Multiple sequence alignment - TraesCS5B01G162300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G162300 chr5B 100.000 9768 0 0 1 9768 299601511 299611278 0.000000e+00 18039.0
1 TraesCS5B01G162300 chr5B 83.673 539 65 17 862 1381 441391570 441392104 4.100000e-133 486.0
2 TraesCS5B01G162300 chr5B 90.379 343 28 3 8639 8980 616208169 616207831 6.960000e-121 446.0
3 TraesCS5B01G162300 chr5B 92.547 161 10 1 713 873 208523451 208523293 7.630000e-56 230.0
4 TraesCS5B01G162300 chr5B 91.954 87 5 2 9119 9204 208256975 208257060 4.790000e-23 121.0
5 TraesCS5B01G162300 chr5B 88.889 99 9 2 2872 2969 299604338 299604435 4.790000e-23 121.0
6 TraesCS5B01G162300 chr5B 88.889 99 9 2 2828 2925 299604382 299604479 4.790000e-23 121.0
7 TraesCS5B01G162300 chr5B 87.000 100 10 3 9118 9215 550487870 550487968 1.040000e-19 110.0
8 TraesCS5B01G162300 chr5D 96.096 6429 157 34 3130 9501 265964098 265970489 0.000000e+00 10395.0
9 TraesCS5B01G162300 chr5D 94.893 3035 76 26 9 3007 265961109 265964100 0.000000e+00 4673.0
10 TraesCS5B01G162300 chr5D 91.241 274 17 2 9495 9768 265970540 265970806 5.570000e-97 366.0
11 TraesCS5B01G162300 chr5D 98.571 70 1 0 9122 9191 423532507 423532438 3.700000e-24 124.0
12 TraesCS5B01G162300 chr5D 97.143 70 2 0 9122 9191 18085121 18085052 1.720000e-22 119.0
13 TraesCS5B01G162300 chr5D 92.593 81 5 1 9122 9201 97387315 97387235 2.230000e-21 115.0
14 TraesCS5B01G162300 chr5D 88.000 100 8 3 2872 2969 265963921 265964018 2.230000e-21 115.0
15 TraesCS5B01G162300 chr5A 96.938 3266 58 14 3132 6367 354541933 354538680 0.000000e+00 5439.0
16 TraesCS5B01G162300 chr5A 95.549 3033 83 18 11 3005 354544953 354541935 0.000000e+00 4806.0
17 TraesCS5B01G162300 chr5A 95.153 2455 70 11 6643 9069 354537542 354535109 0.000000e+00 3829.0
18 TraesCS5B01G162300 chr5A 98.701 231 2 1 6409 6638 354538685 354538455 9.130000e-110 409.0
19 TraesCS5B01G162300 chr5A 81.735 438 50 16 6671 7090 353158821 353158396 1.220000e-88 339.0
20 TraesCS5B01G162300 chr5A 89.328 253 25 2 9212 9462 354534936 354534684 5.690000e-82 316.0
21 TraesCS5B01G162300 chr5A 98.148 54 1 0 9054 9107 354535092 354535039 2.900000e-15 95.3
22 TraesCS5B01G162300 chr1B 87.269 1728 177 27 4504 6221 321036795 321035101 0.000000e+00 1932.0
23 TraesCS5B01G162300 chr1B 81.737 1347 177 44 3211 4501 321038224 321036891 0.000000e+00 1061.0
24 TraesCS5B01G162300 chr1B 80.103 975 120 47 6372 7324 321035076 321034154 0.000000e+00 658.0
25 TraesCS5B01G162300 chr1B 81.118 805 78 37 7921 8672 321033196 321032413 2.370000e-160 577.0
26 TraesCS5B01G162300 chr1B 84.544 537 64 13 2089 2622 321039300 321038780 1.880000e-141 514.0
27 TraesCS5B01G162300 chr1B 84.835 455 44 12 7448 7897 321034118 321033684 1.510000e-117 435.0
28 TraesCS5B01G162300 chr1B 93.878 147 7 2 3001 3147 107152282 107152426 4.590000e-53 220.0
29 TraesCS5B01G162300 chr1B 98.592 71 1 0 9121 9191 492303980 492303910 1.030000e-24 126.0
30 TraesCS5B01G162300 chr1B 84.211 76 8 2 2931 3006 321038333 321038262 4.890000e-08 71.3
31 TraesCS5B01G162300 chr1B 85.455 55 8 0 1306 1360 649899844 649899790 3.810000e-04 58.4
32 TraesCS5B01G162300 chr2A 90.379 343 27 4 8639 8980 628696514 628696177 6.960000e-121 446.0
33 TraesCS5B01G162300 chr2A 89.247 93 8 2 9113 9204 10581366 10581275 2.230000e-21 115.0
34 TraesCS5B01G162300 chr2A 100.000 28 0 0 1665 1692 90749108 90749081 1.800000e-02 52.8
35 TraesCS5B01G162300 chr2B 89.796 343 30 3 8639 8980 202493151 202493489 1.510000e-117 435.0
36 TraesCS5B01G162300 chr2B 94.737 76 4 0 9113 9188 209075686 209075761 1.720000e-22 119.0
37 TraesCS5B01G162300 chr2B 87.719 57 5 2 1306 1361 346565815 346565760 2.280000e-06 65.8
38 TraesCS5B01G162300 chr2B 92.683 41 2 1 1320 1360 291554250 291554289 3.810000e-04 58.4
39 TraesCS5B01G162300 chr1A 88.319 351 38 2 7335 7682 513424228 513423878 1.520000e-112 418.0
40 TraesCS5B01G162300 chr1A 92.857 154 8 2 2990 3140 444433489 444433642 4.590000e-53 220.0
41 TraesCS5B01G162300 chr1A 92.157 153 8 4 2983 3132 574666401 574666552 7.680000e-51 213.0
42 TraesCS5B01G162300 chr1A 98.507 67 1 0 9122 9188 108071367 108071433 1.720000e-22 119.0
43 TraesCS5B01G162300 chr7A 80.952 441 46 19 6671 7090 130081166 130080743 2.050000e-81 315.0
