Multiple sequence alignment - TraesCS5B01G164900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G164900 | chr5B | 100.000 | 6572 | 0 | 0 | 1 | 6572 | 304817881 | 304824452 | 0.000000e+00 | 12137.0 |
1 | TraesCS5B01G164900 | chr5B | 80.978 | 941 | 147 | 18 | 1 | 915 | 421722922 | 421721988 | 0.000000e+00 | 717.0 |
2 | TraesCS5B01G164900 | chr5B | 87.055 | 309 | 23 | 9 | 4541 | 4840 | 304822117 | 304822417 | 3.800000e-87 | 333.0 |
3 | TraesCS5B01G164900 | chr5B | 87.055 | 309 | 23 | 9 | 4237 | 4537 | 304822421 | 304822720 | 3.800000e-87 | 333.0 |
4 | TraesCS5B01G164900 | chr5D | 94.946 | 5164 | 173 | 38 | 1000 | 6104 | 269237739 | 269242873 | 0.000000e+00 | 8010.0 |
5 | TraesCS5B01G164900 | chr5D | 94.488 | 254 | 12 | 2 | 6294 | 6546 | 47520519 | 47520267 | 2.220000e-104 | 390.0 |
6 | TraesCS5B01G164900 | chr5D | 91.039 | 279 | 22 | 3 | 6294 | 6572 | 269243045 | 269243320 | 2.240000e-99 | 374.0 |
7 | TraesCS5B01G164900 | chr5D | 87.708 | 301 | 21 | 8 | 4549 | 4840 | 269241016 | 269241309 | 2.940000e-88 | 337.0 |
8 | TraesCS5B01G164900 | chr5D | 98.333 | 60 | 1 | 0 | 6236 | 6295 | 560874508 | 560874449 | 9.010000e-19 | 106.0 |
9 | TraesCS5B01G164900 | chr5A | 95.180 | 2531 | 100 | 11 | 1000 | 3513 | 357565086 | 357567611 | 0.000000e+00 | 3978.0 |
10 | TraesCS5B01G164900 | chr5A | 95.799 | 976 | 33 | 3 | 4761 | 5734 | 357569370 | 357570339 | 0.000000e+00 | 1568.0 |
11 | TraesCS5B01G164900 | chr5A | 94.532 | 695 | 35 | 3 | 3525 | 4218 | 357568027 | 357568719 | 0.000000e+00 | 1070.0 |
12 | TraesCS5B01G164900 | chr5A | 82.460 | 878 | 128 | 15 | 1 | 866 | 458282318 | 458281455 | 0.000000e+00 | 745.0 |
13 | TraesCS5B01G164900 | chr5A | 95.154 | 454 | 20 | 2 | 4278 | 4729 | 357568921 | 357569374 | 0.000000e+00 | 715.0 |
14 | TraesCS5B01G164900 | chr5A | 89.195 | 435 | 19 | 10 | 5694 | 6104 | 357570355 | 357570785 | 9.770000e-143 | 518.0 |
15 | TraesCS5B01G164900 | chr5A | 91.186 | 295 | 22 | 2 | 3016 | 3306 | 611029591 | 611029885 | 1.330000e-106 | 398.0 |
16 | TraesCS5B01G164900 | chr5A | 90.909 | 297 | 23 | 2 | 3014 | 3306 | 660449496 | 660449792 | 4.780000e-106 | 396.0 |
17 | TraesCS5B01G164900 | chr5A | 88.346 | 266 | 19 | 5 | 4583 | 4840 | 357568921 | 357569182 | 6.400000e-80 | 309.0 |
18 | TraesCS5B01G164900 | chr5A | 87.938 | 257 | 29 | 2 | 6294 | 6548 | 577950108 | 577950364 | 1.070000e-77 | 302.0 |
19 | TraesCS5B01G164900 | chr5A | 97.561 | 41 | 1 | 0 | 3310 | 3350 | 321924725 | 321924685 | 3.290000e-08 | 71.3 |
20 | TraesCS5B01G164900 | chrUn | 80.101 | 990 | 153 | 27 | 1 | 969 | 359466747 | 359467713 | 0.000000e+00 | 697.0 |
21 | TraesCS5B01G164900 | chrUn | 80.509 | 903 | 131 | 21 | 4 | 898 | 35565491 | 35566356 | 0.000000e+00 | 651.0 |
22 | TraesCS5B01G164900 | chrUn | 80.000 | 680 | 103 | 19 | 307 | 969 | 350568222 | 350568885 | 7.710000e-129 | 472.0 |
23 | TraesCS5B01G164900 | chrUn | 98.333 | 60 | 1 | 0 | 6236 | 6295 | 439559180 | 439559239 | 9.010000e-19 | 106.0 |
24 | TraesCS5B01G164900 | chr7A | 80.101 | 990 | 153 | 27 | 1 | 969 | 31535636 | 31536602 | 0.000000e+00 | 697.0 |
25 | TraesCS5B01G164900 | chr7A | 79.596 | 990 | 158 | 27 | 1 | 969 | 31554077 | 31555043 | 0.000000e+00 | 669.0 |
26 | TraesCS5B01G164900 | chr7A | 80.000 | 680 | 103 | 19 | 307 | 969 | 31517498 | 31518161 | 7.710000e-129 | 472.0 |
27 | TraesCS5B01G164900 | chr7A | 90.429 | 303 | 24 | 3 | 3009 | 3306 | 616470006 | 616469704 | 1.720000e-105 | 394.0 |
28 | TraesCS5B01G164900 | chr1A | 81.914 | 857 | 119 | 21 | 135 | 974 | 495134457 | 495135294 | 0.000000e+00 | 691.0 |
29 | TraesCS5B01G164900 | chr1A | 80.215 | 930 | 144 | 25 | 1 | 921 | 125990935 | 125990037 | 0.000000e+00 | 662.0 |
30 | TraesCS5B01G164900 | chr1A | 91.525 | 295 | 20 | 3 | 3017 | 3306 | 2651306 | 2651600 | 1.030000e-107 | 401.0 |
31 | TraesCS5B01G164900 | chr1A | 91.497 | 294 | 21 | 2 | 3017 | 3306 | 350489591 | 350489884 | 1.030000e-107 | 401.0 |
32 | TraesCS5B01G164900 | chr1A | 92.520 | 254 | 15 | 4 | 6294 | 6546 | 500075713 | 500075963 | 1.740000e-95 | 361.0 |
33 | TraesCS5B01G164900 | chr3B | 80.475 | 927 | 139 | 22 | 3 | 915 | 558191032 | 558190134 | 0.000000e+00 | 671.0 |
34 | TraesCS5B01G164900 | chr3B | 82.361 | 703 | 99 | 17 | 227 | 915 | 167776962 | 167777653 | 7.340000e-164 | 588.0 |
35 | TraesCS5B01G164900 | chr3B | 88.327 | 257 | 26 | 3 | 6294 | 6546 | 765087468 | 765087212 | 8.280000e-79 | 305.0 |
36 | TraesCS5B01G164900 | chr3B | 98.333 | 60 | 1 | 0 | 6236 | 6295 | 201516719 | 201516660 | 9.010000e-19 | 106.0 |
37 | TraesCS5B01G164900 | chr3B | 95.455 | 44 | 1 | 1 | 3310 | 3352 | 502811577 | 502811620 | 1.180000e-07 | 69.4 |
38 | TraesCS5B01G164900 | chr1B | 80.903 | 864 | 128 | 20 | 52 | 898 | 606582116 | 606582959 | 0.000000e+00 | 647.0 |
39 | TraesCS5B01G164900 | chr1B | 89.412 | 255 | 22 | 4 | 6293 | 6546 | 385174887 | 385175137 | 3.820000e-82 | 316.0 |
40 | TraesCS5B01G164900 | chr1B | 87.938 | 257 | 30 | 1 | 6294 | 6549 | 69353471 | 69353215 | 1.070000e-77 | 302.0 |
41 | TraesCS5B01G164900 | chr6D | 79.221 | 924 | 142 | 28 | 1 | 899 | 389918689 | 389919587 | 1.220000e-166 | 597.0 |
42 | TraesCS5B01G164900 | chr6D | 84.127 | 378 | 58 | 1 | 48 | 425 | 446928809 | 446928434 | 1.350000e-96 | 364.0 |
43 | TraesCS5B01G164900 | chr6D | 97.500 | 40 | 1 | 0 | 3311 | 3350 | 289507535 | 289507496 | 1.180000e-07 | 69.4 |
44 | TraesCS5B01G164900 | chr6D | 97.500 | 40 | 1 | 0 | 3311 | 3350 | 423771142 | 423771103 | 1.180000e-07 | 69.4 |
45 | TraesCS5B01G164900 | chr1D | 80.976 | 799 | 100 | 35 | 135 | 912 | 397637979 | 397638746 | 2.640000e-163 | 586.0 |
46 | TraesCS5B01G164900 | chr1D | 81.603 | 549 | 77 | 12 | 48 | 576 | 433507245 | 433506701 | 3.640000e-117 | 433.0 |
47 | TraesCS5B01G164900 | chr1D | 98.333 | 60 | 1 | 0 | 6236 | 6295 | 206075325 | 206075384 | 9.010000e-19 | 106.0 |
48 | TraesCS5B01G164900 | chr1D | 96.667 | 60 | 2 | 0 | 6236 | 6295 | 254500038 | 254499979 | 4.190000e-17 | 100.0 |
49 | TraesCS5B01G164900 | chr1D | 97.500 | 40 | 1 | 0 | 3311 | 3350 | 80020536 | 80020497 | 1.180000e-07 | 69.4 |
50 | TraesCS5B01G164900 | chr6A | 83.553 | 456 | 64 | 7 | 468 | 913 | 551626998 | 551627452 | 3.670000e-112 | 416.0 |
51 | TraesCS5B01G164900 | chr4A | 89.935 | 308 | 26 | 3 | 3003 | 3306 | 532067932 | 532067626 | 6.180000e-105 | 392.0 |
52 | TraesCS5B01G164900 | chr4A | 87.988 | 333 | 28 | 10 | 2980 | 3306 | 478199709 | 478200035 | 3.720000e-102 | 383.0 |
53 | TraesCS5B01G164900 | chr4A | 90.588 | 255 | 19 | 2 | 6294 | 6547 | 147557761 | 147557511 | 3.800000e-87 | 333.0 |
54 | TraesCS5B01G164900 | chr4A | 98.333 | 60 | 1 | 0 | 6236 | 6295 | 538222020 | 538221961 | 9.010000e-19 | 106.0 |
55 | TraesCS5B01G164900 | chr3A | 77.508 | 658 | 116 | 19 | 1 | 643 | 428567282 | 428567922 | 3.740000e-97 | 366.0 |
