Multiple sequence alignment - TraesCS5B01G163800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G163800 chr5B 100.000 3012 0 0 2914 5925 303596432 303593421 0.000000e+00 5563.0
1 TraesCS5B01G163800 chr5B 100.000 1840 0 0 1 1840 303599345 303597506 0.000000e+00 3398.0
2 TraesCS5B01G163800 chr5B 100.000 531 0 0 2076 2606 303597270 303596740 0.000000e+00 981.0
3 TraesCS5B01G163800 chr5B 97.436 195 5 0 5185 5379 303589323 303589129 3.420000e-87 333.0
4 TraesCS5B01G163800 chr5B 90.323 93 9 0 2136 2228 532108713 532108805 8.060000e-24 122.0
5 TraesCS5B01G163800 chr5D 92.479 1795 65 19 3451 5185 268342052 268340268 0.000000e+00 2503.0
6 TraesCS5B01G163800 chr5D 95.447 1208 45 5 633 1840 268344734 268343537 0.000000e+00 1917.0
7 TraesCS5B01G163800 chr5D 90.885 757 46 4 5186 5920 298998662 298999417 0.000000e+00 994.0
8 TraesCS5B01G163800 chr5D 98.000 550 11 0 2914 3463 268342622 268342073 0.000000e+00 955.0
9 TraesCS5B01G163800 chr5D 93.958 480 24 4 2085 2560 268343191 268342713 0.000000e+00 721.0
10 TraesCS5B01G163800 chr5D 83.510 661 67 18 5275 5925 548457888 548457260 3.980000e-161 579.0
11 TraesCS5B01G163800 chr5D 90.306 196 17 2 5185 5379 299003497 299003691 7.620000e-64 255.0
12 TraesCS5B01G163800 chr5D 85.833 120 16 1 2125 2244 257162795 257162677 6.230000e-25 126.0
13 TraesCS5B01G163800 chr5D 95.238 63 3 0 2544 2606 268342703 268342641 3.780000e-17 100.0
14 TraesCS5B01G163800 chr5D 82.524 103 17 1 2125 2227 510828140 510828039 8.180000e-14 89.8
15 TraesCS5B01G163800 chr5A 93.394 1211 50 14 631 1840 355472140 355470959 0.000000e+00 1766.0
16 TraesCS5B01G163800 chr5A 94.682 1147 37 10 4057 5185 355469008 355467868 0.000000e+00 1759.0
17 TraesCS5B01G163800 chr5A 94.479 1123 51 7 2914 4028 355470213 355469094 0.000000e+00 1720.0
18 TraesCS5B01G163800 chr5A 94.539 531 25 3 2077 2604 355470764 355470235 0.000000e+00 817.0
19 TraesCS5B01G163800 chr2B 94.016 752 24 2 5195 5925 668015781 668016532 0.000000e+00 1120.0
20 TraesCS5B01G163800 chr2B 91.276 768 39 5 5185 5925 799342110 799342876 0.000000e+00 1022.0
21 TraesCS5B01G163800 chr2B 95.385 195 8 1 5185 5379 668022502 668022695 5.770000e-80 309.0
22 TraesCS5B01G163800 chr2B 92.347 196 13 2 5185 5379 799347011 799347205 1.630000e-70 278.0
23 TraesCS5B01G163800 chr2B 84.034 119 18 1 2125 2243 497026011 497025894 4.850000e-21 113.0
24 TraesCS5B01G163800 chr2B 92.157 51 3 1 1337 1386 674302602 674302652 2.960000e-08 71.3
25 TraesCS5B01G163800 chr1B 91.111 765 43 5 5185 5925 37761400 37760637 0.000000e+00 1013.0
26 TraesCS5B01G163800 chr1B 92.308 442 18 5 179 617 190930901 190931329 1.090000e-171 614.0
27 TraesCS5B01G163800 chr1B 90.950 442 23 5 178 617 345536222 345536648 3.980000e-161 579.0
28 TraesCS5B01G163800 chr1B 91.919 198 15 1 5185 5382 37756570 37756374 5.850000e-70 276.0
29 TraesCS5B01G163800 chr1B 86.087 115 15 1 2126 2240 453509334 453509447 8.060000e-24 122.0
30 TraesCS5B01G163800 chr1B 80.165 121 10 11 2126 2244 249625004 249624896 1.770000e-10 78.7
31 TraesCS5B01G163800 chr1A 89.262 745 72 6 5186 5925 16086713 16087454 0.000000e+00 926.0
32 TraesCS5B01G163800 chr1A 90.541 74 6 1 2167 2240 391675087 391675159 4.890000e-16 97.1
33 TraesCS5B01G163800 chr1A 89.189 74 7 1 2173 2246 544141277 544141205 2.270000e-14 91.6
34 TraesCS5B01G163800 chr1A 88.000 75 8 1 2166 2240 592071394 592071467 2.940000e-13 87.9
35 TraesCS5B01G163800 chr1A 85.714 77 10 1 2167 2243 80309095 80309020 4.920000e-11 80.5
36 TraesCS5B01G163800 chr1A 94.737 38 2 0 2133 2170 410438171 410438134 6.410000e-05 60.2
37 TraesCS5B01G163800 chr7D 88.366 765 61 11 5185 5925 312553291 312554051 0.000000e+00 894.0
38 TraesCS5B01G163800 chr7D 85.438 776 74 14 5185 5925 583964394 583963623 0.000000e+00 771.0
39 TraesCS5B01G163800 chr7D 88.525 427 32 7 228 650 560323346 560322933 8.860000e-138 501.0
40 TraesCS5B01G163800 chr7D 85.593 118 16 1 2126 2243 32015240 32015124 8.060000e-24 122.0
41 TraesCS5B01G163800 chr7D 88.333 60 3 3 1323 1381 431033969 431033913 1.070000e-07 69.4
42 TraesCS5B01G163800 chr7D 94.595 37 2 0 2126 2162 523270915 523270951 2.310000e-04 58.4
43 TraesCS5B01G163800 chr7B 83.501 697 79 23 5251 5920 707945717 707945030 8.440000e-173 617.0
44 TraesCS5B01G163800 chr7B 89.977 439 27 6 177 612 493491797 493491373 8.680000e-153 551.0
45 TraesCS5B01G163800 chr7B 84.677 124 17 2 2121 2244 633219857 633219978 8.060000e-24 122.0
46 TraesCS5B01G163800 chr3B 91.284 436 23 5 185 617 46737743 46737320 1.110000e-161 580.0
47 TraesCS5B01G163800 chr3B 90.541 444 26 5 177 617 420655615 420656045 1.850000e-159 573.0
48 TraesCS5B01G163800 chr3B 89.202 426 30 6 228 650 544861163 544861575 8.800000e-143 518.0
49 TraesCS5B01G163800 chr3B 88.136 59 4 3 1323 1379 76489620 76489563 3.830000e-07 67.6
50 TraesCS5B01G163800 chr2A 90.868 438 24 5 177 611 377124329 377123905 1.850000e-159 573.0
51 TraesCS5B01G163800 chr6B 89.865 444 28 6 177 617 610413661 610414090 6.710000e-154 555.0
52 TraesCS5B01G163800 chr6B 87.500 120 12 2 2125 2244 487002795 487002911 1.040000e-27 135.0
53 TraesCS5B01G163800 chr4A 90.802 424 23 5 230 650 649714066 649714476 2.410000e-153 553.0
54 TraesCS5B01G163800 chr4A 90.995 422 21 5 230 647 649748928 649749336 2.410000e-153 553.0
55 TraesCS5B01G163800 chr4A 90.602 415 23 5 230 641 649678426 649678827 2.430000e-148 536.0
56 TraesCS5B01G163800 chr6D 89.616 443 30 5 177 616 431327857 431327428 3.120000e-152 549.0
57 TraesCS5B01G163800 chr4B 89.145 433 38 6 188 617 157171330 157171756 1.130000e-146 531.0
58 TraesCS5B01G163800 chr4B 88.684 433 26 9 228 650 68126826 68126407 1.910000e-139 507.0
59 TraesCS5B01G163800 chrUn 89.202 426 30 6 228 650 258977037 258976625 8.800000e-143 518.0
60 TraesCS5B01G163800 chrUn 87.931 58 4 2 1321 1377 376482435 376482490 1.380000e-06 65.8
61 TraesCS5B01G163800 chr2D 87.972 424 34 7 228 647 308705655 308706065 8.930000e-133 484.0
62 TraesCS5B01G163800 chr1D 90.083 121 9 3 2121 2240 42284723 42284841 2.860000e-33 154.0
63 TraesCS5B01G163800 chr1D 88.462 78 8 1 2166 2243 73738968 73738892 6.320000e-15 93.5
64 TraesCS5B01G163800 chr1D 80.000 115 11 9 2126 2239 169065296 169065399 2.290000e-09 75.0
65 TraesCS5B01G163800 chr1D 95.745 47 0 2 1337 1381 204855516 204855562 2.290000e-09 75.0