44 TraesCS5B01G162300 chr7A 75.000 264 50 12 1368 1627 458767811 458767560 3.730000e-19 108.0
45 TraesCS5B01G162300 chr7A 96.970 33 1 0 1328 1360 470462774 470462806 1.000000e-03 56.5
46 TraesCS5B01G162300 chr1D 93.413 167 9 2 708 873 7349698 7349863 7.580000e-61 246.0
47 TraesCS5B01G162300 chr1D 95.522 134 6 0 2999 3132 178459505 178459638 2.140000e-51 215.0
48 TraesCS5B01G162300 chr1D 97.143 70 2 0 9122 9191 403331789 403331720 1.720000e-22 119.0
49 TraesCS5B01G162300 chr1D 97.059 68 2 0 9121 9188 408872402 408872469 2.230000e-21 115.0
50 TraesCS5B01G162300 chr1D 92.308 78 5 1 9121 9198 469813400 469813476 1.040000e-19 110.0
51 TraesCS5B01G162300 chr4B 94.805 154 8 0 713 866 106227561 106227408 3.530000e-59 241.0
52 TraesCS5B01G162300 chr4B 94.805 77 3 1 9122 9198 391565599 391565524 1.720000e-22 119.0
53 TraesCS5B01G162300 chr4B 95.833 72 3 0 9120 9191 486280069 486279998 6.200000e-22 117.0
54 TraesCS5B01G162300 chr7D 93.750 160 9 1 709 867 34756861 34757020 1.270000e-58 239.0
55 TraesCS5B01G162300 chr7D 91.813 171 12 2 707 875 454079236 454079066 4.560000e-58 237.0
56 TraesCS5B01G162300 chr7D 100.000 28 0 0 1329 1356 14942379 14942406 1.800000e-02 52.8
57 TraesCS5B01G162300 chr6D 93.168 161 10 1 706 865 410398271 410398431 1.640000e-57 235.0
58 TraesCS5B01G162300 chr6D 98.507 67 1 0 9122 9188 108860649 108860715 1.720000e-22 119.0
59 TraesCS5B01G162300 chr6D 98.507 67 1 0 9122 9188 302751875 302751941 1.720000e-22 119.0
60 TraesCS5B01G162300 chr6D 97.143 70 2 0 9122 9191 472799365 472799434 1.720000e-22 119.0
61 TraesCS5B01G162300 chr6D 95.775 71 3 0 9121 9191 39092800 39092730 2.230000e-21 115.0
62 TraesCS5B01G162300 chr6D 97.015 67 2 0 9122 9188 36114516 36114582 8.020000e-21 113.0
63 TraesCS5B01G162300 chr6D 95.714 70 3 0 9122 9191 87087967 87087898 8.020000e-21 113.0
64 TraesCS5B01G162300 chr6D 95.714 70 3 0 9122 9191 147675686 147675617 8.020000e-21 113.0
65 TraesCS5B01G162300 chr6D 94.521 73 4 0 9119 9191 341196790 341196718 8.020000e-21 113.0
66 TraesCS5B01G162300 chr6D 95.714 70 3 0 9122 9191 366701222 366701153 8.020000e-21 113.0
67 TraesCS5B01G162300 chr6D 92.105 76 6 0 9113 9188 81674629 81674704 3.730000e-19 108.0
68 TraesCS5B01G162300 chr6D 87.640 89 9 2 9117 9204 99226176 99226263 1.740000e-17 102.0
69 TraesCS5B01G162300 chr6D 96.970 33 1 0 1328 1360 95933411 95933379 1.000000e-03 56.5
70 TraesCS5B01G162300 chr6A 92.547 161 11 1 706 865 555729183 555729343 7.630000e-56 230.0
71 TraesCS5B01G162300 chr6A 88.889 171 14 5 3001 3169 147336886 147336719 1.290000e-48 206.0
72 TraesCS5B01G162300 chr3D 98.462 130 2 0 3003 3132 313287005 313286876 7.630000e-56 230.0
73 TraesCS5B01G162300 chr3D 97.297 74 2 0 9118 9191 292034865 292034792 1.030000e-24 126.0
74 TraesCS5B01G162300 chr3D 92.683 82 5 1 9117 9198 587436606 587436526 6.200000e-22 117.0
75 TraesCS5B01G162300 chr3D 89.888 89 6 3 9117 9204 460702726 460702640 2.880000e-20 111.0
76 TraesCS5B01G162300 chr3D 90.476 84 6 2 9122 9204 358788228 358788310 1.040000e-19 110.0
77 TraesCS5B01G162300 chr3D 96.970 33 1 0 1328 1360 351837613 351837581 1.000000e-03 56.5
78 TraesCS5B01G162300 chrUn 92.857 154 8 2 2990 3140 477687433 477687586 4.590000e-53 220.0
79 TraesCS5B01G162300 chr4A 94.444 144 7 1 2998 3140 543398335 543398192 4.590000e-53 220.0
80 TraesCS5B01G162300 chr3A 96.875 128 4 0 3006 3133 507758005 507758132 2.140000e-51 215.0
81 TraesCS5B01G162300 chr3B 95.946 74 3 0 9115 9188 451117788 451117861 4.790000e-23 121.0
82 TraesCS5B01G162300 chr2D 95.775 71 3 0 9121 9191 428670019 428669949 2.230000e-21 115.0
83 TraesCS5B01G162300 chr4D 92.208 77 6 0 9115 9191 428946502 428946426 1.040000e-19 110.0
84 TraesCS5B01G162300 chr4D 92.857 70 5 0 9122 9191 461464222 461464153 1.740000e-17 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G162300 chr5B 299601511 299611278 9767 False 18039.000000 18039 100.000000 1 9768 1 chr5B.!!$F2 9767
1 TraesCS5B01G162300 chr5B 441391570 441392104 534 False 486.000000 486 83.673000 862 1381 1 chr5B.!!$F3 519
2 TraesCS5B01G162300 chr5D 265961109 265970806 9697 False 3887.250000 10395 92.557500 9 9768 4 chr5D.!!$F1 9759
3 TraesCS5B01G162300 chr5A 354534684 354544953 10269 True 2482.383333 5439 95.636167 11 9462 6 chr5A.!!$R2 9451