56 | TraesCS5B01G164900 | chr2A | 90.625 | 256 | 22 | 2 | 6293 | 6546 | 744373968 | 744374223 | 8.160000e-89 | 339.0 |
57 | TraesCS5B01G164900 | chr2D | 98.333 | 60 | 1 | 0 | 6236 | 6295 | 638826399 | 638826458 | 9.010000e-19 | 106.0 |
58 | TraesCS5B01G164900 | chr4D | 90.123 | 81 | 6 | 2 | 6236 | 6316 | 66951166 | 66951244 | 3.240000e-18 | 104.0 |
59 | TraesCS5B01G164900 | chr4D | 97.500 | 40 | 1 | 0 | 3311 | 3350 | 98888302 | 98888341 | 1.180000e-07 | 69.4 |
60 | TraesCS5B01G164900 | chr4D | 97.500 | 40 | 1 | 0 | 3311 | 3350 | 298773239 | 298773278 | 1.180000e-07 | 69.4 |
61 | TraesCS5B01G164900 | chr7B | 98.276 | 58 | 1 | 0 | 6237 | 6294 | 102631591 | 102631648 | 1.170000e-17 | 102.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G164900 | chr5B | 304817881 | 304824452 | 6571 | False | 4267.666667 | 12137 | 91.370000 | 1 | 6572 | 3 | chr5B.!!$F1 | 6571 |
1 | TraesCS5B01G164900 | chr5B | 421721988 | 421722922 | 934 | True | 717.000000 | 717 | 80.978000 | 1 | 915 | 1 | chr5B.!!$R1 | 914 |
2 | TraesCS5B01G164900 | chr5D | 269237739 | 269243320 | 5581 | False | 2907.000000 | 8010 | 91.231000 | 1000 | 6572 | 3 | chr5D.!!$F1 | 5572 |
3 | TraesCS5B01G164900 | chr5A | 357565086 | 357570785 | 5699 | False | 1359.666667 | 3978 | 93.034333 | 1000 | 6104 | 6 | chr5A.!!$F4 | 5104 |
4 | TraesCS5B01G164900 | chr5A | 458281455 | 458282318 | 863 | True | 745.000000 | 745 | 82.460000 | 1 | 866 | 1 | chr5A.!!$R2 | 865 |
5 | TraesCS5B01G164900 | chrUn | 359466747 | 359467713 | 966 | False | 697.000000 | 697 | 80.101000 | 1 | 969 | 1 | chrUn.!!$F3 | 968 |
6 | TraesCS5B01G164900 | chrUn | 35565491 | 35566356 | 865 | False | 651.000000 | 651 | 80.509000 | 4 | 898 | 1 | chrUn.!!$F1 | 894 |
7 | TraesCS5B01G164900 | chrUn | 350568222 | 350568885 | 663 | False | 472.000000 | 472 | 80.000000 | 307 | 969 | 1 | chrUn.!!$F2 | 662 |
8 | TraesCS5B01G164900 | chr7A | 31535636 | 31536602 | 966 | False | 697.000000 | 697 | 80.101000 | 1 | 969 | 1 | chr7A.!!$F2 | 968 |
9 | TraesCS5B01G164900 | chr7A | 31554077 | 31555043 | 966 | False | 669.000000 | 669 | 79.596000 | 1 | 969 | 1 | chr7A.!!$F3 | 968 |
10 | TraesCS5B01G164900 | chr7A | 31517498 | 31518161 | 663 | False | 472.000000 | 472 | 80.000000 | 307 | 969 | 1 | chr7A.!!$F1 | 662 |
11 | TraesCS5B01G164900 | chr1A | 495134457 | 495135294 | 837 | False | 691.000000 | 691 | 81.914000 | 135 | 974 | 1 | chr1A.!!$F3 | 839 |
12 | TraesCS5B01G164900 | chr1A | 125990037 | 125990935 | 898 | True | 662.000000 | 662 | 80.215000 | 1 | 921 | 1 | chr1A.!!$R1 | 920 |
13 | TraesCS5B01G164900 | chr3B | 558190134 | 558191032 | 898 | True | 671.000000 | 671 | 80.475000 | 3 | 915 | 1 | chr3B.!!$R2 | 912 |
14 | TraesCS5B01G164900 | chr3B | 167776962 | 167777653 | 691 | False | 588.000000 | 588 | 82.361000 | 227 | 915 | 1 | chr3B.!!$F1 | 688 |
15 | TraesCS5B01G164900 | chr1B | 606582116 | 606582959 | 843 | False | 647.000000 | 647 | 80.903000 | 52 | 898 | 1 | chr1B.!!$F2 | 846 |
16 | TraesCS5B01G164900 | chr6D | 389918689 | 389919587 | 898 | False | 597.000000 | 597 | 79.221000 | 1 | 899 | 1 | chr6D.!!$F1 | 898 |
17 | TraesCS5B01G164900 | chr1D | 397637979 | 397638746 | 767 | False | 586.000000 | 586 | 80.976000 | 135 | 912 | 1 | chr1D.!!$F2 | 777 |
18 | TraesCS5B01G164900 | chr1D | 433506701 | 433507245 | 544 | True | 433.000000 | 433 | 81.603000 | 48 | 576 | 1 | chr1D.!!$R3 | 528 |
19 | TraesCS5B01G164900 | chr3A | 428567282 | 428567922 | 640 | False | 366.000000 | 366 | 77.508000 | 1 | 643 | 1 | chr3A.!!$F1 | 642 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
992 | 1071 | 0.319555 | TCGCCAGTTCACACTACTGC | 60.320 | 55.000 | 0.00 | 0.0 | 41.28 | 4.40 | F |
1606 | 1688 | 0.305922 | CCATTCCGCTGCTTCGATTC | 59.694 | 55.000 | 0.00 | 0.0 | 0.00 | 2.52 | F |
2101 | 2188 | 0.326264 | AGTGGCCGAAGCATTCTTCT | 59.674 | 50.000 | 0.00 | 0.0 | 44.75 | 2.85 | F |
2686 | 2773 | 0.179015 | TTTGCCGACTGCTTGGGTTA | 60.179 | 50.000 | 0.00 | 0.0 | 42.00 | 2.85 | F |
2710 | 2797 | 1.002888 | CAGAAGATGCCAGGTCAGTGT | 59.997 | 52.381 | 0.00 | 0.0 | 0.00 | 3.55 | F |
3414 | 3544 | 1.350684 | TCCATTGTTGTCTAGCCAGCA | 59.649 | 47.619 | 0.00 | 0.0 | 0.00 | 4.41 | F |
3517 | 3647 | 2.744741 | TGGTTGTGGTGTATATGTTGCG | 59.255 | 45.455 | 0.00 | 0.0 | 0.00 | 4.85 | F |
3796 | 4331 | 3.133901 | TCACTGAACAGTTTGAGCCAGTA | 59.866 | 43.478 | 4.63 | 0.0 | 40.20 | 2.74 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1855 | 1942 | 1.150135 | TCCTGGAACTCCTTCTCCTGT | 59.850 | 52.381 | 0.0 | 0.0 | 36.82 | 4.00 | R |
2686 | 2773 | 1.911357 | TGACCTGGCATCTTCTGTGAT | 59.089 | 47.619 | 0.0 | 0.0 | 0.00 | 3.06 | R |
3970 | 4505 | 4.213482 | GTGTCCACTTCAGTAATTGGTGAC | 59.787 | 45.833 | 0.0 | 0.0 | 36.89 | 3.67 | R |
4123 | 4673 | 4.400120 | AGCCCTTCCGTTACAAATTAACA | 58.600 | 39.130 | 0.0 | 0.0 | 0.00 | 2.41 | R |
4246 | 4965 | 4.808364 | GCTCTCCTTGACACTGAATCATAC | 59.192 | 45.833 | 0.0 | 0.0 | 0.00 | 2.39 | R |
4728 | 5449 | 0.741221 | CTCCGCAACCTACCTCAAGC | 60.741 | 60.000 | 0.0 | 0.0 | 0.00 | 4.01 | R |
5005 | 5726 | 0.935898 | GCTCCTCGATGCACTTGATG | 59.064 | 55.000 | 0.0 | 0.0 | 0.00 | 3.07 | R |
5724 | 6447 | 0.032540 | ACGTGGTTCGGTTACCTGAC | 59.967 | 55.000 | 0.0 | 0.0 | 44.69 | 3.51 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
105 | 106 | 4.845580 | CAATCTGCTCCGCCCGCT | 62.846 | 66.667 | 0.00 | 0.00 | 0.00 | 5.52 |
248 | 249 | 1.746516 | GCAGAGGGCAAGGAAGATGAG | 60.747 | 57.143 | 0.00 | 0.00 | 43.97 | 2.90 |
324 | 336 | 3.441290 | CCGACGAGGAGGAGCGTT | 61.441 | 66.667 | 0.00 | 0.00 | 45.00 | 4.84 |
367 | 379 | 1.825474 | CTCACTTACCACGGTGGAGAT | 59.175 | 52.381 | 32.72 | 13.82 | 40.96 | 2.75 |
410 | 422 | 2.028043 | AACGCCAAGCAGCTTTGC | 59.972 | 55.556 | 19.17 | 19.17 | 0.00 | 3.68 |
414 | 426 | 2.567497 | GCCAAGCAGCTTTGCCTCA | 61.567 | 57.895 | 18.53 | 0.00 | 34.90 | 3.86 |
526 | 552 | 2.614057 | GCGCTTACAAGGCTACATCATT | 59.386 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
555 | 596 | 3.425713 | CGGGTCCGACTTCGACGA | 61.426 | 66.667 | 2.83 | 0.00 | 43.02 | 4.20 |
576 | 617 | 4.988716 | TGACGTCGCCCCACCTCT | 62.989 | 66.667 | 11.62 | 0.00 | 0.00 | 3.69 |
626 | 677 | 2.248835 | CGAAAGGGCAAACGGTCGT | 61.249 | 57.895 | 0.00 | 0.00 | 0.00 | 4.34 |
658 | 709 | 1.625818 | TGAAGCTCACCCTCTCCTTTC | 59.374 | 52.381 | 0.00 | 0.00 | 0.00 | 2.62 |
706 | 758 | 3.254060 | AGAATGTGTCGGATCGTTGAAG | 58.746 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
752 | 816 | 7.029563 | GGTGATCTTTTGGTGATGTTTATGTC | 58.970 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
790 | 855 | 7.663827 | TGATATCGGTTTATATGTCCGTTTCT | 58.336 | 34.615 | 12.34 | 3.21 | 43.94 | 2.52 |
793 | 859 | 4.330620 | TCGGTTTATATGTCCGTTTCTTGC | 59.669 | 41.667 | 12.34 | 0.00 | 43.94 | 4.01 |
879 | 957 | 5.934043 | CGGATATGAGAATGCCAGTATGAAA | 59.066 | 40.000 | 0.00 | 0.00 | 39.69 | 2.69 |
915 | 993 | 1.083806 | TGTCTGATCAATGTCCGCGC | 61.084 | 55.000 | 0.00 | 0.00 | 0.00 | 6.86 |
