Multiple sequence alignment - TraesCS5B01G165100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G165100 chr5B 100.000 5166 0 0 1 5166 305058108 305052943 0.000000e+00 9540.0
1 TraesCS5B01G165100 chr5B 92.776 263 19 0 4698 4960 27505390 27505128 1.050000e-101 381.0
2 TraesCS5B01G165100 chr5B 92.748 262 19 0 4698 4959 27488669 27488408 3.780000e-101 379.0
3 TraesCS5B01G165100 chr5B 74.432 176 41 3 239 412 521210787 521210614 7.180000e-09 73.1
4 TraesCS5B01G165100 chr5A 95.014 2106 75 12 688 2784 358051585 358049501 0.000000e+00 3280.0
5 TraesCS5B01G165100 chr5A 95.583 2015 71 7 2693 4695 358049414 358047406 0.000000e+00 3212.0
6 TraesCS5B01G165100 chr5A 91.391 151 1 7 4983 5121 358047199 358047049 4.080000e-46 196.0
7 TraesCS5B01G165100 chr5A 77.301 163 35 2 269 430 378432543 378432382 1.530000e-15 95.3
8 TraesCS5B01G165100 chr5D 95.635 2016 66 9 2693 4695 269342209 269340203 0.000000e+00 3216.0
9 TraesCS5B01G165100 chr5D 93.585 2042 65 13 752 2784 269344191 269342207 0.000000e+00 2985.0
10 TraesCS5B01G165100 chr5D 90.330 455 41 3 1 453 269344764 269344311 1.240000e-165 593.0
11 TraesCS5B01G165100 chr5D 89.362 141 2 5 4956 5085 269340079 269339941 1.150000e-36 165.0
12 TraesCS5B01G165100 chr5D 91.954 87 5 2 682 767 269344312 269344227 2.530000e-23 121.0
13 TraesCS5B01G165100 chr4A 89.594 1749 148 18 2474 4195 658224953 658223212 0.000000e+00 2191.0
14 TraesCS5B01G165100 chr4A 88.991 1735 151 21 2513 4217 657889102 657890826 0.000000e+00 2109.0
15 TraesCS5B01G165100 chr4A 87.452 526 53 7 1793 2306 657888223 657888747 1.240000e-165 593.0
16 TraesCS5B01G165100 chr4A 86.420 486 43 9 1863 2334 658225431 658224955 1.280000e-140 510.0
17 TraesCS5B01G165100 chr4A 85.443 158 14 6 4353 4505 658223146 658222993 6.930000e-34 156.0
18 TraesCS5B01G165100 chr4A 80.526 190 16 9 1277 1460 657887748 657887922 5.430000e-25 126.0
19 TraesCS5B01G165100 chr4A 81.457 151 15 6 1543 1681 658225767 658225618 1.520000e-20 111.0
20 TraesCS5B01G165100 chr7D 89.330 1762 152 21 2474 4205 45656213 45654458 0.000000e+00 2180.0
21 TraesCS5B01G165100 chr7D 84.628 592 65 13 1756 2334 45656793 45656215 2.700000e-157 566.0
22 TraesCS5B01G165100 chr7D 90.614 277 25 1 4687 4963 568274410 568274135 2.940000e-97 366.0
23 TraesCS5B01G165100 chr7D 89.147 258 25 3 447 701 176959067 176959324 8.350000e-83 318.0
24 TraesCS5B01G165100 chr7D 89.744 234 21 1 2053 2283 45570444 45570677 3.910000e-76 296.0
25 TraesCS5B01G165100 chr7D 80.303 264 40 7 1756 2007 45570161 45570424 6.830000e-44 189.0
26 TraesCS5B01G165100 chr7D 83.696 184 15 9 1277 1460 45569615 45569783 5.350000e-35 159.0
27 TraesCS5B01G165100 chr7D 78.924 223 31 9 1526 1735 45569774 45569993 2.510000e-28 137.0
28 TraesCS5B01G165100 chr7D 85.577 104 11 3 1028 1129 45569510 45569611 7.070000e-19 106.0
29 TraesCS5B01G165100 chr7D 76.786 112 24 2 212 322 2137343 2137453 1.550000e-05 62.1
30 TraesCS5B01G165100 chr7A 88.471 1700 155 19 2474 4147 47796861 47795177 0.000000e+00 2015.0
31 TraesCS5B01G165100 chr7A 87.721 1751 146 31 2474 4195 47695880 47697590 0.000000e+00 1978.0
32 TraesCS5B01G165100 chr7A 84.486 593 66 18 1756 2334 47797443 47796863 3.490000e-156 562.0
33 TraesCS5B01G165100 chr7A 83.926 591 72 15 1758 2334 47695297 47695878 1.270000e-150 544.0
34 TraesCS5B01G165100 chr7A 87.952 83 6 3 53 133 271752769 271752849 1.530000e-15 95.3
35 TraesCS5B01G165100 chr2B 87.078 503 52 10 1843 2334 275457195 275456695 1.620000e-154 556.0
36 TraesCS5B01G165100 chr2B 89.423 104 11 0 2474 2577 275456693 275456590 1.170000e-26 132.0
37 TraesCS5B01G165100 chr2B 85.366 82 10 2 52 132 619484657 619484737 3.310000e-12 84.2
38 TraesCS5B01G165100 chr2B 86.667 75 8 2 250 323 144426869 144426942 1.190000e-11 82.4
39 TraesCS5B01G165100 chr7B 92.830 265 19 0 4695 4959 711065484 711065748 8.110000e-103 385.0
40 TraesCS5B01G165100 chr7B 89.583 240 24 1 449 687 414077419 414077180 2.340000e-78 303.0
41 TraesCS5B01G165100 chr6D 92.803 264 18 1 4698 4961 199150251 199149989 1.050000e-101 381.0
42 TraesCS5B01G165100 chr6D 89.627 241 21 4 448 686 91526341 91526103 2.340000e-78 303.0
43 TraesCS5B01G165100 chr6D 86.905 84 6 5 52 133 459104483 459104403 7.120000e-14 89.8
44 TraesCS5B01G165100 chr6D 87.500 72 7 2 254 324 14482911 14482981 1.190000e-11 82.4
45 TraesCS5B01G165100 chr3D 92.395 263 20 0 4698 4960 67439759 67439497 4.880000e-100 375.0
46 TraesCS5B01G165100 chr3D 92.105 266 20 1 4695 4960 511669032 511669296 1.760000e-99 374.0
47 TraesCS5B01G165100 chr3D 90.000 240 23 1 449 687 158720730 158720969 5.020000e-80 309.0
48 TraesCS5B01G165100 chr3D 89.167 240 25 1 449 687 356407168 356407407 1.090000e-76 298.0
49 TraesCS5B01G165100 chr3D 87.069 116 12 2 4351 4465 566397754 566397867 1.510000e-25 128.0
50 TraesCS5B01G165100 chr3D 78.146 151 26 5 4400 4544 566112217 566112366 7.120000e-14 89.8
51 TraesCS5B01G165100 chr3D 90.909 66 6 0 68 133 574705888 574705953 7.120000e-14 89.8
52 TraesCS5B01G165100 chr3A 92.395 263 20 0 4698 4960 582345389 582345127 4.880000e-100 375.0
53 TraesCS5B01G165100 chr3A 85.227 88 10 1 3990 4074 700962791 700962704 2.560000e-13 87.9
54 TraesCS5B01G165100 chr4B 92.075 265 21 0 4698 4962 82002541 82002277 1.760000e-99 374.0
55 TraesCS5B01G165100 chr1D 90.083 242 23 1 446 686 276793538 276793779 3.880000e-81 313.0
56 TraesCS5B01G165100 chr1D 89.167 240 25 1 449 687 235713220 235712981 1.090000e-76 298.0
57 TraesCS5B01G165100 chr1D 87.952 83 8 2 52 133 453327137 453327056 4.260000e-16 97.1
58 TraesCS5B01G165100 chr2D 89.583 240 24 1 449 687 444860816 444861055 2.340000e-78 303.0
59 TraesCS5B01G165100 chr2D 88.142 253 27 3 447 696 200810101 200810353 1.090000e-76 298.0
60 TraesCS5B01G165100 chr2D 87.952 83 8 2 52 133 134782820 134782739 4.260000e-16 97.1
61 TraesCS5B01G165100 chr2D 90.909 66 6 0 68 133 20371095 20371030 7.120000e-14 89.8
62 TraesCS5B01G165100 chr3B 87.705 122 12 2 4351 4471 755606978 755606859 6.980000e-29 139.0
63 TraesCS5B01G165100 chr3B 79.688 192 29 7 4360 4544 754723117 754722929 4.200000e-26 130.0
64 TraesCS5B01G165100 chr3B 86.179 123 13 3 4351 4471 754772735 754772615 4.200000e-26 130.0
65 TraesCS5B01G165100 chr3B 91.111 45 1 1 4026 4067 754772978 754772934 2.010000e-04 58.4
66 TraesCS5B01G165100 chr6A 72.162 370 92 8 11 372 22735520 22735886 9.150000e-18 102.0
67 TraesCS5B01G165100 chr6A 79.545 132 21 6 5 133 54415519 54415647 7.120000e-14 89.8
68 TraesCS5B01G165100 chr4D 82.353 102 16 2 270 370 379342062 379342162 2.560000e-13 87.9
69 TraesCS5B01G165100 chr1B 78.862 123 26 0 250 372 514371786 514371908 3.310000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G165100 chr5B 305052943 305058108 5165 True 9540.000000 9540 100.000000 1 5166 1 chr5B.!!$R3 5165
1 TraesCS5B01G165100 chr5A 358047049 358051585 4536 True 2229.333333 3280 93.996000 688 5121 3 chr5A.!!$R2 4433
2 TraesCS5B01G165100 chr5D 269339941 269344764 4823 True 1416.000000 3216 92.173200 1 5085 5 chr5D.!!$R1 5084
3 TraesCS5B01G165100 chr4A 657887748 657890826 3078 False 942.666667 2109 85.656333 1277 4217 3 chr4A.!!$F1 2940
4 TraesCS5B01G165100 chr4A 658222993 658225767 2774 True 742.000000 2191 85.728500 1543 4505 4 chr4A.!!$R1 2962
5 TraesCS5B01G165100 chr7D 45654458 45656793 2335 True 1373.000000 2180 86.979000 1756 4205 2 chr7D.!!$R2 2449
6 TraesCS5B01G165100 chr7A 47795177 47797443 2266 True 1288.500000 2015 86.478500 1756 4147 2 chr7A.!!$R1 2391
7 TraesCS5B01G165100 chr7A 47695297 47697590 2293 False 1261.000000 1978 85.823500 1758 4195 2 chr7A.!!$F2 2437
8 TraesCS5B01G165100 chr2B 275456590 275457195 605 True 344.000000 556 88.250500 1843 2577 2 chr2B.!!$R1 734

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 96 0.603975 AGGCACGAAAGACCTTCTGC 60.604 55.0 0.00 0.00 37.83 4.26 F
826 881 0.979187 TAAACCCCCTACAGGCCTCG 60.979 60.0 0.00 0.52 0.00 4.63 F
2369 2550 0.601046 CTGTTTCTGGCTCGAGTGCA 60.601 55.0 15.13 2.47 34.04 4.57 F
3240 3870 0.036952 TTGCTGCTACCTCACTCTGC 60.037 55.0 0.00 0.00 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1520 1590 0.315251 CTTCCTGTGCTCACGAGACA 59.685 55.0 0.00 0.0 0.00 3.41 R
2423 2604 0.679640 TGGTAAGCCCTGAAATGCCG 60.680 55.0 0.00 0.0 0.00 5.69 R
3848 4494 0.179084 CCATCTGTGATAACCGCCGT 60.179 55.0 0.00 0.0 0.00 5.68 R
4938 5620 0.032813 ACTCCCTCCGTCCGGATTTA 60.033 55.0 7.81 0.0 44.24 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 6.586344 TGAGACCATTTAGATTGGATGACTC 58.414 40.000 0.00 0.00 37.69 3.36
90 91 1.640917 TTAGGAGGCACGAAAGACCT 58.359 50.000 0.00 0.00 42.37 3.85
95 96 0.603975 AGGCACGAAAGACCTTCTGC 60.604 55.000 0.00 0.00 37.83 4.26