4 TraesCS5B01G162300 chr1B 321032413 321039300 6887 True 749.757143 1932 83.402429 2089 8672 7 chr1B.!!$R3 6583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
630 654 1.268589 CGGTAGACCTAGTGACATGCG 60.269 57.143 0.00 0.00 0.00 4.73 F
1132 1175 1.762957 TGCTGCAGTAGTATCCCCTTC 59.237 52.381 16.64 0.00 0.00 3.46 F
2637 2699 0.602905 GTGTCCGCACTGCCTACTTT 60.603 55.000 0.00 0.00 42.13 2.66 F
3024 3324 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17 F
3027 3327 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12 F
3028 3328 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24 F
4549 5006 0.383231 CATTGCTCCGCAGATTTCCC 59.617 55.000 0.00 0.00 40.61 3.97 F
4681 5138 0.537600 TGGGAAAATCGAAACGCCCA 60.538 50.000 13.49 13.49 42.95 5.36 F
4872 5329 1.858458 TCTCAGCAAAGAACGACGTTG 59.142 47.619 19.60 5.41 40.06 4.10 F
5966 6442 2.293399 CTGTTAGGTTTGACCCAACTGC 59.707 50.000 9.26 0.00 39.99 4.40 F
6886 8277 4.724074 TGCTTGGATTATCAAAGCTTGG 57.276 40.909 28.11 0.00 0.00 3.61 F
6966 8359 0.179094 TCTCCGTCACACAAGCGTTT 60.179 50.000 0.00 0.00 0.00 3.60 F
7442 8849 0.968405 TTCCCTCCACATGCAAAAGC 59.032 50.000 0.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1449 1499 0.667993 TTGCCCTTGTTCTTTGAGCG 59.332 50.000 0.00 0.00 0.00 5.03 R
3008 3308 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 R
4424 4790 1.472480 CGGGTTGGCTCTAAACATTGG 59.528 52.381 0.00 0.00 0.00 3.16 R
4535 4992 2.042686 TTCATGGGAAATCTGCGGAG 57.957 50.000 0.00 0.00 0.00 4.63 R
4549 5006 2.160417 GCTTCCACTCCGAACTTTCATG 59.840 50.000 0.00 0.00 0.00 3.07 R
4670 5127 2.940410 GGAGATAATTTGGGCGTTTCGA 59.060 45.455 0.00 0.00 0.00 3.71 R
5354 5828 1.243342 TTGCCCAACGCTCAATCCTG 61.243 55.000 0.00 0.00 38.78 3.86 R
6304 6783 3.663995 TTGTTCATTGAATGGTGCAGG 57.336 42.857 5.20 0.00 0.00 4.85 R
6869 8260 4.640201 GCTACACCAAGCTTTGATAATCCA 59.360 41.667 4.25 0.00 39.50 3.41 R
6934 8327 0.108615 ACGGAGATCGCTCTTTGTGG 60.109 55.000 0.00 0.00 43.89 4.17 R
8136 10028 1.758862 AGGATGCCAAATAAAGCCTGC 59.241 47.619 0.00 0.00 0.00 4.85 R
8653 10586 4.574013 CCAGATGAAGTATCAGCAAACTCC 59.426 45.833 0.00 0.00 44.44 3.85 R
9122 11179 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 116 5.778241 TGTTTCTGGTCTGGATGTAGAGTTA 59.222 40.000 0.00 0.00 0.00 2.24
343 344 4.343814 CCACTGTTCCCAAGGTTTAAACAT 59.656 41.667 19.57 10.32 0.00 2.71
347 348 5.908341 TGTTCCCAAGGTTTAAACATCAAC 58.092 37.500 19.57 13.12 0.00 3.18
400 401 3.862267 TGTCAAAATTGCTTTGGTTCACG 59.138 39.130 0.00 0.00 44.00 4.35
417 418 2.952978 TCACGGCCATTTTACTGTTGTT 59.047 40.909 2.24 0.00 0.00 2.83
580 604 1.732941 TGCTAATACGTGGGCACAAG 58.267 50.000 0.00 0.00 0.00 3.16
630 654 1.268589 CGGTAGACCTAGTGACATGCG 60.269 57.143 0.00 0.00 0.00 4.73
949 975 3.255888 TGTGTTGCTGGTTGTACAAACAA 59.744 39.130 25.61 16.48 43.32 2.83
957 983 5.858581 GCTGGTTGTACAAACAATCTGAATC 59.141 40.000 25.61 2.14 46.84 2.52
1132 1175 1.762957 TGCTGCAGTAGTATCCCCTTC 59.237 52.381 16.64 0.00 0.00 3.46
1292 1339 9.726438 ATAAAAGAGTAATGTAGCACTGACTTT 57.274 29.630 0.00 0.00 0.00 2.66
1424 1474 6.575162 AGGAATTTTACAATCCACTCACAC 57.425 37.500 0.00 0.00 0.00 3.82
1588 1646 2.955660 TGTGAGTCAAACACCCAATTCC 59.044 45.455 0.00 0.00 37.45 3.01
1600 1658 3.194542 CACCCAATTCCGCAAAATTCCTA 59.805 43.478 0.00 0.00 0.00 2.94
1646 1705 2.374504 ACATGCATCCTCCTATTCCTGG 59.625 50.000 0.00 0.00 0.00 4.45
1832 1891 1.608590 CGTGTGCCAATTTCTCCTTGT 59.391 47.619 0.00 0.00 0.00 3.16
1908 1969 5.466127 ACCTTTTAATTGCCCTAGATGGA 57.534 39.130 0.00 0.00 38.35 3.41
1974 2035 6.381498 TGGTTTATGTCCCACTTCTATTCA 57.619 37.500 0.00 0.00 0.00 2.57
2001 2062 4.255833 TGTTCTTTGCATCAATTGACCC 57.744 40.909 11.07 5.27 0.00 4.46
2178 2239 4.922206 TGTGAAGCTTAGTGGGATTGATT 58.078 39.130 0.00 0.00 0.00 2.57
2531 2592 5.102313 TGTACTGTCGATCATAGCAAACTG 58.898 41.667 0.00 0.00 0.00 3.16
2637 2699 0.602905 GTGTCCGCACTGCCTACTTT 60.603 55.000 0.00 0.00 42.13 2.66
2929 3228 7.487829 GCTGCGTTGAATTTCCTATTTGAAATA 59.512 33.333 0.00 0.00 42.58 1.40
3013 3313 6.927294 CAAAGGATTGTTATGTACTCCCTC 57.073 41.667 0.00 0.00 0.00 4.30
3014 3314 5.632034 AAGGATTGTTATGTACTCCCTCC 57.368 43.478 0.00 0.00 0.00 4.30
3015 3315 3.641906 AGGATTGTTATGTACTCCCTCCG 59.358 47.826 0.00 0.00 0.00 4.63
3016 3316 3.387050 GGATTGTTATGTACTCCCTCCGT 59.613 47.826 0.00 0.00 0.00 4.69