916 | 994 | 1.521457 | TCTGATCAATGTCCGCGCC | 60.521 | 57.895 | 0.00 | 0.00 | 0.00 | 6.53 |
934 | 1013 | 3.691342 | CCGCGGTTGTCTGAGGGA | 61.691 | 66.667 | 19.50 | 0.00 | 36.47 | 4.20 |
942 | 1021 | 2.698797 | GGTTGTCTGAGGGATCGGATTA | 59.301 | 50.000 | 0.00 | 0.00 | 0.00 | 1.75 |
944 | 1023 | 2.598565 | TGTCTGAGGGATCGGATTAGG | 58.401 | 52.381 | 0.00 | 0.00 | 0.00 | 2.69 |
945 | 1024 | 1.896465 | GTCTGAGGGATCGGATTAGGG | 59.104 | 57.143 | 0.00 | 0.00 | 0.00 | 3.53 |
956 | 1035 | 2.616634 | GGATTAGGGAAGTCCGGTTC | 57.383 | 55.000 | 0.00 | 0.00 | 41.52 | 3.62 |
974 | 1053 | 5.923684 | CCGGTTCTAGATGCTCTTAATCTTC | 59.076 | 44.000 | 0.00 | 0.00 | 35.92 | 2.87 |
975 | 1054 | 5.627367 | CGGTTCTAGATGCTCTTAATCTTCG | 59.373 | 44.000 | 0.00 | 0.00 | 35.92 | 3.79 |
976 | 1055 | 5.404066 | GGTTCTAGATGCTCTTAATCTTCGC | 59.596 | 44.000 | 0.00 | 0.00 | 35.92 | 4.70 |
977 | 1056 | 5.127693 | TCTAGATGCTCTTAATCTTCGCC | 57.872 | 43.478 | 0.00 | 0.00 | 35.92 | 5.54 |
978 | 1057 | 3.827008 | AGATGCTCTTAATCTTCGCCA | 57.173 | 42.857 | 0.00 | 0.00 | 29.94 | 5.69 |
979 | 1058 | 3.726607 | AGATGCTCTTAATCTTCGCCAG | 58.273 | 45.455 | 0.00 | 0.00 | 29.94 | 4.85 |
980 | 1059 | 3.133721 | AGATGCTCTTAATCTTCGCCAGT | 59.866 | 43.478 | 0.00 | 0.00 | 29.94 | 4.00 |
981 | 1060 | 3.334583 | TGCTCTTAATCTTCGCCAGTT | 57.665 | 42.857 | 0.00 | 0.00 | 0.00 | 3.16 |
982 | 1061 | 3.262420 | TGCTCTTAATCTTCGCCAGTTC | 58.738 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
983 | 1062 | 3.262420 | GCTCTTAATCTTCGCCAGTTCA | 58.738 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
984 | 1063 | 3.062774 | GCTCTTAATCTTCGCCAGTTCAC | 59.937 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
985 | 1064 | 4.245660 | CTCTTAATCTTCGCCAGTTCACA | 58.754 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
986 | 1065 | 3.994392 | TCTTAATCTTCGCCAGTTCACAC | 59.006 | 43.478 | 0.00 | 0.00 | 0.00 | 3.82 |
987 | 1066 | 2.550830 | AATCTTCGCCAGTTCACACT | 57.449 | 45.000 | 0.00 | 0.00 | 0.00 | 3.55 |
988 | 1067 | 3.678056 | AATCTTCGCCAGTTCACACTA | 57.322 | 42.857 | 0.00 | 0.00 | 0.00 | 2.74 |
989 | 1068 | 2.433868 | TCTTCGCCAGTTCACACTAC | 57.566 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 |
990 | 1069 | 1.961394 | TCTTCGCCAGTTCACACTACT | 59.039 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
991 | 1070 | 2.061773 | CTTCGCCAGTTCACACTACTG | 58.938 | 52.381 | 0.00 | 0.00 | 42.06 | 2.74 |
992 | 1071 | 0.319555 | TCGCCAGTTCACACTACTGC | 60.320 | 55.000 | 0.00 | 0.00 | 41.28 | 4.40 |
993 | 1072 | 0.599991 | CGCCAGTTCACACTACTGCA | 60.600 | 55.000 | 0.00 | 0.00 | 41.28 | 4.41 |
994 | 1073 | 1.151668 | GCCAGTTCACACTACTGCAG | 58.848 | 55.000 | 13.48 | 13.48 | 41.28 | 4.41 |
995 | 1074 | 1.541233 | GCCAGTTCACACTACTGCAGT | 60.541 | 52.381 | 25.12 | 25.12 | 41.28 | 4.40 |
996 | 1075 | 2.408050 | CCAGTTCACACTACTGCAGTC | 58.592 | 52.381 | 25.56 | 6.19 | 41.28 | 3.51 |
997 | 1076 | 2.224042 | CCAGTTCACACTACTGCAGTCA | 60.224 | 50.000 | 25.56 | 9.17 | 41.28 | 3.41 |
998 | 1077 | 3.555795 | CCAGTTCACACTACTGCAGTCAT | 60.556 | 47.826 | 25.56 | 10.08 | 41.28 | 3.06 |
1005 | 1084 | 1.821753 | ACTACTGCAGTCATTCGCTCT | 59.178 | 47.619 | 25.56 | 0.00 | 28.33 | 4.09 |
1008 | 1087 | 1.207390 | CTGCAGTCATTCGCTCTAGC | 58.793 | 55.000 | 5.25 | 0.00 | 37.78 | 3.42 |
1105 | 1184 | 0.470833 | CTCGTCTCCATCCCCATCCT | 60.471 | 60.000 | 0.00 | 0.00 | 0.00 | 3.24 |
1108 | 1187 | 1.152247 | TCTCCATCCCCATCCTCCG | 60.152 | 63.158 | 0.00 | 0.00 | 0.00 | 4.63 |
1189 | 1270 | 2.210144 | CTTCCCCAATCCGCCTTCCA | 62.210 | 60.000 | 0.00 | 0.00 | 0.00 | 3.53 |
1190 | 1271 | 2.440247 | CCCCAATCCGCCTTCCAC | 60.440 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
1295 | 1376 | 0.389948 | CCTCGGCGAAAGTAAGTGCT | 60.390 | 55.000 | 12.13 | 0.00 | 0.00 | 4.40 |
1396 | 1477 | 3.542648 | GGTAGGTAGCCCTTGATTGTTC | 58.457 | 50.000 | 0.00 | 0.00 | 42.66 | 3.18 |
1502 | 1584 | 3.498774 | AGAAGCCGAATTGATGCCTAT | 57.501 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
1508 | 1590 | 5.072741 | AGCCGAATTGATGCCTATTTATGT | 58.927 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
1516 | 1598 | 5.350633 | TGATGCCTATTTATGTTTTGCTGC | 58.649 | 37.500 | 0.00 | 0.00 | 0.00 | 5.25 |
1530 | 1612 | 1.407936 | TGCTGCCCTTGCTAACAAAA | 58.592 | 45.000 | 0.00 | 0.00 | 38.71 | 2.44 |
1534 | 1616 | 3.803368 | GCTGCCCTTGCTAACAAAATTGT | 60.803 | 43.478 | 0.00 | 0.00 | 40.02 | 2.71 |
1539 | 1621 | 5.737635 | GCCCTTGCTAACAAAATTGTGTGTA | 60.738 | 40.000 | 0.93 | 0.00 | 36.56 | 2.90 |
1587 | 1669 | 5.347012 | ACATGTGCAATTTAAGCTTTTGC | 57.653 | 34.783 | 21.95 | 21.95 | 44.59 | 3.68 |
1606 | 1688 | 0.305922 | CCATTCCGCTGCTTCGATTC | 59.694 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1637 | 1724 | 7.698130 | GCTGTTTGGATATGTTAACTGATTGTC | 59.302 | 37.037 | 7.22 | 0.00 | 0.00 | 3.18 |
1644 | 1731 | 8.184192 | GGATATGTTAACTGATTGTCTTGTTGG | 58.816 | 37.037 | 7.22 | 0.00 | 0.00 | 3.77 |
1646 | 1733 | 4.037446 | TGTTAACTGATTGTCTTGTTGGCC | 59.963 | 41.667 | 7.22 | 0.00 | 0.00 | 5.36 |
1647 | 1734 | 1.620822 | ACTGATTGTCTTGTTGGCCC | 58.379 | 50.000 | 0.00 | 0.00 | 0.00 | 5.80 |
1648 | 1735 | 1.145738 | ACTGATTGTCTTGTTGGCCCT | 59.854 | 47.619 | 0.00 | 0.00 | 0.00 | 5.19 |
1664 | 1751 | 1.804372 | GCCCTTATGCAGAGTCTGTCG | 60.804 | 57.143 | 21.06 | 5.81 | 33.43 | 4.35 |
1825 | 1912 | 2.743928 | CGTGGCCTTGAGCAGTCC | 60.744 | 66.667 | 3.32 | 0.00 | 46.50 | 3.85 |
1978 | 2065 | 1.664659 | CAGGAGAAAAGAGATGCTGCG | 59.335 | 52.381 | 0.00 | 0.00 | 0.00 | 5.18 |
2011 | 2098 | 1.531259 | TGGCAAGTCCAAGCTGTCA | 59.469 | 52.632 | 0.00 | 0.00 | 43.21 | 3.58 |
2099 | 2186 | 1.168714 | GAAGTGGCCGAAGCATTCTT | 58.831 | 50.000 | 0.00 | 0.00 | 44.75 | 2.52 |
2101 | 2188 | 0.326264 | AGTGGCCGAAGCATTCTTCT | 59.674 | 50.000 | 0.00 | 0.00 | 44.75 | 2.85 |
2116 | 2203 | 3.401033 | TCTTCTGAAGGAAATGCACGA | 57.599 | 42.857 | 16.83 | 0.00 | 33.07 | 4.35 |
2163 | 2250 | 0.868406 | CCTCGTTCTGAACTTGCCAC | 59.132 | 55.000 | 17.60 | 0.00 | 0.00 | 5.01 |
2230 | 2317 | 5.487433 | TCAGACAACAGAAAGAACTTGACA | 58.513 | 37.500 | 0.00 | 0.00 | 0.00 | 3.58 |
2287 | 2374 | 1.949525 | GCATCGCAACCATATGTCCTT | 59.050 | 47.619 | 1.24 | 0.00 | 0.00 | 3.36 |
2323 | 2410 | 4.541705 | TGGAGGACTTCTATTCTGGAGAG | 58.458 | 47.826 | 0.00 | 0.00 | 0.00 | 3.20 |
2491 | 2578 | 1.132262 | GATCGGGCGAAAAAGATTGCA | 59.868 | 47.619 | 0.00 | 0.00 | 0.00 | 4.08 |
2686 | 2773 | 0.179015 | TTTGCCGACTGCTTGGGTTA | 60.179 | 50.000 | 0.00 | 0.00 | 42.00 | 2.85 |
2710 | 2797 | 1.002888 | CAGAAGATGCCAGGTCAGTGT | 59.997 | 52.381 | 0.00 | 0.00 | 0.00 | 3.55 |
2712 | 2799 | 2.499289 | AGAAGATGCCAGGTCAGTGTAG | 59.501 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2727 | 2814 | 7.039011 | AGGTCAGTGTAGTGATGAACTAATCAA | 60.039 | 37.037 | 0.00 | 0.00 | 43.08 | 2.57 |