121 122 6.384015 TGCTATCAAGAAAAGGTATGGAGAGA 59.616 38.462 0.00 0.00 0.00 3.10
143 144 2.426842 GGGTCTCCCAATTCCTCAAG 57.573 55.000 0.00 0.00 44.65 3.02
145 146 2.356227 GGGTCTCCCAATTCCTCAAGAC 60.356 54.545 0.00 0.00 44.65 3.01
147 148 1.555075 TCTCCCAATTCCTCAAGACGG 59.445 52.381 0.00 0.00 0.00 4.79
185 186 6.769512 AGTTTCTTACCATTGAAGAGCACTA 58.230 36.000 0.00 0.00 34.50 2.74
187 188 7.885399 AGTTTCTTACCATTGAAGAGCACTAAT 59.115 33.333 0.00 0.00 34.50 1.73
188 189 8.515414 GTTTCTTACCATTGAAGAGCACTAATT 58.485 33.333 0.00 0.00 34.50 1.40
189 190 8.635765 TTCTTACCATTGAAGAGCACTAATTT 57.364 30.769 0.00 0.00 34.50 1.82
231 232 4.644685 ACCCATTACAATATGCACCAACTC 59.355 41.667 0.00 0.00 0.00 3.01
232 233 4.644234 CCCATTACAATATGCACCAACTCA 59.356 41.667 0.00 0.00 0.00 3.41
234 235 6.183360 CCCATTACAATATGCACCAACTCATT 60.183 38.462 0.00 0.00 0.00 2.57
260 262 4.806640 AAACCCAGCCTGAACATTATTG 57.193 40.909 0.00 0.00 0.00 1.90
265 267 4.427312 CCAGCCTGAACATTATTGCTTTC 58.573 43.478 0.00 0.00 0.00 2.62
281 283 4.973396 TGCTTTCAAATAATCGCACTCAG 58.027 39.130 0.00 0.00 0.00 3.35
284 286 4.864916 TTCAAATAATCGCACTCAGCTC 57.135 40.909 0.00 0.00 42.61 4.09
313 315 8.512138 TCATATGCTTTCATCATATCAAGCTTG 58.488 33.333 20.81 20.81 41.89 4.01
322 324 2.877097 TATCAAGCTTGAGGGCACAA 57.123 45.000 31.14 8.89 41.08 3.33
346 348 9.590451 CAATGCCTATTTCTCATTATTGTGTTT 57.410 29.630 0.00 0.00 0.00 2.83
378 380 1.742761 TGAAGGCACTCATTAGCTGC 58.257 50.000 0.00 0.00 38.49 5.25
407 409 6.025749 TGTTGTCAGTAATGAGTCTACCTG 57.974 41.667 0.00 0.00 0.00 4.00
408 410 5.773176 TGTTGTCAGTAATGAGTCTACCTGA 59.227 40.000 0.00 0.00 0.00 3.86
409 411 6.071896 TGTTGTCAGTAATGAGTCTACCTGAG 60.072 42.308 0.00 0.00 0.00 3.35
421 423 1.066303 CTACCTGAGACGATGGCAGAC 59.934 57.143 0.00 0.00 0.00 3.51
444 446 6.106673 ACTGTTCCTCTCGTATAATGTTTGG 58.893 40.000 0.00 0.00 0.00 3.28
445 447 4.873827 TGTTCCTCTCGTATAATGTTTGGC 59.126 41.667 0.00 0.00 0.00 4.52
450 452 5.462398 CCTCTCGTATAATGTTTGGCAGTAC 59.538 44.000 0.00 0.00 29.93 2.73
451 453 6.216801 TCTCGTATAATGTTTGGCAGTACT 57.783 37.500 0.00 0.00 29.93 2.73
452 454 7.337480 TCTCGTATAATGTTTGGCAGTACTA 57.663 36.000 0.00 0.00 29.93 1.82
453 455 7.774134 TCTCGTATAATGTTTGGCAGTACTAA 58.226 34.615 0.00 0.00 29.93 2.24
454 456 7.703621 TCTCGTATAATGTTTGGCAGTACTAAC 59.296 37.037 0.00 0.00 29.93 2.34
455 457 7.549839 TCGTATAATGTTTGGCAGTACTAACT 58.450 34.615 0.00 0.00 35.91 2.24
456 458 7.703621 TCGTATAATGTTTGGCAGTACTAACTC 59.296 37.037 0.00 0.00 31.97 3.01
457 459 7.042925 CGTATAATGTTTGGCAGTACTAACTCC 60.043 40.741 0.00 0.00 31.97 3.85
458 460 3.034721 TGTTTGGCAGTACTAACTCCG 57.965 47.619 0.00 0.00 31.97 4.63
459 461 2.366266 TGTTTGGCAGTACTAACTCCGT 59.634 45.455 0.00 0.00 31.97 4.69
460 462 2.991866 GTTTGGCAGTACTAACTCCGTC 59.008 50.000 0.00 0.00 31.97 4.79
461 463 1.180029 TGGCAGTACTAACTCCGTCC 58.820 55.000 0.00 0.00 31.97 4.79
462 464 1.272313 TGGCAGTACTAACTCCGTCCT 60.272 52.381 0.00 0.00 31.97 3.85
463 465 2.025981 TGGCAGTACTAACTCCGTCCTA 60.026 50.000 0.00 0.00 31.97 2.94
464 466 2.617774 GGCAGTACTAACTCCGTCCTAG 59.382 54.545 0.00 0.00 31.97 3.02
465 467 3.277715 GCAGTACTAACTCCGTCCTAGT 58.722 50.000 0.00 0.00 31.97 2.57
466 468 3.693578 GCAGTACTAACTCCGTCCTAGTT 59.306 47.826 0.00 0.00 40.25 2.24
467 469 4.201901 GCAGTACTAACTCCGTCCTAGTTC 60.202 50.000 0.00 0.00 38.18 3.01
468 470 4.940046 CAGTACTAACTCCGTCCTAGTTCA 59.060 45.833 0.00 0.00 38.18 3.18
469 471 5.589452 CAGTACTAACTCCGTCCTAGTTCAT 59.411 44.000 0.00 0.00 38.18 2.57
470 472 6.095160 CAGTACTAACTCCGTCCTAGTTCATT 59.905 42.308 0.00 0.00 38.18 2.57
471 473 7.281774 CAGTACTAACTCCGTCCTAGTTCATTA 59.718 40.741 0.00 0.00 38.18 1.90
472 474 6.696441 ACTAACTCCGTCCTAGTTCATTAG 57.304 41.667 0.00 0.00 38.18 1.73
473 475 6.186234 ACTAACTCCGTCCTAGTTCATTAGT 58.814 40.000 0.00 0.00 38.18 2.24
474 476 5.579564 AACTCCGTCCTAGTTCATTAGTC 57.420 43.478 0.00 0.00 31.56 2.59
475 477 3.952967 ACTCCGTCCTAGTTCATTAGTCC 59.047 47.826 0.00 0.00 0.00 3.85
476 478 3.294214 TCCGTCCTAGTTCATTAGTCCC 58.706 50.000 0.00 0.00 0.00 4.46
477 479 2.364647 CCGTCCTAGTTCATTAGTCCCC 59.635 54.545 0.00 0.00 0.00 4.81
478 480 3.297736 CGTCCTAGTTCATTAGTCCCCT 58.702 50.000 0.00 0.00 0.00 4.79
479 481 3.705072 CGTCCTAGTTCATTAGTCCCCTT 59.295 47.826 0.00 0.00 0.00 3.95
480 482 4.161754 CGTCCTAGTTCATTAGTCCCCTTT 59.838 45.833 0.00 0.00 0.00 3.11
481 483 5.429130 GTCCTAGTTCATTAGTCCCCTTTG 58.571 45.833 0.00 0.00 0.00 2.77
482 484 5.045797 GTCCTAGTTCATTAGTCCCCTTTGT 60.046 44.000 0.00 0.00 0.00 2.83
483 485 6.155737 GTCCTAGTTCATTAGTCCCCTTTGTA 59.844 42.308 0.00 0.00 0.00 2.41
484 486 6.731919 TCCTAGTTCATTAGTCCCCTTTGTAA 59.268 38.462 0.00 0.00 0.00 2.41
485 487 7.404980 TCCTAGTTCATTAGTCCCCTTTGTAAT 59.595 37.037 0.00 0.00 0.00 1.89
486 488 8.053355 CCTAGTTCATTAGTCCCCTTTGTAATT 58.947 37.037 0.00 0.00 0.00 1.40
487 489 9.462606 CTAGTTCATTAGTCCCCTTTGTAATTT 57.537 33.333 0.00 0.00 0.00 1.82
488 490 8.122472 AGTTCATTAGTCCCCTTTGTAATTTG 57.878 34.615 0.00 0.00 0.00 2.32
489 491 7.728532 AGTTCATTAGTCCCCTTTGTAATTTGT 59.271 33.333 0.00 0.00 0.00 2.83
490 492 7.461182 TCATTAGTCCCCTTTGTAATTTGTG 57.539 36.000 0.00 0.00 0.00 3.33
491 493 7.007723 TCATTAGTCCCCTTTGTAATTTGTGT 58.992 34.615 0.00 0.00 0.00 3.72
492 494 6.887626 TTAGTCCCCTTTGTAATTTGTGTC 57.112 37.500 0.00 0.00 0.00 3.67
493 495 4.798882 AGTCCCCTTTGTAATTTGTGTCA 58.201 39.130 0.00 0.00 0.00 3.58
494 496 5.205056 AGTCCCCTTTGTAATTTGTGTCAA 58.795 37.500 0.00 0.00 0.00 3.18
495 497 5.659079 AGTCCCCTTTGTAATTTGTGTCAAA 59.341 36.000 0.00 0.00 0.00 2.69
496 498 6.326323 AGTCCCCTTTGTAATTTGTGTCAAAT 59.674 34.615 2.42 2.42 31.08 2.32
497 499 6.989759 GTCCCCTTTGTAATTTGTGTCAAATT 59.010 34.615 19.42 19.42 34.55 1.82
498 500 7.497579 GTCCCCTTTGTAATTTGTGTCAAATTT 59.502 33.333 20.29 9.17 32.64 1.82
499 501 8.049721 TCCCCTTTGTAATTTGTGTCAAATTTT 58.950 29.630 20.29 6.18 32.64 1.82
500 502 8.127954 CCCCTTTGTAATTTGTGTCAAATTTTG 58.872 33.333 20.29 2.59 32.64 2.44
501 503 8.887717 CCCTTTGTAATTTGTGTCAAATTTTGA 58.112 29.630 20.29 7.74 37.33 2.69
532 534 9.979578 AGATTTAACTAACAAAATGTCAATGCA 57.020 25.926 0.00 0.00 0.00 3.96
535 537 9.539825 TTTAACTAACAAAATGTCAATGCATGT 57.460 25.926 0.00 0.00 0.00 3.21
536 538 7.642071 AACTAACAAAATGTCAATGCATGTC 57.358 32.000 0.00 0.00 0.00 3.06
537 539 6.747125 ACTAACAAAATGTCAATGCATGTCA 58.253 32.000 0.00 0.14 0.00 3.58
538 540 7.208777 ACTAACAAAATGTCAATGCATGTCAA 58.791 30.769 0.00 0.00 30.91 3.18
539 541 5.910637 ACAAAATGTCAATGCATGTCAAC 57.089 34.783 0.00 0.00 30.91 3.18
540 542 5.358090 ACAAAATGTCAATGCATGTCAACA 58.642 33.333 0.00 2.99 30.91 3.33
541 543 5.816258 ACAAAATGTCAATGCATGTCAACAA 59.184 32.000 0.00 0.00 30.91 2.83
542 544 6.315642 ACAAAATGTCAATGCATGTCAACAAA 59.684 30.769 0.00 0.00 30.91 2.83
543 545 6.922247 AAATGTCAATGCATGTCAACAAAA 57.078 29.167 0.00 0.00 30.91 2.44
544 546 6.922247 AATGTCAATGCATGTCAACAAAAA 57.078 29.167 0.00 0.00 30.91 1.94
545 547 7.499321 AATGTCAATGCATGTCAACAAAAAT 57.501 28.000 0.00 0.00 30.91 1.82
546 548 6.922247 TGTCAATGCATGTCAACAAAAATT 57.078 29.167 0.00 0.00 0.00 1.82
547 549 8.604640 ATGTCAATGCATGTCAACAAAAATTA 57.395 26.923 0.00 0.00 30.91 1.40
548 550 7.849496 TGTCAATGCATGTCAACAAAAATTAC 58.151 30.769 0.00 0.00 0.00 1.89
549 551 7.493645 TGTCAATGCATGTCAACAAAAATTACA 59.506 29.630 0.00 0.00 0.00 2.41
550 552 8.005466 GTCAATGCATGTCAACAAAAATTACAG 58.995 33.333 0.00 0.00 0.00 2.74
551 553 5.903764 TGCATGTCAACAAAAATTACAGC 57.096 34.783 0.00 0.00 0.00 4.40
552 554 4.443725 TGCATGTCAACAAAAATTACAGCG 59.556 37.500 0.00 0.00 0.00 5.18
553 555 4.444056 GCATGTCAACAAAAATTACAGCGT 59.556 37.500 0.00 0.00 0.00 5.07
554 556 5.051106 GCATGTCAACAAAAATTACAGCGTT 60.051 36.000 0.00 0.00 0.00 4.84
555 557 5.940603 TGTCAACAAAAATTACAGCGTTG 57.059 34.783 0.00 0.00 36.05 4.10
556 558 4.800993 TGTCAACAAAAATTACAGCGTTGG 59.199 37.500 3.74 0.00 35.57 3.77
557 559 5.038033 GTCAACAAAAATTACAGCGTTGGA 58.962 37.500 3.74 0.00 35.57 3.53
558 560 5.689961 GTCAACAAAAATTACAGCGTTGGAT 59.310 36.000 3.74 0.00 35.57 3.41
559 561 6.200097 GTCAACAAAAATTACAGCGTTGGATT 59.800 34.615 3.74 0.83 35.57 3.01
560 562 6.419413 TCAACAAAAATTACAGCGTTGGATTC 59.581 34.615 3.74 0.00 35.57 2.52
561 563 4.915085 ACAAAAATTACAGCGTTGGATTCG 59.085 37.500 3.74 0.14 0.00 3.34
562 564 4.759516 AAAATTACAGCGTTGGATTCGT 57.240 36.364 3.74 0.00 0.00 3.85
563 565 5.866335 AAAATTACAGCGTTGGATTCGTA 57.134 34.783 3.74 0.00 0.00 3.43
564 566 6.431198 AAAATTACAGCGTTGGATTCGTAT 57.569 33.333 3.74 0.00 0.00 3.06
565 567 6.431198 AAATTACAGCGTTGGATTCGTATT 57.569 33.333 3.74 0.00 0.00 1.89