3017 3317 4.501058 GGATTGTTATGTACTCCCTCCGTC 60.501 50.000 0.00 0.00 0.00 4.79
3018 3318 2.381911 TGTTATGTACTCCCTCCGTCC 58.618 52.381 0.00 0.00 0.00 4.79
3019 3319 1.336125 GTTATGTACTCCCTCCGTCCG 59.664 57.143 0.00 0.00 0.00 4.79
3020 3320 0.179009 TATGTACTCCCTCCGTCCGG 60.179 60.000 0.00 0.00 0.00 5.14
3021 3321 1.929860 ATGTACTCCCTCCGTCCGGA 61.930 60.000 0.00 0.00 42.90 5.14
3022 3322 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
3023 3323 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
3024 3324 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3025 3325 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3026 3326 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3027 3327 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3028 3328 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3029 3329 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3030 3330 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3031 3331 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3032 3332 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
3033 3333 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
3034 3334 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
3035 3335 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
3036 3336 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
3037 3337 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
3038 3338 5.628134 GTCCGGAAATACTTGTCATCAAAC 58.372 41.667 5.23 0.00 32.87 2.93
3039 3339 5.411669 GTCCGGAAATACTTGTCATCAAACT 59.588 40.000 5.23 0.00 32.87 2.66
3040 3340 5.411361 TCCGGAAATACTTGTCATCAAACTG 59.589 40.000 0.00 0.00 32.87 3.16
3041 3341 5.391950 CCGGAAATACTTGTCATCAAACTGG 60.392 44.000 0.00 0.00 32.87 4.00
3042 3342 5.411361 CGGAAATACTTGTCATCAAACTGGA 59.589 40.000 0.00 0.00 32.87 3.86
3043 3343 6.094048 CGGAAATACTTGTCATCAAACTGGAT 59.906 38.462 0.00 0.00 32.87 3.41
3044 3344 7.279981 CGGAAATACTTGTCATCAAACTGGATA 59.720 37.037 0.00 0.00 32.87 2.59
3045 3345 8.956426 GGAAATACTTGTCATCAAACTGGATAA 58.044 33.333 0.00 0.00 32.87 1.75
3049 3349 7.219484 ACTTGTCATCAAACTGGATAAAAGG 57.781 36.000 0.00 0.00 32.87 3.11
3050 3350 6.209391 ACTTGTCATCAAACTGGATAAAAGGG 59.791 38.462 0.00 0.00 32.87 3.95
3051 3351 5.016173 TGTCATCAAACTGGATAAAAGGGG 58.984 41.667 0.00 0.00 0.00 4.79
3052 3352 5.222233 TGTCATCAAACTGGATAAAAGGGGA 60.222 40.000 0.00 0.00 0.00 4.81
3053 3353 5.893824 GTCATCAAACTGGATAAAAGGGGAT 59.106 40.000 0.00 0.00 0.00 3.85
3054 3354 5.893255 TCATCAAACTGGATAAAAGGGGATG 59.107 40.000 0.00 0.00 0.00 3.51
3055 3355 5.269554 TCAAACTGGATAAAAGGGGATGT 57.730 39.130 0.00 0.00 0.00 3.06
3056 3356 6.395780 TCAAACTGGATAAAAGGGGATGTA 57.604 37.500 0.00 0.00 0.00 2.29
3057 3357 6.980577 TCAAACTGGATAAAAGGGGATGTAT 58.019 36.000 0.00 0.00 0.00 2.29
3058 3358 7.060421 TCAAACTGGATAAAAGGGGATGTATC 58.940 38.462 0.00 0.00 0.00 2.24
3059 3359 6.848562 AACTGGATAAAAGGGGATGTATCT 57.151 37.500 0.00 0.00 0.00 1.98
3060 3360 7.947782 AACTGGATAAAAGGGGATGTATCTA 57.052 36.000 0.00 0.00 0.00 1.98
3061 3361 7.560796 ACTGGATAAAAGGGGATGTATCTAG 57.439 40.000 0.00 0.00 37.50 2.43
3062 3362 7.313731 ACTGGATAAAAGGGGATGTATCTAGA 58.686 38.462 9.13 0.00 35.96 2.43
3063 3363 7.964293 ACTGGATAAAAGGGGATGTATCTAGAT 59.036 37.037 10.73 10.73 35.96 1.98
3064 3364 8.150827 TGGATAAAAGGGGATGTATCTAGATG 57.849 38.462 15.79 0.00 0.00 2.90
3065 3365 7.739444 TGGATAAAAGGGGATGTATCTAGATGT 59.261 37.037 15.79 1.25 0.00 3.06
3066 3366 9.268282 GGATAAAAGGGGATGTATCTAGATGTA 57.732 37.037 15.79 4.44 0.00 2.29
3073 3373 9.845214 AGGGGATGTATCTAGATGTATTTTAGT 57.155 33.333 15.79 0.00 0.00 2.24
3097 3397 9.186837 AGTTCTAGATACGTCTCTTTTTATCCA 57.813 33.333 8.90 0.00 35.87 3.41
3098 3398 9.968870 GTTCTAGATACGTCTCTTTTTATCCAT 57.031 33.333 8.90 0.00 35.87 3.41
3103 3403 9.667107 AGATACGTCTCTTTTTATCCATTTTGA 57.333 29.630 0.00 0.00 0.00 2.69
3106 3406 8.335532 ACGTCTCTTTTTATCCATTTTGATGA 57.664 30.769 0.00 0.00 0.00 2.92
3107 3407 8.237267 ACGTCTCTTTTTATCCATTTTGATGAC 58.763 33.333 0.00 0.00 0.00 3.06
3108 3408 8.236586 CGTCTCTTTTTATCCATTTTGATGACA 58.763 33.333 0.00 0.00 0.00 3.58
3109 3409 9.912634 GTCTCTTTTTATCCATTTTGATGACAA 57.087 29.630 0.00 0.00 0.00 3.18