2869 | 2956 | 4.644685 | GTGGGTAACATATTTGCTGGTCAT | 59.355 | 41.667 | 0.00 | 0.00 | 39.74 | 3.06 |
2875 | 2962 | 5.824904 | ACATATTTGCTGGTCATTGAGTC | 57.175 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
2942 | 3029 | 3.579151 | ACTACCACCTCCAGAAGTTCTTC | 59.421 | 47.826 | 1.56 | 4.58 | 0.00 | 2.87 |
2945 | 3032 | 2.307098 | CCACCTCCAGAAGTTCTTCCAT | 59.693 | 50.000 | 1.56 | 0.00 | 0.00 | 3.41 |
3043 | 3157 | 6.296145 | CCTCCTTTGGTTCATAGGATAGGATC | 60.296 | 46.154 | 7.38 | 0.00 | 39.94 | 3.36 |
3071 | 3188 | 8.581253 | AGGAATAGAAAACTTGTAGGAAATGG | 57.419 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
3309 | 3434 | 3.855689 | ATGAAATTCCGCCAAACTGAG | 57.144 | 42.857 | 0.00 | 0.00 | 0.00 | 3.35 |
3414 | 3544 | 1.350684 | TCCATTGTTGTCTAGCCAGCA | 59.649 | 47.619 | 0.00 | 0.00 | 0.00 | 4.41 |
3419 | 3549 | 3.981071 | TGTTGTCTAGCCAGCAGTTAT | 57.019 | 42.857 | 0.00 | 0.00 | 0.00 | 1.89 |
3517 | 3647 | 2.744741 | TGGTTGTGGTGTATATGTTGCG | 59.255 | 45.455 | 0.00 | 0.00 | 0.00 | 4.85 |
3647 | 4182 | 7.934457 | TCTTATGCTATTTGCCTTTTCTCATC | 58.066 | 34.615 | 0.00 | 0.00 | 42.00 | 2.92 |
3658 | 4193 | 6.367161 | TGCCTTTTCTCATCCATGATGATTA | 58.633 | 36.000 | 7.19 | 0.00 | 46.16 | 1.75 |
3796 | 4331 | 3.133901 | TCACTGAACAGTTTGAGCCAGTA | 59.866 | 43.478 | 4.63 | 0.00 | 40.20 | 2.74 |
3958 | 4493 | 7.663905 | TGCAAGAATACAATAAACTGTACCTGT | 59.336 | 33.333 | 0.00 | 0.00 | 34.68 | 4.00 |
3970 | 4505 | 3.323979 | ACTGTACCTGTACTTCCACCAAG | 59.676 | 47.826 | 8.75 | 0.00 | 37.00 | 3.61 |
4007 | 4557 | 3.443681 | AGTGGACACCAGTTGTTTCTTTG | 59.556 | 43.478 | 0.00 | 0.00 | 39.17 | 2.77 |
4008 | 4558 | 3.192633 | GTGGACACCAGTTGTTTCTTTGT | 59.807 | 43.478 | 0.00 | 0.00 | 39.17 | 2.83 |
4009 | 4559 | 3.192422 | TGGACACCAGTTGTTTCTTTGTG | 59.808 | 43.478 | 0.00 | 0.00 | 39.17 | 3.33 |
4010 | 4560 | 3.192633 | GGACACCAGTTGTTTCTTTGTGT | 59.807 | 43.478 | 0.00 | 0.00 | 39.17 | 3.72 |
4011 | 4561 | 4.321675 | GGACACCAGTTGTTTCTTTGTGTT | 60.322 | 41.667 | 0.00 | 0.00 | 39.17 | 3.32 |
4012 | 4562 | 5.106078 | GGACACCAGTTGTTTCTTTGTGTTA | 60.106 | 40.000 | 0.00 | 0.00 | 39.17 | 2.41 |
4013 | 4563 | 5.705902 | ACACCAGTTGTTTCTTTGTGTTAC | 58.294 | 37.500 | 0.00 | 0.00 | 33.09 | 2.50 |
4014 | 4564 | 5.099575 | CACCAGTTGTTTCTTTGTGTTACC | 58.900 | 41.667 | 0.00 | 0.00 | 0.00 | 2.85 |
4015 | 4565 | 5.014202 | ACCAGTTGTTTCTTTGTGTTACCT | 58.986 | 37.500 | 0.00 | 0.00 | 0.00 | 3.08 |
4016 | 4566 | 5.479027 | ACCAGTTGTTTCTTTGTGTTACCTT | 59.521 | 36.000 | 0.00 | 0.00 | 0.00 | 3.50 |
4017 | 4567 | 6.033966 | CCAGTTGTTTCTTTGTGTTACCTTC | 58.966 | 40.000 | 0.00 | 0.00 | 0.00 | 3.46 |
4018 | 4568 | 6.033966 | CAGTTGTTTCTTTGTGTTACCTTCC | 58.966 | 40.000 | 0.00 | 0.00 | 0.00 | 3.46 |
4019 | 4569 | 5.949952 | AGTTGTTTCTTTGTGTTACCTTCCT | 59.050 | 36.000 | 0.00 | 0.00 | 0.00 | 3.36 |
4020 | 4570 | 6.436218 | AGTTGTTTCTTTGTGTTACCTTCCTT | 59.564 | 34.615 | 0.00 | 0.00 | 0.00 | 3.36 |
4021 | 4571 | 6.844097 | TGTTTCTTTGTGTTACCTTCCTTT | 57.156 | 33.333 | 0.00 | 0.00 | 0.00 | 3.11 |
4123 | 4673 | 3.253677 | GCTATGCTACACAGATACCGTCT | 59.746 | 47.826 | 0.00 | 0.00 | 37.80 | 4.18 |
4151 | 4701 | 3.488778 | TGTAACGGAAGGGCTTTGTTA | 57.511 | 42.857 | 0.00 | 0.00 | 0.00 | 2.41 |
4152 | 4702 | 3.818180 | TGTAACGGAAGGGCTTTGTTAA | 58.182 | 40.909 | 0.00 | 0.00 | 30.84 | 2.01 |
4153 | 4703 | 4.400120 | TGTAACGGAAGGGCTTTGTTAAT | 58.600 | 39.130 | 0.00 | 0.00 | 30.84 | 1.40 |
4246 | 4965 | 7.556844 | ACTATTACCAGACATCTGTTACCTTG | 58.443 | 38.462 | 8.06 | 0.00 | 42.27 | 3.61 |
4303 | 5022 | 6.040278 | TGTTTGCATCCAGTGATTTCAAGTTA | 59.960 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
4610 | 5331 | 9.076596 | GTTTGCATCCTGTGATTTTAAGTTATC | 57.923 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
4627 | 5348 | 4.591498 | AGTTATCAGTGGTGTAGTGGTTCA | 59.409 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
4639 | 5360 | 8.356657 | TGGTGTAGTGGTTCAAAATTCAATTAG | 58.643 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
5005 | 5726 | 1.530293 | CTGTCTGCACTGAAAGCTGTC | 59.470 | 52.381 | 0.00 | 0.00 | 37.60 | 3.51 |
5047 | 5768 | 3.217626 | CAAACTGGAGGAGCAATATCCC | 58.782 | 50.000 | 0.00 | 0.00 | 40.53 | 3.85 |
5094 | 5815 | 1.849823 | AGCTGGAGAAGGCCAAGGT | 60.850 | 57.895 | 5.01 | 0.00 | 37.52 | 3.50 |
5143 | 5864 | 3.059982 | CCACAGTCGAAGAGGCCA | 58.940 | 61.111 | 5.01 | 0.00 | 36.95 | 5.36 |
5178 | 5899 | 0.179100 | CTCTATGCACCCCGTGTCAG | 60.179 | 60.000 | 0.00 | 0.00 | 35.75 | 3.51 |
5260 | 5981 | 2.604174 | GCAGTTTGTGTACGGCGCT | 61.604 | 57.895 | 6.90 | 0.00 | 30.03 | 5.92 |
5314 | 6035 | 0.747255 | CTCCCTACACCATCTCACCG | 59.253 | 60.000 | 0.00 | 0.00 | 0.00 | 4.94 |
5703 | 6426 | 7.582435 | TCATCTTTACTGTTCTTTCGTCATC | 57.418 | 36.000 | 0.00 | 0.00 | 0.00 | 2.92 |
5724 | 6447 | 0.816825 | CGGTGCTTCATCCATGGAGG | 60.817 | 60.000 | 20.49 | 20.49 | 33.86 | 4.30 |
5746 | 6537 | 2.374995 | GGTAACCGAACCACGTCGC | 61.375 | 63.158 | 0.00 | 0.00 | 39.74 | 5.19 |
5778 | 6569 | 3.077359 | CAGTTTTGGAGAGGCAGGTAAG | 58.923 | 50.000 | 0.00 | 0.00 | 0.00 | 2.34 |
5821 | 6612 | 5.527951 | TGCTGTCAATGAATTGCAATGTTTT | 59.472 | 32.000 | 13.82 | 4.02 | 37.68 | 2.43 |
5888 | 6679 | 3.786635 | ACGCCACATAAGAGAAGTGATC | 58.213 | 45.455 | 0.00 | 0.00 | 35.33 | 2.92 |
5955 | 6746 | 6.884836 | AGGGACATTACAAATAGTCTTCCAAC | 59.115 | 38.462 | 0.00 | 0.00 | 0.00 | 3.77 |
6064 | 6855 | 1.942677 | TATCGTGTGGTTTATGCGGG | 58.057 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
6104 | 6906 | 2.814097 | GCTTAAACCCTTGCTCACAGGA | 60.814 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
6190 | 7034 | 8.076178 | GTGAAATTTTTCTCGGGGATACATATG | 58.924 | 37.037 | 0.00 | 0.00 | 38.02 | 1.78 |
6206 | 7050 | 4.973168 | ACATATGCACATTCCGAATACCT | 58.027 | 39.130 | 1.58 | 0.00 | 0.00 | 3.08 |
6209 | 7053 | 3.066291 | TGCACATTCCGAATACCTGTT | 57.934 | 42.857 | 0.00 | 0.00 | 0.00 | 3.16 |
6218 | 7062 | 6.790285 | TTCCGAATACCTGTTGTAAGTTTC | 57.210 | 37.500 | 0.00 | 0.00 | 31.94 | 2.78 |
6231 | 7075 | 6.364165 | TGTTGTAAGTTTCGGTAGAAATCTCG | 59.636 | 38.462 | 0.00 | 0.00 | 46.64 | 4.04 |
6233 | 7077 | 6.449698 | TGTAAGTTTCGGTAGAAATCTCGTT | 58.550 | 36.000 | 0.00 | 0.00 | 46.64 | 3.85 |
6234 | 7078 | 6.925165 | TGTAAGTTTCGGTAGAAATCTCGTTT | 59.075 | 34.615 | 0.00 | 0.00 | 46.64 | 3.60 |
6235 | 7079 | 6.463483 | AAGTTTCGGTAGAAATCTCGTTTC | 57.537 | 37.500 | 0.00 | 0.00 | 46.64 | 2.78 |
6236 | 7080 | 4.928020 | AGTTTCGGTAGAAATCTCGTTTCC | 59.072 | 41.667 | 0.00 | 0.00 | 46.64 | 3.13 |
6237 | 7081 | 4.796038 | TTCGGTAGAAATCTCGTTTCCT | 57.204 | 40.909 | 0.00 | 0.00 | 45.96 | 3.36 |
6238 | 7082 | 4.796038 | TCGGTAGAAATCTCGTTTCCTT | 57.204 | 40.909 | 0.00 | 0.00 | 45.96 | 3.36 |
6239 | 7083 | 5.902613 | TCGGTAGAAATCTCGTTTCCTTA | 57.097 | 39.130 | 0.00 | 0.00 | 45.96 | 2.69 |
6240 | 7084 | 5.888105 | TCGGTAGAAATCTCGTTTCCTTAG | 58.112 | 41.667 | 0.00 | 0.00 | 45.96 | 2.18 |
