594 33.333 22.70 0.00 41.36 2.17
349 351 8.293699 ACTTTCCTCAAACAGTTTGTCTAATT 57.706 30.769 22.70 7.56 41.36 1.40
350 352 7.556275 TGACTTTCCTCAAACAGTTTGTCTAAT 59.444 33.333 22.70 6.76 41.36 1.73
351 353 6.882140 TGACTTTCCTCAAACAGTTTGTCTAA 59.118 34.615 22.70 13.41 41.36 2.10
352 354 6.411376 TGACTTTCCTCAAACAGTTTGTCTA 58.589 36.000 22.70 8.83 41.36 2.59
353 355 5.253330 TGACTTTCCTCAAACAGTTTGTCT 58.747 37.500 22.70 2.32 41.36 3.41
354 356 5.560966 TGACTTTCCTCAAACAGTTTGTC 57.439 39.130 22.70 12.99 41.36 3.18
355 357 5.242838 TGTTGACTTTCCTCAAACAGTTTGT 59.757 36.000 22.70 4.54 41.36 2.83
356 358 5.708948 TGTTGACTTTCCTCAAACAGTTTG 58.291 37.500 18.62 18.62 41.96 2.93
357 359 5.975693 TGTTGACTTTCCTCAAACAGTTT 57.024 34.783 0.00 0.00 31.90 2.66
358 360 5.975693 TTGTTGACTTTCCTCAAACAGTT 57.024 34.783 0.00 0.00 31.90 3.16
359 361 5.975693 TTTGTTGACTTTCCTCAAACAGT 57.024 34.783 0.00 0.00 31.90 3.55
360 362 9.533253 AATTATTTGTTGACTTTCCTCAAACAG 57.467 29.630 0.00 0.00 31.90 3.16
361 363 9.883142 AAATTATTTGTTGACTTTCCTCAAACA 57.117 25.926 0.00 0.00 31.90 2.83
541 566 1.332375 GTGACTGGTTTAACTTGCGCA 59.668 47.619 5.66 5.66 0.00 6.09
543 568 1.595794 ACGTGACTGGTTTAACTTGCG 59.404 47.619 0.00 0.00 0.00 4.85
636 665 2.094026 GGGGCACTTCCATGAAATCAAC 60.094 50.000 0.00 0.00 36.21 3.18
690 719 9.289303 GGTTTCACAGCAACATATTAATACAAG 57.711 33.333 0.00 0.00 0.00 3.16
730 759 7.047891 TCAAGACATCCATACAACTCCAATAC 58.952 38.462 0.00 0.00 0.00 1.89
731 760 7.194112 TCAAGACATCCATACAACTCCAATA 57.806 36.000 0.00 0.00 0.00 1.90
833 863 1.760613 AGAGTGGTGTTTCAACGAGGA 59.239 47.619 0.00 0.00 0.00 3.71
834 864 1.867233 CAGAGTGGTGTTTCAACGAGG 59.133 52.381 0.00 0.00 0.00 4.63
838 868 1.388547 TGGCAGAGTGGTGTTTCAAC 58.611 50.000 0.00 0.00 0.00 3.18
876 906 7.409697 AGTACAAAATATGTCGCATGATCAAC 58.590 34.615 0.00 0.00 42.70 3.18
887 917 8.718102 ATGTGTCCTGTAGTACAAAATATGTC 57.282 34.615 4.21 0.00 42.70 3.06
918 948 1.657594 CTAGAACTGAGCACGCACATG 59.342 52.381 0.00 0.00 0.00 3.21
919 949 1.273606 ACTAGAACTGAGCACGCACAT 59.726 47.619 0.00 0.00 0.00 3.21
1489 1519 4.823989 AGGCCAGTAGAAATATCATGCAAC 59.176 41.667 5.01 0.00 0.00 4.17
1508 1538 4.794981 GCAAACACAGTTACCTAAAAGGCC 60.795 45.833 0.00 0.00 39.63 5.19
1617 1650 7.282450 CCCTCTGTAAAGAAATATAAAACCGCT 59.718 37.037 0.00 0.00 0.00 5.52
1618 1651 7.281549 TCCCTCTGTAAAGAAATATAAAACCGC 59.718 37.037 0.00 0.00 0.00 5.68
1619 1652 8.726870 TCCCTCTGTAAAGAAATATAAAACCG 57.273 34.615 0.00 0.00 0.00 4.44