566 568 6.431198 AATTACAGCGTTGGATTCGTATTT 57.569 33.333 3.74 0.00 0.00 1.40
567 569 3.740044 ACAGCGTTGGATTCGTATTTG 57.260 42.857 3.74 0.00 0.00 2.32
568 570 3.331150 ACAGCGTTGGATTCGTATTTGA 58.669 40.909 3.74 0.00 0.00 2.69
569 571 3.749088 ACAGCGTTGGATTCGTATTTGAA 59.251 39.130 3.74 0.00 0.00 2.69
570 572 4.088648 CAGCGTTGGATTCGTATTTGAAC 58.911 43.478 0.00 0.00 0.00 3.18
571 573 3.749088 AGCGTTGGATTCGTATTTGAACA 59.251 39.130 0.00 0.00 0.00 3.18
572 574 4.394920 AGCGTTGGATTCGTATTTGAACAT 59.605 37.500 0.00 0.00 0.00 2.71
573 575 5.583061 AGCGTTGGATTCGTATTTGAACATA 59.417 36.000 0.00 0.00 0.00 2.29
574 576 5.901884 GCGTTGGATTCGTATTTGAACATAG 59.098 40.000 0.00 0.00 0.00 2.23
575 577 5.901884 CGTTGGATTCGTATTTGAACATAGC 59.098 40.000 0.00 0.00 0.00 2.97
576 578 6.238103 CGTTGGATTCGTATTTGAACATAGCT 60.238 38.462 0.00 0.00 0.00 3.32
577 579 7.472543 GTTGGATTCGTATTTGAACATAGCTT 58.527 34.615 0.00 0.00 0.00 3.74
578 580 7.246674 TGGATTCGTATTTGAACATAGCTTC 57.753 36.000 0.00 0.00 0.00 3.86
579 581 6.821160 TGGATTCGTATTTGAACATAGCTTCA 59.179 34.615 0.00 0.00 0.00 3.02
580 582 7.335673 TGGATTCGTATTTGAACATAGCTTCAA 59.664 33.333 0.00 0.00 38.18 2.69
581 583 8.345565 GGATTCGTATTTGAACATAGCTTCAAT 58.654 33.333 0.00 0.00 39.37 2.57
582 584 9.162793 GATTCGTATTTGAACATAGCTTCAATG 57.837 33.333 0.00 0.00 39.37 2.82
583 585 7.841915 TCGTATTTGAACATAGCTTCAATGA 57.158 32.000 1.94 0.00 39.37 2.57
584 586 8.437360 TCGTATTTGAACATAGCTTCAATGAT 57.563 30.769 1.94 0.00 39.37 2.45
585 587 9.541143 TCGTATTTGAACATAGCTTCAATGATA 57.459 29.630 1.94 0.00 39.37 2.15
599 601 9.807649 AGCTTCAATGATATAATTTTTGGTGAC 57.192 29.630 0.00 0.00 0.00 3.67
600 602 9.585099 GCTTCAATGATATAATTTTTGGTGACA 57.415 29.630 0.00 0.00 39.83 3.58
603 605 9.531942 TCAATGATATAATTTTTGGTGACATGC 57.468 29.630 0.00 0.00 42.32 4.06
604 606 9.315525 CAATGATATAATTTTTGGTGACATGCA 57.684 29.630 0.00 0.00 42.32 3.96
606 608 8.874744 TGATATAATTTTTGGTGACATGCATG 57.125 30.769 25.09 25.09 42.32 4.06
607 609 8.693625 TGATATAATTTTTGGTGACATGCATGA 58.306 29.630 32.75 9.00 42.32 3.07
608 610 9.531942 GATATAATTTTTGGTGACATGCATGAA 57.468 29.630 32.75 17.28 42.32 2.57
609 611 5.927954 AATTTTTGGTGACATGCATGAAC 57.072 34.783 32.75 26.11 42.32 3.18
610 612 4.397481 TTTTTGGTGACATGCATGAACA 57.603 36.364 32.75 25.57 42.32 3.18
611 613 4.603989 TTTTGGTGACATGCATGAACAT 57.396 36.364 32.75 10.70 42.32 2.71
612 614 4.603989 TTTGGTGACATGCATGAACATT 57.396 36.364 32.75 10.28 42.32 2.71
613 615 4.603989 TTGGTGACATGCATGAACATTT 57.396 36.364 32.75 9.47 42.32 2.32
614 616 4.603989 TGGTGACATGCATGAACATTTT 57.396 36.364 32.75 8.66 33.40 1.82
615 617 4.308265 TGGTGACATGCATGAACATTTTG 58.692 39.130 32.75 5.04 33.40 2.44
616 618 4.202233 TGGTGACATGCATGAACATTTTGT 60.202 37.500 32.75 8.74 33.40 2.83
617 619 4.751098 GGTGACATGCATGAACATTTTGTT 59.249 37.500 32.75 6.24 44.37 2.83
618 620 5.925397 GGTGACATGCATGAACATTTTGTTA 59.075 36.000 32.75 2.51 41.28 2.41
619 621 6.089820 GGTGACATGCATGAACATTTTGTTAG 59.910 38.462 32.75 1.29 41.28 2.34
620 622 6.642131 GTGACATGCATGAACATTTTGTTAGT 59.358 34.615 32.75 4.97 41.28 2.24
621 623 7.169645 GTGACATGCATGAACATTTTGTTAGTT 59.830 33.333 32.75 4.26 41.28 2.24
622 624 8.355913 TGACATGCATGAACATTTTGTTAGTTA 58.644 29.630 32.75 0.00 41.28 2.24
623 625 9.190858 GACATGCATGAACATTTTGTTAGTTAA 57.809 29.630 32.75 0.00 41.28 2.01
624 626 9.539825 ACATGCATGAACATTTTGTTAGTTAAA 57.460 25.926 32.75 0.00 41.28 1.52
627 629 9.979578 TGCATGAACATTTTGTTAGTTAAATCT 57.020 25.926 0.00 0.00 41.28 2.40
644 646 9.226606 AGTTAAATCTATGGTCAAAATTCGACA 57.773 29.630 9.47 0.00 34.97 4.35
645 647 9.274065 GTTAAATCTATGGTCAAAATTCGACAC 57.726 33.333 9.47 1.73 34.97 3.67
646 648 7.447374 AAATCTATGGTCAAAATTCGACACA 57.553 32.000 9.47 6.15 34.97 3.72
647 649 7.447374 AATCTATGGTCAAAATTCGACACAA 57.553 32.000 9.47 0.00 34.97 3.33
648 650 6.869315 TCTATGGTCAAAATTCGACACAAA 57.131 33.333 9.47 0.00 34.97 2.83
649 651 7.265647 TCTATGGTCAAAATTCGACACAAAA 57.734 32.000 9.47 0.74 34.97 2.44
650 652 7.881142 TCTATGGTCAAAATTCGACACAAAAT 58.119 30.769 9.47 0.35 34.97 1.82
651 653 9.004717 TCTATGGTCAAAATTCGACACAAAATA 57.995 29.630 9.47 1.20 34.97 1.40
652 654 9.787532 CTATGGTCAAAATTCGACACAAAATAT 57.212 29.630 9.47 0.00 34.97 1.28
679 681 9.892130 AATAAAGACCAATAAACTAGGACAGAG 57.108 33.333 0.00 0.00 0.00 3.35
680 682 7.554959 AAAGACCAATAAACTAGGACAGAGA 57.445 36.000 0.00 0.00 0.00 3.10
696 698 7.947282 AGGACAGAGATAGTACTAATTTCAGC 58.053 38.462 6.70 0.00 0.00 4.26
729 731 2.124109 TGTTGGCAAGTCCCGCAA 60.124 55.556 0.00 0.00 0.00 4.85
772 825 2.841215 ACCGACTTTGATTTTGACCGA 58.159 42.857 0.00 0.00 0.00 4.69
826 881 0.979187 TAAACCCCCTACAGGCCTCG 60.979 60.000 0.00 0.52 0.00 4.63
847 902 2.029073 CATTCGTATCGGCCGGCT 59.971 61.111 28.56 15.95 0.00 5.52
872 927 2.203922 TGACCCAGCCCAGTAGCA 60.204 61.111 0.00 0.00 34.23 3.49
964 1019 2.579201 CATCCGCCCGTCTGAAGT 59.421 61.111 0.00 0.00 0.00 3.01
987 1042 1.308746 CCCACCCCTAACCCCATCT 60.309 63.158 0.00 0.00 0.00 2.90
1028 1083 4.251843 CCGATCTTCTCGCCGCGA 62.252 66.667 15.90 15.90 46.25 5.87
1029 1084 3.019545 CGATCTTCTCGCCGCGAC 61.020 66.667 12.39 0.00 41.14 5.19
1030 1085 2.655685 GATCTTCTCGCCGCGACC 60.656 66.667 12.39 0.00 0.00 4.79
1031 1086 4.554363 ATCTTCTCGCCGCGACCG 62.554 66.667 12.39 10.61 0.00 4.79
1084 1139 2.509336 GCTCGGATGACCACCACG 60.509 66.667 0.00 0.00 35.59 4.94
1131 1186 3.663176 CAGCACCACCACAAGCGG 61.663 66.667 0.00 0.00 0.00 5.52
1216 1271 4.695231 CTCGCCGACACCGTTCGT 62.695 66.667 0.00 0.00 37.29 3.85
1231 1286 1.397390 TTCGTATTCCCCCTCCGAGC 61.397 60.000 0.00 0.00 0.00 5.03
1473 1543 2.035442 GCGCAGGAGGTTTGAGGAC 61.035 63.158 0.30 0.00 0.00 3.85
1520 1590 1.664956 AAGGGGGACAAGGGCAGTTT 61.665 55.000 0.00 0.00 0.00 2.66
1535 1605 1.524355 CAGTTTGTCTCGTGAGCACAG 59.476 52.381 1.20 0.00 0.00 3.66
1599 1669 6.551736 CGCAGCCACTAATGTAAGTATTTTT 58.448 36.000 0.00 0.00 0.00 1.94
1622 1706 9.709495 TTTTTGCTGCTTTCTTATATTGTTCAT 57.291 25.926 0.00 0.00 0.00 2.57
1682 1772 6.344500 AGTGATTCCTAATGTGCTTGAGTAG 58.656 40.000 0.00 0.00 0.00 2.57
1779 1921 7.136772 CACATTGCTGGTGAATATGATACTTG 58.863 38.462 0.00 0.00 38.54 3.16
1784 1926 8.978874 TGCTGGTGAATATGATACTTGTTTAT 57.021 30.769 0.00 0.00 0.00 1.40
1923 2097 6.986817 TCCTAAGCTGACTTTGCATCTTATAC 59.013 38.462 0.00 0.00 37.33 1.47
1936 2111 2.999331 TCTTATACTTTGCAGGGTGGC 58.001 47.619 4.26 0.00 0.00 5.01
2231 2412 8.873215 AAGACATTACAATGATTACTAGTCCG 57.127 34.615 8.89 0.00 39.67 4.79
2369 2550 0.601046 CTGTTTCTGGCTCGAGTGCA 60.601 55.000 15.13 2.47 34.04 4.57
2408 2589 1.817357 CATCTTCTGAACTGCCTGCA 58.183 50.000 0.00 0.00 0.00 4.41
2423 2604 1.674221 CCTGCAAGTAGTGTCTCTGCC 60.674 57.143 0.00 0.00 0.00 4.85
2706 3148 8.677300 AGGTAAACATCTGCAACTTAACATATG 58.323 33.333 0.00 0.00 0.00 1.78
2708 3150 9.277565 GTAAACATCTGCAACTTAACATATGTG 57.722 33.333 9.63 0.00 34.84 3.21
3240 3870 0.036952 TTGCTGCTACCTCACTCTGC 60.037 55.000 0.00 0.00 0.00 4.26
3270 3900 5.945144 TTGTAGACCCCCTTTATCAGTAC 57.055 43.478 0.00 0.00 0.00 2.73
3313 3947 9.468532 CTTTTATTTCTTTTCAGGGACTCAAAG 57.531 33.333 0.00 0.00 37.20 2.77
3317 3951 7.660030 TTTCTTTTCAGGGACTCAAAGATTT 57.340 32.000 0.00 0.00 41.60 2.17
3320 3954 5.789643 TTTCAGGGACTCAAAGATTTTGG 57.210 39.130 2.09 0.00 34.60 3.28
3334 3968 8.701895 TCAAAGATTTTGGTATCTCCTACGTAT 58.298 33.333 0.00 0.00 33.81 3.06
3424 4058 4.340246 CCACCAGCTGAGCCTGCA 62.340 66.667 17.39 0.00 0.00 4.41
3610 4244 1.474143 GCAGAAGCTACACAGGATCCC 60.474 57.143 8.55 0.00 37.91 3.85
3814 4460 0.537371 CCCAGACCCGCTTCAAAGTT 60.537 55.000 0.00 0.00 0.00 2.66
4123 4781 3.689347 TGCAGATGCTAAAGTTCCACAT 58.311 40.909 6.35 0.00 42.66 3.21
4166 4827 4.448060 ACTTTTCGGAAGATTCGTCTTGAC 59.552 41.667 6.48 0.00 41.60 3.18
4231 4897 4.872124 TGCTCTACTATTCACATGCAGTTG 59.128 41.667 0.00 0.00 0.00 3.16
4244 4910 3.995526 CAGTTGGTGAGACTGCTGA 57.004 52.632 0.00 0.00 38.20 4.26
4252 4918 2.093764 GGTGAGACTGCTGAATGCTAGT 60.094 50.000 0.00 0.00 43.37 2.57
4254 4920 4.358851 GTGAGACTGCTGAATGCTAGTAG 58.641 47.826 0.00 0.00 43.37 2.57
4258 4924 1.857217 CTGCTGAATGCTAGTAGTGCG 59.143 52.381 0.00 0.00 43.37 5.34
4259 4925 1.476488 TGCTGAATGCTAGTAGTGCGA 59.524 47.619 0.00 0.00 43.37 5.10
4260 4926 2.094234 TGCTGAATGCTAGTAGTGCGAA 60.094 45.455 0.00 0.00 43.37 4.70
4300 4966 8.997621 ACTACTTTGTATTGTCACGAATATGT 57.002 30.769 0.00 0.00 0.00 2.29
4309 4975 9.767684 GTATTGTCACGAATATGTCATTTTTCA 57.232 29.630 0.00 0.00 0.00 2.69
4314 4980 7.689812 GTCACGAATATGTCATTTTTCAGACTG 59.310 37.037 0.00 0.00 35.81 3.51