6241 | 7085 | 5.649395 | TCGGTAGAAATCTCGTTTCCTTAGA | 59.351 | 40.000 | 0.00 | 0.00 | 45.96 | 2.10 |
6242 | 7086 | 6.320672 | TCGGTAGAAATCTCGTTTCCTTAGAT | 59.679 | 38.462 | 0.00 | 0.00 | 45.96 | 1.98 |
6243 | 7087 | 6.979238 | CGGTAGAAATCTCGTTTCCTTAGATT | 59.021 | 38.462 | 0.00 | 0.00 | 45.96 | 2.40 |
6245 | 7089 | 9.813446 | GGTAGAAATCTCGTTTCCTTAGATTTA | 57.187 | 33.333 | 8.96 | 0.00 | 45.39 | 1.40 |
6254 | 7098 | 9.615295 | CTCGTTTCCTTAGATTTATACTAGAGC | 57.385 | 37.037 | 0.00 | 0.00 | 0.00 | 4.09 |
6255 | 7099 | 8.574737 | TCGTTTCCTTAGATTTATACTAGAGCC | 58.425 | 37.037 | 0.00 | 0.00 | 0.00 | 4.70 |
6256 | 7100 | 8.358148 | CGTTTCCTTAGATTTATACTAGAGCCA | 58.642 | 37.037 | 0.00 | 0.00 | 0.00 | 4.75 |
6257 | 7101 | 9.478768 | GTTTCCTTAGATTTATACTAGAGCCAC | 57.521 | 37.037 | 0.00 | 0.00 | 0.00 | 5.01 |
6258 | 7102 | 7.450124 | TCCTTAGATTTATACTAGAGCCACG | 57.550 | 40.000 | 0.00 | 0.00 | 0.00 | 4.94 |
6259 | 7103 | 7.229308 | TCCTTAGATTTATACTAGAGCCACGA | 58.771 | 38.462 | 0.00 | 0.00 | 0.00 | 4.35 |
6260 | 7104 | 7.889073 | TCCTTAGATTTATACTAGAGCCACGAT | 59.111 | 37.037 | 0.00 | 0.00 | 0.00 | 3.73 |
6261 | 7105 | 7.971168 | CCTTAGATTTATACTAGAGCCACGATG | 59.029 | 40.741 | 0.00 | 0.00 | 0.00 | 3.84 |
6262 | 7106 | 8.631480 | TTAGATTTATACTAGAGCCACGATGA | 57.369 | 34.615 | 0.00 | 0.00 | 0.00 | 2.92 |
6263 | 7107 | 7.710676 | AGATTTATACTAGAGCCACGATGAT | 57.289 | 36.000 | 0.00 | 0.00 | 0.00 | 2.45 |
6264 | 7108 | 8.128322 | AGATTTATACTAGAGCCACGATGATT | 57.872 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
6265 | 7109 | 8.589338 | AGATTTATACTAGAGCCACGATGATTT | 58.411 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
6266 | 7110 | 9.856488 | GATTTATACTAGAGCCACGATGATTTA | 57.144 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
6267 | 7111 | 9.862371 | ATTTATACTAGAGCCACGATGATTTAG | 57.138 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
6268 | 7112 | 6.902771 | ATACTAGAGCCACGATGATTTAGT | 57.097 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
6269 | 7113 | 5.189659 | ACTAGAGCCACGATGATTTAGTC | 57.810 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
6270 | 7114 | 4.890581 | ACTAGAGCCACGATGATTTAGTCT | 59.109 | 41.667 | 0.00 | 0.00 | 0.00 | 3.24 |
6271 | 7115 | 4.314740 | AGAGCCACGATGATTTAGTCTC | 57.685 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
6272 | 7116 | 3.701542 | AGAGCCACGATGATTTAGTCTCA | 59.298 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
6273 | 7117 | 4.160439 | AGAGCCACGATGATTTAGTCTCAA | 59.840 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
6274 | 7118 | 4.437239 | AGCCACGATGATTTAGTCTCAAG | 58.563 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
6275 | 7119 | 3.001736 | GCCACGATGATTTAGTCTCAAGC | 59.998 | 47.826 | 0.00 | 0.00 | 0.00 | 4.01 |
6276 | 7120 | 4.437239 | CCACGATGATTTAGTCTCAAGCT | 58.563 | 43.478 | 0.00 | 0.00 | 0.00 | 3.74 |
6277 | 7121 | 5.592054 | CCACGATGATTTAGTCTCAAGCTA | 58.408 | 41.667 | 0.00 | 0.00 | 0.00 | 3.32 |
6278 | 7122 | 6.042777 | CCACGATGATTTAGTCTCAAGCTAA | 58.957 | 40.000 | 0.00 | 0.00 | 0.00 | 3.09 |
6279 | 7123 | 6.535150 | CCACGATGATTTAGTCTCAAGCTAAA | 59.465 | 38.462 | 0.00 | 0.00 | 41.04 | 1.85 |
6280 | 7124 | 7.394872 | CACGATGATTTAGTCTCAAGCTAAAC | 58.605 | 38.462 | 0.00 | 0.00 | 40.04 | 2.01 |
6281 | 7125 | 7.063426 | CACGATGATTTAGTCTCAAGCTAAACA | 59.937 | 37.037 | 0.00 | 0.00 | 40.04 | 2.83 |
6282 | 7126 | 7.602644 | ACGATGATTTAGTCTCAAGCTAAACAA | 59.397 | 33.333 | 0.00 | 0.00 | 40.04 | 2.83 |
6283 | 7127 | 8.443160 | CGATGATTTAGTCTCAAGCTAAACAAA | 58.557 | 33.333 | 0.00 | 0.00 | 40.04 | 2.83 |
6286 | 7130 | 8.567948 | TGATTTAGTCTCAAGCTAAACAAAAGG | 58.432 | 33.333 | 0.00 | 0.00 | 40.04 | 3.11 |
6287 | 7131 | 4.837896 | AGTCTCAAGCTAAACAAAAGGC | 57.162 | 40.909 | 0.00 | 0.00 | 0.00 | 4.35 |
6288 | 7132 | 4.207165 | AGTCTCAAGCTAAACAAAAGGCA | 58.793 | 39.130 | 0.00 | 0.00 | 0.00 | 4.75 |
6289 | 7133 | 4.644685 | AGTCTCAAGCTAAACAAAAGGCAA | 59.355 | 37.500 | 0.00 | 0.00 | 0.00 | 4.52 |
6290 | 7134 | 4.978580 | GTCTCAAGCTAAACAAAAGGCAAG | 59.021 | 41.667 | 0.00 | 0.00 | 0.00 | 4.01 |
6291 | 7135 | 4.037923 | TCTCAAGCTAAACAAAAGGCAAGG | 59.962 | 41.667 | 0.00 | 0.00 | 0.00 | 3.61 |
6292 | 7136 | 3.069443 | TCAAGCTAAACAAAAGGCAAGGG | 59.931 | 43.478 | 0.00 | 0.00 | 0.00 | 3.95 |
6312 | 7156 | 5.399113 | AGGGTTTGTTTTGGGCTATAGAAA | 58.601 | 37.500 | 3.21 | 0.00 | 0.00 | 2.52 |
6429 | 7273 | 3.764237 | TCCAGCTTTTTACCGAGTCTT | 57.236 | 42.857 | 0.00 | 0.00 | 0.00 | 3.01 |
6436 | 7280 | 5.875359 | AGCTTTTTACCGAGTCTTAGGAATG | 59.125 | 40.000 | 2.71 | 0.00 | 0.00 | 2.67 |
6446 | 7290 | 5.744345 | CGAGTCTTAGGAATGTGTGTATGTC | 59.256 | 44.000 | 0.00 | 0.00 | 0.00 | 3.06 |
6500 | 7344 | 7.173047 | AGCAACAGAAGTGTGTTTTTCAAAAAT | 59.827 | 29.630 | 0.00 | 0.00 | 38.65 | 1.82 |
6504 | 7348 | 9.050601 | ACAGAAGTGTGTTTTTCAAAAATTTCA | 57.949 | 25.926 | 0.00 | 0.00 | 34.75 | 2.69 |
6534 | 7378 | 1.524621 | CAATGGAGCCCGGTAGCTG | 60.525 | 63.158 | 10.17 | 0.00 | 45.15 | 4.24 |
6535 | 7379 | 1.995626 | AATGGAGCCCGGTAGCTGT | 60.996 | 57.895 | 10.17 | 0.00 | 45.15 | 4.40 |
6546 | 7390 | 2.747446 | CCGGTAGCTGTATGCACTTTTT | 59.253 | 45.455 | 0.00 | 0.00 | 45.94 | 1.94 |
6549 | 7393 | 4.094887 | CGGTAGCTGTATGCACTTTTTGAT | 59.905 | 41.667 | 0.00 | 0.00 | 45.94 | 2.57 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
105 | 106 | 2.764128 | GGTGGAGGAGGCCATCGA | 60.764 | 66.667 | 5.01 | 0.00 | 40.68 | 3.59 |
157 | 158 | 2.047655 | CGGCGAAGTGGGCACTAA | 60.048 | 61.111 | 0.00 | 0.00 | 41.58 | 2.24 |
324 | 336 | 1.189524 | CGGTACACCCACTGGAGGAA | 61.190 | 60.000 | 0.00 | 0.00 | 34.81 | 3.36 |
367 | 379 | 2.029964 | GAAGTCGTTGGGCGTCCA | 59.970 | 61.111 | 3.51 | 3.51 | 42.25 | 4.02 |
376 | 388 | 2.927014 | GCGTTGATCCTCTGAAGTCGTT | 60.927 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
383 | 395 | 0.391661 | GCTTGGCGTTGATCCTCTGA | 60.392 | 55.000 | 0.00 | 0.00 | 0.00 | 3.27 |
414 | 426 | 1.303799 | CGCTCAGGTTGCTCAATGCT | 61.304 | 55.000 | 0.00 | 0.00 | 43.37 | 3.79 |
426 | 438 | 2.515523 | CATTGCCTCCCGCTCAGG | 60.516 | 66.667 | 0.00 | 0.00 | 38.78 | 3.86 |
441 | 453 | 4.457496 | CCTCCACCGCTGTCGCAT | 62.457 | 66.667 | 0.00 | 0.00 | 35.30 | 4.73 |
511 | 537 | 3.525199 | AGGAGGAAATGATGTAGCCTTGT | 59.475 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
526 | 552 | 1.305046 | GGACCCGTCAGAGGAGGAA | 60.305 | 63.158 | 0.00 | 0.00 | 0.00 | 3.36 |
555 | 596 | 3.681835 | GTGGGGCGACGTCAGAGT | 61.682 | 66.667 | 17.16 | 0.00 | 0.00 | 3.24 |
576 | 617 | 3.523087 | TTGTAGGCGTCCGCAGCAA | 62.523 | 57.895 | 14.19 | 11.41 | 44.11 | 3.91 |
620 | 671 | 2.178521 | CCACTTCCTCGACGACCG | 59.821 | 66.667 | 0.00 | 0.00 | 40.25 | 4.79 |
626 | 677 | 0.603569 | GAGCTTCACCACTTCCTCGA | 59.396 | 55.000 | 0.00 | 0.00 | 0.00 | 4.04 |
706 | 758 | 1.519408 | AACGGGCATAGTTCACACAC | 58.481 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