3111 3411 9.918630 CTCTTTTTATCCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
3118 3418 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
3119 3419 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
3120 3420 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
3121 3421 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
3122 3422 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
3123 3423 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
3124 3424 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
3125 3425 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
3126 3426 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
3127 3427 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
3128 3428 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
3129 3429 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
3130 3430 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
3131 3431 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
3192 3493 5.728637 ACTCATTGAGGTCCCAAATTTTC 57.271 39.130 17.66 0.00 33.35 2.29
3391 3696 4.514401 AGCAGTTTGTAGTGGGTATAAGC 58.486 43.478 0.00 0.00 0.00 3.09
3429 3734 2.025887 CCCTCAAATCAGTTGCCCTAGT 60.026 50.000 0.00 0.00 37.13 2.57
3470 3775 2.194212 CATGCCCAGGATGCTCTGC 61.194 63.158 0.00 0.00 33.64 4.26
4152 4479 4.816385 CGTATGGTTCTATTCCTGCATTGT 59.184 41.667 0.00 0.00 0.00 2.71
4240 4592 1.338020 CTTGTTTGTCCAACCTGCCTC 59.662 52.381 0.00 0.00 33.97 4.70
4424 4790 5.304778 ACCTTTCCACATAATGCAAAAACC 58.695 37.500 0.00 0.00 0.00 3.27
4440 4806 5.363939 CAAAAACCCAATGTTTAGAGCCAA 58.636 37.500 0.00 0.00 46.39 4.52
4442 4808 2.525368 ACCCAATGTTTAGAGCCAACC 58.475 47.619 0.00 0.00 0.00 3.77
4535 4992 8.175069 TCTTTAGTCATGTCGAAATTACATTGC 58.825 33.333 2.84 0.00 35.39 3.56
4549 5006 0.383231 CATTGCTCCGCAGATTTCCC 59.617 55.000 0.00 0.00 40.61 3.97
4670 5127 3.196254 GCCATGTCTTGATGTGGGAAAAT 59.804 43.478 0.00 0.00 32.35 1.82
4681 5138 0.537600 TGGGAAAATCGAAACGCCCA 60.538 50.000 13.49 13.49 42.95 5.36
4759 5216 2.997485 CCAGTTTTAGTTGCTGGCTC 57.003 50.000 0.00 0.00 42.54 4.70
4763 5220 2.158608 AGTTTTAGTTGCTGGCTCCACT 60.159 45.455 0.00 0.00 0.00 4.00
4872 5329 1.858458 TCTCAGCAAAGAACGACGTTG 59.142 47.619 19.60 5.41 40.06 4.10
5264 5738 5.198207 AACAAGGTTGCTACTTGGTTACTT 58.802 37.500 16.15 0.74 42.91 2.24
5265 5739 5.067283 AACAAGGTTGCTACTTGGTTACTTG 59.933 40.000 16.15 12.43 42.91 3.16
5266 5740 4.432980 AGGTTGCTACTTGGTTACTTGT 57.567 40.909 0.00 0.00 0.00 3.16
5267 5741 4.134563 AGGTTGCTACTTGGTTACTTGTG 58.865 43.478 0.00 0.00 0.00 3.33
5268 5742 4.131596 GGTTGCTACTTGGTTACTTGTGA 58.868 43.478 0.00 0.00 0.00 3.58
5269 5743 4.213482 GGTTGCTACTTGGTTACTTGTGAG 59.787 45.833 0.00 0.00 0.00 3.51
5270 5744 4.682778 TGCTACTTGGTTACTTGTGAGT 57.317 40.909 0.00 0.00 39.97 3.41
5354 5828 3.753272 TGCAGAAACTATTTGAGCCTGTC 59.247 43.478 0.00 0.00 0.00 3.51
5966 6442 2.293399 CTGTTAGGTTTGACCCAACTGC 59.707 50.000 9.26 0.00 39.99 4.40
6629 7108 6.016610 TGTTTACACCTGGCATTCTTTTAGTC 60.017 38.462 0.00 0.00 0.00 2.59
6639 7118 8.220755 TGGCATTCTTTTAGTCATATTGTACC 57.779 34.615 0.00 0.00 0.00 3.34
6825 8215 9.066892 TGGAATTTACATTCTGATAGTTATGCC 57.933 33.333 1.82 0.00 39.17 4.40
6886 8277 4.724074 TGCTTGGATTATCAAAGCTTGG 57.276 40.909 28.11 0.00 0.00 3.61
6966 8359 0.179094 TCTCCGTCACACAAGCGTTT 60.179 50.000 0.00 0.00 0.00 3.60
7069 8464 8.451908 AATCAAGAATTAAGTATGGTAGTGGC 57.548 34.615 0.00 0.00 0.00 5.01
7073 8468 6.349300 AGAATTAAGTATGGTAGTGGCAGTG 58.651 40.000 4.76 0.00 0.00 3.66
7074 8469 5.693769 ATTAAGTATGGTAGTGGCAGTGT 57.306 39.130 4.76 0.00 0.00 3.55
7163 8566 6.798482 TGCTGCATTATCTATTCCACTTTTG 58.202 36.000 0.00 0.00 0.00 2.44
7218 8625 8.936070 ATTAGTGTGTGTTGCTATATTTACGA 57.064 30.769 0.00 0.00 0.00 3.43
7430 8837 5.890424 TTGTGAACGAATTATTTCCCTCC 57.110 39.130 0.00 0.00 0.00 4.30
7442 8849 0.968405 TTCCCTCCACATGCAAAAGC 59.032 50.000 0.00 0.00 0.00 3.51
7888 9302 4.261322 GCTGGTATGCAATTGTCCTATGTG 60.261 45.833 7.40 0.00 0.00 3.21
8125 10017 3.137533 TGTGATTCGACTGTTGATTGCA 58.862 40.909 0.00 0.00 0.00 4.08
8136 10028 6.292542 CGACTGTTGATTGCATAGTTATCTGG 60.293 42.308 0.00 0.00 0.00 3.86
8408 10329 3.631686 TGTTACTGTACAGTACGTGGTGT 59.368 43.478 30.76 9.25 43.02 4.16