4327 4993 6.691754 TTTTCAGACTGTTGATGCTTGTTA 57.308 33.333 1.59 0.00 0.00 2.41
4335 5004 5.180117 ACTGTTGATGCTTGTTATGTCTGTC 59.820 40.000 0.00 0.00 0.00 3.51
4604 5278 0.958091 TTCACAACGAGCCCCAAATG 59.042 50.000 0.00 0.00 0.00 2.32
4646 5326 3.267916 ACCTCAGGTGGGGTTTGTA 57.732 52.632 0.00 0.00 32.98 2.41
4650 5330 2.236395 CCTCAGGTGGGGTTTGTACTAG 59.764 54.545 0.00 0.00 0.00 2.57
4668 5350 3.498777 ACTAGTTTTGCCGAAGCTTCTTC 59.501 43.478 23.50 14.88 40.80 2.87
4695 5377 6.371548 CCTCGAAAATCTCATTGAGGTTTGTA 59.628 38.462 22.33 11.73 41.45 2.41
4696 5378 7.094805 CCTCGAAAATCTCATTGAGGTTTGTAA 60.095 37.037 22.33 11.44 41.45 2.41
4697 5379 7.581476 TCGAAAATCTCATTGAGGTTTGTAAC 58.419 34.615 22.33 14.00 41.45 2.50
4699 5381 8.023128 CGAAAATCTCATTGAGGTTTGTAACAT 58.977 33.333 22.33 8.37 41.45 2.71
4700 5382 9.346725 GAAAATCTCATTGAGGTTTGTAACATC 57.653 33.333 22.33 12.82 41.45 3.06
4707 5389 4.203226 TGAGGTTTGTAACATCACAAGCA 58.797 39.130 3.10 0.00 46.01 3.91
4708 5390 4.826733 TGAGGTTTGTAACATCACAAGCAT 59.173 37.500 3.10 0.00 46.01 3.79
4709 5391 5.125100 AGGTTTGTAACATCACAAGCATG 57.875 39.130 5.42 0.00 40.28 4.06
4710 5392 4.584325 AGGTTTGTAACATCACAAGCATGT 59.416 37.500 0.00 0.00 40.28 3.21
4712 5394 4.764679 TTGTAACATCACAAGCATGTCC 57.235 40.909 0.00 0.00 37.82 4.02
4713 5395 3.081061 TGTAACATCACAAGCATGTCCC 58.919 45.455 0.00 0.00 37.82 4.46
4714 5396 2.592102 AACATCACAAGCATGTCCCT 57.408 45.000 0.00 0.00 37.82 4.20
4718 5400 3.642848 ACATCACAAGCATGTCCCTTTTT 59.357 39.130 0.00 0.00 37.82 1.94
4719 5401 4.832266 ACATCACAAGCATGTCCCTTTTTA 59.168 37.500 0.00 0.00 37.82 1.52
4720 5402 5.481473 ACATCACAAGCATGTCCCTTTTTAT 59.519 36.000 0.00 0.00 37.82 1.40
4721 5403 6.663093 ACATCACAAGCATGTCCCTTTTTATA 59.337 34.615 0.00 0.00 37.82 0.98
4722 5404 7.178274 ACATCACAAGCATGTCCCTTTTTATAA 59.822 33.333 0.00 0.00 37.82 0.98
4724 5406 6.152661 TCACAAGCATGTCCCTTTTTATAAGG 59.847 38.462 0.00 0.00 37.82 2.69
4725 5407 6.016555 ACAAGCATGTCCCTTTTTATAAGGT 58.983 36.000 0.00 0.00 33.41 3.50
4726 5408 6.152831 ACAAGCATGTCCCTTTTTATAAGGTC 59.847 38.462 0.00 0.00 33.41 3.85
4727 5409 6.079712 AGCATGTCCCTTTTTATAAGGTCT 57.920 37.500 0.00 0.00 35.65 3.85
4728 5410 6.122964 AGCATGTCCCTTTTTATAAGGTCTC 58.877 40.000 0.00 0.00 35.65 3.36
4729 5411 5.885912 GCATGTCCCTTTTTATAAGGTCTCA 59.114 40.000 0.00 0.00 35.65 3.27
4730 5412 6.183360 GCATGTCCCTTTTTATAAGGTCTCAC 60.183 42.308 0.00 0.00 35.65 3.51
4731 5413 6.697641 TGTCCCTTTTTATAAGGTCTCACT 57.302 37.500 1.10 0.00 35.65 3.41
4732 5414 7.086685 TGTCCCTTTTTATAAGGTCTCACTT 57.913 36.000 1.10 0.00 35.65 3.16
4734 5416 8.662255 TGTCCCTTTTTATAAGGTCTCACTTTA 58.338 33.333 1.10 0.00 35.65 1.85
4735 5417 9.511272 GTCCCTTTTTATAAGGTCTCACTTTAA 57.489 33.333 1.10 0.00 35.65 1.52
4743 5425 5.515797 AAGGTCTCACTTTAAAAAGGTGC 57.484 39.130 7.34 0.00 40.31 5.01
4744 5426 4.532834 AGGTCTCACTTTAAAAAGGTGCA 58.467 39.130 7.34 0.00 40.31 4.57
4745 5427 5.140454 AGGTCTCACTTTAAAAAGGTGCAT 58.860 37.500 7.34 0.00 40.31 3.96
4746 5428 5.010012 AGGTCTCACTTTAAAAAGGTGCATG 59.990 40.000 7.34 0.00 40.31 4.06
4747 5429 4.681483 GTCTCACTTTAAAAAGGTGCATGC 59.319 41.667 11.82 11.82 40.31 4.06
4750 5432 4.989797 TCACTTTAAAAAGGTGCATGCATG 59.010 37.500 25.64 22.70 40.31 4.06
4751 5433 3.747529 ACTTTAAAAAGGTGCATGCATGC 59.252 39.130 38.71 38.71 45.64 4.06
4764 5446 4.271590 CATGCATGCAACCATTTCATTG 57.728 40.909 26.68 10.40 0.00 2.82
4765 5447 2.701107 TGCATGCAACCATTTCATTGG 58.299 42.857 20.30 0.00 42.82 3.16
4781 5463 5.999205 TCATTGGTTACATTGAAAGCCAT 57.001 34.783 0.00 0.00 34.92 4.40
4782 5464 6.357579 TCATTGGTTACATTGAAAGCCATT 57.642 33.333 0.00 0.00 34.92 3.16
4783 5465 6.164876 TCATTGGTTACATTGAAAGCCATTG 58.835 36.000 11.47 11.47 34.92 2.82
4784 5466 5.543507 TTGGTTACATTGAAAGCCATTGT 57.456 34.783 0.00 0.00 40.96 2.71
4785 5467 5.543507 TGGTTACATTGAAAGCCATTGTT 57.456 34.783 0.00 0.00 39.34 2.83
4788 5470 5.757808 GGTTACATTGAAAGCCATTGTTGTT 59.242 36.000 0.00 0.00 39.34 2.83
4790 5472 4.128643 ACATTGAAAGCCATTGTTGTTGG 58.871 39.130 0.00 0.00 36.32 3.77
4793 5475 1.866601 GAAAGCCATTGTTGTTGGTGC 59.133 47.619 0.00 0.00 36.57 5.01
4794 5476 0.106521 AAGCCATTGTTGTTGGTGCC 59.893 50.000 0.00 0.00 36.57 5.01
4795 5477 1.047596 AGCCATTGTTGTTGGTGCCA 61.048 50.000 0.00 0.00 36.57 4.92
4796 5478 0.035176 GCCATTGTTGTTGGTGCCAT 59.965 50.000 0.00 0.00 36.57 4.40
4797 5479 1.798283 CCATTGTTGTTGGTGCCATG 58.202 50.000 0.00 0.00 0.00 3.66
4799 5481 0.035176 ATTGTTGTTGGTGCCATGGC 59.965 50.000 30.54 30.54 42.35 4.40
4800 5482 1.047596 TTGTTGTTGGTGCCATGGCT 61.048 50.000 35.53 0.00 42.51 4.75
4801 5483 1.005867 GTTGTTGGTGCCATGGCTG 60.006 57.895 35.53 0.00 42.51 4.85
4802 5484 1.152589 TTGTTGGTGCCATGGCTGA 60.153 52.632 35.53 15.87 42.51 4.26
4803 5485 0.758310 TTGTTGGTGCCATGGCTGAA 60.758 50.000 35.53 22.05 42.51 3.02
4805 5487 0.392336 GTTGGTGCCATGGCTGAAAA 59.608 50.000 35.53 21.39 42.51 2.29
4806 5488 1.126488 TTGGTGCCATGGCTGAAAAA 58.874 45.000 35.53 19.74 42.51 1.94
4808 5490 1.698532 TGGTGCCATGGCTGAAAAATT 59.301 42.857 35.53 0.00 42.51 1.82
4809 5491 2.902486 TGGTGCCATGGCTGAAAAATTA 59.098 40.909 35.53 11.01 42.51 1.40
4810 5492 3.326006 TGGTGCCATGGCTGAAAAATTAA 59.674 39.130 35.53 10.21 42.51 1.40
4811 5493 4.019501 TGGTGCCATGGCTGAAAAATTAAT 60.020 37.500 35.53 0.00 42.51 1.40
4813 5495 5.523552 GGTGCCATGGCTGAAAAATTAATAC 59.476 40.000 35.53 20.28 42.51 1.89
4814 5496 6.105333 GTGCCATGGCTGAAAAATTAATACA 58.895 36.000 35.53 8.25 42.51 2.29
4815 5497 6.035975 GTGCCATGGCTGAAAAATTAATACAC 59.964 38.462 35.53 16.52 42.51 2.90
4816 5498 6.070881 TGCCATGGCTGAAAAATTAATACACT 60.071 34.615 35.53 0.00 42.51 3.55
4817 5499 6.818142 GCCATGGCTGAAAAATTAATACACTT 59.182 34.615 29.98 0.00 38.26 3.16
4819 5501 8.034215 CCATGGCTGAAAAATTAATACACTTCA 58.966 33.333 0.00 0.00 0.00 3.02
4821 5503 8.984891 TGGCTGAAAAATTAATACACTTCATG 57.015 30.769 0.00 0.00 0.00 3.07
4823 5505 7.253750 GGCTGAAAAATTAATACACTTCATGCG 60.254 37.037 0.00 0.00 0.00 4.73
4824 5506 7.273381 GCTGAAAAATTAATACACTTCATGCGT 59.727 33.333 0.00 0.00 0.00 5.24
4825 5507 8.446489 TGAAAAATTAATACACTTCATGCGTG 57.554 30.769 11.82 11.82 38.32 5.34
4826 5508 8.079203 TGAAAAATTAATACACTTCATGCGTGT 58.921 29.630 19.70 19.70 46.45 4.49
4827 5509 8.810652 AAAAATTAATACACTTCATGCGTGTT 57.189 26.923 20.59 10.24 42.56 3.32
4829 5511 8.810652 AAATTAATACACTTCATGCGTGTTTT 57.189 26.923 20.59 19.84 42.56 2.43
4830 5512 8.810652 AATTAATACACTTCATGCGTGTTTTT 57.189 26.923 20.59 16.96 42.56 1.94
4846 5528 2.545537 TTTTTCATTGGCTGCATGCA 57.454 40.000 21.29 21.29 45.15 3.96
4847 5529 2.772077 TTTTCATTGGCTGCATGCAT 57.228 40.000 22.97 2.13 45.15 3.96
4848 5530 2.017138 TTTCATTGGCTGCATGCATG 57.983 45.000 22.97 22.70 45.15 4.06
4849 5531 0.899019 TTCATTGGCTGCATGCATGT 59.101 45.000 26.79 3.11 45.15 3.21
4850 5532 0.174617 TCATTGGCTGCATGCATGTG 59.825 50.000 26.79 20.03 45.15 3.21
4852 5534 0.459899 ATTGGCTGCATGCATGTGAG 59.540 50.000 26.79 22.09 45.15 3.51
4853 5535 0.609681 TTGGCTGCATGCATGTGAGA 60.610 50.000 26.79 8.79 45.15 3.27
4854 5536 1.029947 TGGCTGCATGCATGTGAGAG 61.030 55.000 26.79 17.66 45.15 3.20
4855 5537 0.746923 GGCTGCATGCATGTGAGAGA 60.747 55.000 26.79 4.82 45.15 3.10
4856 5538 0.658368 GCTGCATGCATGTGAGAGAG 59.342 55.000 26.79 7.15 42.31 3.20
4857 5539 2.012554 GCTGCATGCATGTGAGAGAGT 61.013 52.381 26.79 0.00 42.31 3.24
4858 5540 1.666189 CTGCATGCATGTGAGAGAGTG 59.334 52.381 26.79 0.21 0.00 3.51
4859 5541 0.377554 GCATGCATGTGAGAGAGTGC 59.622 55.000 26.79 7.20 38.05 4.40
4862 5544 2.484742 TGCATGTGAGAGAGTGCATT 57.515 45.000 0.00 0.00 42.13 3.56
4863 5545 3.615224 TGCATGTGAGAGAGTGCATTA 57.385 42.857 0.00 0.00 42.13 1.90
4866 5548 4.186926 GCATGTGAGAGAGTGCATTAAGA 58.813 43.478 0.00 0.00 37.52 2.10
4868 5550 5.296283 GCATGTGAGAGAGTGCATTAAGAAT 59.704 40.000 0.00 0.00 37.52 2.40
4869 5551 6.481313 GCATGTGAGAGAGTGCATTAAGAATA 59.519 38.462 0.00 0.00 37.52 1.75
4870 5552 7.307278 GCATGTGAGAGAGTGCATTAAGAATAG 60.307 40.741 0.00 0.00 37.52 1.73
4871 5553 7.410120 TGTGAGAGAGTGCATTAAGAATAGA 57.590 36.000 0.00 0.00 0.00 1.98
4872 5554 7.840931 TGTGAGAGAGTGCATTAAGAATAGAA 58.159 34.615 0.00 0.00 0.00 2.10
4873 5555 8.481314 TGTGAGAGAGTGCATTAAGAATAGAAT 58.519 33.333 0.00 0.00 0.00 2.40
4874 5556 9.323985 GTGAGAGAGTGCATTAAGAATAGAATT 57.676 33.333 0.00 0.00 0.00 2.17
4875 5557 9.322773 TGAGAGAGTGCATTAAGAATAGAATTG 57.677 33.333 0.00 0.00 0.00 2.32
4876 5558 9.539825 GAGAGAGTGCATTAAGAATAGAATTGA 57.460 33.333 0.00 0.00 0.00 2.57
4877 5559 9.896645 AGAGAGTGCATTAAGAATAGAATTGAA 57.103 29.630 0.00 0.00 0.00 2.69
4879 5561 9.896645 AGAGTGCATTAAGAATAGAATTGAAGA 57.103 29.630 0.00 0.00 0.00 2.87