66 TraesCS5B01G163800 chr1D 77.863 131 21 7 2119 2247 287458580 287458704 2.290000e-09 75.0
67 TraesCS5B01G163800 chr6A 84.034 119 18 1 2125 2243 558887678 558887561 4.850000e-21 113.0
68 TraesCS5B01G163800 chr6A 95.745 47 1 1 1336 1381 609594927 609594973 2.290000e-09 75.0
69 TraesCS5B01G163800 chr3D 89.286 56 3 3 1336 1389 7258078 7258024 3.830000e-07 67.6
70 TraesCS5B01G163800 chr3D 97.143 35 1 0 2126 2160 612283990 612283956 6.410000e-05 60.2
71 TraesCS5B01G163800 chr3D 100.000 28 0 0 2125 2152 311668929 311668902 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G163800 chr5B 303593421 303599345 5924 True 3314.0 5563 100.0000 1 5925 3 chr5B.!!$R2 5924
1 TraesCS5B01G163800 chr5D 268340268 268344734 4466 True 1239.2 2503 95.0244 633 5185 5 chr5D.!!$R4 4552
2 TraesCS5B01G163800 chr5D 298998662 298999417 755 False 994.0 994 90.8850 5186 5920 1 chr5D.!!$F1 734
3 TraesCS5B01G163800 chr5D 548457260 548457888 628 True 579.0 579 83.5100 5275 5925 1 chr5D.!!$R3 650
4 TraesCS5B01G163800 chr5A 355467868 355472140 4272 True 1515.5 1766 94.2735 631 5185 4 chr5A.!!$R1 4554
5 TraesCS5B01G163800 chr2B 668015781 668016532 751 False 1120.0 1120 94.0160 5195 5925 1 chr2B.!!$F1 730
6 TraesCS5B01G163800 chr2B 799342110 799342876 766 False 1022.0 1022 91.2760 5185 5925 1 chr2B.!!$F4 740
7 TraesCS5B01G163800 chr1B 37760637 37761400 763 True 1013.0 1013 91.1110 5185 5925 1 chr1B.!!$R2 740
8 TraesCS5B01G163800 chr1A 16086713 16087454 741 False 926.0 926 89.2620 5186 5925 1 chr1A.!!$F1 739
9 TraesCS5B01G163800 chr7D 312553291 312554051 760 False 894.0 894 88.3660 5185 5925 1 chr7D.!!$F1 740
10 TraesCS5B01G163800 chr7D 583963623 583964394 771 True 771.0 771 85.4380 5185 5925 1 chr7D.!!$R4 740
11 TraesCS5B01G163800 chr7B 707945030 707945717 687 True 617.0 617 83.5010 5251 5920 1 chr7B.!!$R2 669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 65 0.106894 GGTCATCACCCCGATCCTTC 59.893 60.0 0.00 0.00 36.54 3.46 F
72 73 0.107654 CCCCGATCCTTCAGTTGGTC 60.108 60.0 0.00 0.00 0.00 4.02 F
73 74 0.613260 CCCGATCCTTCAGTTGGTCA 59.387 55.0 0.00 0.00 0.00 4.02 F
609 610 0.843984 CCGGGTGGTAGGATGGATTT 59.156 55.0 0.00 0.00 0.00 2.17 F
649 650 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.0 0.00 0.00 0.00 3.82 F
2271 2385 1.092348 CTCACTCACCCATGCATGTG 58.908 55.0 24.58 16.74 0.00 3.21 F
2494 2608 0.178953 AATGCTGTTGGAGTGGGCTT 60.179 50.0 0.00 0.00 0.00 4.35 F
3807 3988 0.743345 GATACCAGTGTTCCCCGTGC 60.743 60.0 0.00 0.00 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1092 1099 1.416401 CGCTTTCCTCCATTAGGCCTA 59.584 52.381 8.91 8.91 46.10 3.93 R
1314 1321 3.093814 TGAACGCAGGGAGTAACTCATA 58.906 45.455 0.00 0.00 31.08 2.15 R
1598 1605 3.305813 CCATCTGCATGCAAGTCAAAGTT 60.306 43.478 22.88 0.12 0.00 2.66 R
2213 2327 3.055458 TCCATCCTGAATTACTTGTCGCA 60.055 43.478 0.00 0.00 0.00 5.10 R
2317 2431 4.666512 ACCTGCCAACTGAACATTTCTAT 58.333 39.130 0.00 0.00 0.00 1.98 R
4030 4211 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82 R
4202 4441 4.091549 ACATGTAACTTTCCTAGTCCCGA 58.908 43.478 0.00 0.00 35.54 5.14 R
5687 6025 0.106769 TGGACAACCATGGCGCATAT 60.107 50.000 13.04 0.00 41.77 1.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 7.986085 TTCTTTAGCATAAGCCTATTCATCC 57.014 36.000 0.00 0.00 43.56 3.51
39 40 6.476378 TCTTTAGCATAAGCCTATTCATCCC 58.524 40.000 0.00 0.00 43.56 3.85
40 41 6.273260 TCTTTAGCATAAGCCTATTCATCCCT 59.727 38.462 0.00 0.00 43.56 4.20
41 42 6.454223 TTAGCATAAGCCTATTCATCCCTT 57.546 37.500 0.00 0.00 43.56 3.95
42 43 4.916183 AGCATAAGCCTATTCATCCCTTC 58.084 43.478 0.00 0.00 43.56 3.46
43 44 4.013050 GCATAAGCCTATTCATCCCTTCC 58.987 47.826 0.00 0.00 33.58 3.46
44 45 2.938956 AAGCCTATTCATCCCTTCCG 57.061 50.000 0.00 0.00 0.00 4.30
45 46 1.059913 AGCCTATTCATCCCTTCCGG 58.940 55.000 0.00 0.00 0.00 5.14
54 55 2.590092 CCCTTCCGGGTCATCACC 59.410 66.667 0.00 0.00 46.12 4.02
62 63 3.971894 GGTCATCACCCCGATCCT 58.028 61.111 0.00 0.00 36.54 3.24
63 64 2.221918 GGTCATCACCCCGATCCTT 58.778 57.895 0.00 0.00 36.54 3.36
64 65 0.106894 GGTCATCACCCCGATCCTTC 59.893 60.000 0.00 0.00 36.54 3.46
65 66 0.830648 GTCATCACCCCGATCCTTCA 59.169 55.000 0.00 0.00 29.21 3.02
66 67 1.123077 TCATCACCCCGATCCTTCAG 58.877 55.000 0.00 0.00 29.21 3.02
67 68 0.833287 CATCACCCCGATCCTTCAGT 59.167 55.000 0.00 0.00 29.21 3.41
68 69 1.210478 CATCACCCCGATCCTTCAGTT 59.790 52.381 0.00 0.00 29.21 3.16
69 70 0.613260 TCACCCCGATCCTTCAGTTG 59.387 55.000 0.00 0.00 0.00 3.16
70 71 0.392998 CACCCCGATCCTTCAGTTGG 60.393 60.000 0.00 0.00 0.00 3.77
71 72 0.840722 ACCCCGATCCTTCAGTTGGT 60.841 55.000 0.00 0.00 0.00 3.67
72 73 0.107654 CCCCGATCCTTCAGTTGGTC 60.108 60.000 0.00 0.00 0.00 4.02
73 74 0.613260 CCCGATCCTTCAGTTGGTCA 59.387 55.000 0.00 0.00 0.00 4.02
74 75 1.003118 CCCGATCCTTCAGTTGGTCAA 59.997 52.381 0.00 0.00 0.00 3.18
75 76 2.350522 CCGATCCTTCAGTTGGTCAAG 58.649 52.381 0.00 0.00 0.00 3.02
76 77 2.289694 CCGATCCTTCAGTTGGTCAAGT 60.290 50.000 0.00 0.00 0.00 3.16
77 78 3.403038 CGATCCTTCAGTTGGTCAAGTT 58.597 45.455 0.00 0.00 0.00 2.66
78 79 3.815401 CGATCCTTCAGTTGGTCAAGTTT 59.185 43.478 0.00 0.00 0.00 2.66
79 80 4.083802 CGATCCTTCAGTTGGTCAAGTTTC 60.084 45.833 0.00 0.00 0.00 2.78
80 81 4.503714 TCCTTCAGTTGGTCAAGTTTCT 57.496 40.909 0.00 0.00 0.00 2.52
81 82 4.855340 TCCTTCAGTTGGTCAAGTTTCTT 58.145 39.130 0.00 0.00 0.00 2.52
82 83 4.640201 TCCTTCAGTTGGTCAAGTTTCTTG 59.360 41.667 3.44 3.44 0.00 3.02
83 84 4.354587 CTTCAGTTGGTCAAGTTTCTTGC 58.645 43.478 4.82 1.36 0.00 4.01
84 85 3.620488 TCAGTTGGTCAAGTTTCTTGCT 58.380 40.909 4.82 0.00 0.00 3.91
85 86 4.776349 TCAGTTGGTCAAGTTTCTTGCTA 58.224 39.130 4.82 0.00 0.00 3.49
86 87 5.376625 TCAGTTGGTCAAGTTTCTTGCTAT 58.623 37.500 4.82 0.00 0.00 2.97
87 88 5.470098 TCAGTTGGTCAAGTTTCTTGCTATC 59.530 40.000 4.82 0.00 0.00 2.08
88 89 5.471456 CAGTTGGTCAAGTTTCTTGCTATCT 59.529 40.000 4.82 1.78 0.00 1.98
89 90 5.703130 AGTTGGTCAAGTTTCTTGCTATCTC 59.297 40.000 4.82 0.00 0.00 2.75
90 91 5.227569 TGGTCAAGTTTCTTGCTATCTCA 57.772 39.130 4.82 0.00 0.00 3.27
91 92 5.620206 TGGTCAAGTTTCTTGCTATCTCAA 58.380 37.500 4.82 0.00 0.00 3.02
92 93 6.061441 TGGTCAAGTTTCTTGCTATCTCAAA 58.939 36.000 4.82 0.00 0.00 2.69
93 94 6.545666 TGGTCAAGTTTCTTGCTATCTCAAAA 59.454 34.615 4.82 0.00 0.00 2.44