1620 1653 9.682465 ACTCCCTCTGTAAAGAAATATAAAACC 57.318 33.333 0.00 0.00 0.00 3.27
2069 2128 6.072728 TGGCAACATCAGAAACTACAATACAC 60.073 38.462 0.00 0.00 46.17 2.90
2107 2166 4.997905 ACACAATCATTCAGAGAACACG 57.002 40.909 0.00 0.00 0.00 4.49
2426 2489 5.629079 GGATACTTTTGGTTTCAGTCCTG 57.371 43.478 0.00 0.00 0.00 3.86
2625 2688 7.608153 TCAAGTTCTCGACTCATTTACCATTA 58.392 34.615 0.00 0.00 37.72 1.90
2635 2698 4.278419 TCAATGTCTCAAGTTCTCGACTCA 59.722 41.667 0.00 0.00 37.72 3.41
2645 2708 4.389992 CAGCGTGTAATCAATGTCTCAAGT 59.610 41.667 0.00 0.00 0.00 3.16
2646 2709 4.389992 ACAGCGTGTAATCAATGTCTCAAG 59.610 41.667 0.00 0.00 0.00 3.02
2729 2792 5.010617 GGGTTCTAACAATTTTCCAAGAGCA 59.989 40.000 0.00 0.00 0.00 4.26
2913 2976 4.713824 ACAGCAAAACCATGATGATGAG 57.286 40.909 11.20 0.00 38.99 2.90
2928 2991 4.771903 TGGAACAAGTGTTAGTACAGCAA 58.228 39.130 0.00 0.00 38.56 3.91
3171 3235 7.441157 CCGCTCTGTTACCAAATATATGAAGAA 59.559 37.037 0.00 0.00 0.00 2.52
3172 3236 6.929049 CCGCTCTGTTACCAAATATATGAAGA 59.071 38.462 0.00 0.00 0.00 2.87
3748 4039 4.026356 AGAGCAGAAACTATTGGCAACT 57.974 40.909 0.00 0.00 37.61 3.16
3787 4078 4.560035 CAGTTTCCAACGATGATGAATTGC 59.440 41.667 0.00 0.00 36.23 3.56
3948 4278 8.749499 CAAGAGAAGCAAGAAACAAAAATAGTG 58.251 33.333 0.00 0.00 0.00 2.74
4102 4534 5.244785 TCTCAGTTGTATAGTAGCCAACG 57.755 43.478 8.34 0.00 42.45 4.10
4206 4639 8.400947 GCCAGATGATATGTATTTATCGCAAAT 58.599 33.333 1.31 1.31 32.30 2.32
4223 4656 1.603802 CGTATTTTGGCGCCAGATGAT 59.396 47.619 30.75 22.06 0.00 2.45
4233 4666 2.158841 TCGCTCAGAAACGTATTTTGGC 59.841 45.455 0.00 0.00 0.00 4.52
4271 4704 6.265876 GGGGAATTGGTGTAAAAGTGACTTTA 59.734 38.462 11.43 0.00 31.99 1.85
4276 4709 3.141272 AGGGGGAATTGGTGTAAAAGTGA 59.859 43.478 0.00 0.00 0.00 3.41
4279 4712 4.020573 GGAAAGGGGGAATTGGTGTAAAAG 60.021 45.833 0.00 0.00 0.00 2.27
4313 4747 2.908916 CAATTGCAATAGCCAAAGGGG 58.091 47.619 13.39 0.00 41.13 4.79
4592 5026 8.089597 CCATACTGATTAATGGCAATTGCAATA 58.910 33.333 30.32 16.86 44.36 1.90
4593 5027 6.932400 CCATACTGATTAATGGCAATTGCAAT 59.068 34.615 30.32 23.16 44.36 3.56
4594 5028 6.097981 TCCATACTGATTAATGGCAATTGCAA 59.902 34.615 30.32 21.81 42.08 4.08
4595 5029 5.597594 TCCATACTGATTAATGGCAATTGCA 59.402 36.000 30.32 17.35 42.08 4.08
4700 5134 6.845302 TGTATGTCGTCTTAGAACGTTACAT 58.155 36.000 0.00 7.52 43.08 2.29
4741 5175 3.524826 TGATGAAGGGGATAGCTGCTAT 58.475 45.455 21.44 21.44 0.00 2.97