4894 5576 8.976986 AGAATTGAAGAATTAATGTGAGCAAC 57.023 30.769 0.00 0.00 31.58 4.17
4895 5577 8.800332 AGAATTGAAGAATTAATGTGAGCAACT 58.200 29.630 0.00 0.00 31.58 3.16
4896 5578 9.415544 GAATTGAAGAATTAATGTGAGCAACTT 57.584 29.630 0.00 0.00 31.58 2.66
4907 5589 7.928307 AATGTGAGCAACTTATTATGTGTCT 57.072 32.000 0.00 0.00 0.00 3.41
4908 5590 7.928307 ATGTGAGCAACTTATTATGTGTCTT 57.072 32.000 0.00 0.00 0.00 3.01
4909 5591 7.132694 TGTGAGCAACTTATTATGTGTCTTG 57.867 36.000 0.00 0.00 0.00 3.02
4910 5592 6.149308 TGTGAGCAACTTATTATGTGTCTTGG 59.851 38.462 0.00 0.00 0.00 3.61
4911 5593 6.149474 GTGAGCAACTTATTATGTGTCTTGGT 59.851 38.462 0.00 0.00 0.00 3.67
4912 5594 6.714810 TGAGCAACTTATTATGTGTCTTGGTT 59.285 34.615 0.00 0.00 0.00 3.67
4913 5595 7.230510 TGAGCAACTTATTATGTGTCTTGGTTT 59.769 33.333 0.00 0.00 0.00 3.27
4914 5596 8.630054 AGCAACTTATTATGTGTCTTGGTTTA 57.370 30.769 0.00 0.00 0.00 2.01
4915 5597 9.073475 AGCAACTTATTATGTGTCTTGGTTTAA 57.927 29.630 0.00 0.00 0.00 1.52
4916 5598 9.341899 GCAACTTATTATGTGTCTTGGTTTAAG 57.658 33.333 0.00 0.00 37.76 1.85
4924 5606 9.796120 TTATGTGTCTTGGTTTAAGAAAAGTTG 57.204 29.630 0.00 0.00 46.48 3.16
4925 5607 7.222000 TGTGTCTTGGTTTAAGAAAAGTTGT 57.778 32.000 0.00 0.00 46.48 3.32
4926 5608 7.309920 TGTGTCTTGGTTTAAGAAAAGTTGTC 58.690 34.615 0.00 0.00 46.48 3.18
4927 5609 7.175990 TGTGTCTTGGTTTAAGAAAAGTTGTCT 59.824 33.333 0.00 0.00 46.48 3.41
4928 5610 8.027189 GTGTCTTGGTTTAAGAAAAGTTGTCTT 58.973 33.333 12.91 12.91 46.48 3.01
4929 5611 8.581578 TGTCTTGGTTTAAGAAAAGTTGTCTTT 58.418 29.630 13.54 0.00 46.48 2.52
4932 5614 9.516314 CTTGGTTTAAGAAAAGTTGTCTTTAGG 57.484 33.333 13.54 0.00 42.26 2.69
4933 5615 7.485810 TGGTTTAAGAAAAGTTGTCTTTAGGC 58.514 34.615 13.54 2.62 42.26 3.93
4934 5616 6.921857 GGTTTAAGAAAAGTTGTCTTTAGGCC 59.078 38.462 13.54 7.45 42.26 5.19
4935 5617 7.201884 GGTTTAAGAAAAGTTGTCTTTAGGCCT 60.202 37.037 13.54 11.78 42.26 5.19
4936 5618 8.843262 GTTTAAGAAAAGTTGTCTTTAGGCCTA 58.157 33.333 13.54 8.91 42.26 3.93
4937 5619 8.983702 TTAAGAAAAGTTGTCTTTAGGCCTAA 57.016 30.769 21.68 21.68 42.26 2.69
4938 5620 9.582648 TTAAGAAAAGTTGTCTTTAGGCCTAAT 57.417 29.630 25.70 6.84 42.26 1.73
4940 5622 9.582648 AAGAAAAGTTGTCTTTAGGCCTAATAA 57.417 29.630 25.70 13.92 42.26 1.40
4941 5623 9.582648 AGAAAAGTTGTCTTTAGGCCTAATAAA 57.417 29.630 25.70 12.32 42.26 1.40
4944 5626 8.521170 AAGTTGTCTTTAGGCCTAATAAATCC 57.479 34.615 25.70 12.64 0.00 3.01
4945 5627 6.766467 AGTTGTCTTTAGGCCTAATAAATCCG 59.234 38.462 25.70 8.69 0.00 4.18
4946 5628 5.617252 TGTCTTTAGGCCTAATAAATCCGG 58.383 41.667 25.70 0.00 0.00 5.14
4947 5629 5.367352 TGTCTTTAGGCCTAATAAATCCGGA 59.633 40.000 25.70 6.61 0.00 5.14
4948 5630 5.699915 GTCTTTAGGCCTAATAAATCCGGAC 59.300 44.000 25.70 16.99 0.00 4.79
4949 5631 2.833631 AGGCCTAATAAATCCGGACG 57.166 50.000 6.12 0.00 0.00 4.79
4950 5632 1.346722 AGGCCTAATAAATCCGGACGG 59.653 52.381 6.12 3.96 0.00 4.79
4959 5641 2.273449 TCCGGACGGAGGGAGTAC 59.727 66.667 9.76 0.00 39.76 2.73
4960 5642 2.832201 CCGGACGGAGGGAGTACC 60.832 72.222 4.40 0.00 37.50 3.34
5006 5697 2.062971 AGAGCAAATGATGGGCGATT 57.937 45.000 0.00 0.00 0.00 3.34
5116 5820 1.374947 CCCCTTCTCTCCGTTTGCA 59.625 57.895 0.00 0.00 0.00 4.08
5121 5825 2.621338 CTTCTCTCCGTTTGCAGCATA 58.379 47.619 0.00 0.00 0.00 3.14
5122 5826 2.010145 TCTCTCCGTTTGCAGCATAC 57.990 50.000 5.94 5.94 0.00 2.39
5123 5827 1.550524 TCTCTCCGTTTGCAGCATACT 59.449 47.619 13.34 0.00 0.00 2.12
5124 5828 2.028112 TCTCTCCGTTTGCAGCATACTT 60.028 45.455 13.34 0.00 0.00 2.24
5125 5829 2.346803 TCTCCGTTTGCAGCATACTTC 58.653 47.619 13.34 0.00 0.00 3.01
5126 5830 1.398390 CTCCGTTTGCAGCATACTTCC 59.602 52.381 13.34 0.00 0.00 3.46
5127 5831 0.451783 CCGTTTGCAGCATACTTCCC 59.548 55.000 13.34 0.00 0.00 3.97
5128 5832 1.453155 CGTTTGCAGCATACTTCCCT 58.547 50.000 13.34 0.00 0.00 4.20
5129 5833 1.812571 CGTTTGCAGCATACTTCCCTT 59.187 47.619 13.34 0.00 0.00 3.95
5130 5834 2.228822 CGTTTGCAGCATACTTCCCTTT 59.771 45.455 13.34 0.00 0.00 3.11
5131 5835 3.578688 GTTTGCAGCATACTTCCCTTTG 58.421 45.455 8.62 0.00 0.00 2.77
5132 5836 1.838112 TGCAGCATACTTCCCTTTGG 58.162 50.000 0.00 0.00 0.00 3.28
5133 5837 1.075374 TGCAGCATACTTCCCTTTGGT 59.925 47.619 0.00 0.00 0.00 3.67
5134 5838 2.171003 GCAGCATACTTCCCTTTGGTT 58.829 47.619 0.00 0.00 0.00 3.67
5135 5839 2.562738 GCAGCATACTTCCCTTTGGTTT 59.437 45.455 0.00 0.00 0.00 3.27
5136 5840 3.006859 GCAGCATACTTCCCTTTGGTTTT 59.993 43.478 0.00 0.00 0.00 2.43
5137 5841 4.503123 GCAGCATACTTCCCTTTGGTTTTT 60.503 41.667 0.00 0.00 0.00 1.94
5138 5842 4.990426 CAGCATACTTCCCTTTGGTTTTTG 59.010 41.667 0.00 0.00 0.00 2.44
5139 5843 4.653801 AGCATACTTCCCTTTGGTTTTTGT 59.346 37.500 0.00 0.00 0.00 2.83
5140 5844 5.130311 AGCATACTTCCCTTTGGTTTTTGTT 59.870 36.000 0.00 0.00 0.00 2.83
5141 5845 5.236263 GCATACTTCCCTTTGGTTTTTGTTG 59.764 40.000 0.00 0.00 0.00 3.33
5142 5846 3.605634 ACTTCCCTTTGGTTTTTGTTGC 58.394 40.909 0.00 0.00 0.00 4.17
5143 5847 2.700722 TCCCTTTGGTTTTTGTTGCC 57.299 45.000 0.00 0.00 0.00 4.52
5144 5848 1.909302 TCCCTTTGGTTTTTGTTGCCA 59.091 42.857 0.00 0.00 0.00 4.92
5145 5849 2.013400 CCCTTTGGTTTTTGTTGCCAC 58.987 47.619 0.00 0.00 31.19 5.01
5146 5850 2.013400 CCTTTGGTTTTTGTTGCCACC 58.987 47.619 0.00 0.00 31.19 4.61
5147 5851 1.663135 CTTTGGTTTTTGTTGCCACCG 59.337 47.619 0.00 0.00 31.24 4.94
5148 5852 0.741221 TTGGTTTTTGTTGCCACCGC 60.741 50.000 0.00 0.00 31.24 5.68
5149 5853 1.142965 GGTTTTTGTTGCCACCGCT 59.857 52.632 0.00 0.00 35.36 5.52
5150 5854 1.151172 GGTTTTTGTTGCCACCGCTG 61.151 55.000 0.00 0.00 35.36 5.18
5151 5855 1.142748 TTTTTGTTGCCACCGCTGG 59.857 52.632 0.00 0.00 41.13 4.85
5152 5856 1.608717 TTTTTGTTGCCACCGCTGGT 61.609 50.000 0.00 0.00 40.17 4.00
5161 5865 3.072476 ACCGCTGGTGATCTGCTT 58.928 55.556 0.00 0.00 38.06 3.91
5162 5866 1.078848 ACCGCTGGTGATCTGCTTC 60.079 57.895 0.00 0.00 38.06 3.86
5163 5867 1.220206 CCGCTGGTGATCTGCTTCT 59.780 57.895 0.00 0.00 38.06 2.85
5164 5868 0.809241 CCGCTGGTGATCTGCTTCTC 60.809 60.000 0.00 0.00 38.06 2.87
5165 5869 0.108472 CGCTGGTGATCTGCTTCTCA 60.108 55.000 0.00 0.00 38.06 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 5.129485 AGACGAGTCATCCAATCTAAATGGT 59.871 40.000 5.99 0.00 39.09 3.55
59 60 3.125316 GTGCCTCCTAAAATCAACAGACG 59.875 47.826 0.00 0.00 0.00 4.18
90 91 4.655963 ACCTTTTCTTGATAGCAGCAGAA 58.344 39.130 0.00 0.00 0.00 3.02
95 96 6.586344 TCTCCATACCTTTTCTTGATAGCAG 58.414 40.000 0.00 0.00 0.00 4.24
136 137 2.249844 GGTTCAAACCGTCTTGAGGA 57.750 50.000 0.00 0.00 39.66 3.71
147 148 5.911280 GGTAAGAAACTTTAGCGGTTCAAAC 59.089 40.000 0.00 0.00 0.00 2.93
159 160 6.547510 AGTGCTCTTCAATGGTAAGAAACTTT 59.452 34.615 0.00 0.00 31.08 2.66
162 163 5.948992 AGTGCTCTTCAATGGTAAGAAAC 57.051 39.130 0.00 0.00 32.77 2.78
165 166 8.635765 AAAATTAGTGCTCTTCAATGGTAAGA 57.364 30.769 0.00 0.00 0.00 2.10
189 190 4.019501 TGGGTATGGTAAGCTCCGTAAAAA 60.020 41.667 0.00 0.00 31.74 1.94
208 209 4.609301 AGTTGGTGCATATTGTAATGGGT 58.391 39.130 0.00 0.00 0.00 4.51
231 232 4.280677 TGTTCAGGCTGGGTTTTTCTAATG 59.719 41.667 15.73 0.00 0.00 1.90
232 233 4.479158 TGTTCAGGCTGGGTTTTTCTAAT 58.521 39.130 15.73 0.00 0.00 1.73
234 235 3.586470 TGTTCAGGCTGGGTTTTTCTA 57.414 42.857 15.73 0.00 0.00 2.10
260 262 3.788163 GCTGAGTGCGATTATTTGAAAGC 59.212 43.478 0.00 0.00 0.00 3.51
274 276 1.865970 GCATATGACAGAGCTGAGTGC 59.134 52.381 6.97 3.66 43.29 4.40
281 283 5.943706 ATGATGAAAGCATATGACAGAGC 57.056 39.130 6.97 0.00 43.92 4.09
372 374 7.552330 TCATTACTGACAACATAATTGCAGCTA 59.448 33.333 0.00 0.00 31.49 3.32
404 406 0.179116 CAGTCTGCCATCGTCTCAGG 60.179 60.000 0.00 0.00 0.00 3.86
407 409 1.634702 GAACAGTCTGCCATCGTCTC 58.365 55.000 0.00 0.00 0.00 3.36
408 410 0.247736 GGAACAGTCTGCCATCGTCT 59.752 55.000 0.00 0.00 0.00 4.18
409 411 0.247736 AGGAACAGTCTGCCATCGTC 59.752 55.000 0.00 0.00 0.00 4.20
416 418 4.634184 TTATACGAGAGGAACAGTCTGC 57.366 45.455 0.00 0.00 0.00 4.26
421 423 5.006746 GCCAAACATTATACGAGAGGAACAG 59.993 44.000 0.00 0.00 0.00 3.16
454 456 3.318557 GGGACTAATGAACTAGGACGGAG 59.681 52.174 0.00 0.00 0.00 4.63
455 457 3.294214 GGGACTAATGAACTAGGACGGA 58.706 50.000 0.00 0.00 0.00 4.69
456 458 2.364647 GGGGACTAATGAACTAGGACGG 59.635 54.545 0.00 0.00 0.00 4.79
457 459 3.297736 AGGGGACTAATGAACTAGGACG 58.702 50.000 0.00 0.00 40.61 4.79
458 460 5.045797 ACAAAGGGGACTAATGAACTAGGAC 60.046 44.000 0.00 0.00 42.68 3.85
459 461 5.098663 ACAAAGGGGACTAATGAACTAGGA 58.901 41.667 0.00 0.00 42.68 2.94
460 462 5.437191 ACAAAGGGGACTAATGAACTAGG 57.563 43.478 0.00 0.00 42.68 3.02
461 463 9.462606 AAATTACAAAGGGGACTAATGAACTAG 57.537 33.333 0.00 0.00 42.68 2.57