94 95 7.068103 TGGTCAAGTTTCTTGCTATCTCAAAAA 59.932 33.333 4.82 0.00 0.00 1.94
95 96 8.084684 GGTCAAGTTTCTTGCTATCTCAAAAAT 58.915 33.333 4.82 0.00 0.00 1.82
96 97 8.909671 GTCAAGTTTCTTGCTATCTCAAAAATG 58.090 33.333 4.82 0.00 0.00 2.32
97 98 8.632679 TCAAGTTTCTTGCTATCTCAAAAATGT 58.367 29.630 4.82 0.00 0.00 2.71
98 99 9.252962 CAAGTTTCTTGCTATCTCAAAAATGTT 57.747 29.630 0.00 0.00 0.00 2.71
129 130 7.936950 ATAGAAGACATGATACACATTCACG 57.063 36.000 0.00 0.00 37.07 4.35
130 131 5.965922 AGAAGACATGATACACATTCACGA 58.034 37.500 0.00 0.00 37.07 4.35
131 132 6.038985 AGAAGACATGATACACATTCACGAG 58.961 40.000 0.00 0.00 37.07 4.18
132 133 4.115516 AGACATGATACACATTCACGAGC 58.884 43.478 0.00 0.00 37.07 5.03
133 134 3.860641 ACATGATACACATTCACGAGCA 58.139 40.909 0.00 0.00 37.07 4.26
134 135 3.618594 ACATGATACACATTCACGAGCAC 59.381 43.478 0.00 0.00 37.07 4.40
135 136 3.311486 TGATACACATTCACGAGCACA 57.689 42.857 0.00 0.00 0.00 4.57
136 137 3.860641 TGATACACATTCACGAGCACAT 58.139 40.909 0.00 0.00 0.00 3.21
137 138 3.618150 TGATACACATTCACGAGCACATG 59.382 43.478 0.00 0.00 0.00 3.21
138 139 2.168326 ACACATTCACGAGCACATGA 57.832 45.000 0.00 0.00 0.00 3.07
139 140 2.071540 ACACATTCACGAGCACATGAG 58.928 47.619 0.00 0.00 0.00 2.90
140 141 2.289010 ACACATTCACGAGCACATGAGA 60.289 45.455 0.00 0.00 0.00 3.27
141 142 2.738314 CACATTCACGAGCACATGAGAA 59.262 45.455 0.00 0.00 0.00 2.87
142 143 3.373130 CACATTCACGAGCACATGAGAAT 59.627 43.478 0.00 0.00 0.00 2.40
143 144 4.005650 ACATTCACGAGCACATGAGAATT 58.994 39.130 0.00 0.00 0.00 2.17
144 145 4.093998 ACATTCACGAGCACATGAGAATTC 59.906 41.667 0.00 0.00 0.00 2.17
145 146 3.599730 TCACGAGCACATGAGAATTCT 57.400 42.857 7.95 7.95 0.00 2.40
146 147 3.930336 TCACGAGCACATGAGAATTCTT 58.070 40.909 9.87 0.00 0.00 2.52
147 148 3.681417 TCACGAGCACATGAGAATTCTTG 59.319 43.478 9.87 7.50 35.28 3.02
148 149 3.434641 CACGAGCACATGAGAATTCTTGT 59.565 43.478 9.87 8.19 41.01 3.16
154 155 4.371624 ACATGAGAATTCTTGTGGGTCA 57.628 40.909 9.87 1.49 39.45 4.02
155 156 4.927049 ACATGAGAATTCTTGTGGGTCAT 58.073 39.130 9.87 3.95 39.45 3.06
156 157 5.327732 ACATGAGAATTCTTGTGGGTCATT 58.672 37.500 9.87 0.00 39.45 2.57
157 158 6.484288 ACATGAGAATTCTTGTGGGTCATTA 58.516 36.000 9.87 0.00 39.45 1.90
158 159 6.947733 ACATGAGAATTCTTGTGGGTCATTAA 59.052 34.615 9.87 0.00 39.45 1.40
159 160 7.616935 ACATGAGAATTCTTGTGGGTCATTAAT 59.383 33.333 9.87 0.00 39.45 1.40
160 161 9.123902 CATGAGAATTCTTGTGGGTCATTAATA 57.876 33.333 9.87 0.00 0.00 0.98
161 162 9.872684 ATGAGAATTCTTGTGGGTCATTAATAT 57.127 29.630 9.87 0.00 0.00 1.28
162 163 9.123902 TGAGAATTCTTGTGGGTCATTAATATG 57.876 33.333 9.87 0.00 0.00 1.78
163 164 9.125026 GAGAATTCTTGTGGGTCATTAATATGT 57.875 33.333 9.87 0.00 33.34 2.29
228 229 8.821686 ATATAGAGAGAGAGAGAGAGAGAGAG 57.178 42.308 0.00 0.00 0.00 3.20
229 230 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
230 231 4.078922 AGAGAGAGAGAGAGAGAGAGAGGA 60.079 50.000 0.00 0.00 0.00 3.71
231 232 3.964031 AGAGAGAGAGAGAGAGAGAGGAC 59.036 52.174 0.00 0.00 0.00 3.85
232 233 3.706594 GAGAGAGAGAGAGAGAGAGGACA 59.293 52.174 0.00 0.00 0.00 4.02
233 234 4.104086 AGAGAGAGAGAGAGAGAGGACAA 58.896 47.826 0.00 0.00 0.00 3.18
234 235 4.536090 AGAGAGAGAGAGAGAGAGGACAAA 59.464 45.833 0.00 0.00 0.00 2.83
235 236 5.192522 AGAGAGAGAGAGAGAGAGGACAAAT 59.807 44.000 0.00 0.00 0.00 2.32
236 237 5.195940 AGAGAGAGAGAGAGAGGACAAATG 58.804 45.833 0.00 0.00 0.00 2.32
237 238 4.934356 AGAGAGAGAGAGAGGACAAATGT 58.066 43.478 0.00 0.00 0.00 2.71
238 239 5.332743 AGAGAGAGAGAGAGGACAAATGTT 58.667 41.667 0.00 0.00 0.00 2.71
239 240 5.779771 AGAGAGAGAGAGAGGACAAATGTTT 59.220 40.000 0.00 0.00 0.00 2.83
240 241 6.036577 AGAGAGAGAGAGGACAAATGTTTC 57.963 41.667 0.00 0.00 0.00 2.78
241 242 5.046663 AGAGAGAGAGAGGACAAATGTTTCC 60.047 44.000 0.00 0.00 0.00 3.13
242 243 4.843516 AGAGAGAGAGGACAAATGTTTCCT 59.156 41.667 0.00 0.00 45.49 3.36
243 244 6.019748 AGAGAGAGAGGACAAATGTTTCCTA 58.980 40.000 0.00 0.00 42.68 2.94
244 245 6.043854 AGAGAGAGGACAAATGTTTCCTAC 57.956 41.667 0.00 0.00 42.68 3.18
245 246 5.544176 AGAGAGAGGACAAATGTTTCCTACA 59.456 40.000 0.00 0.00 42.68 2.74
246 247 6.043243 AGAGAGAGGACAAATGTTTCCTACAA 59.957 38.462 0.00 0.00 42.68 2.41
247 248 6.601332 AGAGAGGACAAATGTTTCCTACAAA 58.399 36.000 0.00 0.00 42.68 2.83
248 249 6.486993 AGAGAGGACAAATGTTTCCTACAAAC 59.513 38.462 0.00 0.00 42.68 2.93
249 250 6.126409 AGAGGACAAATGTTTCCTACAAACA 58.874 36.000 2.55 2.55 42.68 2.83
250 251 6.263168 AGAGGACAAATGTTTCCTACAAACAG 59.737 38.462 6.13 0.00 42.68 3.16
251 252 5.891551 AGGACAAATGTTTCCTACAAACAGT 59.108 36.000 6.13 0.73 40.70 3.55
252 253 5.977129 GGACAAATGTTTCCTACAAACAGTG 59.023 40.000 6.13 8.43 42.57 3.66
253 254 5.901552 ACAAATGTTTCCTACAAACAGTGG 58.098 37.500 13.83 8.68 42.57 4.00
254 255 5.420739 ACAAATGTTTCCTACAAACAGTGGT 59.579 36.000 13.83 9.17 42.57 4.16
255 256 6.603997 ACAAATGTTTCCTACAAACAGTGGTA 59.396 34.615 6.02 0.00 39.64 3.25
256 257 6.877611 AATGTTTCCTACAAACAGTGGTAG 57.122 37.500 6.13 5.90 42.57 3.18
257 258 5.362105 TGTTTCCTACAAACAGTGGTAGT 57.638 39.130 10.32 0.00 36.17 2.73
258 259 5.747342 TGTTTCCTACAAACAGTGGTAGTT 58.253 37.500 10.32 0.00 36.17 2.24
259 260 6.887013 TGTTTCCTACAAACAGTGGTAGTTA 58.113 36.000 10.32 0.00 36.17 2.24
260 261 7.511268 TGTTTCCTACAAACAGTGGTAGTTAT 58.489 34.615 10.32 0.00 36.17 1.89
261 262 7.658575 TGTTTCCTACAAACAGTGGTAGTTATC 59.341 37.037 10.32 2.42 36.17 1.75
262 263 6.921486 TCCTACAAACAGTGGTAGTTATCA 57.079 37.500 10.32 0.00 36.17 2.15
263 264 6.694447 TCCTACAAACAGTGGTAGTTATCAC 58.306 40.000 10.32 0.00 37.58 3.06
264 265 5.873164 CCTACAAACAGTGGTAGTTATCACC 59.127 44.000 10.32 0.00 38.05 4.02
265 266 5.298989 ACAAACAGTGGTAGTTATCACCA 57.701 39.130 0.00 0.00 43.82 4.17
271 272 2.967362 TGGTAGTTATCACCACTTGCG 58.033 47.619 0.00 0.00 41.17 4.85
272 273 2.300723 TGGTAGTTATCACCACTTGCGT 59.699 45.455 0.00 0.00 41.17 5.24
273 274 3.244284 TGGTAGTTATCACCACTTGCGTT 60.244 43.478 0.00 0.00 41.17 4.84
274 275 3.749609 GGTAGTTATCACCACTTGCGTTT 59.250 43.478 0.00 0.00 36.01 3.60
275 276 4.214758 GGTAGTTATCACCACTTGCGTTTT 59.785 41.667 0.00 0.00 36.01 2.43
276 277 4.223320 AGTTATCACCACTTGCGTTTTG 57.777 40.909 0.00 0.00 0.00 2.44
277 278 3.630312 AGTTATCACCACTTGCGTTTTGT 59.370 39.130 0.00 0.00 0.00 2.83