8525 10458 8.141835 TGTTGACATGTAGTATATCACAATGC 57.858 34.615 0.00 0.00 0.00 3.56
8553 10486 8.844441 TTCCTTTTGTATTTTTAAGTGTGTCG 57.156 30.769 0.00 0.00 0.00 4.35
8564 10497 6.424176 TTTAAGTGTGTCGTGACATTTGAA 57.576 33.333 5.91 2.86 43.97 2.69
8569 10502 5.525745 AGTGTGTCGTGACATTTGAACAATA 59.474 36.000 5.91 0.00 43.97 1.90
8651 10584 6.197276 CAGATGAGCCAGTTCATAAAATTCG 58.803 40.000 0.00 0.00 37.90 3.34
8652 10585 6.037500 CAGATGAGCCAGTTCATAAAATTCGA 59.962 38.462 0.00 0.00 37.90 3.71
8653 10586 5.801350 TGAGCCAGTTCATAAAATTCGAG 57.199 39.130 0.00 0.00 0.00 4.04
8897 10834 2.363359 GGTATAGTGTCCGTGGTTAGGG 59.637 54.545 0.00 0.00 0.00 3.53
9000 10938 4.436986 GCTCCATTTGTAAGCCGTACTTTC 60.437 45.833 0.00 0.00 39.97 2.62
9015 10953 2.375146 ACTTTCGGCATATCCCAAACC 58.625 47.619 0.00 0.00 0.00 3.27
9122 11179 6.976934 TGTGATGTCTATAGATGCAACCTA 57.023 37.500 5.57 0.00 0.00 3.08
9123 11180 6.749139 TGTGATGTCTATAGATGCAACCTAC 58.251 40.000 5.57 0.00 0.00 3.18
9124 11181 6.551227 TGTGATGTCTATAGATGCAACCTACT 59.449 38.462 5.57 0.00 0.00 2.57
9125 11182 7.087639 GTGATGTCTATAGATGCAACCTACTC 58.912 42.308 5.57 0.00 0.00 2.59
9126 11183 6.209589 TGATGTCTATAGATGCAACCTACTCC 59.790 42.308 5.57 0.00 0.00 3.85
9127 11184 4.833380 TGTCTATAGATGCAACCTACTCCC 59.167 45.833 5.57 0.00 0.00 4.30
9128 11185 5.081032 GTCTATAGATGCAACCTACTCCCT 58.919 45.833 5.57 0.00 0.00 4.20
9129 11186 5.184287 GTCTATAGATGCAACCTACTCCCTC 59.816 48.000 5.57 0.00 0.00 4.30
9130 11187 1.501582 AGATGCAACCTACTCCCTCC 58.498 55.000 0.00 0.00 0.00 4.30
9131 11188 0.105039 GATGCAACCTACTCCCTCCG 59.895 60.000 0.00 0.00 0.00 4.63
9132 11189 0.617820 ATGCAACCTACTCCCTCCGT 60.618 55.000 0.00 0.00 0.00 4.69
9133 11190 1.255667 TGCAACCTACTCCCTCCGTC 61.256 60.000 0.00 0.00 0.00 4.79
9134 11191 1.957765 GCAACCTACTCCCTCCGTCC 61.958 65.000 0.00 0.00 0.00 4.79
9135 11192 1.379576 AACCTACTCCCTCCGTCCG 60.380 63.158 0.00 0.00 0.00 4.79
9136 11193 2.518825 CCTACTCCCTCCGTCCGG 60.519 72.222 0.00 0.00 0.00 5.14
9137 11194 2.593978 CTACTCCCTCCGTCCGGA 59.406 66.667 0.00 0.00 42.90 5.14
9138 11195 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
9139 11196 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
9140 11197 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
9141 11198 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
9142 11199 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
9143 11200 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
9144 11201 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
9145 11202 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
9146 11203 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
9147 11204 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
9148 11205 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
9149 11206 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
9150 11207 1.648504 GTCCGGAAATACTTGTCGGG 58.351 55.000 5.23 0.00 40.92 5.14
9151 11208 0.538118 TCCGGAAATACTTGTCGGGG 59.462 55.000 0.00 0.00 40.92 5.73
9152 11209 0.538118 CCGGAAATACTTGTCGGGGA 59.462 55.000 0.00 0.00 37.35 4.81
9153 11210 1.065998 CCGGAAATACTTGTCGGGGAA 60.066 52.381 0.00 0.00 37.35 3.97
9154 11211 2.616001 CCGGAAATACTTGTCGGGGAAA 60.616 50.000 0.00 0.00 37.35 3.13
9160 11217 2.128771 ACTTGTCGGGGAAATGGATG 57.871 50.000 0.00 0.00 0.00 3.51
9169 11226 4.527038 TCGGGGAAATGGATGTATCTAGAC 59.473 45.833 0.00 0.00 0.00 2.59
9227 11308 3.764237 GGGAGTACCTGTCAAGAAACA 57.236 47.619 0.00 0.00 35.85 2.83
9245 11326 6.644347 AGAAACATTATACTGGACAGGTGAG 58.356 40.000 4.14 0.00 0.00 3.51
9337 11419 2.656422 CGTTGCACGGAATGAAAATGAC 59.344 45.455 0.00 0.00 38.08 3.06
9449 11532 6.087687 GCGTAGGTTTTGAAGCAAGTATTTTC 59.912 38.462 0.00 0.00 0.00 2.29
9467 11550 0.662619 TCTGCCAACGACTTGCTTTG 59.337 50.000 0.00 0.00 0.00 2.77
9528 11668 8.853345 CAAATAATTGTCACATCACTAACAAGC 58.147 33.333 0.00 0.00 35.30 4.01
9600 11740 6.930068 TTAGAACCATAGATAACCCTAGGC 57.070 41.667 2.05 0.00 0.00 3.93
9601 11741 4.168883 AGAACCATAGATAACCCTAGGCC 58.831 47.826 2.05 0.00 0.00 5.19
9602 11742 2.917205 ACCATAGATAACCCTAGGCCC 58.083 52.381 2.05 0.00 0.00 5.80
9603 11743 2.459102 ACCATAGATAACCCTAGGCCCT 59.541 50.000 2.05 0.00 0.00 5.19
9604 11744 3.671130 ACCATAGATAACCCTAGGCCCTA 59.329 47.826 2.05 0.00 0.00 3.53