752 | 816 | 5.947228 | ACCGATATCAAACAGGCATAATG | 57.053 | 39.130 | 3.12 | 0.00 | 0.00 | 1.90 |
830 | 905 | 6.273825 | CACCCTATATCCATACTATTCACGC | 58.726 | 44.000 | 0.00 | 0.00 | 0.00 | 5.34 |
831 | 906 | 6.273825 | GCACCCTATATCCATACTATTCACG | 58.726 | 44.000 | 0.00 | 0.00 | 0.00 | 4.35 |
832 | 907 | 6.273825 | CGCACCCTATATCCATACTATTCAC | 58.726 | 44.000 | 0.00 | 0.00 | 0.00 | 3.18 |
834 | 909 | 5.597182 | TCCGCACCCTATATCCATACTATTC | 59.403 | 44.000 | 0.00 | 0.00 | 0.00 | 1.75 |
835 | 910 | 5.525484 | TCCGCACCCTATATCCATACTATT | 58.475 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
836 | 911 | 5.138758 | TCCGCACCCTATATCCATACTAT | 57.861 | 43.478 | 0.00 | 0.00 | 0.00 | 2.12 |
837 | 912 | 4.596354 | TCCGCACCCTATATCCATACTA | 57.404 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
838 | 913 | 3.468071 | TCCGCACCCTATATCCATACT | 57.532 | 47.619 | 0.00 | 0.00 | 0.00 | 2.12 |
879 | 957 | 0.249398 | ACACTTCCTAAATCCGCGCT | 59.751 | 50.000 | 5.56 | 0.00 | 0.00 | 5.92 |
915 | 993 | 4.760047 | CCTCAGACAACCGCGGGG | 62.760 | 72.222 | 31.76 | 23.38 | 40.11 | 5.73 |
916 | 994 | 4.760047 | CCCTCAGACAACCGCGGG | 62.760 | 72.222 | 31.76 | 15.62 | 0.00 | 6.13 |
919 | 997 | 1.519455 | CGATCCCTCAGACAACCGC | 60.519 | 63.158 | 0.00 | 0.00 | 0.00 | 5.68 |
920 | 998 | 1.141881 | CCGATCCCTCAGACAACCG | 59.858 | 63.158 | 0.00 | 0.00 | 0.00 | 4.44 |
921 | 999 | 1.123928 | ATCCGATCCCTCAGACAACC | 58.876 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
922 | 1000 | 2.990066 | AATCCGATCCCTCAGACAAC | 57.010 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
923 | 1001 | 2.965831 | CCTAATCCGATCCCTCAGACAA | 59.034 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
925 | 1003 | 1.896465 | CCCTAATCCGATCCCTCAGAC | 59.104 | 57.143 | 0.00 | 0.00 | 0.00 | 3.51 |
926 | 1004 | 1.787058 | TCCCTAATCCGATCCCTCAGA | 59.213 | 52.381 | 0.00 | 0.00 | 0.00 | 3.27 |
927 | 1005 | 2.310779 | TCCCTAATCCGATCCCTCAG | 57.689 | 55.000 | 0.00 | 0.00 | 0.00 | 3.35 |
929 | 1007 | 2.563620 | GACTTCCCTAATCCGATCCCTC | 59.436 | 54.545 | 0.00 | 0.00 | 0.00 | 4.30 |
930 | 1008 | 2.610873 | GACTTCCCTAATCCGATCCCT | 58.389 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
931 | 1009 | 1.624312 | GGACTTCCCTAATCCGATCCC | 59.376 | 57.143 | 0.00 | 0.00 | 0.00 | 3.85 |
942 | 1021 | 2.389715 | CATCTAGAACCGGACTTCCCT | 58.610 | 52.381 | 9.46 | 0.00 | 0.00 | 4.20 |
944 | 1023 | 1.757699 | AGCATCTAGAACCGGACTTCC | 59.242 | 52.381 | 9.46 | 0.00 | 0.00 | 3.46 |
945 | 1024 | 3.086818 | GAGCATCTAGAACCGGACTTC | 57.913 | 52.381 | 9.46 | 1.62 | 0.00 | 3.01 |
974 | 1053 | 0.599991 | TGCAGTAGTGTGAACTGGCG | 60.600 | 55.000 | 5.47 | 0.00 | 43.71 | 5.69 |
975 | 1054 | 1.151668 | CTGCAGTAGTGTGAACTGGC | 58.848 | 55.000 | 5.25 | 0.00 | 43.71 | 4.85 |
976 | 1055 | 2.224042 | TGACTGCAGTAGTGTGAACTGG | 60.224 | 50.000 | 21.73 | 0.00 | 43.71 | 4.00 |
977 | 1056 | 3.097877 | TGACTGCAGTAGTGTGAACTG | 57.902 | 47.619 | 21.73 | 0.00 | 45.80 | 3.16 |
978 | 1057 | 4.310769 | GAATGACTGCAGTAGTGTGAACT | 58.689 | 43.478 | 21.73 | 0.00 | 40.53 | 3.01 |
979 | 1058 | 3.121944 | CGAATGACTGCAGTAGTGTGAAC | 59.878 | 47.826 | 21.73 | 5.06 | 40.53 | 3.18 |
980 | 1059 | 3.317150 | CGAATGACTGCAGTAGTGTGAA | 58.683 | 45.455 | 21.73 | 0.00 | 40.53 | 3.18 |
981 | 1060 | 2.926586 | GCGAATGACTGCAGTAGTGTGA | 60.927 | 50.000 | 21.73 | 0.00 | 40.53 | 3.58 |
982 | 1061 | 1.391485 | GCGAATGACTGCAGTAGTGTG | 59.609 | 52.381 | 21.73 | 11.25 | 40.53 | 3.82 |
983 | 1062 | 1.273606 | AGCGAATGACTGCAGTAGTGT | 59.726 | 47.619 | 21.73 | 5.35 | 40.53 | 3.55 |
984 | 1063 | 1.923204 | GAGCGAATGACTGCAGTAGTG | 59.077 | 52.381 | 21.73 | 9.39 | 40.53 | 2.74 |
985 | 1064 | 1.821753 | AGAGCGAATGACTGCAGTAGT | 59.178 | 47.619 | 21.73 | 8.63 | 44.02 | 2.73 |
986 | 1065 | 2.575694 | AGAGCGAATGACTGCAGTAG | 57.424 | 50.000 | 21.73 | 10.10 | 0.00 | 2.57 |
987 | 1066 | 2.223595 | GCTAGAGCGAATGACTGCAGTA | 60.224 | 50.000 | 21.73 | 8.91 | 0.00 | 2.74 |
988 | 1067 | 1.470632 | GCTAGAGCGAATGACTGCAGT | 60.471 | 52.381 | 21.88 | 21.88 | 0.00 | 4.40 |
989 | 1068 | 1.207390 | GCTAGAGCGAATGACTGCAG | 58.793 | 55.000 | 13.48 | 13.48 | 0.00 | 4.41 |
990 | 1069 | 0.179100 | GGCTAGAGCGAATGACTGCA | 60.179 | 55.000 | 0.00 | 0.00 | 43.26 | 4.41 |
991 | 1070 | 0.179100 | TGGCTAGAGCGAATGACTGC | 60.179 | 55.000 | 0.00 | 0.00 | 43.26 | 4.40 |
992 | 1071 | 1.135915 | AGTGGCTAGAGCGAATGACTG | 59.864 | 52.381 | 0.00 | 0.00 | 43.26 | 3.51 |
993 | 1072 | 1.479709 | AGTGGCTAGAGCGAATGACT | 58.520 | 50.000 | 0.00 | 0.00 | 43.26 | 3.41 |
994 | 1073 | 2.544069 | GGTAGTGGCTAGAGCGAATGAC | 60.544 | 54.545 | 0.00 | 0.00 | 43.26 | 3.06 |
995 | 1074 | 1.681793 | GGTAGTGGCTAGAGCGAATGA | 59.318 | 52.381 | 0.00 | 0.00 | 43.26 | 2.57 |
996 | 1075 | 1.409064 | TGGTAGTGGCTAGAGCGAATG | 59.591 | 52.381 | 0.00 | 0.00 | 43.26 | 2.67 |
997 | 1076 | 1.683917 | CTGGTAGTGGCTAGAGCGAAT | 59.316 | 52.381 | 0.00 | 0.00 | 43.26 | 3.34 |
998 | 1077 | 1.103803 | CTGGTAGTGGCTAGAGCGAA | 58.896 | 55.000 | 0.00 | 0.00 | 43.26 | 4.70 |
1005 | 1084 | 0.759436 | GGCCTAGCTGGTAGTGGCTA | 60.759 | 60.000 | 14.37 | 0.00 | 42.84 | 3.93 |
1008 | 1087 | 2.444256 | GGGGCCTAGCTGGTAGTGG | 61.444 | 68.421 | 12.43 | 0.93 | 38.35 | 4.00 |
1105 | 1184 | 1.305201 | GTGGAGTGTTGCTTTTCGGA | 58.695 | 50.000 | 0.00 | 0.00 | 0.00 | 4.55 |
1108 | 1187 | 0.657368 | CGCGTGGAGTGTTGCTTTTC | 60.657 | 55.000 | 0.00 | 0.00 | 0.00 | 2.29 |
1189 | 1270 | 2.609920 | GGAGGAGATCGAGGGGGT | 59.390 | 66.667 | 0.00 | 0.00 | 0.00 | 4.95 |
1190 | 1271 | 2.203714 | GGGAGGAGATCGAGGGGG | 60.204 | 72.222 | 0.00 | 0.00 | 0.00 | 5.40 |
1295 | 1376 | 4.999310 | TGAGACTAGGGAGAAGAAAGTGA | 58.001 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
1502 | 1584 | 2.368221 | AGCAAGGGCAGCAAAACATAAA | 59.632 | 40.909 | 0.00 | 0.00 | 44.61 | 1.40 |
1508 | 1590 | 1.407936 | TGTTAGCAAGGGCAGCAAAA | 58.592 | 45.000 | 0.00 | 0.00 | 44.61 | 2.44 |
1516 | 1598 | 4.692228 | ACACACAATTTTGTTAGCAAGGG | 58.308 | 39.130 | 0.00 | 0.00 | 39.91 | 3.95 |
1572 | 1654 | 4.435917 | GCGGAATGGCAAAAGCTTAAATTG | 60.436 | 41.667 | 0.00 | 1.70 | 0.00 | 2.32 |
1587 | 1669 | 0.305922 | GAATCGAAGCAGCGGAATGG | 59.694 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1606 | 1688 | 3.829886 | AACATATCCAAACAGCACACG | 57.170 | 42.857 | 0.00 | 0.00 | 0.00 | 4.49 |
1637 | 1724 | 1.747355 | CTCTGCATAAGGGCCAACAAG | 59.253 | 52.381 | 6.18 | 0.00 | 0.00 | 3.16 |
1644 | 1731 | 1.804372 | CGACAGACTCTGCATAAGGGC | 60.804 | 57.143 | 5.92 | 0.00 | 34.37 | 5.19 |
1646 | 1733 | 1.565305 | GCGACAGACTCTGCATAAGG | 58.435 | 55.000 | 5.92 | 0.00 | 34.37 | 2.69 |
1647 | 1734 | 1.134995 | TGGCGACAGACTCTGCATAAG | 60.135 | 52.381 | 5.92 | 0.00 | 34.37 | 1.73 |
1648 | 1735 | 0.894835 | TGGCGACAGACTCTGCATAA | 59.105 | 50.000 | 5.92 | 0.00 | 34.37 | 1.90 |
1825 | 1912 | 5.919141 | CAGCTCATCAAACTTTTTCTTGAGG | 59.081 | 40.000 | 0.00 | 0.00 | 35.14 | 3.86 |