278 279 4.817464 AGTTATCACCACTTGCGTTTTGTA 59.183 37.500 0.00 0.00 0.00 2.41
279 280 5.472137 AGTTATCACCACTTGCGTTTTGTAT 59.528 36.000 0.00 0.00 0.00 2.29
280 281 3.617540 TCACCACTTGCGTTTTGTATG 57.382 42.857 0.00 0.00 0.00 2.39
281 282 2.946329 TCACCACTTGCGTTTTGTATGT 59.054 40.909 0.00 0.00 0.00 2.29
282 283 3.378742 TCACCACTTGCGTTTTGTATGTT 59.621 39.130 0.00 0.00 0.00 2.71
283 284 3.485378 CACCACTTGCGTTTTGTATGTTG 59.515 43.478 0.00 0.00 0.00 3.33
284 285 3.129638 ACCACTTGCGTTTTGTATGTTGT 59.870 39.130 0.00 0.00 0.00 3.32
285 286 4.335874 ACCACTTGCGTTTTGTATGTTGTA 59.664 37.500 0.00 0.00 0.00 2.41
286 287 5.009210 ACCACTTGCGTTTTGTATGTTGTAT 59.991 36.000 0.00 0.00 0.00 2.29
287 288 5.341993 CCACTTGCGTTTTGTATGTTGTATG 59.658 40.000 0.00 0.00 0.00 2.39
288 289 5.912396 CACTTGCGTTTTGTATGTTGTATGT 59.088 36.000 0.00 0.00 0.00 2.29
289 290 7.072647 CACTTGCGTTTTGTATGTTGTATGTA 58.927 34.615 0.00 0.00 0.00 2.29
290 291 7.268235 CACTTGCGTTTTGTATGTTGTATGTAG 59.732 37.037 0.00 0.00 0.00 2.74
291 292 6.788684 TGCGTTTTGTATGTTGTATGTAGT 57.211 33.333 0.00 0.00 0.00 2.73
292 293 7.886405 TGCGTTTTGTATGTTGTATGTAGTA 57.114 32.000 0.00 0.00 0.00 1.82
293 294 8.481974 TGCGTTTTGTATGTTGTATGTAGTAT 57.518 30.769 0.00 0.00 0.00 2.12
294 295 8.597227 TGCGTTTTGTATGTTGTATGTAGTATC 58.403 33.333 0.00 0.00 0.00 2.24
295 296 8.814235 GCGTTTTGTATGTTGTATGTAGTATCT 58.186 33.333 0.00 0.00 0.00 1.98
299 300 9.511144 TTTGTATGTTGTATGTAGTATCTGTCG 57.489 33.333 0.00 0.00 0.00 4.35
300 301 8.441312 TGTATGTTGTATGTAGTATCTGTCGA 57.559 34.615 0.00 0.00 0.00 4.20
301 302 8.895737 TGTATGTTGTATGTAGTATCTGTCGAA 58.104 33.333 0.00 0.00 0.00 3.71
302 303 9.726232 GTATGTTGTATGTAGTATCTGTCGAAA 57.274 33.333 0.00 0.00 0.00 3.46
305 306 9.946165 TGTTGTATGTAGTATCTGTCGAAATAG 57.054 33.333 0.00 0.00 0.00 1.73
317 318 8.783999 ATCTGTCGAAATAGAAAGTATGTACG 57.216 34.615 0.00 0.00 0.00 3.67
318 319 7.755591 TCTGTCGAAATAGAAAGTATGTACGT 58.244 34.615 0.00 0.00 0.00 3.57
319 320 7.695201 TCTGTCGAAATAGAAAGTATGTACGTG 59.305 37.037 0.00 0.00 0.00 4.49
320 321 7.307694 TGTCGAAATAGAAAGTATGTACGTGT 58.692 34.615 0.00 0.00 0.00 4.49
321 322 8.450180 TGTCGAAATAGAAAGTATGTACGTGTA 58.550 33.333 0.00 0.00 0.00 2.90
322 323 8.941923 GTCGAAATAGAAAGTATGTACGTGTAG 58.058 37.037 0.00 0.00 0.00 2.74
323 324 8.668353 TCGAAATAGAAAGTATGTACGTGTAGT 58.332 33.333 0.00 0.00 0.00 2.73
324 325 9.920826 CGAAATAGAAAGTATGTACGTGTAGTA 57.079 33.333 0.00 0.00 0.00 1.82
330 331 9.388506 AGAAAGTATGTACGTGTAGTATGTAGT 57.611 33.333 0.00 0.00 37.69 2.73
450 451 9.646427 TTCACAAATATAACAAAAACTATGGGC 57.354 29.630 0.00 0.00 0.00 5.36
451 452 9.030452 TCACAAATATAACAAAAACTATGGGCT 57.970 29.630 0.00 0.00 0.00 5.19
452 453 9.301153 CACAAATATAACAAAAACTATGGGCTC 57.699 33.333 0.00 0.00 0.00 4.70
453 454 9.030452 ACAAATATAACAAAAACTATGGGCTCA 57.970 29.630 0.00 0.00 0.00 4.26
458 459 8.766994 ATAACAAAAACTATGGGCTCATATGT 57.233 30.769 6.77 5.33 35.53 2.29
459 460 9.860650 ATAACAAAAACTATGGGCTCATATGTA 57.139 29.630 6.77 0.00 35.53 2.29
460 461 8.588290 AACAAAAACTATGGGCTCATATGTAA 57.412 30.769 6.77 0.00 35.53 2.41
461 462 8.766994 ACAAAAACTATGGGCTCATATGTAAT 57.233 30.769 6.77 0.00 35.53 1.89
462 463 9.200817 ACAAAAACTATGGGCTCATATGTAATT 57.799 29.630 6.77 4.55 35.53 1.40
568 569 9.647918 ACATGGTAGTATATGAGACATATAGGG 57.352 37.037 10.48 1.82 0.00 3.53
569 570 9.868160 CATGGTAGTATATGAGACATATAGGGA 57.132 37.037 10.48 0.03 0.00 4.20
581 582 9.629649 TGAGACATATAGGGAAAATTATAGGGT 57.370 33.333 0.00 0.00 0.00 4.34
607 608 4.313523 CCGGGTGGTAGGATGGAT 57.686 61.111 0.00 0.00 0.00 3.41
608 609 2.539983 CCGGGTGGTAGGATGGATT 58.460 57.895 0.00 0.00 0.00 3.01
609 610 0.843984 CCGGGTGGTAGGATGGATTT 59.156 55.000 0.00 0.00 0.00 2.17
610 611 1.214424 CCGGGTGGTAGGATGGATTTT 59.786 52.381 0.00 0.00 0.00 1.82
611 612 2.572290 CGGGTGGTAGGATGGATTTTC 58.428 52.381 0.00 0.00 0.00 2.29
612 613 2.748465 CGGGTGGTAGGATGGATTTTCC 60.748 54.545 0.00 0.00 36.96 3.13
613 614 2.424379 GGGTGGTAGGATGGATTTTCCC 60.424 54.545 0.00 0.00 35.03 3.97
614 615 2.514160 GGTGGTAGGATGGATTTTCCCT 59.486 50.000 0.00 0.00 35.03 4.20
615 616 3.720002 GGTGGTAGGATGGATTTTCCCTA 59.280 47.826 0.00 0.00 35.03 3.53
616 617 4.354087 GGTGGTAGGATGGATTTTCCCTAT 59.646 45.833 0.00 0.00 35.03 2.57
617 618 5.316987 GTGGTAGGATGGATTTTCCCTATG 58.683 45.833 0.00 0.00 35.03 2.23
618 619 4.981647 TGGTAGGATGGATTTTCCCTATGT 59.018 41.667 0.00 0.00 35.03 2.29
619 620 5.163099 TGGTAGGATGGATTTTCCCTATGTG 60.163 44.000 0.00 0.00 35.03 3.21
620 621 5.163088 GGTAGGATGGATTTTCCCTATGTGT 60.163 44.000 0.00 0.00 35.03 3.72
621 622 4.796606 AGGATGGATTTTCCCTATGTGTG 58.203 43.478 0.00 0.00 35.03 3.82
622 623 4.230502 AGGATGGATTTTCCCTATGTGTGT 59.769 41.667 0.00 0.00 35.03 3.72
623 624 4.339247 GGATGGATTTTCCCTATGTGTGTG 59.661 45.833 0.00 0.00 35.03 3.82
624 625 4.380843 TGGATTTTCCCTATGTGTGTGT 57.619 40.909 0.00 0.00 35.03 3.72
625 626 4.078537 TGGATTTTCCCTATGTGTGTGTG 58.921 43.478 0.00 0.00 35.03 3.82
626 627 4.079253 GGATTTTCCCTATGTGTGTGTGT 58.921 43.478 0.00 0.00 0.00 3.72
627 628 4.082787 GGATTTTCCCTATGTGTGTGTGTG 60.083 45.833 0.00 0.00 0.00 3.82
628 629 3.569194 TTTCCCTATGTGTGTGTGTGT 57.431 42.857 0.00 0.00 0.00 3.72
629 630 2.542020 TCCCTATGTGTGTGTGTGTG 57.458 50.000 0.00 0.00 0.00 3.82
649 650 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
667 668 6.092748 GTGTGTGGTTCCATCAAAACATATC 58.907 40.000 0.00 0.00 0.00 1.63
668 669 6.009589 TGTGTGGTTCCATCAAAACATATCT 58.990 36.000 0.00 0.00 0.00 1.98
669 670 7.120579 GTGTGTGGTTCCATCAAAACATATCTA 59.879 37.037 0.00 0.00 0.00 1.98
670 671 7.833682 TGTGTGGTTCCATCAAAACATATCTAT 59.166 33.333 0.00 0.00 0.00 1.98
671 672 9.337396 GTGTGGTTCCATCAAAACATATCTATA 57.663 33.333 0.00 0.00 0.00 1.31
704 705 5.236263 TGACAATATATCAATGTCGTGCCAC 59.764 40.000 10.14 0.00 44.95 5.01
802 808 8.592105 AATAATGTTGTGCCATTTATGCATAC 57.408 30.769 5.74 0.00 41.46 2.39
861 868 7.500720 TGATGAGGTCATTAATGTGCAATAG 57.499 36.000 14.97 0.00 36.57 1.73
864 871 7.701539 TGAGGTCATTAATGTGCAATAGTTT 57.298 32.000 14.97 0.00 0.00 2.66
876 883 9.956720 AATGTGCAATAGTTTTCATTAGATAGC 57.043 29.630 0.00 0.00 0.00 2.97
880 887 8.122330 TGCAATAGTTTTCATTAGATAGCAACG 58.878 33.333 0.00 0.00 0.00 4.10
963 970 2.614057 ACGGTGCTTGAGTTTCTTTCTG 59.386 45.455 0.00 0.00 0.00 3.02