9605 11745 4.264895 ACCATAGATAACCCTAGGCCCTAG 60.265 50.000 11.08 11.08 34.16 3.02
9606 11746 2.328992 AGATAACCCTAGGCCCTAGC 57.671 55.000 12.62 0.00 33.12 3.42
9607 11747 1.508185 AGATAACCCTAGGCCCTAGCA 59.492 52.381 12.62 0.00 42.56 3.49
9609 11749 1.802553 TAACCCTAGGCCCTAGCAAG 58.197 55.000 12.62 5.78 42.56 4.01
9610 11750 1.636769 AACCCTAGGCCCTAGCAAGC 61.637 60.000 12.62 0.00 42.56 4.01
9611 11751 1.768077 CCCTAGGCCCTAGCAAGCT 60.768 63.158 12.62 0.00 42.56 3.74
9612 11752 1.348775 CCCTAGGCCCTAGCAAGCTT 61.349 60.000 12.62 0.00 42.56 3.74
9613 11753 0.179034 CCTAGGCCCTAGCAAGCTTG 60.179 60.000 22.44 22.44 42.56 4.01
9640 11780 1.930204 ACCTTATTCCCTTCCCTTGGG 59.070 52.381 0.00 0.00 45.90 4.12
9664 11804 7.604545 GGGCAGTGAGAATAATAGAATAAGGAC 59.395 40.741 0.00 0.00 0.00 3.85
9665 11805 7.329717 GGCAGTGAGAATAATAGAATAAGGACG 59.670 40.741 0.00 0.00 0.00 4.79
9692 11832 2.037847 AACCTCCCCCTTGCATGC 59.962 61.111 11.82 11.82 0.00 4.06
9693 11833 2.551413 AACCTCCCCCTTGCATGCT 61.551 57.895 20.33 0.00 0.00 3.79
9704 11844 3.640029 CCCTTGCATGCTTGGATAATCTT 59.360 43.478 24.35 0.00 0.00 2.40
9711 11851 6.261603 TGCATGCTTGGATAATCTTAAGACAG 59.738 38.462 20.33 0.00 0.00 3.51
9713 11853 7.201767 GCATGCTTGGATAATCTTAAGACAGTT 60.202 37.037 11.37 1.00 0.00 3.16
9738 11878 7.647907 AAATTCAAAGATCACATTTGAGCAC 57.352 32.000 0.00 0.00 44.86 4.40
9763 11903 0.108424 CTGGTCTGCTAGCTCCACAC 60.108 60.000 17.23 5.05 0.00 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 116 0.981183 TGGTGGACCTGCTAAATCGT 59.019 50.000 0.00 0.00 36.82 3.73
215 216 1.730501 ACATCCAGAACACATCAGCG 58.269 50.000 0.00 0.00 0.00 5.18
400 401 2.412870 GCCAACAACAGTAAAATGGCC 58.587 47.619 0.00 0.00 45.84 5.36
462 469 4.709840 CAGGACCAGTTGCTGAGG 57.290 61.111 0.00 0.00 46.53 3.86
630 654 4.537135 TCCACTGTAACACTCAATCCTC 57.463 45.455 0.00 0.00 0.00 3.71
753 779 4.403734 TCAGTCCGCATGTAGTCCATATA 58.596 43.478 0.00 0.00 30.71 0.86
767 793 2.143122 TGTTCACTCATTTCAGTCCGC 58.857 47.619 0.00 0.00 0.00 5.54
915 941 4.082571 ACCAGCAACACAAGCAGATATTTC 60.083 41.667 0.00 0.00 0.00 2.17
949 975 3.645434 AGTGAGCTCTCCAGATTCAGAT 58.355 45.455 16.19 0.00 0.00 2.90
976 1002 2.775856 GCTCCTGCGTGATCTCGGA 61.776 63.158 17.94 14.51 0.00 4.55
1085 1117 6.688578 TGAATAGAACACTGAGGTTGTCTAC 58.311 40.000 0.00 0.00 0.00 2.59
1132 1175 9.323985 TCTTGTTTCTGGGTATTTTTCATTTTG 57.676 29.630 0.00 0.00 0.00 2.44
1292 1339 6.889177 TCCTATGAATCAATGCCACAAGTTAA 59.111 34.615 0.00 0.00 0.00 2.01
1449 1499 0.667993 TTGCCCTTGTTCTTTGAGCG 59.332 50.000 0.00 0.00 0.00 5.03
1588 1646 9.139174 AGATTGTAAAAACATAGGAATTTTGCG 57.861 29.630 6.11 0.00 33.23 4.85
1600 1658 8.603181 GTGCAAAACAGAAGATTGTAAAAACAT 58.397 29.630 0.00 0.00 0.00 2.71
1656 1715 5.120208 ACAGGATTCTGAAAATGTACGAACG 59.880 40.000 8.39 0.00 43.49 3.95
1660 1719 6.480524 TTCACAGGATTCTGAAAATGTACG 57.519 37.500 8.39 0.00 43.49 3.67
1790 1849 7.538678 ACACGCTAAAATTGAATGTGAGAAATC 59.461 33.333 0.00 0.00 0.00 2.17
1812 1871 1.608590 ACAAGGAGAAATTGGCACACG 59.391 47.619 0.00 0.00 39.29 4.49
1832 1891 5.255687 AGGTAACATCAATCATGACAAGCA 58.744 37.500 0.00 0.00 38.69 3.91
1908 1969 7.362487 GGAAACAATTTGGGAAAACAATGTTGT 60.362 33.333 0.00 0.00 44.72 3.32
1974 2035 5.244402 TCAATTGATGCAAAGAACATGAGGT 59.756 36.000 3.38 0.00 0.00 3.85
2001 2062 9.319143 CAGGTACCTAAATGAAGTCAATTCTAG 57.681 37.037 15.80 0.00 38.83 2.43
2259 2320 5.796424 AATTTCAGAACAGGCATTGAACT 57.204 34.783 0.00 0.00 29.96 3.01
2513 2574 3.679502 CACACAGTTTGCTATGATCGACA 59.320 43.478 0.00 0.00 0.00 4.35
2531 2592 2.229543 TGGCAAATTCATCAGCTCACAC 59.770 45.455 0.00 0.00 0.00 3.82
2637 2699 2.880268 CAACATGACAGCAAGAACAGGA 59.120 45.455 0.00 0.00 0.00 3.86
2831 3130 2.745968 TGGGGGATAACCATTTCAAGC 58.254 47.619 0.00 0.00 42.91 4.01
3007 3307 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3008 3308 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3009 3309 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3010 3310 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3011 3311 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
3012 3312 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
3013 3313 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
3014 3314 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