1855 | 1942 | 1.150135 | TCCTGGAACTCCTTCTCCTGT | 59.850 | 52.381 | 0.00 | 0.00 | 36.82 | 4.00 |
1978 | 2065 | 5.008118 | GGACTTGCCAAAGATCATAGCTAAC | 59.992 | 44.000 | 0.00 | 0.00 | 36.84 | 2.34 |
2099 | 2186 | 2.162208 | GCATTCGTGCATTTCCTTCAGA | 59.838 | 45.455 | 0.00 | 0.00 | 34.41 | 3.27 |
2101 | 2188 | 1.885233 | TGCATTCGTGCATTTCCTTCA | 59.115 | 42.857 | 0.00 | 0.00 | 40.23 | 3.02 |
2116 | 2203 | 1.742411 | GCAGCATTGCCATCTTGCATT | 60.742 | 47.619 | 13.17 | 0.00 | 44.74 | 3.56 |
2287 | 2374 | 2.061848 | TCCTCCAAGGAATCCAACACA | 58.938 | 47.619 | 0.61 | 0.00 | 42.51 | 3.72 |
2323 | 2410 | 2.806945 | TCCCATCCAACACCAGATTC | 57.193 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2422 | 2509 | 3.438087 | CCTCAGACAACAAGCCAGTTATG | 59.562 | 47.826 | 0.00 | 0.00 | 0.00 | 1.90 |
2549 | 2636 | 3.321396 | TGAAGAAATGCATGTGCTTCCAA | 59.679 | 39.130 | 22.94 | 10.80 | 42.66 | 3.53 |
2686 | 2773 | 1.911357 | TGACCTGGCATCTTCTGTGAT | 59.089 | 47.619 | 0.00 | 0.00 | 0.00 | 3.06 |
2710 | 2797 | 9.920133 | GATAGATGCTTGATTAGTTCATCACTA | 57.080 | 33.333 | 0.00 | 0.00 | 36.88 | 2.74 |
2712 | 2799 | 8.830201 | AGATAGATGCTTGATTAGTTCATCAC | 57.170 | 34.615 | 0.00 | 0.00 | 36.81 | 3.06 |
2727 | 2814 | 6.893583 | ACAATGTTTACTGGAGATAGATGCT | 58.106 | 36.000 | 0.00 | 0.00 | 0.00 | 3.79 |
2831 | 2918 | 2.863809 | ACCCACAAGCTGGAAAACTAG | 58.136 | 47.619 | 0.00 | 0.00 | 43.95 | 2.57 |
2849 | 2936 | 6.095440 | ACTCAATGACCAGCAAATATGTTACC | 59.905 | 38.462 | 0.00 | 0.00 | 0.00 | 2.85 |
2869 | 2956 | 3.595173 | CACATATGTTCGGTGGACTCAA | 58.405 | 45.455 | 5.37 | 0.00 | 0.00 | 3.02 |
2875 | 2962 | 2.487762 | AGTTTGCACATATGTTCGGTGG | 59.512 | 45.455 | 5.37 | 0.00 | 33.25 | 4.61 |
2942 | 3029 | 7.869429 | GCAAAACTATCAATTCTGGGAATATGG | 59.131 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
2945 | 3032 | 7.615365 | ACAGCAAAACTATCAATTCTGGGAATA | 59.385 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
3071 | 3188 | 8.316946 | TCATAGGATTTGAGATACATGTCATCC | 58.683 | 37.037 | 0.00 | 0.00 | 32.40 | 3.51 |
3476 | 3606 | 7.387948 | ACAACCACACATCAGACTAAATAGAAC | 59.612 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
3517 | 3647 | 5.520288 | CAGATGCAACATAGTGTGGTACTAC | 59.480 | 44.000 | 1.77 | 1.77 | 44.30 | 2.73 |
3690 | 4225 | 4.647564 | ATGACACCTGTCCTCAAGAAAT | 57.352 | 40.909 | 2.98 | 0.00 | 44.15 | 2.17 |
3958 | 4493 | 4.447138 | AATTGGTGACTTGGTGGAAGTA | 57.553 | 40.909 | 0.00 | 0.00 | 45.48 | 2.24 |
3970 | 4505 | 4.213482 | GTGTCCACTTCAGTAATTGGTGAC | 59.787 | 45.833 | 0.00 | 0.00 | 36.89 | 3.67 |
4015 | 4565 | 9.541143 | GAATGGTTAATCAAACTTCAAAAGGAA | 57.459 | 29.630 | 0.00 | 0.00 | 38.23 | 3.36 |
4016 | 4566 | 8.923270 | AGAATGGTTAATCAAACTTCAAAAGGA | 58.077 | 29.630 | 0.00 | 0.00 | 38.23 | 3.36 |
4017 | 4567 | 8.981647 | CAGAATGGTTAATCAAACTTCAAAAGG | 58.018 | 33.333 | 0.00 | 0.00 | 38.23 | 3.11 |
4018 | 4568 | 8.490355 | GCAGAATGGTTAATCAAACTTCAAAAG | 58.510 | 33.333 | 0.00 | 0.00 | 38.23 | 2.27 |
4019 | 4569 | 8.364129 | GCAGAATGGTTAATCAAACTTCAAAA | 57.636 | 30.769 | 0.00 | 0.00 | 38.23 | 2.44 |
4020 | 4570 | 7.945033 | GCAGAATGGTTAATCAAACTTCAAA | 57.055 | 32.000 | 0.00 | 0.00 | 38.23 | 2.69 |
4123 | 4673 | 4.400120 | AGCCCTTCCGTTACAAATTAACA | 58.600 | 39.130 | 0.00 | 0.00 | 0.00 | 2.41 |
4246 | 4965 | 4.808364 | GCTCTCCTTGACACTGAATCATAC | 59.192 | 45.833 | 0.00 | 0.00 | 0.00 | 2.39 |
4303 | 5022 | 8.691661 | AGAATTTTGAACACTACACCACTAAT | 57.308 | 30.769 | 0.00 | 0.00 | 0.00 | 1.73 |
4350 | 5071 | 9.160496 | CAAATCCAATACTGATCTATCTAAGGC | 57.840 | 37.037 | 0.00 | 0.00 | 0.00 | 4.35 |
4610 | 5331 | 5.067153 | TGAATTTTGAACCACTACACCACTG | 59.933 | 40.000 | 0.00 | 0.00 | 0.00 | 3.66 |
4728 | 5449 | 0.741221 | CTCCGCAACCTACCTCAAGC | 60.741 | 60.000 | 0.00 | 0.00 | 0.00 | 4.01 |
5005 | 5726 | 0.935898 | GCTCCTCGATGCACTTGATG | 59.064 | 55.000 | 0.00 | 0.00 | 0.00 | 3.07 |
5094 | 5815 | 1.853963 | GACAGCCCTCCTCTTGTCTA | 58.146 | 55.000 | 0.00 | 0.00 | 0.00 | 2.59 |
5143 | 5864 | 4.373116 | AGCGATCCGTTGGCACGT | 62.373 | 61.111 | 8.28 | 0.00 | 45.62 | 4.49 |
5610 | 6333 | 7.826690 | TCGTATAGACAAAGCATATATCAGCA | 58.173 | 34.615 | 2.61 | 0.00 | 0.00 | 4.41 |
5648 | 6371 | 0.248458 | GTTGCAACCACGACCAACAG | 60.248 | 55.000 | 19.15 | 0.00 | 37.93 | 3.16 |
5673 | 6396 | 4.116747 | AGAACAGTAAAGATGAGCTCCG | 57.883 | 45.455 | 12.15 | 0.00 | 0.00 | 4.63 |
5703 | 6426 | 2.711311 | CATGGATGAAGCACCGCG | 59.289 | 61.111 | 0.00 | 0.00 | 0.00 | 6.46 |
5724 | 6447 | 0.032540 | ACGTGGTTCGGTTACCTGAC | 59.967 | 55.000 | 0.00 | 0.00 | 44.69 | 3.51 |
5746 | 6537 | 4.503910 | TCTCCAAAACTGATCACATACCG | 58.496 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
5748 | 6539 | 4.333926 | GCCTCTCCAAAACTGATCACATAC | 59.666 | 45.833 | 0.00 | 0.00 | 0.00 | 2.39 |
5778 | 6569 | 3.732470 | GCCCACCGCTATGCTTAC | 58.268 | 61.111 | 0.00 | 0.00 | 0.00 | 2.34 |
5821 | 6612 | 0.320421 | GCTTTCAGCTGGTACCGTGA | 60.320 | 55.000 | 15.13 | 7.36 | 38.45 | 4.35 |
5888 | 6679 | 6.865205 | CAGAAGGGCTCAAAATTTAAACAGAG | 59.135 | 38.462 | 0.00 | 0.00 | 0.00 | 3.35 |
5902 | 6693 | 0.532573 | CGAGTAAGCAGAAGGGCTCA | 59.467 | 55.000 | 0.00 | 0.00 | 45.07 | 4.26 |
5955 | 6746 | 0.391661 | AGCACTGCCGTATCCTTGTG | 60.392 | 55.000 | 0.00 | 0.00 | 0.00 | 3.33 |
6001 | 6792 | 3.643978 | CTATGGCTTCGCGCAGGC | 61.644 | 66.667 | 24.52 | 24.52 | 41.67 | 4.85 |
6044 | 6835 | 2.281517 | CCCGCATAAACCACACGATAA | 58.718 | 47.619 | 0.00 | 0.00 | 0.00 | 1.75 |
6104 | 6906 | 0.913451 | AGGTGCTGCAATCCCTCTCT | 60.913 | 55.000 | 2.77 | 0.00 | 0.00 | 3.10 |
6169 | 7013 | 5.473504 | GTGCATATGTATCCCCGAGAAAAAT | 59.526 | 40.000 | 4.29 | 0.00 | 0.00 | 1.82 |
6176 | 7020 | 3.307410 | GGAATGTGCATATGTATCCCCGA | 60.307 | 47.826 | 4.29 | 0.00 | 0.00 | 5.14 |
6177 | 7021 | 3.009723 | GGAATGTGCATATGTATCCCCG | 58.990 | 50.000 | 4.29 | 0.00 | 0.00 | 5.73 |
6190 | 7034 | 2.747446 | ACAACAGGTATTCGGAATGTGC | 59.253 | 45.455 | 13.37 | 3.82 | 0.00 | 4.57 |
6206 | 7050 | 6.364165 | CGAGATTTCTACCGAAACTTACAACA | 59.636 | 38.462 | 0.00 | 0.00 | 41.58 | 3.33 |
6209 | 7053 | 6.017400 | ACGAGATTTCTACCGAAACTTACA | 57.983 | 37.500 | 0.00 | 0.00 | 41.58 | 2.41 |
6218 | 7062 | 5.888105 | TCTAAGGAAACGAGATTTCTACCG | 58.112 | 41.667 | 0.00 | 0.00 | 45.32 | 4.02 |
6231 | 7075 | 9.478768 | GTGGCTCTAGTATAAATCTAAGGAAAC | 57.521 | 37.037 | 0.00 | 0.00 | 0.00 | 2.78 |
6233 | 7077 | 7.722728 | TCGTGGCTCTAGTATAAATCTAAGGAA | 59.277 | 37.037 | 0.00 | 0.00 | 0.00 | 3.36 |
6234 | 7078 | 7.229308 | TCGTGGCTCTAGTATAAATCTAAGGA | 58.771 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
6235 | 7079 | 7.450124 | TCGTGGCTCTAGTATAAATCTAAGG | 57.550 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
6236 | 7080 | 8.731605 | TCATCGTGGCTCTAGTATAAATCTAAG | 58.268 | 37.037 | 0.00 | 0.00 | 0.00 | 2.18 |
6237 | 7081 | 8.631480 | TCATCGTGGCTCTAGTATAAATCTAA | 57.369 | 34.615 | 0.00 | 0.00 | 0.00 | 2.10 |