973 980 5.126067 TGAGTTTCTTTCTGGAGGAAACAG 58.874 41.667 21.38 0.00 46.26 3.16
997 1004 7.012327 CAGAAACAGTAGAGTCCAATTGTTCAA 59.988 37.037 4.43 0.00 0.00 2.69
1092 1099 4.772624 GCCAAGGAAAATAGAAAAGGAGGT 59.227 41.667 0.00 0.00 0.00 3.85
1117 1124 3.288099 AATGGAGGAAAGCGCCATT 57.712 47.368 2.29 1.30 45.08 3.16
1440 1447 6.959639 TCCATGCTTTTCTTACCCAATATC 57.040 37.500 0.00 0.00 0.00 1.63
1452 1459 3.891049 ACCCAATATCCAGTCTTGCTTC 58.109 45.455 0.00 0.00 0.00 3.86
1473 1480 7.913297 TGCTTCGGTAATAAACAATAGATTTGC 59.087 33.333 0.00 0.00 0.00 3.68
1739 1746 4.842531 TCCAATATGGAGAAGTGAGCAA 57.157 40.909 0.00 0.00 42.67 3.91
2106 2214 6.516718 TCTGATCGATATGAAGTCCCTTTTC 58.483 40.000 0.00 0.00 0.00 2.29
2111 2219 5.050490 CGATATGAAGTCCCTTTTCGTCAT 58.950 41.667 0.00 0.00 36.88 3.06
2155 2269 2.070783 GTCCCGAATTACTTGTCGCAA 58.929 47.619 0.00 0.00 35.93 4.85
2228 2342 7.651304 ACATTCATTTTTGCGACAAGTAATTCA 59.349 29.630 0.00 0.00 0.00 2.57
2271 2385 1.092348 CTCACTCACCCATGCATGTG 58.908 55.000 24.58 16.74 0.00 3.21
2489 2603 3.770263 CATACCAATGCTGTTGGAGTG 57.230 47.619 22.77 16.83 42.06 3.51
2494 2608 0.178953 AATGCTGTTGGAGTGGGCTT 60.179 50.000 0.00 0.00 0.00 4.35
2942 3082 3.808728 ACGTGCATGCAAACTATATCCT 58.191 40.909 24.58 0.00 0.00 3.24
2969 3109 9.720769 TCTTCTTAAGTTTTACAGTAAGGATGG 57.279 33.333 1.63 0.00 0.00 3.51
3334 3477 4.677673 ATGCTTTGATCTAAAATGCCCC 57.322 40.909 0.00 0.00 0.00 5.80
3424 3567 3.012518 GCCACAAGCTCATATGAACACT 58.987 45.455 6.90 2.00 38.99 3.55
3468 3611 9.810870 AATTTTACCCACAGTATAAACAACCTA 57.189 29.630 0.00 0.00 0.00 3.08
3469 3612 8.620116 TTTTACCCACAGTATAAACAACCTAC 57.380 34.615 0.00 0.00 0.00 3.18
3471 3614 8.663209 TTACCCACAGTATAAACAACCTACTA 57.337 34.615 0.00 0.00 0.00 1.82
3474 3617 6.990349 CCCACAGTATAAACAACCTACTATGG 59.010 42.308 0.35 0.35 35.67 2.74
3591 3770 8.435982 TCCCCTTTTGTTGATATTTTTGTTGAT 58.564 29.630 0.00 0.00 0.00 2.57
3605 3784 8.679288 ATTTTTGTTGATTTTCTCTCATAGCG 57.321 30.769 0.00 0.00 0.00 4.26
3721 3901 6.293407 GCAGTGACACGTGCCAATATAATTAT 60.293 38.462 17.22 2.97 33.29 1.28
3723 3903 6.989759 AGTGACACGTGCCAATATAATTATCA 59.010 34.615 17.22 3.91 0.00 2.15
3807 3988 0.743345 GATACCAGTGTTCCCCGTGC 60.743 60.000 0.00 0.00 0.00 5.34
3837 4018 3.427773 CCTTCAGCACGTAGTTACCTCTC 60.428 52.174 0.00 0.00 41.61 3.20
4067 4263 2.228582 CACACACACAGAGAGAGAGAGG 59.771 54.545 0.00 0.00 0.00 3.69
4177 4416 7.832187 TCCTAGAATCATTTATTTTTCCGTGGT 59.168 33.333 0.00 0.00 0.00 4.16
4257 4496 5.009710 TCGGTTGTGCAATTACATGGTTTTA 59.990 36.000 0.00 0.00 0.00 1.52
4299 4538 7.872113 ATAAAGCTCAATTTACTGAGGGAAG 57.128 36.000 3.00 0.00 42.68 3.46
4373 4613 0.400213 TCTTGCCCCAACATTCTCGT 59.600 50.000 0.00 0.00 0.00 4.18
4407 4647 9.740239 TCTAATATATATTAACGGCGGTCAATC 57.260 33.333 13.24 0.00 0.00 2.67
4451 4701 5.067273 CAGTACCAATACTTTTGTCACCCA 58.933 41.667 0.00 0.00 39.80 4.51
4463 4713 3.126001 TGTCACCCACTCTTCAACATC 57.874 47.619 0.00 0.00 0.00 3.06
4536 4814 3.564053 TGTTTAACTTCTCGGGTTGGT 57.436 42.857 0.00 0.00 0.00 3.67
4587 4865 1.472480 CTGGTGGGTAAAATTCGGCAG 59.528 52.381 0.00 0.00 0.00 4.85
4636 4914 3.508793 CAGGTGAACTCTTCGGTTACCTA 59.491 47.826 0.00 0.00 34.59 3.08
4789 5067 8.118976 ACATCAAAATTGTGACAAGAGATCAT 57.881 30.769 0.00 0.00 0.00 2.45
4876 5154 4.025040 TGCTCACAAATCAGACCAAGAT 57.975 40.909 0.00 0.00 0.00 2.40
4936 5214 4.343526 TGCACCCTTTGAATGTAACAACAT 59.656 37.500 0.00 0.00 0.00 2.71
4937 5215 5.163364 TGCACCCTTTGAATGTAACAACATT 60.163 36.000 3.52 3.52 42.39 2.71
4938 5216 5.757808 GCACCCTTTGAATGTAACAACATTT 59.242 36.000 5.32 0.00 40.08 2.32
4939 5217 6.292811 GCACCCTTTGAATGTAACAACATTTG 60.293 38.462 5.32 0.29 40.08 2.32
4940 5218 6.983307 CACCCTTTGAATGTAACAACATTTGA 59.017 34.615 5.32 0.00 40.08 2.69
4941 5219 7.493971 CACCCTTTGAATGTAACAACATTTGAA 59.506 33.333 5.32 3.63 40.08 2.69
4942 5220 8.043710 ACCCTTTGAATGTAACAACATTTGAAA 58.956 29.630 5.32 7.03 40.08 2.69
5049 5328 4.887071 TGAGTATTGCCTCAGTTTGTGTTT 59.113 37.500 0.00 0.00 36.57 2.83
5073 5353 2.865079 TCGGCTAATGTTTGGGTTCAA 58.135 42.857 0.00 0.00 0.00 2.69
5142 5422 5.723492 TGCGATCTAGAACATGTCAATTG 57.277 39.130 0.00 0.00 0.00 2.32
5309 5597 2.167398 ATCTTGTACGCCACGGCAGT 62.167 55.000 9.11 9.50 42.06 4.40
5391 5683 5.458595 TCCATCTGACATGGTATACAGAGT 58.541 41.667 5.01 0.00 41.55 3.24
5396 5688 6.129179 TCTGACATGGTATACAGAGTCATCA 58.871 40.000 17.97 9.53 43.02 3.07
5508 5846 1.609501 CCGGTCTCCCTCAACCTCA 60.610 63.158 0.00 0.00 33.14 3.86
5579 5917 0.035152 CACAAGTGATGCCAGGCCTA 60.035 55.000 3.98 0.00 0.00 3.93
5613 5951 3.866582 CCGGCCTCCTGGATGGAC 61.867 72.222 14.12 10.99 40.56 4.02
5844 6184 2.159184 GCAGTCTCAATCTCGGATCACA 60.159 50.000 0.00 0.00 0.00 3.58
5900 6249 3.539604 GCTCTATGTCAAGCACCTCATT 58.460 45.455 0.00 0.00 38.42 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 9.018582 GGATGAATAGGCTTATGCTAAAGAAAT 57.981 33.333 0.00 0.00 39.59 2.17
13 14 7.448469 GGGATGAATAGGCTTATGCTAAAGAAA 59.552 37.037 0.00 0.00 39.59 2.52
14 15 6.942576 GGGATGAATAGGCTTATGCTAAAGAA 59.057 38.462 0.00 0.00 39.59 2.52
15 16 6.273260 AGGGATGAATAGGCTTATGCTAAAGA 59.727 38.462 0.00 0.00 39.59 2.52
16 17 6.479884 AGGGATGAATAGGCTTATGCTAAAG 58.520 40.000 0.00 0.00 39.59 1.85
17 18 6.454223 AGGGATGAATAGGCTTATGCTAAA 57.546 37.500 0.00 0.00 39.59 1.85
18 19 6.454223 AAGGGATGAATAGGCTTATGCTAA 57.546 37.500 0.00 0.00 39.59 3.09
19 20 5.045578 GGAAGGGATGAATAGGCTTATGCTA 60.046 44.000 0.00 0.00 39.59 3.49
20 21 4.263683 GGAAGGGATGAATAGGCTTATGCT 60.264 45.833 0.00 0.00 39.59 3.79
21 22 4.013050 GGAAGGGATGAATAGGCTTATGC 58.987 47.826 0.00 0.00 38.76 3.14
22 23 4.256920 CGGAAGGGATGAATAGGCTTATG 58.743 47.826 0.00 0.00 0.00 1.90
23 24 4.559862 CGGAAGGGATGAATAGGCTTAT 57.440 45.455 0.00 0.00 0.00 1.73
25 26 2.938956 CGGAAGGGATGAATAGGCTT 57.061 50.000 0.00 0.00 0.00 4.35
45 46 0.106894 GAAGGATCGGGGTGATGACC 59.893 60.000 0.00 0.00 42.27 4.02
46 47 0.830648 TGAAGGATCGGGGTGATGAC 59.169 55.000 0.00 0.00 37.47 3.06
47 48 1.123077 CTGAAGGATCGGGGTGATGA 58.877 55.000 0.00 0.00 37.47 2.92
48 49 0.833287 ACTGAAGGATCGGGGTGATG 59.167 55.000 0.00 0.00 37.47 3.07
49 50 1.210478 CAACTGAAGGATCGGGGTGAT 59.790 52.381 0.00 0.00 41.06 3.06
50 51 0.613260 CAACTGAAGGATCGGGGTGA 59.387 55.000 0.00 0.00 36.16 4.02