462 464 9.238368 CAAATTACAAAGGGGACTAATGAACTA 57.762 33.333 0.00 0.00 42.68 2.24
463 465 7.728532 ACAAATTACAAAGGGGACTAATGAACT 59.271 33.333 0.00 0.00 42.68 3.01
464 466 7.812669 CACAAATTACAAAGGGGACTAATGAAC 59.187 37.037 0.00 0.00 42.68 3.18
465 467 7.507616 ACACAAATTACAAAGGGGACTAATGAA 59.492 33.333 0.00 0.00 42.68 2.57
466 468 7.007723 ACACAAATTACAAAGGGGACTAATGA 58.992 34.615 0.00 0.00 42.68 2.57
467 469 7.040062 TGACACAAATTACAAAGGGGACTAATG 60.040 37.037 0.00 0.00 42.68 1.90
468 470 7.007723 TGACACAAATTACAAAGGGGACTAAT 58.992 34.615 0.00 0.00 42.68 1.73
469 471 6.366340 TGACACAAATTACAAAGGGGACTAA 58.634 36.000 0.00 0.00 42.68 2.24
470 472 5.942961 TGACACAAATTACAAAGGGGACTA 58.057 37.500 0.00 0.00 42.68 2.59
472 474 5.523438 TTGACACAAATTACAAAGGGGAC 57.477 39.130 0.00 0.00 0.00 4.46
473 475 6.739331 ATTTGACACAAATTACAAAGGGGA 57.261 33.333 4.22 0.00 36.07 4.81
474 476 7.800155 AAATTTGACACAAATTACAAAGGGG 57.200 32.000 18.37 0.00 36.07 4.79
475 477 8.887717 TCAAAATTTGACACAAATTACAAAGGG 58.112 29.630 18.37 7.46 36.07 3.95
506 508 9.979578 TGCATTGACATTTTGTTAGTTAAATCT 57.020 25.926 0.00 0.00 0.00 2.40
509 511 9.539825 ACATGCATTGACATTTTGTTAGTTAAA 57.460 25.926 0.00 0.00 0.00 1.52
510 512 9.190858 GACATGCATTGACATTTTGTTAGTTAA 57.809 29.630 0.00 0.00 0.00 2.01
511 513 8.355913 TGACATGCATTGACATTTTGTTAGTTA 58.644 29.630 0.00 0.00 0.00 2.24
512 514 7.208777 TGACATGCATTGACATTTTGTTAGTT 58.791 30.769 0.00 0.00 0.00 2.24
513 515 6.747125 TGACATGCATTGACATTTTGTTAGT 58.253 32.000 0.00 0.00 0.00 2.24
514 516 7.169476 TGTTGACATGCATTGACATTTTGTTAG 59.831 33.333 0.00 0.00 30.18 2.34
515 517 6.982724 TGTTGACATGCATTGACATTTTGTTA 59.017 30.769 0.00 0.00 30.18 2.41
516 518 5.816258 TGTTGACATGCATTGACATTTTGTT 59.184 32.000 0.00 0.00 30.18 2.83
517 519 5.358090 TGTTGACATGCATTGACATTTTGT 58.642 33.333 0.00 0.00 30.18 2.83
518 520 5.908916 TGTTGACATGCATTGACATTTTG 57.091 34.783 0.00 0.00 30.18 2.44
519 521 6.922247 TTTGTTGACATGCATTGACATTTT 57.078 29.167 0.00 0.00 30.18 1.82
520 522 6.922247 TTTTGTTGACATGCATTGACATTT 57.078 29.167 0.00 0.00 30.18 2.32
521 523 6.922247 TTTTTGTTGACATGCATTGACATT 57.078 29.167 0.00 0.00 30.18 2.71
522 524 7.499321 AATTTTTGTTGACATGCATTGACAT 57.501 28.000 0.00 0.00 30.18 3.06
523 525 6.922247 AATTTTTGTTGACATGCATTGACA 57.078 29.167 0.00 0.00 0.00 3.58
524 526 7.849496 TGTAATTTTTGTTGACATGCATTGAC 58.151 30.769 0.00 0.00 0.00 3.18
525 527 7.307278 GCTGTAATTTTTGTTGACATGCATTGA 60.307 33.333 0.00 0.00 0.00 2.57
526 528 6.793203 GCTGTAATTTTTGTTGACATGCATTG 59.207 34.615 0.00 0.00 0.00 2.82
527 529 6.346758 CGCTGTAATTTTTGTTGACATGCATT 60.347 34.615 0.00 0.00 0.00 3.56
528 530 5.118971 CGCTGTAATTTTTGTTGACATGCAT 59.881 36.000 0.00 0.00 0.00 3.96
529 531 4.443725 CGCTGTAATTTTTGTTGACATGCA 59.556 37.500 0.00 0.00 0.00 3.96
530 532 4.444056 ACGCTGTAATTTTTGTTGACATGC 59.556 37.500 0.00 0.00 0.00 4.06
531 533 6.346339 CAACGCTGTAATTTTTGTTGACATG 58.654 36.000 0.00 0.00 39.11 3.21
532 534 5.461737 CCAACGCTGTAATTTTTGTTGACAT 59.538 36.000 4.60 0.00 39.11 3.06
533 535 4.800993 CCAACGCTGTAATTTTTGTTGACA 59.199 37.500 4.60 0.00 39.11 3.58
534 536 5.038033 TCCAACGCTGTAATTTTTGTTGAC 58.962 37.500 4.60 0.00 39.11 3.18
535 537 5.250235 TCCAACGCTGTAATTTTTGTTGA 57.750 34.783 4.60 0.00 39.11 3.18
536 538 6.523676 AATCCAACGCTGTAATTTTTGTTG 57.476 33.333 0.00 0.00 37.14 3.33
537 539 5.401079 CGAATCCAACGCTGTAATTTTTGTT 59.599 36.000 0.00 0.00 0.00 2.83
538 540 4.915085 CGAATCCAACGCTGTAATTTTTGT 59.085 37.500 0.00 0.00 0.00 2.83
539 541 4.915085 ACGAATCCAACGCTGTAATTTTTG 59.085 37.500 0.00 0.00 0.00 2.44
540 542 5.116069 ACGAATCCAACGCTGTAATTTTT 57.884 34.783 0.00 0.00 0.00 1.94
541 543 4.759516 ACGAATCCAACGCTGTAATTTT 57.240 36.364 0.00 0.00 0.00 1.82
542 544 6.431198 AATACGAATCCAACGCTGTAATTT 57.569 33.333 0.00 0.00 0.00 1.82
543 545 6.092944 TCAAATACGAATCCAACGCTGTAATT 59.907 34.615 0.00 0.00 0.00 1.40
544 546 5.583061 TCAAATACGAATCCAACGCTGTAAT 59.417 36.000 0.00 0.00 0.00 1.89
545 547 4.930405 TCAAATACGAATCCAACGCTGTAA 59.070 37.500 0.00 0.00 0.00 2.41
546 548 4.496360 TCAAATACGAATCCAACGCTGTA 58.504 39.130 0.00 0.00 0.00 2.74
547 549 3.331150 TCAAATACGAATCCAACGCTGT 58.669 40.909 0.00 0.00 0.00 4.40
548 550 4.088648 GTTCAAATACGAATCCAACGCTG 58.911 43.478 0.00 0.00 0.00 5.18
549 551 3.749088 TGTTCAAATACGAATCCAACGCT 59.251 39.130 0.00 0.00 0.00 5.07
550 552 4.073169 TGTTCAAATACGAATCCAACGC 57.927 40.909 0.00 0.00 0.00 4.84
551 553 5.901884 GCTATGTTCAAATACGAATCCAACG 59.098 40.000 0.00 0.00 0.00 4.10
552 554 7.016361 AGCTATGTTCAAATACGAATCCAAC 57.984 36.000 0.00 0.00 0.00 3.77
553 555 7.335673 TGAAGCTATGTTCAAATACGAATCCAA 59.664 33.333 0.00 0.00 33.41 3.53
554 556 6.821160 TGAAGCTATGTTCAAATACGAATCCA 59.179 34.615 0.00 0.00 33.41 3.41
555 557 7.246674 TGAAGCTATGTTCAAATACGAATCC 57.753 36.000 0.00 0.00 33.41 3.01
556 558 9.162793 CATTGAAGCTATGTTCAAATACGAATC 57.837 33.333 2.82 0.00 46.73 2.52
557 559 8.892723 TCATTGAAGCTATGTTCAAATACGAAT 58.107 29.630 2.82 0.00 46.73 3.34
558 560 8.262715 TCATTGAAGCTATGTTCAAATACGAA 57.737 30.769 2.82 0.00 46.73 3.85
559 561 7.841915 TCATTGAAGCTATGTTCAAATACGA 57.158 32.000 2.82 0.00 46.73 3.43
573 575 9.807649 GTCACCAAAAATTATATCATTGAAGCT 57.192 29.630 0.00 0.00 0.00 3.74
574 576 9.585099 TGTCACCAAAAATTATATCATTGAAGC 57.415 29.630 0.00 0.00 0.00 3.86
577 579 9.531942 GCATGTCACCAAAAATTATATCATTGA 57.468 29.630 0.00 0.00 0.00 2.57
578 580 9.315525 TGCATGTCACCAAAAATTATATCATTG 57.684 29.630 0.00 0.00 0.00 2.82
580 582 9.483916 CATGCATGTCACCAAAAATTATATCAT 57.516 29.630 18.91 0.00 0.00 2.45
581 583 8.693625 TCATGCATGTCACCAAAAATTATATCA 58.306 29.630 25.43 0.00 0.00 2.15
582 584 9.531942 TTCATGCATGTCACCAAAAATTATATC 57.468 29.630 25.43 0.00 0.00 1.63
583 585 9.316730 GTTCATGCATGTCACCAAAAATTATAT 57.683 29.630 25.43 0.00 0.00 0.86
584 586 8.309656 TGTTCATGCATGTCACCAAAAATTATA 58.690 29.630 25.43 0.00 0.00 0.98
585 587 7.160049 TGTTCATGCATGTCACCAAAAATTAT 58.840 30.769 25.43 0.00 0.00 1.28
586 588 6.519382 TGTTCATGCATGTCACCAAAAATTA 58.481 32.000 25.43 0.00 0.00 1.40
587 589 5.366460 TGTTCATGCATGTCACCAAAAATT 58.634 33.333 25.43 0.00 0.00 1.82
588 590 4.958509 TGTTCATGCATGTCACCAAAAAT 58.041 34.783 25.43 0.00 0.00 1.82
589 591 4.397481 TGTTCATGCATGTCACCAAAAA 57.603 36.364 25.43 7.77 0.00 1.94
590 592 4.603989 ATGTTCATGCATGTCACCAAAA 57.396 36.364 25.43 8.38 0.00 2.44
591 593 4.603989 AATGTTCATGCATGTCACCAAA 57.396 36.364 25.43 9.24 0.00 3.28
592 594 4.603989 AAATGTTCATGCATGTCACCAA 57.396 36.364 25.43 9.97 0.00 3.67
593 595 4.202233 ACAAAATGTTCATGCATGTCACCA 60.202 37.500 25.43 17.03 0.00 4.17
594 596 4.309099 ACAAAATGTTCATGCATGTCACC 58.691 39.130 25.43 12.41 0.00 4.02
595 597 5.910637 AACAAAATGTTCATGCATGTCAC 57.089 34.783 25.43 21.75 35.27 3.67
596 598 6.747125 ACTAACAAAATGTTCATGCATGTCA 58.253 32.000 25.43 23.31 40.22 3.58
597 599 7.642071 AACTAACAAAATGTTCATGCATGTC 57.358 32.000 25.43 19.05 40.22 3.06
598 600 9.539825 TTTAACTAACAAAATGTTCATGCATGT 57.460 25.926 25.43 4.01 40.22 3.21
601 603 9.979578 AGATTTAACTAACAAAATGTTCATGCA 57.020 25.926 0.00 0.00 40.22 3.96
618 620 9.226606 TGTCGAATTTTGACCATAGATTTAACT 57.773 29.630 13.12 0.00 35.46 2.24
619 621 9.274065 GTGTCGAATTTTGACCATAGATTTAAC 57.726 33.333 13.12 0.00 35.46 2.01
620 622 9.004717 TGTGTCGAATTTTGACCATAGATTTAA 57.995 29.630 13.12 0.00 35.46 1.52
621 623 8.554835 TGTGTCGAATTTTGACCATAGATTTA 57.445 30.769 13.12 0.00 35.46 1.40
622 624 7.447374 TGTGTCGAATTTTGACCATAGATTT 57.553 32.000 13.12 0.00 35.46 2.17
623 625 7.447374 TTGTGTCGAATTTTGACCATAGATT 57.553 32.000 13.12 0.00 35.46 2.40
624 626 7.447374 TTTGTGTCGAATTTTGACCATAGAT 57.553 32.000 13.12 0.00 35.46 1.98
625 627 6.869315 TTTGTGTCGAATTTTGACCATAGA 57.131 33.333 13.12 0.00 35.46 1.98
626 628 9.787532 ATATTTTGTGTCGAATTTTGACCATAG 57.212 29.630 13.12 0.00 35.46 2.23
653 655 9.892130 CTCTGTCCTAGTTTATTGGTCTTTATT 57.108 33.333 0.00 0.00 0.00 1.40
654 656 9.268282 TCTCTGTCCTAGTTTATTGGTCTTTAT 57.732 33.333 0.00 0.00 0.00 1.40
655 657 8.660295 TCTCTGTCCTAGTTTATTGGTCTTTA 57.340 34.615 0.00 0.00 0.00 1.85
656 658 7.554959 TCTCTGTCCTAGTTTATTGGTCTTT 57.445 36.000 0.00 0.00 0.00 2.52
657 659 7.741554 ATCTCTGTCCTAGTTTATTGGTCTT 57.258 36.000 0.00 0.00 0.00 3.01
658 660 8.062536 ACTATCTCTGTCCTAGTTTATTGGTCT 58.937 37.037 0.00 0.00 0.00 3.85
659 661 8.240267 ACTATCTCTGTCCTAGTTTATTGGTC 57.760 38.462 0.00 0.00 0.00 4.02
660 662 9.134055 GTACTATCTCTGTCCTAGTTTATTGGT 57.866 37.037 0.00 0.00 0.00 3.67
661 663 9.357161 AGTACTATCTCTGTCCTAGTTTATTGG 57.643 37.037 0.00 0.00 0.00 3.16
670 672 9.069082 GCTGAAATTAGTACTATCTCTGTCCTA 57.931 37.037 2.79 0.00 0.00 2.94