4926 5360 4.883585 GGGATGTACTCAATGATTGCAAGA 59.116 41.667 4.94 0.00 0.00 3.02
4935 5369 3.464907 CAGCAGAGGGATGTACTCAATG 58.535 50.000 0.00 0.00 37.43 2.82
5045 5479 6.403866 TTGAACCAAACATGTGCTTAGATT 57.596 33.333 0.00 0.00 0.00 2.40
5084 5518 1.146263 ACATTGCCTAGCCGTAGCC 59.854 57.895 0.00 0.00 41.25 3.93
5089 5523 1.953559 ATACACACATTGCCTAGCCG 58.046 50.000 0.00 0.00 0.00 5.52
5092 5526 8.902540 TTTATAGGAATACACACATTGCCTAG 57.097 34.615 0.00 0.00 30.82 3.02
5132 5566 4.019174 TCTTTTGCCATTCCTGGAATCTC 58.981 43.478 18.87 13.35 46.37 2.75
5396 5960 6.658816 AGTTGTTAAATATCACATGTGCTCCA 59.341 34.615 21.38 4.03 0.00 3.86
5528 6092 2.411409 CGCAAGCCGCATTTTGTTTATT 59.589 40.909 0.00 0.00 42.60 1.40
5560 6124 6.611642 AGAGGGAGTGTATAGCAATCTTAACA 59.388 38.462 0.00 0.00 41.49 2.41
5571 6135 7.589958 AATAGTGAACAGAGGGAGTGTATAG 57.410 40.000 0.00 0.00 0.00 1.31
5600 6164 5.760253 ACATCCGATTCAGCATAAAGTTAGG 59.240 40.000 0.00 0.00 0.00 2.69
5649 6213 8.467598 ACTACATACGTACTGAAATGAGTGAAT 58.532 33.333 0.00 0.00 0.00 2.57
5710 6274 4.773674 TCTTGTTTATTACTCCCTCCGTCA 59.226 41.667 0.00 0.00 0.00 4.35
5711 6275 5.334724 TCTTGTTTATTACTCCCTCCGTC 57.665 43.478 0.00 0.00 0.00 4.79
5776 6340 6.902341 TGATCGAGAAAACCTGAAATTCAAG 58.098 36.000 0.00 0.00 0.00 3.02
5902 6466 7.335627 AGTGCATGTTTAAAGTATGCCTAGTA 58.664 34.615 23.92 10.49 44.91 1.82
5942 6506 0.034767 AAGATGCCTGCTTAGCTGCA 60.035 50.000 20.16 20.16 40.03 4.41
5962 6526 7.893302 TCAGACTTAAATATGAAACCCCACAAT 59.107 33.333 0.00 0.00 0.00 2.71
6215 6779 3.636300 GGCATGTTATTTCTGCACCCATA 59.364 43.478 0.00 0.00 37.64 2.74
6507 7071 0.600557 CAGTCTTCTCAGCGACCTGT 59.399 55.000 0.00 0.00 40.09 4.00
6534 7098 1.669115 GCTCAGCTCAACGAGGCAA 60.669 57.895 0.00 0.00 0.00 4.52
6543 7107 3.071206 GGGTCCTCGCTCAGCTCA 61.071 66.667 0.00 0.00 0.00 4.26
6603 7167 5.511031 GCTAGACATCATGATCTGGTCACAT 60.511 44.000 20.65 8.11 40.28 3.21
6708 7273 1.135333 CTGGGCTAGAACGAACTCTCC 59.865 57.143 0.00 0.00 0.00 3.71
6717 7282 8.868103 AGTATAGGTAAATTACTGGGCTAGAAC 58.132 37.037 4.33 0.65 0.00 3.01
6892 7457 1.614996 ACGGACAATGGTTGCATTCA 58.385 45.000 0.00 0.00 0.00 2.57
6942 7507 5.760253 CCACGACCAAGATAATAGCAGAAAT 59.240 40.000 0.00 0.00 0.00 2.17
6984 7549 3.891056 AGTACTTGCACGTTAAAAGCC 57.109 42.857 0.00 0.00 0.00 4.35
6985 7550 8.938047 TTAAATAGTACTTGCACGTTAAAAGC 57.062 30.769 0.00 0.00 0.00 3.51
7023 7589 6.826741 TGTTGAAACCTTAACTATGGGCTATC 59.173 38.462 0.00 0.00 0.00 2.08