51 52 0.392998 CCAACTGAAGGATCGGGGTG 60.393 60.000 0.00 0.00 36.16 4.61
52 53 0.840722 ACCAACTGAAGGATCGGGGT 60.841 55.000 0.00 0.00 36.16 4.95
53 54 0.107654 GACCAACTGAAGGATCGGGG 60.108 60.000 0.00 0.00 36.16 5.73
54 55 0.613260 TGACCAACTGAAGGATCGGG 59.387 55.000 0.00 0.00 36.16 5.14
55 56 2.289694 ACTTGACCAACTGAAGGATCGG 60.290 50.000 0.00 0.00 37.98 4.18
56 57 3.045601 ACTTGACCAACTGAAGGATCG 57.954 47.619 0.00 0.00 0.00 3.69
57 58 5.066593 AGAAACTTGACCAACTGAAGGATC 58.933 41.667 0.00 0.00 0.00 3.36
58 59 5.053978 AGAAACTTGACCAACTGAAGGAT 57.946 39.130 0.00 0.00 0.00 3.24
59 60 4.503714 AGAAACTTGACCAACTGAAGGA 57.496 40.909 0.00 0.00 0.00 3.36
60 61 4.734695 GCAAGAAACTTGACCAACTGAAGG 60.735 45.833 14.44 0.00 0.00 3.46
61 62 4.096984 AGCAAGAAACTTGACCAACTGAAG 59.903 41.667 14.44 0.00 0.00 3.02
62 63 4.016444 AGCAAGAAACTTGACCAACTGAA 58.984 39.130 14.44 0.00 0.00 3.02
63 64 3.620488 AGCAAGAAACTTGACCAACTGA 58.380 40.909 14.44 0.00 0.00 3.41
64 65 5.471456 AGATAGCAAGAAACTTGACCAACTG 59.529 40.000 14.44 0.00 0.00 3.16
65 66 5.625150 AGATAGCAAGAAACTTGACCAACT 58.375 37.500 14.44 5.15 0.00 3.16
66 67 5.470098 TGAGATAGCAAGAAACTTGACCAAC 59.530 40.000 14.44 0.00 0.00 3.77
67 68 5.620206 TGAGATAGCAAGAAACTTGACCAA 58.380 37.500 14.44 0.00 0.00 3.67
68 69 5.227569 TGAGATAGCAAGAAACTTGACCA 57.772 39.130 14.44 0.47 0.00 4.02
69 70 6.560253 TTTGAGATAGCAAGAAACTTGACC 57.440 37.500 14.44 0.00 0.00 4.02
70 71 8.909671 CATTTTTGAGATAGCAAGAAACTTGAC 58.090 33.333 14.44 6.72 0.00 3.18
71 72 8.632679 ACATTTTTGAGATAGCAAGAAACTTGA 58.367 29.630 14.44 0.00 0.00 3.02
72 73 8.807667 ACATTTTTGAGATAGCAAGAAACTTG 57.192 30.769 7.07 7.07 0.00 3.16
103 104 8.820933 CGTGAATGTGTATCATGTCTTCTATTT 58.179 33.333 0.00 0.00 36.81 1.40
104 105 8.197439 TCGTGAATGTGTATCATGTCTTCTATT 58.803 33.333 0.00 0.00 36.81 1.73
105 106 7.716612 TCGTGAATGTGTATCATGTCTTCTAT 58.283 34.615 0.00 0.00 36.81 1.98
106 107 7.095695 TCGTGAATGTGTATCATGTCTTCTA 57.904 36.000 0.00 0.00 36.81 2.10
107 108 5.965922 TCGTGAATGTGTATCATGTCTTCT 58.034 37.500 0.00 0.00 36.81 2.85
108 109 5.276584 GCTCGTGAATGTGTATCATGTCTTC 60.277 44.000 0.00 0.00 36.81 2.87
109 110 4.568359 GCTCGTGAATGTGTATCATGTCTT 59.432 41.667 0.00 0.00 36.81 3.01
110 111 4.115516 GCTCGTGAATGTGTATCATGTCT 58.884 43.478 0.00 0.00 36.81 3.41
111 112 3.865164 TGCTCGTGAATGTGTATCATGTC 59.135 43.478 0.00 0.00 36.81 3.06
112 113 3.618594 GTGCTCGTGAATGTGTATCATGT 59.381 43.478 0.00 0.00 36.81 3.21
113 114 3.618150 TGTGCTCGTGAATGTGTATCATG 59.382 43.478 0.00 0.00 36.81 3.07
114 115 3.860641 TGTGCTCGTGAATGTGTATCAT 58.139 40.909 0.00 0.00 38.57 2.45
115 116 3.311486 TGTGCTCGTGAATGTGTATCA 57.689 42.857 0.00 0.00 0.00 2.15
116 117 3.865164 TCATGTGCTCGTGAATGTGTATC 59.135 43.478 8.19 0.00 36.76 2.24
117 118 3.860641 TCATGTGCTCGTGAATGTGTAT 58.139 40.909 8.19 0.00 36.76 2.29
118 119 3.056891 TCTCATGTGCTCGTGAATGTGTA 60.057 43.478 11.54 0.00 38.84 2.90
119 120 2.071540 CTCATGTGCTCGTGAATGTGT 58.928 47.619 11.54 0.00 38.84 3.72
120 121 2.340337 TCTCATGTGCTCGTGAATGTG 58.660 47.619 11.54 1.22 38.84 3.21
121 122 2.749280 TCTCATGTGCTCGTGAATGT 57.251 45.000 11.54 0.00 38.84 2.71
122 123 4.331992 AGAATTCTCATGTGCTCGTGAATG 59.668 41.667 11.54 2.19 38.84 2.67
123 124 4.511527 AGAATTCTCATGTGCTCGTGAAT 58.488 39.130 11.54 1.44 38.84 2.57
124 125 3.930336 AGAATTCTCATGTGCTCGTGAA 58.070 40.909 11.54 0.00 38.84 3.18
125 126 3.599730 AGAATTCTCATGTGCTCGTGA 57.400 42.857 0.88 10.11 37.89 4.35
126 127 3.434641 ACAAGAATTCTCATGTGCTCGTG 59.565 43.478 8.78 1.73 32.38 4.35
127 128 3.434641 CACAAGAATTCTCATGTGCTCGT 59.565 43.478 21.44 0.00 42.47 4.18
128 129 3.181513 CCACAAGAATTCTCATGTGCTCG 60.182 47.826 25.32 14.02 45.65 5.03
129 130 3.128242 CCCACAAGAATTCTCATGTGCTC 59.872 47.826 25.32 0.00 45.65 4.26
130 131 3.087031 CCCACAAGAATTCTCATGTGCT 58.913 45.455 25.32 1.89 45.65 4.40
131 132 2.821969 ACCCACAAGAATTCTCATGTGC 59.178 45.455 25.32 0.00 45.65 4.57
132 133 4.074259 TGACCCACAAGAATTCTCATGTG 58.926 43.478 24.36 24.36 46.25 3.21
133 134 4.371624 TGACCCACAAGAATTCTCATGT 57.628 40.909 8.78 7.71 33.83 3.21
134 135 5.909621 AATGACCCACAAGAATTCTCATG 57.090 39.130 8.78 9.89 0.00 3.07
135 136 9.872684 ATATTAATGACCCACAAGAATTCTCAT 57.127 29.630 8.78 3.44 0.00 2.90
136 137 9.123902 CATATTAATGACCCACAAGAATTCTCA 57.876 33.333 8.78 0.92 34.84 3.27
137 138 9.125026 ACATATTAATGACCCACAAGAATTCTC 57.875 33.333 8.78 0.00 36.54 2.87
202 203 9.913310 CTCTCTCTCTCTCTCTCTCTCTATATA 57.087 40.741 0.00 0.00 0.00 0.86
203 204 7.838696 CCTCTCTCTCTCTCTCTCTCTCTATAT 59.161 44.444 0.00 0.00 0.00 0.86
204 205 7.018650 TCCTCTCTCTCTCTCTCTCTCTCTATA 59.981 44.444 0.00 0.00 0.00 1.31
205 206 6.015918 CCTCTCTCTCTCTCTCTCTCTCTAT 58.984 48.000 0.00 0.00 0.00 1.98
206 207 5.134509 TCCTCTCTCTCTCTCTCTCTCTCTA 59.865 48.000 0.00 0.00 0.00 2.43
207 208 4.078922 TCCTCTCTCTCTCTCTCTCTCTCT 60.079 50.000 0.00 0.00 0.00 3.10
208 209 4.038642 GTCCTCTCTCTCTCTCTCTCTCTC 59.961 54.167 0.00 0.00 0.00 3.20
209 210 3.964031 GTCCTCTCTCTCTCTCTCTCTCT 59.036 52.174 0.00 0.00 0.00 3.10
210 211 3.706594 TGTCCTCTCTCTCTCTCTCTCTC 59.293 52.174 0.00 0.00 0.00 3.20
211 212 3.724478 TGTCCTCTCTCTCTCTCTCTCT 58.276 50.000 0.00 0.00 0.00 3.10
212 213 4.487714 TTGTCCTCTCTCTCTCTCTCTC 57.512 50.000 0.00 0.00 0.00 3.20
213 214 4.927267 TTTGTCCTCTCTCTCTCTCTCT 57.073 45.455 0.00 0.00 0.00 3.10
214 215 4.949856 ACATTTGTCCTCTCTCTCTCTCTC 59.050 45.833 0.00 0.00 0.00 3.20
215 216 4.934356 ACATTTGTCCTCTCTCTCTCTCT 58.066 43.478 0.00 0.00 0.00 3.10
216 217 5.659440 AACATTTGTCCTCTCTCTCTCTC 57.341 43.478 0.00 0.00 0.00 3.20
217 218 5.046663 GGAAACATTTGTCCTCTCTCTCTCT 60.047 44.000 0.00 0.00 0.00 3.10
218 219 5.046663 AGGAAACATTTGTCCTCTCTCTCTC 60.047 44.000 0.00 0.00 40.38 3.20
219 220 4.843516 AGGAAACATTTGTCCTCTCTCTCT 59.156 41.667 0.00 0.00 40.38 3.10
220 221 5.159273 AGGAAACATTTGTCCTCTCTCTC 57.841 43.478 0.00 0.00 40.38 3.20
221 222 5.544176 TGTAGGAAACATTTGTCCTCTCTCT 59.456 40.000 0.00 0.00 43.44 3.10
222 223 5.794894 TGTAGGAAACATTTGTCCTCTCTC 58.205 41.667 0.00 0.00 43.44 3.20
223 224 5.825593 TGTAGGAAACATTTGTCCTCTCT 57.174 39.130 0.00 0.00 43.44 3.10
224 225 6.262273 TGTTTGTAGGAAACATTTGTCCTCTC 59.738 38.462 0.00 0.00 43.44 3.20
225 226 6.126409 TGTTTGTAGGAAACATTTGTCCTCT 58.874 36.000 0.00 0.00 43.44 3.69