671 673 7.561722 TGCTGAAATTAGTACTATCTCTGTCCT 59.438 37.037 2.79 0.00 0.00 3.85
672 674 7.717568 TGCTGAAATTAGTACTATCTCTGTCC 58.282 38.462 2.79 0.00 0.00 4.02
673 675 9.587772 TTTGCTGAAATTAGTACTATCTCTGTC 57.412 33.333 2.79 0.00 0.00 3.51
674 676 9.944376 TTTTGCTGAAATTAGTACTATCTCTGT 57.056 29.630 2.79 0.00 0.00 3.41
696 698 4.880696 TGCCAACAGGGATTTTTCTTTTTG 59.119 37.500 0.00 0.00 40.01 2.44
702 704 3.554960 GGACTTGCCAACAGGGATTTTTC 60.555 47.826 0.00 0.00 40.01 2.29
772 825 1.202952 ACAGAGAGGTGACGAGGACTT 60.203 52.381 0.00 0.00 0.00 3.01
826 881 1.007336 CCGGCCGATACGAATGCTAC 61.007 60.000 30.73 0.00 0.00 3.58
856 911 2.586792 CTGCTACTGGGCTGGGTC 59.413 66.667 0.00 0.00 0.00 4.46
964 1019 2.284847 GGTTAGGGGTGGGGTCGA 60.285 66.667 0.00 0.00 0.00 4.20
987 1042 2.965226 GATCCATGGGAGGGGACGGA 62.965 65.000 13.02 0.00 35.67 4.69
1041 1096 3.936203 GTGGTGTGGCGGTCCTCA 61.936 66.667 0.00 0.00 33.79 3.86
1131 1186 4.047059 TGGTCGTCTTCGGCGTCC 62.047 66.667 6.85 0.00 43.10 4.79
1216 1271 2.122547 GGGCTCGGAGGGGGAATA 60.123 66.667 7.20 0.00 0.00 1.75
1429 1499 0.701147 CTTGGCCTTTCCTCCTTCCT 59.299 55.000 3.32 0.00 35.26 3.36
1473 1543 2.200899 TCATCACCATACGCATCAACG 58.799 47.619 0.00 0.00 39.50 4.10
1520 1590 0.315251 CTTCCTGTGCTCACGAGACA 59.685 55.000 0.00 0.00 0.00 3.41
1535 1605 1.562783 AGCACCAGACTCTACCTTCC 58.437 55.000 0.00 0.00 0.00 3.46
1682 1772 7.043565 ACATAATTCTGGGTTCATCAAATTGC 58.956 34.615 0.00 0.00 0.00 3.56
1696 1799 8.916654 CAACTATCGCTAACTACATAATTCTGG 58.083 37.037 0.00 0.00 0.00 3.86
1903 2073 6.404074 GCAAAGTATAAGATGCAAAGTCAGCT 60.404 38.462 0.00 0.00 38.63 4.24
1923 2097 3.741476 GAGCGCCACCCTGCAAAG 61.741 66.667 2.29 0.00 0.00 2.77
2408 2589 1.185618 TGCCGGCAGAGACACTACTT 61.186 55.000 29.03 0.00 0.00 2.24
2423 2604 0.679640 TGGTAAGCCCTGAAATGCCG 60.680 55.000 0.00 0.00 0.00 5.69
2718 3160 5.351465 GTGGGTCAATGTACAGAACTACATG 59.649 44.000 10.57 0.00 37.41 3.21
2981 3601 6.932356 ACATGACTGCAGTATATCCAAAAG 57.068 37.500 21.73 9.80 0.00 2.27
2993 3618 9.329913 GTACAATAAACTAAAACATGACTGCAG 57.670 33.333 13.48 13.48 0.00 4.41
3023 3648 9.337091 CAATCAAACAATTAAGTTTAGGTACCG 57.663 33.333 6.18 0.00 39.55 4.02
3240 3870 1.831736 AGGGGGTCTACAAACGATCAG 59.168 52.381 0.00 0.00 0.00 2.90
3300 3934 4.453480 ACCAAAATCTTTGAGTCCCTGA 57.547 40.909 0.69 0.00 0.00 3.86
3313 3947 7.039923 TCCTCATACGTAGGAGATACCAAAATC 60.040 40.741 32.61 0.00 38.24 2.17
3317 3951 5.068636 GTCCTCATACGTAGGAGATACCAA 58.931 45.833 32.61 11.90 43.81 3.67
3320 3954 6.174760 AGATGTCCTCATACGTAGGAGATAC 58.825 44.000 32.61 27.61 44.74 2.24
3412 4046 4.341783 GGTGGTGCAGGCTCAGCT 62.342 66.667 14.19 0.00 35.63 4.24
3610 4244 3.809832 GGATTTCCATCTCCATACGTGTG 59.190 47.826 5.16 5.16 35.64 3.82
3814 4460 0.684535 TCTCTTGGGCATTCACGTCA 59.315 50.000 0.00 0.00 0.00 4.35
3848 4494 0.179084 CCATCTGTGATAACCGCCGT 60.179 55.000 0.00 0.00 0.00 5.68
4123 4781 0.472925 TGACAGCCAGGTCCCAGTAA 60.473 55.000 0.00 0.00 36.97 2.24
4166 4827 2.027745 TGCCTTAGAACAGAAGCTGAGG 60.028 50.000 0.82 0.00 39.98 3.86
4244 4910 2.649331 ACGTTCGCACTACTAGCATT 57.351 45.000 0.00 0.00 0.00 3.56
4252 4918 2.607771 GGTCCAGTAAACGTTCGCACTA 60.608 50.000 0.00 0.00 0.00 2.74
4254 4920 0.509929 GGTCCAGTAAACGTTCGCAC 59.490 55.000 0.00 0.00 0.00 5.34
4258 4924 2.428888 AGTCGGTCCAGTAAACGTTC 57.571 50.000 0.00 0.00 0.00 3.95
4259 4925 2.887152 AGTAGTCGGTCCAGTAAACGTT 59.113 45.455 0.00 0.00 0.00 3.99
4260 4926 2.508526 AGTAGTCGGTCCAGTAAACGT 58.491 47.619 0.00 0.00 0.00 3.99
4300 4966 6.183360 ACAAGCATCAACAGTCTGAAAAATGA 60.183 34.615 6.91 3.57 0.00 2.57
4309 4975 5.410746 CAGACATAACAAGCATCAACAGTCT 59.589 40.000 0.00 0.00 33.32 3.24
4314 4980 5.869753 AGACAGACATAACAAGCATCAAC 57.130 39.130 0.00 0.00 0.00 3.18
4327 4993 6.323482 AGTGCTTAGATCATGTAGACAGACAT 59.677 38.462 0.00 0.00 40.78 3.06
4335 5004 4.208047 GCGTTCAGTGCTTAGATCATGTAG 59.792 45.833 0.00 0.00 0.00 2.74
4646 5326 3.127425 AGAAGCTTCGGCAAAACTAGT 57.873 42.857 20.43 0.00 44.74 2.57
4650 5330 1.335964 GGGAAGAAGCTTCGGCAAAAC 60.336 52.381 20.43 8.03 44.74 2.43
4668 5350 3.209410 CCTCAATGAGATTTTCGAGGGG 58.791 50.000 12.53 0.00 37.07 4.79
4695 5377 2.592102 AGGGACATGCTTGTGATGTT 57.408 45.000 10.37 0.00 35.79 2.71
4696 5378 2.592102 AAGGGACATGCTTGTGATGT 57.408 45.000 10.37 0.00 35.79 3.06
4697 5379 3.947910 AAAAGGGACATGCTTGTGATG 57.052 42.857 10.37 0.00 35.79 3.07
4699 5381 6.152661 CCTTATAAAAAGGGACATGCTTGTGA 59.847 38.462 10.37 0.00 35.79 3.58
4700 5382 6.071391 ACCTTATAAAAAGGGACATGCTTGTG 60.071 38.462 10.37 0.00 41.71 3.33
4701 5383 6.016555 ACCTTATAAAAAGGGACATGCTTGT 58.983 36.000 4.68 4.68 41.71 3.16
4702 5384 6.378280 AGACCTTATAAAAAGGGACATGCTTG 59.622 38.462 8.56 0.00 41.71 4.01
4703 5385 6.494059 AGACCTTATAAAAAGGGACATGCTT 58.506 36.000 8.56 0.00 41.71 3.91
4704 5386 6.079712 AGACCTTATAAAAAGGGACATGCT 57.920 37.500 8.56 0.00 41.71 3.79
4705 5387 5.885912 TGAGACCTTATAAAAAGGGACATGC 59.114 40.000 8.56 0.00 41.71 4.06
4707 5389 7.272144 AGTGAGACCTTATAAAAAGGGACAT 57.728 36.000 8.56 0.00 41.71 3.06
4708 5390 6.697641 AGTGAGACCTTATAAAAAGGGACA 57.302 37.500 8.56 3.10 41.71 4.02
4709 5391 7.997773 AAAGTGAGACCTTATAAAAAGGGAC 57.002 36.000 8.56 2.74 41.71 4.46
4718 5400 7.940137 TGCACCTTTTTAAAGTGAGACCTTATA 59.060 33.333 9.56 0.00 34.20 0.98
4719 5401 6.775629 TGCACCTTTTTAAAGTGAGACCTTAT 59.224 34.615 9.56 0.00 34.20 1.73
4720 5402 6.123651 TGCACCTTTTTAAAGTGAGACCTTA 58.876 36.000 9.56 0.00 34.20 2.69
4721 5403 4.953579 TGCACCTTTTTAAAGTGAGACCTT 59.046 37.500 9.56 0.00 34.20 3.50
4722 5404 4.532834 TGCACCTTTTTAAAGTGAGACCT 58.467 39.130 9.56 0.00 34.20 3.85
4724 5406 4.681483 GCATGCACCTTTTTAAAGTGAGAC 59.319 41.667 14.21 0.00 34.20 3.36
4725 5407 4.340666 TGCATGCACCTTTTTAAAGTGAGA 59.659 37.500 18.46 0.00 34.20 3.27
4726 5408 4.619973 TGCATGCACCTTTTTAAAGTGAG 58.380 39.130 18.46 0.66 34.20 3.51
4727 5409 4.662468 TGCATGCACCTTTTTAAAGTGA 57.338 36.364 18.46 0.00 34.20 3.41
4728 5410 5.272167 CATGCATGCACCTTTTTAAAGTG 57.728 39.130 25.37 8.90 34.20 3.16
4743 5425 3.064682 CCAATGAAATGGTTGCATGCATG 59.935 43.478 23.37 22.70 35.65 4.06
4744 5426 3.275143 CCAATGAAATGGTTGCATGCAT 58.725 40.909 23.37 4.78 35.65 3.96
4745 5427 2.701107 CCAATGAAATGGTTGCATGCA 58.299 42.857 18.46 18.46 35.65 3.96
4755 5437 6.649973 TGGCTTTCAATGTAACCAATGAAATG 59.350 34.615 6.43 3.71 44.99 2.32
4757 5439 6.166984 TGGCTTTCAATGTAACCAATGAAA 57.833 33.333 5.96 5.96 44.31 2.69
4758 5440 5.798125 TGGCTTTCAATGTAACCAATGAA 57.202 34.783 0.00 0.00 38.42 2.57
4759 5441 5.999205 ATGGCTTTCAATGTAACCAATGA 57.001 34.783 0.00 0.00 0.00 2.57
4761 5443 6.112927 ACAATGGCTTTCAATGTAACCAAT 57.887 33.333 0.00 0.00 37.70 3.16
4762 5444 5.543507 ACAATGGCTTTCAATGTAACCAA 57.456 34.783 0.00 0.00 37.70 3.67
4763 5445 5.163364 ACAACAATGGCTTTCAATGTAACCA 60.163 36.000 0.00 0.00 38.45 3.67
4764 5446 5.296748 ACAACAATGGCTTTCAATGTAACC 58.703 37.500 0.00 0.00 38.45 2.85
4765 5447 6.292811 CCAACAACAATGGCTTTCAATGTAAC 60.293 38.462 0.00 0.00 38.45 2.50
4766 5448 5.757320 CCAACAACAATGGCTTTCAATGTAA 59.243 36.000 0.00 0.00 38.45 2.41
4767 5449 5.163364 ACCAACAACAATGGCTTTCAATGTA 60.163 36.000 0.00 0.00 38.45 2.29
4768 5450 4.128643 CCAACAACAATGGCTTTCAATGT 58.871 39.130 0.00 0.00 40.93 2.71
4770 5452 4.128643 CACCAACAACAATGGCTTTCAAT 58.871 39.130 0.00 0.00 41.89 2.57
4771 5453 3.529533 CACCAACAACAATGGCTTTCAA 58.470 40.909 0.00 0.00 41.89 2.69
4772 5454 2.741228 GCACCAACAACAATGGCTTTCA 60.741 45.455 0.00 0.00 41.89 2.69
4773 5455 1.866601 GCACCAACAACAATGGCTTTC 59.133 47.619 0.00 0.00 41.89 2.62
4774 5456 1.474855 GGCACCAACAACAATGGCTTT 60.475 47.619 0.00 0.00 41.89 3.51
4775 5457 0.106521 GGCACCAACAACAATGGCTT 59.893 50.000 0.00 0.00 41.89 4.35
4777 5459 0.035176 ATGGCACCAACAACAATGGC 59.965 50.000 0.00 0.00 41.89 4.40
4778 5460 1.608542 CCATGGCACCAACAACAATGG 60.609 52.381 0.00 0.00 43.84 3.16
4779 5461 1.798283 CCATGGCACCAACAACAATG 58.202 50.000 0.00 0.00 0.00 2.82
4781 5463 1.047596 AGCCATGGCACCAACAACAA 61.048 50.000 37.18 0.00 44.88 2.83
4782 5464 1.457267 AGCCATGGCACCAACAACA 60.457 52.632 37.18 0.00 44.88 3.33
4783 5465 1.005867 CAGCCATGGCACCAACAAC 60.006 57.895 37.18 5.77 44.88 3.32
4784 5466 0.758310 TTCAGCCATGGCACCAACAA 60.758 50.000 37.18 16.98 44.88 2.83
4785 5467 0.758310 TTTCAGCCATGGCACCAACA 60.758 50.000 37.18 13.92 44.88 3.33
4788 5470 1.350071 ATTTTTCAGCCATGGCACCA 58.650 45.000 37.18 18.30 44.88 4.17
4790 5472 6.035975 GTGTATTAATTTTTCAGCCATGGCAC 59.964 38.462 37.18 21.47 44.88 5.01
4793 5475 8.034215 TGAAGTGTATTAATTTTTCAGCCATGG 58.966 33.333 7.63 7.63 0.00 3.66
4794 5476 8.984891 TGAAGTGTATTAATTTTTCAGCCATG 57.015 30.769 0.00 0.00 0.00 3.66