7147 7727 0.895559 CTGTCCAAGTTGGCCCTTCC 60.896 60.000 17.68 1.42 37.47 3.46
7162 7742 4.732285 TCTTCGTTTTGCATCTTCTGTC 57.268 40.909 0.00 0.00 0.00 3.51
7201 7781 7.264221 ACTACATCTCTAGTTTGCATCTTCTG 58.736 38.462 0.00 0.00 0.00 3.02
7225 7805 4.597079 TGTCTTCGTTTTGCATCTTCAAC 58.403 39.130 0.00 0.00 0.00 3.18
7226 7806 4.891627 TGTCTTCGTTTTGCATCTTCAA 57.108 36.364 0.00 0.00 0.00 2.69
7227 7807 4.891627 TTGTCTTCGTTTTGCATCTTCA 57.108 36.364 0.00 0.00 0.00 3.02
7228 7808 5.971202 TCTTTTGTCTTCGTTTTGCATCTTC 59.029 36.000 0.00 0.00 0.00 2.87
7229 7809 5.890334 TCTTTTGTCTTCGTTTTGCATCTT 58.110 33.333 0.00 0.00 0.00 2.40
7230 7810 5.066505 ACTCTTTTGTCTTCGTTTTGCATCT 59.933 36.000 0.00 0.00 0.00 2.90
7232 7812 5.248870 ACTCTTTTGTCTTCGTTTTGCAT 57.751 34.783 0.00 0.00 0.00 3.96
7236 7816 6.596497 TGGAGTTACTCTTTTGTCTTCGTTTT 59.404 34.615 12.41 0.00 0.00 2.43
7237 7817 6.110707 TGGAGTTACTCTTTTGTCTTCGTTT 58.889 36.000 12.41 0.00 0.00 3.60
7238 7818 5.667466 TGGAGTTACTCTTTTGTCTTCGTT 58.333 37.500 12.41 0.00 0.00 3.85
7239 7819 5.272283 TGGAGTTACTCTTTTGTCTTCGT 57.728 39.130 12.41 0.00 0.00 3.85
7240 7820 5.522460 TGTTGGAGTTACTCTTTTGTCTTCG 59.478 40.000 12.41 0.00 0.00 3.79
7241 7821 6.761714 TCTGTTGGAGTTACTCTTTTGTCTTC 59.238 38.462 12.41 0.00 0.00 2.87
7242 7822 6.650120 TCTGTTGGAGTTACTCTTTTGTCTT 58.350 36.000 12.41 0.00 0.00 3.01
7243 7823 6.235231 TCTGTTGGAGTTACTCTTTTGTCT 57.765 37.500 12.41 0.00 0.00 3.41
7244 7824 6.761714 TCTTCTGTTGGAGTTACTCTTTTGTC 59.238 38.462 12.41 0.00 0.00 3.18
7245 7825 6.650120 TCTTCTGTTGGAGTTACTCTTTTGT 58.350 36.000 12.41 0.00 0.00 2.83
7246 7826 7.227512 ACATCTTCTGTTGGAGTTACTCTTTTG 59.772 37.037 12.41 0.37 32.90 2.44
7247 7827 7.283329 ACATCTTCTGTTGGAGTTACTCTTTT 58.717 34.615 12.41 0.00 32.90 2.27
7248 7828 6.831976 ACATCTTCTGTTGGAGTTACTCTTT 58.168 36.000 12.41 0.00 32.90 2.52
7249 7829 6.426646 ACATCTTCTGTTGGAGTTACTCTT 57.573 37.500 12.41 0.00 32.90 2.85
7250 7830 7.540474 TTACATCTTCTGTTGGAGTTACTCT 57.460 36.000 12.41 0.00 39.39 3.24
7251 7831 8.496751 GTTTTACATCTTCTGTTGGAGTTACTC 58.503 37.037 3.36 3.36 39.39 2.59
7252 7832 8.211629 AGTTTTACATCTTCTGTTGGAGTTACT 58.788 33.333 0.00 0.00 39.39 2.24
7253 7833 8.283291 CAGTTTTACATCTTCTGTTGGAGTTAC 58.717 37.037 0.00 0.00 39.39 2.50
7254 7834 7.041372 GCAGTTTTACATCTTCTGTTGGAGTTA 60.041 37.037 0.00 0.00 39.39 2.24
7255 7835 6.238759 GCAGTTTTACATCTTCTGTTGGAGTT 60.239 38.462 0.00 0.00 39.39 3.01
7256 7836 5.239525 GCAGTTTTACATCTTCTGTTGGAGT 59.760 40.000 0.00 0.00 39.39 3.85