226 227 6.039382 ACTGTTTGTAGGAAACATTTGTCCTC 59.961 38.462 0.00 0.00 43.44 3.71
227 228 5.891551 ACTGTTTGTAGGAAACATTTGTCCT 59.108 36.000 0.00 0.00 46.29 3.85
228 229 5.977129 CACTGTTTGTAGGAAACATTTGTCC 59.023 40.000 0.00 0.00 39.16 4.02
229 230 5.977129 CCACTGTTTGTAGGAAACATTTGTC 59.023 40.000 0.00 0.00 39.16 3.18
230 231 5.420739 ACCACTGTTTGTAGGAAACATTTGT 59.579 36.000 0.00 0.00 39.16 2.83
231 232 5.901552 ACCACTGTTTGTAGGAAACATTTG 58.098 37.500 0.00 0.00 39.16 2.32
232 233 6.831868 ACTACCACTGTTTGTAGGAAACATTT 59.168 34.615 15.05 0.00 39.16 2.32
233 234 6.362248 ACTACCACTGTTTGTAGGAAACATT 58.638 36.000 15.05 0.00 39.16 2.71
234 235 5.937111 ACTACCACTGTTTGTAGGAAACAT 58.063 37.500 15.05 0.00 39.16 2.71
235 236 5.362105 ACTACCACTGTTTGTAGGAAACA 57.638 39.130 15.05 0.00 38.98 2.83
236 237 7.658575 TGATAACTACCACTGTTTGTAGGAAAC 59.341 37.037 15.05 0.00 38.98 2.78
237 238 7.658575 GTGATAACTACCACTGTTTGTAGGAAA 59.341 37.037 15.05 4.60 38.98 3.13
238 239 7.156673 GTGATAACTACCACTGTTTGTAGGAA 58.843 38.462 15.05 6.36 38.98 3.36
239 240 6.295462 GGTGATAACTACCACTGTTTGTAGGA 60.295 42.308 15.05 6.47 38.98 2.94
240 241 5.873164 GGTGATAACTACCACTGTTTGTAGG 59.127 44.000 15.05 0.49 38.98 3.18
241 242 6.460781 TGGTGATAACTACCACTGTTTGTAG 58.539 40.000 10.97 10.97 43.00 2.74
242 243 6.422344 TGGTGATAACTACCACTGTTTGTA 57.578 37.500 0.00 0.00 43.00 2.41
243 244 5.298989 TGGTGATAACTACCACTGTTTGT 57.701 39.130 0.00 0.00 43.00 2.83
251 252 2.967362 CGCAAGTGGTGATAACTACCA 58.033 47.619 0.00 0.00 45.52 3.25
267 268 7.192148 ACTACATACAACATACAAAACGCAA 57.808 32.000 0.00 0.00 0.00 4.85
268 269 6.788684 ACTACATACAACATACAAAACGCA 57.211 33.333 0.00 0.00 0.00 5.24
269 270 8.814235 AGATACTACATACAACATACAAAACGC 58.186 33.333 0.00 0.00 0.00 4.84
273 274 9.511144 CGACAGATACTACATACAACATACAAA 57.489 33.333 0.00 0.00 0.00 2.83
274 275 8.895737 TCGACAGATACTACATACAACATACAA 58.104 33.333 0.00 0.00 0.00 2.41
275 276 8.441312 TCGACAGATACTACATACAACATACA 57.559 34.615 0.00 0.00 0.00 2.29
276 277 9.726232 TTTCGACAGATACTACATACAACATAC 57.274 33.333 0.00 0.00 0.00 2.39
279 280 9.946165 CTATTTCGACAGATACTACATACAACA 57.054 33.333 0.00 0.00 0.00 3.33
291 292 9.874215 CGTACATACTTTCTATTTCGACAGATA 57.126 33.333 0.00 0.00 0.00 1.98
292 293 8.404000 ACGTACATACTTTCTATTTCGACAGAT 58.596 33.333 0.00 0.00 0.00 2.90
293 294 7.695201 CACGTACATACTTTCTATTTCGACAGA 59.305 37.037 0.00 0.00 0.00 3.41
294 295 7.484007 ACACGTACATACTTTCTATTTCGACAG 59.516 37.037 0.00 0.00 0.00 3.51
295 296 7.307694 ACACGTACATACTTTCTATTTCGACA 58.692 34.615 0.00 0.00 0.00 4.35
296 297 7.731556 ACACGTACATACTTTCTATTTCGAC 57.268 36.000 0.00 0.00 0.00 4.20
297 298 8.668353 ACTACACGTACATACTTTCTATTTCGA 58.332 33.333 0.00 0.00 0.00 3.71
298 299 8.832487 ACTACACGTACATACTTTCTATTTCG 57.168 34.615 0.00 0.00 0.00 3.46
304 305 9.388506 ACTACATACTACACGTACATACTTTCT 57.611 33.333 0.00 0.00 0.00 2.52
424 425 9.646427 GCCCATAGTTTTTGTTATATTTGTGAA 57.354 29.630 0.00 0.00 0.00 3.18
425 426 9.030452 AGCCCATAGTTTTTGTTATATTTGTGA 57.970 29.630 0.00 0.00 0.00 3.58
426 427 9.301153 GAGCCCATAGTTTTTGTTATATTTGTG 57.699 33.333 0.00 0.00 0.00 3.33
427 428 9.030452 TGAGCCCATAGTTTTTGTTATATTTGT 57.970 29.630 0.00 0.00 0.00 2.83
432 433 9.860650 ACATATGAGCCCATAGTTTTTGTTATA 57.139 29.630 10.38 0.00 38.53 0.98
433 434 8.766994 ACATATGAGCCCATAGTTTTTGTTAT 57.233 30.769 10.38 0.00 38.53 1.89
434 435 9.688091 TTACATATGAGCCCATAGTTTTTGTTA 57.312 29.630 10.38 0.00 38.53 2.41
435 436 8.588290 TTACATATGAGCCCATAGTTTTTGTT 57.412 30.769 10.38 0.00 38.53 2.83
436 437 8.766994 ATTACATATGAGCCCATAGTTTTTGT 57.233 30.769 10.38 0.00 38.53 2.83
542 543 9.647918 CCCTATATGTCTCATATACTACCATGT 57.352 37.037 5.65 0.00 0.00 3.21
543 544 9.868160 TCCCTATATGTCTCATATACTACCATG 57.132 37.037 5.65 0.00 0.00 3.66
555 556 9.629649 ACCCTATAATTTTCCCTATATGTCTCA 57.370 33.333 0.00 0.00 0.00 3.27
563 564 9.693327 TGGTAGTTACCCTATAATTTTCCCTAT 57.307 33.333 5.90 0.00 45.87 2.57
564 565 8.937835 GTGGTAGTTACCCTATAATTTTCCCTA 58.062 37.037 5.90 0.00 45.87 3.53
565 566 7.147248 GGTGGTAGTTACCCTATAATTTTCCCT 60.147 40.741 5.90 0.00 45.87 4.20
566 567 7.000472 GGTGGTAGTTACCCTATAATTTTCCC 59.000 42.308 5.90 0.00 45.87 3.97
567 568 6.707608 CGGTGGTAGTTACCCTATAATTTTCC 59.292 42.308 5.90 0.00 45.87 3.13
568 569 6.707608 CCGGTGGTAGTTACCCTATAATTTTC 59.292 42.308 5.90 0.00 45.87 2.29
569 570 6.409579 CCCGGTGGTAGTTACCCTATAATTTT 60.410 42.308 0.00 0.00 45.87 1.82
570 571 5.072193 CCCGGTGGTAGTTACCCTATAATTT 59.928 44.000 0.00 0.00 45.87 1.82
571 572 4.594491 CCCGGTGGTAGTTACCCTATAATT 59.406 45.833 0.00 0.00 45.87 1.40
572 573 4.162651 CCCGGTGGTAGTTACCCTATAAT 58.837 47.826 0.00 0.00 45.87 1.28
573 574 3.052186 ACCCGGTGGTAGTTACCCTATAA 60.052 47.826 0.00 0.00 45.45 0.98
574 575 2.517980 ACCCGGTGGTAGTTACCCTATA 59.482 50.000 0.00 0.00 45.45 1.31
575 576 1.291939 ACCCGGTGGTAGTTACCCTAT 59.708 52.381 0.00 0.00 45.45 2.57
576 577 0.709992 ACCCGGTGGTAGTTACCCTA 59.290 55.000 0.00 0.00 45.45 3.53
577 578 0.906282 CACCCGGTGGTAGTTACCCT 60.906 60.000 9.99 0.00 45.57 4.34
578 579 1.598517 CACCCGGTGGTAGTTACCC 59.401 63.158 9.99 0.00 45.57 3.69
590 591 0.843984 AAATCCATCCTACCACCCGG 59.156 55.000 0.00 0.00 38.77 5.73
591 592 2.572290 GAAAATCCATCCTACCACCCG 58.428 52.381 0.00 0.00 0.00 5.28
592 593 2.424379 GGGAAAATCCATCCTACCACCC 60.424 54.545 0.00 0.00 38.64 4.61
593 594 2.514160 AGGGAAAATCCATCCTACCACC 59.486 50.000 0.00 0.00 38.64 4.61
594 595 3.953542 AGGGAAAATCCATCCTACCAC 57.046 47.619 0.00 0.00 38.64 4.16
595 596 4.981647 ACATAGGGAAAATCCATCCTACCA 59.018 41.667 0.00 0.00 38.64 3.25
596 597 5.163088 ACACATAGGGAAAATCCATCCTACC 60.163 44.000 0.00 0.00 38.64 3.18
597 598 5.765182 CACACATAGGGAAAATCCATCCTAC 59.235 44.000 0.00 0.00 38.64 3.18
598 599 5.431731 ACACACATAGGGAAAATCCATCCTA 59.568 40.000 0.00 0.00 38.64 2.94
599 600 4.230502 ACACACATAGGGAAAATCCATCCT 59.769 41.667 0.00 0.00 38.64 3.24
600 601 4.339247 CACACACATAGGGAAAATCCATCC 59.661 45.833 0.00 0.00 38.64 3.51
601 602 4.949856 ACACACACATAGGGAAAATCCATC 59.050 41.667 0.00 0.00 38.64 3.51
602 603 4.706476 CACACACACATAGGGAAAATCCAT 59.294 41.667 0.00 0.00 38.64 3.41
603 604 4.078537 CACACACACATAGGGAAAATCCA 58.921 43.478 0.00 0.00 38.64 3.41
604 605 4.079253 ACACACACACATAGGGAAAATCC 58.921 43.478 0.00 0.00 35.23 3.01