6238 | 7082 | 8.809468 | ATCATCGTGGCTCTAGTATAAATCTA | 57.191 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
6239 | 7083 | 7.710676 | ATCATCGTGGCTCTAGTATAAATCT | 57.289 | 36.000 | 0.00 | 0.00 | 0.00 | 2.40 |
6240 | 7084 | 8.764524 | AAATCATCGTGGCTCTAGTATAAATC | 57.235 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
6241 | 7085 | 9.862371 | CTAAATCATCGTGGCTCTAGTATAAAT | 57.138 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
6242 | 7086 | 8.857098 | ACTAAATCATCGTGGCTCTAGTATAAA | 58.143 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
6243 | 7087 | 8.405418 | ACTAAATCATCGTGGCTCTAGTATAA | 57.595 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
6244 | 7088 | 7.883833 | AGACTAAATCATCGTGGCTCTAGTATA | 59.116 | 37.037 | 0.00 | 0.00 | 0.00 | 1.47 |
6245 | 7089 | 6.717540 | AGACTAAATCATCGTGGCTCTAGTAT | 59.282 | 38.462 | 0.00 | 0.00 | 0.00 | 2.12 |
6246 | 7090 | 6.062749 | AGACTAAATCATCGTGGCTCTAGTA | 58.937 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
6247 | 7091 | 4.890581 | AGACTAAATCATCGTGGCTCTAGT | 59.109 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
6248 | 7092 | 5.009110 | TGAGACTAAATCATCGTGGCTCTAG | 59.991 | 44.000 | 0.00 | 0.00 | 0.00 | 2.43 |
6249 | 7093 | 4.887655 | TGAGACTAAATCATCGTGGCTCTA | 59.112 | 41.667 | 0.00 | 0.00 | 0.00 | 2.43 |
6250 | 7094 | 3.701542 | TGAGACTAAATCATCGTGGCTCT | 59.298 | 43.478 | 0.00 | 0.00 | 0.00 | 4.09 |
6251 | 7095 | 4.046938 | TGAGACTAAATCATCGTGGCTC | 57.953 | 45.455 | 0.00 | 0.00 | 0.00 | 4.70 |
6252 | 7096 | 4.437239 | CTTGAGACTAAATCATCGTGGCT | 58.563 | 43.478 | 0.00 | 0.00 | 0.00 | 4.75 |
6253 | 7097 | 3.001736 | GCTTGAGACTAAATCATCGTGGC | 59.998 | 47.826 | 0.00 | 0.00 | 0.00 | 5.01 |
6254 | 7098 | 4.437239 | AGCTTGAGACTAAATCATCGTGG | 58.563 | 43.478 | 0.00 | 0.00 | 0.00 | 4.94 |
6255 | 7099 | 7.063426 | TGTTTAGCTTGAGACTAAATCATCGTG | 59.937 | 37.037 | 0.00 | 0.00 | 40.62 | 4.35 |
6256 | 7100 | 7.097192 | TGTTTAGCTTGAGACTAAATCATCGT | 58.903 | 34.615 | 0.00 | 0.00 | 40.62 | 3.73 |
6257 | 7101 | 7.525688 | TGTTTAGCTTGAGACTAAATCATCG | 57.474 | 36.000 | 0.00 | 0.00 | 40.62 | 3.84 |
6260 | 7104 | 8.567948 | CCTTTTGTTTAGCTTGAGACTAAATCA | 58.432 | 33.333 | 0.00 | 0.00 | 40.62 | 2.57 |
6261 | 7105 | 7.539022 | GCCTTTTGTTTAGCTTGAGACTAAATC | 59.461 | 37.037 | 0.00 | 0.00 | 40.62 | 2.17 |
6262 | 7106 | 7.014230 | TGCCTTTTGTTTAGCTTGAGACTAAAT | 59.986 | 33.333 | 0.00 | 0.00 | 40.62 | 1.40 |
6263 | 7107 | 6.320164 | TGCCTTTTGTTTAGCTTGAGACTAAA | 59.680 | 34.615 | 0.00 | 0.00 | 37.28 | 1.85 |
6264 | 7108 | 5.825679 | TGCCTTTTGTTTAGCTTGAGACTAA | 59.174 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
6265 | 7109 | 5.373222 | TGCCTTTTGTTTAGCTTGAGACTA | 58.627 | 37.500 | 0.00 | 0.00 | 0.00 | 2.59 |
6266 | 7110 | 4.207165 | TGCCTTTTGTTTAGCTTGAGACT | 58.793 | 39.130 | 0.00 | 0.00 | 0.00 | 3.24 |
6267 | 7111 | 4.568152 | TGCCTTTTGTTTAGCTTGAGAC | 57.432 | 40.909 | 0.00 | 0.00 | 0.00 | 3.36 |
6268 | 7112 | 4.037923 | CCTTGCCTTTTGTTTAGCTTGAGA | 59.962 | 41.667 | 0.00 | 0.00 | 0.00 | 3.27 |
6269 | 7113 | 4.301628 | CCTTGCCTTTTGTTTAGCTTGAG | 58.698 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
6270 | 7114 | 3.069443 | CCCTTGCCTTTTGTTTAGCTTGA | 59.931 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
6271 | 7115 | 3.181466 | ACCCTTGCCTTTTGTTTAGCTTG | 60.181 | 43.478 | 0.00 | 0.00 | 0.00 | 4.01 |
6272 | 7116 | 3.038280 | ACCCTTGCCTTTTGTTTAGCTT | 58.962 | 40.909 | 0.00 | 0.00 | 0.00 | 3.74 |
6273 | 7117 | 2.677914 | ACCCTTGCCTTTTGTTTAGCT | 58.322 | 42.857 | 0.00 | 0.00 | 0.00 | 3.32 |
6274 | 7118 | 3.469008 | AACCCTTGCCTTTTGTTTAGC | 57.531 | 42.857 | 0.00 | 0.00 | 0.00 | 3.09 |
6275 | 7119 | 4.765273 | ACAAACCCTTGCCTTTTGTTTAG | 58.235 | 39.130 | 0.00 | 0.00 | 39.82 | 1.85 |
6276 | 7120 | 4.828072 | ACAAACCCTTGCCTTTTGTTTA | 57.172 | 36.364 | 0.00 | 0.00 | 39.82 | 2.01 |
6277 | 7121 | 3.712016 | ACAAACCCTTGCCTTTTGTTT | 57.288 | 38.095 | 0.00 | 0.00 | 39.82 | 2.83 |
6278 | 7122 | 3.712016 | AACAAACCCTTGCCTTTTGTT | 57.288 | 38.095 | 5.97 | 5.97 | 44.65 | 2.83 |
6279 | 7123 | 3.712016 | AAACAAACCCTTGCCTTTTGT | 57.288 | 38.095 | 0.00 | 0.00 | 43.61 | 2.83 |
6280 | 7124 | 3.128415 | CCAAAACAAACCCTTGCCTTTTG | 59.872 | 43.478 | 6.67 | 6.67 | 37.79 | 2.44 |
6281 | 7125 | 3.351740 | CCAAAACAAACCCTTGCCTTTT | 58.648 | 40.909 | 0.00 | 0.00 | 35.84 | 2.27 |
6282 | 7126 | 2.356638 | CCCAAAACAAACCCTTGCCTTT | 60.357 | 45.455 | 0.00 | 0.00 | 35.84 | 3.11 |
6283 | 7127 | 1.211703 | CCCAAAACAAACCCTTGCCTT | 59.788 | 47.619 | 0.00 | 0.00 | 35.84 | 4.35 |
6284 | 7128 | 0.836606 | CCCAAAACAAACCCTTGCCT | 59.163 | 50.000 | 0.00 | 0.00 | 35.84 | 4.75 |
6285 | 7129 | 0.817634 | GCCCAAAACAAACCCTTGCC | 60.818 | 55.000 | 0.00 | 0.00 | 35.84 | 4.52 |
6286 | 7130 | 0.180171 | AGCCCAAAACAAACCCTTGC | 59.820 | 50.000 | 0.00 | 0.00 | 35.84 | 4.01 |
6287 | 7131 | 4.770010 | TCTATAGCCCAAAACAAACCCTTG | 59.230 | 41.667 | 0.00 | 0.00 | 38.61 | 3.61 |
6288 | 7132 | 5.005628 | TCTATAGCCCAAAACAAACCCTT | 57.994 | 39.130 | 0.00 | 0.00 | 0.00 | 3.95 |
6289 | 7133 | 4.668138 | TCTATAGCCCAAAACAAACCCT | 57.332 | 40.909 | 0.00 | 0.00 | 0.00 | 4.34 |
6290 | 7134 | 5.731957 | TTTCTATAGCCCAAAACAAACCC | 57.268 | 39.130 | 0.00 | 0.00 | 0.00 | 4.11 |
6318 | 7162 | 9.542462 | TTTCTCCTATATACCGTCAGAATTTTG | 57.458 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
6322 | 7166 | 8.314751 | CCATTTTCTCCTATATACCGTCAGAAT | 58.685 | 37.037 | 0.00 | 0.00 | 0.00 | 2.40 |
6323 | 7167 | 7.507956 | TCCATTTTCTCCTATATACCGTCAGAA | 59.492 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
6330 | 7174 | 6.721318 | TGGCATCCATTTTCTCCTATATACC | 58.279 | 40.000 | 0.00 | 0.00 | 0.00 | 2.73 |
6405 | 7249 | 4.885325 | AGACTCGGTAAAAAGCTGGAAAAA | 59.115 | 37.500 | 0.00 | 0.00 | 0.00 | 1.94 |
6410 | 7254 | 3.933332 | CCTAAGACTCGGTAAAAAGCTGG | 59.067 | 47.826 | 0.00 | 0.00 | 0.00 | 4.85 |
6414 | 7258 | 6.649557 | ACACATTCCTAAGACTCGGTAAAAAG | 59.350 | 38.462 | 0.00 | 0.00 | 0.00 | 2.27 |
6424 | 7268 | 6.859112 | AGACATACACACATTCCTAAGACT | 57.141 | 37.500 | 0.00 | 0.00 | 0.00 | 3.24 |
6429 | 7273 | 5.047590 | ACGTGAAGACATACACACATTCCTA | 60.048 | 40.000 | 0.00 | 0.00 | 36.91 | 2.94 |
6436 | 7280 | 6.699895 | TCAAATACGTGAAGACATACACAC | 57.300 | 37.500 | 0.00 | 0.00 | 36.91 | 3.82 |
6500 | 7344 | 4.163427 | TCCATTGCCCTTGGTATTTGAAA | 58.837 | 39.130 | 0.00 | 0.00 | 35.64 | 2.69 |
6504 | 7348 | 2.110578 | GCTCCATTGCCCTTGGTATTT | 58.889 | 47.619 | 0.00 | 0.00 | 35.64 | 1.40 |
6527 | 7371 | 5.567138 | ATCAAAAAGTGCATACAGCTACC | 57.433 | 39.130 | 0.00 | 0.00 | 45.94 | 3.18 |
6534 | 7378 | 5.232838 | GCTATGGCAATCAAAAAGTGCATAC | 59.767 | 40.000 | 0.00 | 0.00 | 40.12 | 2.39 |
6535 | 7379 | 5.105432 | TGCTATGGCAATCAAAAAGTGCATA | 60.105 | 36.000 | 0.00 | 0.00 | 46.36 | 3.14 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.