7257 7837 5.335191 GGCAGTTTTACATCTTCTGTTGGAG 60.335 44.000 0.00 0.00 39.39 3.86
7258 7838 4.518970 GGCAGTTTTACATCTTCTGTTGGA 59.481 41.667 0.00 0.00 39.39 3.53
7259 7839 4.613622 CGGCAGTTTTACATCTTCTGTTGG 60.614 45.833 0.00 0.00 39.39 3.77
7260 7840 4.466828 CGGCAGTTTTACATCTTCTGTTG 58.533 43.478 0.00 0.00 39.39 3.33
7261 7841 3.058224 GCGGCAGTTTTACATCTTCTGTT 60.058 43.478 0.00 0.00 39.39 3.16
7262 7842 2.484264 GCGGCAGTTTTACATCTTCTGT 59.516 45.455 0.00 0.00 42.13 3.41
7263 7843 2.474526 CGCGGCAGTTTTACATCTTCTG 60.475 50.000 0.00 0.00 0.00 3.02
7264 7844 1.732259 CGCGGCAGTTTTACATCTTCT 59.268 47.619 0.00 0.00 0.00 2.85
7265 7845 1.790481 GCGCGGCAGTTTTACATCTTC 60.790 52.381 8.83 0.00 0.00 2.87
7266 7846 0.168128 GCGCGGCAGTTTTACATCTT 59.832 50.000 8.83 0.00 0.00 2.40
7267 7847 1.794222 GCGCGGCAGTTTTACATCT 59.206 52.632 8.83 0.00 0.00 2.90
7268 7848 1.580132 CGCGCGGCAGTTTTACATC 60.580 57.895 24.84 0.00 0.00 3.06
7269 7849 1.366111 ATCGCGCGGCAGTTTTACAT 61.366 50.000 31.69 8.88 0.00 2.29
7270 7850 1.570347 AATCGCGCGGCAGTTTTACA 61.570 50.000 31.69 6.44 0.00 2.41
7271 7851 1.125847 CAATCGCGCGGCAGTTTTAC 61.126 55.000 31.69 0.00 0.00 2.01
7272 7852 1.133664 CAATCGCGCGGCAGTTTTA 59.866 52.632 31.69 8.20 0.00 1.52
7273 7853 2.126888 CAATCGCGCGGCAGTTTT 60.127 55.556 31.69 11.18 0.00 2.43
7274 7854 4.759096 GCAATCGCGCGGCAGTTT 62.759 61.111 31.69 12.99 0.00 2.66
7279 7859 3.375500 TAAACAGCAATCGCGCGGC 62.375 57.895 31.69 25.11 45.49 6.53
7280 7860 1.296867 CTAAACAGCAATCGCGCGG 60.297 57.895 31.69 15.59 45.49 6.46
7281 7861 1.929714 GCTAAACAGCAATCGCGCG 60.930 57.895 26.76 26.76 45.49 6.86
7282 7862 0.858961 CAGCTAAACAGCAATCGCGC 60.859 55.000 0.00 0.00 45.49 6.86
7283 7863 0.858961 GCAGCTAAACAGCAATCGCG 60.859 55.000 0.00 0.00 45.49 5.87
7284 7864 0.449388 AGCAGCTAAACAGCAATCGC 59.551 50.000 0.00 0.00 37.25 4.58
7285 7865 1.792993 GCAGCAGCTAAACAGCAATCG 60.793 52.381 0.00 0.00 37.91 3.34
7288 7868 1.526575 GGGCAGCAGCTAAACAGCAA 61.527 55.000 0.00 0.00 41.70 3.91
7470 9990 4.074970 AGAGGACGCAATTTGAGTGATTT 58.925 39.130 10.63 0.00 28.29 2.17
7481 10002 0.598065 GGCAACAAAGAGGACGCAAT 59.402 50.000 0.00 0.00 0.00 3.56
7577 10102 0.179059 TGCTTCTGGTTGAGTTCGCA 60.179 50.000 0.00 0.00 0.00 5.10
7586 10111 4.406456 TGGTAATGAATGTGCTTCTGGTT 58.594 39.130 0.00 0.00 34.75 3.67
7605 10130 3.092511 AGCGGCATGGGAGATGGT 61.093 61.111 1.45 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.