605 606 4.518970 ACACACACACACATAGGGAAAATC 59.481 41.667 0.00 0.00 0.00 2.17
606 607 4.278170 CACACACACACACATAGGGAAAAT 59.722 41.667 0.00 0.00 0.00 1.82
607 608 3.629855 CACACACACACACATAGGGAAAA 59.370 43.478 0.00 0.00 0.00 2.29
608 609 3.210227 CACACACACACACATAGGGAAA 58.790 45.455 0.00 0.00 0.00 3.13
609 610 2.171659 ACACACACACACACATAGGGAA 59.828 45.455 0.00 0.00 0.00 3.97
610 611 1.765904 ACACACACACACACATAGGGA 59.234 47.619 0.00 0.00 0.00 4.20
611 612 1.872952 CACACACACACACACATAGGG 59.127 52.381 0.00 0.00 0.00 3.53
612 613 2.287644 CACACACACACACACACATAGG 59.712 50.000 0.00 0.00 0.00 2.57
613 614 2.935849 ACACACACACACACACACATAG 59.064 45.455 0.00 0.00 0.00 2.23
614 615 2.675348 CACACACACACACACACACATA 59.325 45.455 0.00 0.00 0.00 2.29
615 616 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
616 617 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
617 618 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
618 619 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
619 620 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
620 621 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
621 622 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
622 623 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
623 624 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
624 625 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
625 626 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
626 627 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
627 628 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
628 629 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
629 630 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
861 868 6.837992 TGTTCCGTTGCTATCTAATGAAAAC 58.162 36.000 0.00 0.00 0.00 2.43
864 871 7.047891 AGAATGTTCCGTTGCTATCTAATGAA 58.952 34.615 0.00 0.00 0.00 2.57
876 883 7.138736 ACACAAAAATCTAGAATGTTCCGTTG 58.861 34.615 0.00 0.00 0.00 4.10
880 887 9.178758 AGGATACACAAAAATCTAGAATGTTCC 57.821 33.333 0.00 4.84 41.41 3.62
963 970 5.216614 ACTCTACTGTTTCTGTTTCCTCC 57.783 43.478 0.00 0.00 0.00 4.30
973 980 6.861065 TGAACAATTGGACTCTACTGTTTC 57.139 37.500 10.83 0.62 0.00 2.78
979 986 9.528018 TTTCATTTTTGAACAATTGGACTCTAC 57.472 29.630 10.83 0.00 0.00 2.59
997 1004 5.799827 TGTTCCCCGAGAATTTTCATTTT 57.200 34.783 0.00 0.00 36.69 1.82
1038 1045 5.348451 GCCACAAACTGCAATAAAACATAGG 59.652 40.000 0.00 0.00 0.00 2.57
1092 1099 1.416401 CGCTTTCCTCCATTAGGCCTA 59.584 52.381 8.91 8.91 46.10 3.93
1117 1124 6.045459 ACCTGGATTGTCTTATATATTGCCCA 59.955 38.462 0.00 0.00 0.00 5.36
1314 1321 3.093814 TGAACGCAGGGAGTAACTCATA 58.906 45.455 0.00 0.00 31.08 2.15
1440 1447 4.693566 TGTTTATTACCGAAGCAAGACTGG 59.306 41.667 0.00 0.00 0.00 4.00
1452 1459 7.965655 TGTGTGCAAATCTATTGTTTATTACCG 59.034 33.333 0.00 0.00 0.00 4.02
1598 1605 3.305813 CCATCTGCATGCAAGTCAAAGTT 60.306 43.478 22.88 0.12 0.00 2.66
1739 1746 9.656323 TCCTTAATGTCAACTATAGGATAGTGT 57.344 33.333 4.43 0.00 0.00 3.55
2075 2082 6.419413 GGACTTCATATCGATCAGAGTTGAAC 59.581 42.308 0.00 0.00 36.78 3.18
2196 2310 8.511321 ACTTGTCGCAAAAATGAATGTATCTAA 58.489 29.630 0.00 0.00 0.00 2.10
2206 2320 6.016693 TCCTGAATTACTTGTCGCAAAAATGA 60.017 34.615 0.00 0.00 0.00 2.57
2212 2326 3.689161 CCATCCTGAATTACTTGTCGCAA 59.311 43.478 0.00 0.00 0.00 4.85
2213 2327 3.055458 TCCATCCTGAATTACTTGTCGCA 60.055 43.478 0.00 0.00 0.00 5.10
2228 2342 8.539856 AGGTAAATTTATATTCCCTCCATCCT 57.460 34.615 0.31 0.00 0.00 3.24
2317 2431 4.666512 ACCTGCCAACTGAACATTTCTAT 58.333 39.130 0.00 0.00 0.00 1.98
2489 2603 7.279090 ACACAAAATTTACTTACAAACAAGCCC 59.721 33.333 0.00 0.00 0.00 5.19
3334 3477 7.884816 ATTTGGACTCGTATGTATAAATCCG 57.115 36.000 0.00 0.00 0.00 4.18
3443 3586 9.234827 GTAGGTTGTTTATACTGTGGGTAAAAT 57.765 33.333 0.00 0.00 33.74 1.82
3566 3745 8.620116 ATCAACAAAAATATCAACAAAAGGGG 57.380 30.769 0.00 0.00 0.00 4.79
3602 3781 9.865321 TTATTAAATAACAGTCTAACTCACGCT 57.135 29.630 0.00 0.00 0.00 5.07
3721 3901 6.985653 TTTAGGGGTGATTTGTGAAATTGA 57.014 33.333 0.00 0.00 0.00 2.57
3758 3939 2.584835 AGTTGGCATGCAAACTAGGA 57.415 45.000 34.24 0.00 38.34 2.94
3759 3940 3.002656 CGATAGTTGGCATGCAAACTAGG 59.997 47.826 37.77 30.47 43.30 3.02
3807 3988 4.268687 GTGCTGAAGGTGGACGAG 57.731 61.111 0.00 0.00 0.00 4.18
4013 4194 6.953189 GTGTGTGTGTTTTTCTAACATTTTGC 59.047 34.615 0.00 0.00 32.23 3.68
4028 4209 1.265635 GTGTGTGTGTGTGTGTGTGTT 59.734 47.619 0.00 0.00 0.00 3.32
4030 4211 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4032 4213 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4067 4263 8.160342 CGTCAATGTAGTGTGAACTATTAACAC 58.840 37.037 1.48 1.48 43.60 3.32
4187 4426 5.532664 AGTCCCGATGGTAAATCTAAGTC 57.467 43.478 0.00 0.00 0.00 3.01
4201 4440 4.715297 ACATGTAACTTTCCTAGTCCCGAT 59.285 41.667 0.00 0.00 35.54 4.18
4202 4441 4.091549 ACATGTAACTTTCCTAGTCCCGA 58.908 43.478 0.00 0.00 35.54 5.14
4257 4496 7.160726 AGCTTTATAAAACACAACATGCCATT 58.839 30.769 0.00 0.00 0.00 3.16
4451 4701 7.934855 ATAAAGCTCATTGATGTTGAAGAGT 57.065 32.000 0.00 0.00 0.00 3.24
4587 4865 0.680280 TCCGACTACAGTGCTCTCCC 60.680 60.000 0.00 0.00 0.00 4.30
4636 4914 2.817844 GCCAACAGTACCCTTCGATTTT 59.182 45.455 0.00 0.00 0.00 1.82
4789 5067 0.969149 ACATTGGAGTCACGAGCTGA 59.031 50.000 0.00 0.00 0.00 4.26
4876 5154 2.824936 CCAATTTGCATGTACTCCACCA 59.175 45.455 0.00 0.00 0.00 4.17
4979 5257 6.017770 AGCACGCTGTACAACACTTTATTAAA 60.018 34.615 0.00 0.00 0.00 1.52
5049 5328 5.010933 TGAACCCAAACATTAGCCGATAAA 58.989 37.500 0.00 0.00 0.00 1.40
5073 5353 4.899352 AGATGAGAGGTGTAGCAAGTTT 57.101 40.909 0.00 0.00 0.00 2.66
5142 5422 5.520632 TCGGAATTCTGATCTAATCGTCAC 58.479 41.667 13.13 0.00 0.00 3.67
5323 5614 3.123804 GAGCCGCGGGTATATATTGATG 58.876 50.000 32.54 0.00 0.00 3.07
5391 5683 6.727697 TGGCTAGATAGATGGAAAGATGATGA 59.272 38.462 0.00 0.00 0.00 2.92
5396 5688 6.295802 GCTTCTGGCTAGATAGATGGAAAGAT 60.296 42.308 0.00 0.00 38.06 2.40
5579 5917 4.057428 GTGACCTGCGCTCCTCGT 62.057 66.667 9.73 0.00 41.07 4.18
5626 5964 1.612146 TGCTCCACCATCTTCGGGA 60.612 57.895 0.00 0.00 0.00 5.14
5687 6025 0.106769 TGGACAACCATGGCGCATAT 60.107 50.000 13.04 0.00 41.77 1.78
5844 6184 3.209410 GGTGATGGCGATTCTCAGATTT 58.791 45.455 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.