4795 5477 9.590451 CATGAAGTGTATTAATTTTTCAGCCAT 57.410 29.630 0.00 0.00 0.00 4.40
4796 5478 7.545265 GCATGAAGTGTATTAATTTTTCAGCCA 59.455 33.333 0.00 0.00 0.00 4.75
4797 5479 7.253750 CGCATGAAGTGTATTAATTTTTCAGCC 60.254 37.037 0.00 0.00 0.00 4.85
4799 5481 8.577939 CACGCATGAAGTGTATTAATTTTTCAG 58.422 33.333 12.00 0.00 39.40 3.02
4800 5482 8.446489 CACGCATGAAGTGTATTAATTTTTCA 57.554 30.769 12.00 0.28 39.40 2.69
4827 5509 2.545537 TGCATGCAGCCAATGAAAAA 57.454 40.000 18.46 0.00 44.83 1.94
4829 5511 1.276705 ACATGCATGCAGCCAATGAAA 59.723 42.857 26.69 0.00 44.83 2.69
4830 5512 0.899019 ACATGCATGCAGCCAATGAA 59.101 45.000 26.69 0.00 44.83 2.57
4831 5513 0.174617 CACATGCATGCAGCCAATGA 59.825 50.000 26.69 0.00 44.83 2.57
4833 5515 0.459899 CTCACATGCATGCAGCCAAT 59.540 50.000 26.69 5.62 44.83 3.16
4835 5517 1.001887 TCTCACATGCATGCAGCCA 60.002 52.632 26.69 8.75 44.83 4.75
4837 5519 0.658368 CTCTCTCACATGCATGCAGC 59.342 55.000 26.69 0.00 45.96 5.25
4840 5522 0.377554 GCACTCTCTCACATGCATGC 59.622 55.000 26.53 11.82 38.00 4.06
4841 5523 1.734163 TGCACTCTCTCACATGCATG 58.266 50.000 25.09 25.09 42.92 4.06
4844 5526 4.186926 TCTTAATGCACTCTCTCACATGC 58.813 43.478 0.00 0.00 38.59 4.06
4846 5528 8.016301 TCTATTCTTAATGCACTCTCTCACAT 57.984 34.615 0.00 0.00 0.00 3.21
4847 5529 7.410120 TCTATTCTTAATGCACTCTCTCACA 57.590 36.000 0.00 0.00 0.00 3.58
4848 5530 8.885494 ATTCTATTCTTAATGCACTCTCTCAC 57.115 34.615 0.00 0.00 0.00 3.51
4849 5531 9.322773 CAATTCTATTCTTAATGCACTCTCTCA 57.677 33.333 0.00 0.00 0.00 3.27
4850 5532 9.539825 TCAATTCTATTCTTAATGCACTCTCTC 57.460 33.333 0.00 0.00 0.00 3.20
4853 5535 9.896645 TCTTCAATTCTATTCTTAATGCACTCT 57.103 29.630 0.00 0.00 0.00 3.24
4869 5551 8.800332 AGTTGCTCACATTAATTCTTCAATTCT 58.200 29.630 0.00 0.00 33.95 2.40
4870 5552 8.976986 AGTTGCTCACATTAATTCTTCAATTC 57.023 30.769 0.00 0.00 33.95 2.17
4881 5563 9.448438 AGACACATAATAAGTTGCTCACATTAA 57.552 29.630 0.00 0.00 0.00 1.40
4882 5564 9.448438 AAGACACATAATAAGTTGCTCACATTA 57.552 29.630 0.00 0.00 0.00 1.90
4883 5565 7.928307 AGACACATAATAAGTTGCTCACATT 57.072 32.000 0.00 0.00 0.00 2.71
4884 5566 7.148188 CCAAGACACATAATAAGTTGCTCACAT 60.148 37.037 0.00 0.00 0.00 3.21
4885 5567 6.149308 CCAAGACACATAATAAGTTGCTCACA 59.851 38.462 0.00 0.00 0.00 3.58
4886 5568 6.149474 ACCAAGACACATAATAAGTTGCTCAC 59.851 38.462 0.00 0.00 0.00 3.51
4887 5569 6.237901 ACCAAGACACATAATAAGTTGCTCA 58.762 36.000 0.00 0.00 0.00 4.26
4888 5570 6.743575 ACCAAGACACATAATAAGTTGCTC 57.256 37.500 0.00 0.00 0.00 4.26
4889 5571 7.524717 AAACCAAGACACATAATAAGTTGCT 57.475 32.000 0.00 0.00 0.00 3.91
4890 5572 9.341899 CTTAAACCAAGACACATAATAAGTTGC 57.658 33.333 0.00 0.00 36.22 4.17
4898 5580 9.796120 CAACTTTTCTTAAACCAAGACACATAA 57.204 29.630 0.00 0.00 43.09 1.90
4899 5581 8.962679 ACAACTTTTCTTAAACCAAGACACATA 58.037 29.630 0.00 0.00 43.09 2.29
4900 5582 7.836842 ACAACTTTTCTTAAACCAAGACACAT 58.163 30.769 0.00 0.00 43.09 3.21
4901 5583 7.175990 AGACAACTTTTCTTAAACCAAGACACA 59.824 33.333 0.00 0.00 43.09 3.72
4902 5584 7.535997 AGACAACTTTTCTTAAACCAAGACAC 58.464 34.615 0.00 0.00 43.09 3.67
4903 5585 7.696992 AGACAACTTTTCTTAAACCAAGACA 57.303 32.000 0.00 0.00 43.09 3.41
4904 5586 8.981724 AAAGACAACTTTTCTTAAACCAAGAC 57.018 30.769 0.00 0.00 42.79 3.01
4906 5588 9.516314 CCTAAAGACAACTTTTCTTAAACCAAG 57.484 33.333 0.00 0.00 42.79 3.61
4907 5589 7.977293 GCCTAAAGACAACTTTTCTTAAACCAA 59.023 33.333 0.00 0.00 42.79 3.67
4908 5590 7.417003 GGCCTAAAGACAACTTTTCTTAAACCA 60.417 37.037 0.00 0.00 42.79 3.67
4909 5591 6.921857 GGCCTAAAGACAACTTTTCTTAAACC 59.078 38.462 0.00 0.00 42.79 3.27
4910 5592 7.713750 AGGCCTAAAGACAACTTTTCTTAAAC 58.286 34.615 1.29 0.00 42.79 2.01
4911 5593 7.891498 AGGCCTAAAGACAACTTTTCTTAAA 57.109 32.000 1.29 0.00 42.79 1.52
4912 5594 8.983702 TTAGGCCTAAAGACAACTTTTCTTAA 57.016 30.769 23.21 0.00 42.79 1.85
4914 5596 9.582648 TTATTAGGCCTAAAGACAACTTTTCTT 57.417 29.630 28.50 9.73 42.79 2.52
4915 5597 9.582648 TTTATTAGGCCTAAAGACAACTTTTCT 57.417 29.630 28.50 10.16 42.79 2.52
4918 5600 8.967918 GGATTTATTAGGCCTAAAGACAACTTT 58.032 33.333 28.50 11.58 46.36 2.66
4919 5601 7.282450 CGGATTTATTAGGCCTAAAGACAACTT 59.718 37.037 28.50 12.30 38.05 2.66
4920 5602 6.766467 CGGATTTATTAGGCCTAAAGACAACT 59.234 38.462 28.50 13.03 0.00 3.16
4921 5603 6.017357 CCGGATTTATTAGGCCTAAAGACAAC 60.017 42.308 28.50 16.97 0.00 3.32
4922 5604 6.059484 CCGGATTTATTAGGCCTAAAGACAA 58.941 40.000 28.50 17.75 0.00 3.18
4923 5605 5.367352 TCCGGATTTATTAGGCCTAAAGACA 59.633 40.000 28.50 13.30 0.00 3.41
4924 5606 5.699915 GTCCGGATTTATTAGGCCTAAAGAC 59.300 44.000 28.50 18.43 0.00 3.01
4925 5607 5.510179 CGTCCGGATTTATTAGGCCTAAAGA 60.510 44.000 28.50 16.79 0.00 2.52
4926 5608 4.689345 CGTCCGGATTTATTAGGCCTAAAG 59.311 45.833 28.50 13.19 0.00 1.85
4927 5609 4.503643 CCGTCCGGATTTATTAGGCCTAAA 60.504 45.833 28.50 15.28 37.50 1.85
4928 5610 3.007182 CCGTCCGGATTTATTAGGCCTAA 59.993 47.826 27.11 27.11 37.50 2.69
4929 5611 2.564062 CCGTCCGGATTTATTAGGCCTA 59.436 50.000 8.91 8.91 37.50 3.93
4930 5612 1.346722 CCGTCCGGATTTATTAGGCCT 59.653 52.381 11.78 11.78 37.50 5.19
4931 5613 1.345415 TCCGTCCGGATTTATTAGGCC 59.655 52.381 7.81 0.00 39.76 5.19
4932 5614 2.612221 CCTCCGTCCGGATTTATTAGGC 60.612 54.545 7.81 0.00 44.24 3.93
4933 5615 2.028385 CCCTCCGTCCGGATTTATTAGG 60.028 54.545 7.81 9.20 44.24 2.69
4934 5616 2.895404 TCCCTCCGTCCGGATTTATTAG 59.105 50.000 7.81 0.00 44.24 1.73
4935 5617 2.895404 CTCCCTCCGTCCGGATTTATTA 59.105 50.000 7.81 0.00 44.24 0.98
4936 5618 1.692519 CTCCCTCCGTCCGGATTTATT 59.307 52.381 7.81 0.00 44.24 1.40
4937 5619 1.339097 CTCCCTCCGTCCGGATTTAT 58.661 55.000 7.81 0.00 44.24 1.40
4938 5620 0.032813 ACTCCCTCCGTCCGGATTTA 60.033 55.000 7.81 0.00 44.24 1.40
4939 5621 0.032813 TACTCCCTCCGTCCGGATTT 60.033 55.000 7.81 0.00 44.24 2.17
4940 5622 0.754587 GTACTCCCTCCGTCCGGATT 60.755 60.000 7.81 0.00 44.24 3.01
4941 5623 1.152798 GTACTCCCTCCGTCCGGAT 60.153 63.158 7.81 0.00 44.24 4.18
4942 5624 2.273449 GTACTCCCTCCGTCCGGA 59.727 66.667 0.00 0.00 42.90 5.14
4943 5625 2.832201 GGTACTCCCTCCGTCCGG 60.832 72.222 0.00 0.00 0.00 5.14
4944 5626 2.119655 CAGGTACTCCCTCCGTCCG 61.120 68.421 0.00 0.00 43.86 4.79
4945 5627 1.000107 ACAGGTACTCCCTCCGTCC 60.000 63.158 0.00 0.00 43.86 4.79
4946 5628 0.034283 AGACAGGTACTCCCTCCGTC 60.034 60.000 0.00 0.00 43.86 4.79
4947 5629 0.323542 CAGACAGGTACTCCCTCCGT 60.324 60.000 0.00 0.00 43.86 4.69
4948 5630 1.038130 CCAGACAGGTACTCCCTCCG 61.038 65.000 0.00 0.00 43.86 4.63
4949 5631 0.688087 CCCAGACAGGTACTCCCTCC 60.688 65.000 0.00 0.00 43.86 4.30
4950 5632 0.688087 CCCCAGACAGGTACTCCCTC 60.688 65.000 0.00 0.00 43.86 4.30
4952 5634 1.689582 CCCCCAGACAGGTACTCCC 60.690 68.421 0.00 0.00 34.60 4.30
4953 5635 2.368011 GCCCCCAGACAGGTACTCC 61.368 68.421 0.00 0.00 34.60 3.85
4954 5636 0.983378 ATGCCCCCAGACAGGTACTC 60.983 60.000 0.00 0.00 34.60 2.59
4955 5637 1.082954 ATGCCCCCAGACAGGTACT 59.917 57.895 0.00 0.00 43.88 2.73
4956 5638 1.224592 CATGCCCCCAGACAGGTAC 59.775 63.158 0.00 0.00 34.66 3.34
4957 5639 0.327480 ATCATGCCCCCAGACAGGTA 60.327 55.000 0.00 0.00 34.66 3.08
4958 5640 1.217057 AATCATGCCCCCAGACAGGT 61.217 55.000 0.00 0.00 34.66 4.00
4959 5641 0.754217 CAATCATGCCCCCAGACAGG 60.754 60.000 0.00 0.00 37.03 4.00
4960 5642 0.033796 ACAATCATGCCCCCAGACAG 60.034 55.000 0.00 0.00 0.00 3.51
4961 5643 0.409092 AACAATCATGCCCCCAGACA 59.591 50.000 0.00 0.00 0.00 3.41
4962 5644 1.106285 GAACAATCATGCCCCCAGAC 58.894 55.000 0.00 0.00 0.00 3.51
4963 5645 0.394216 CGAACAATCATGCCCCCAGA 60.394 55.000 0.00 0.00 0.00 3.86
4964 5646 1.386525 CCGAACAATCATGCCCCCAG 61.387 60.000 0.00 0.00 0.00 4.45
4965 5647 1.379710 CCGAACAATCATGCCCCCA 60.380 57.895 0.00 0.00 0.00 4.96
4966 5648 1.077068 TCCGAACAATCATGCCCCC 60.077 57.895 0.00 0.00 0.00 5.40
5006 5697 3.033909 ACTGCTATGACTGGCACTGATA 58.966 45.455 0.00 0.00 33.43 2.15
5116 5820 4.653801 ACAAAAACCAAAGGGAAGTATGCT 59.346 37.500 0.00 0.00 38.05 3.79
5121 5825 3.605634 GCAACAAAAACCAAAGGGAAGT 58.394 40.909 0.00 0.00 38.05 3.01
5122 5826 2.942376 GGCAACAAAAACCAAAGGGAAG 59.058 45.455 0.00 0.00 38.05 3.46
5123 5827 2.992593 GGCAACAAAAACCAAAGGGAA 58.007 42.857 0.00 0.00 38.05 3.97
5124 5828 2.700722 GGCAACAAAAACCAAAGGGA 57.299 45.000 0.00 0.00 38.05 4.20
5144 5848 1.078848 GAAGCAGATCACCAGCGGT 60.079 57.895 0.00 0.00 35.62 5.68
5145 5849 0.809241 GAGAAGCAGATCACCAGCGG 60.809 60.000 0.00 0.00 0.00 5.52
5146 5850 0.108472 TGAGAAGCAGATCACCAGCG 60.108 55.000 0.00 0.00 0.00 5.18
5147 5851 3.849002 TGAGAAGCAGATCACCAGC 57.151 52.632 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.