3015 3315 5.411669 AGTTTGATGACAAGTATTTCCGGAC 59.588 40.000 1.83 0.00 37.32 4.79
3016 3316 5.411361 CAGTTTGATGACAAGTATTTCCGGA 59.589 40.000 0.00 0.00 37.32 5.14
3017 3317 5.391950 CCAGTTTGATGACAAGTATTTCCGG 60.392 44.000 0.00 0.00 37.32 5.14
3018 3318 5.411361 TCCAGTTTGATGACAAGTATTTCCG 59.589 40.000 0.00 0.00 37.32 4.30
3019 3319 6.817765 TCCAGTTTGATGACAAGTATTTCC 57.182 37.500 0.00 0.00 37.32 3.13
3023 3323 8.960591 CCTTTTATCCAGTTTGATGACAAGTAT 58.039 33.333 0.00 0.00 37.32 2.12
3024 3324 7.393234 CCCTTTTATCCAGTTTGATGACAAGTA 59.607 37.037 0.00 0.00 37.32 2.24
3025 3325 6.209391 CCCTTTTATCCAGTTTGATGACAAGT 59.791 38.462 0.00 0.00 37.32 3.16
3026 3326 6.350445 CCCCTTTTATCCAGTTTGATGACAAG 60.350 42.308 0.00 0.00 37.32 3.16
3027 3327 5.480073 CCCCTTTTATCCAGTTTGATGACAA 59.520 40.000 0.00 0.00 0.00 3.18
3028 3328 5.016173 CCCCTTTTATCCAGTTTGATGACA 58.984 41.667 0.00 0.00 0.00 3.58
3029 3329 5.261216 TCCCCTTTTATCCAGTTTGATGAC 58.739 41.667 0.00 0.00 0.00 3.06
3030 3330 5.528600 TCCCCTTTTATCCAGTTTGATGA 57.471 39.130 0.00 0.00 0.00 2.92
3031 3331 5.658190 ACATCCCCTTTTATCCAGTTTGATG 59.342 40.000 0.00 0.00 33.80 3.07
3032 3332 5.842339 ACATCCCCTTTTATCCAGTTTGAT 58.158 37.500 0.00 0.00 0.00 2.57
3033 3333 5.269554 ACATCCCCTTTTATCCAGTTTGA 57.730 39.130 0.00 0.00 0.00 2.69
3034 3334 7.062957 AGATACATCCCCTTTTATCCAGTTTG 58.937 38.462 0.00 0.00 0.00 2.93
3035 3335 7.226059 AGATACATCCCCTTTTATCCAGTTT 57.774 36.000 0.00 0.00 0.00 2.66
3036 3336 6.848562 AGATACATCCCCTTTTATCCAGTT 57.151 37.500 0.00 0.00 0.00 3.16
3037 3337 7.313731 TCTAGATACATCCCCTTTTATCCAGT 58.686 38.462 0.00 0.00 0.00 4.00
3038 3338 7.798710 TCTAGATACATCCCCTTTTATCCAG 57.201 40.000 0.00 0.00 0.00 3.86
3039 3339 7.739444 ACATCTAGATACATCCCCTTTTATCCA 59.261 37.037 4.54 0.00 0.00 3.41
3040 3340 8.152023 ACATCTAGATACATCCCCTTTTATCC 57.848 38.462 4.54 0.00 0.00 2.59
3047 3347 9.845214 ACTAAAATACATCTAGATACATCCCCT 57.155 33.333 4.54 0.00 0.00 4.79
3071 3371 9.186837 TGGATAAAAAGAGACGTATCTAGAACT 57.813 33.333 14.00 0.00 34.34 3.01
3072 3372 9.968870 ATGGATAAAAAGAGACGTATCTAGAAC 57.031 33.333 14.00 3.69 34.34 3.01
3077 3377 9.667107 TCAAAATGGATAAAAAGAGACGTATCT 57.333 29.630 6.94 6.94 38.15 1.98
3080 3380 9.443323 TCATCAAAATGGATAAAAAGAGACGTA 57.557 29.630 0.00 0.00 33.42 3.57
3081 3381 8.237267 GTCATCAAAATGGATAAAAAGAGACGT 58.763 33.333 0.00 0.00 33.42 4.34
3082 3382 8.236586 TGTCATCAAAATGGATAAAAAGAGACG 58.763 33.333 0.00 0.00 33.42 4.18
3083 3383 9.912634 TTGTCATCAAAATGGATAAAAAGAGAC 57.087 29.630 0.00 0.00 33.42 3.36
3085 3385 9.918630 ACTTGTCATCAAAATGGATAAAAAGAG 57.081 29.630 0.00 0.00 33.42 2.85
3093 3393 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
3094 3394 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
3095 3395 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
3096 3396 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
3097 3397 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
3098 3398 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
3099 3399 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
3100 3400 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
3101 3401 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
3102 3402 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
3103 3403 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
3104 3404 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
3105 3405 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
3106 3406 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
3107 3407 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
3108 3408 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
3109 3409 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
3110 3410 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
3111 3411 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
3112 3412 1.755380 CTACTCCCTCCGTCCGAAAAT 59.245 52.381 0.00 0.00 0.00 1.82
3113 3413 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
3114 3414 1.318158 GCTACTCCCTCCGTCCGAAA 61.318 60.000 0.00 0.00 0.00 3.46
3115 3415 1.751927 GCTACTCCCTCCGTCCGAA 60.752 63.158 0.00 0.00 0.00 4.30
3116 3416 2.124403 GCTACTCCCTCCGTCCGA 60.124 66.667 0.00 0.00 0.00 4.55
3117 3417 2.124236 AGCTACTCCCTCCGTCCG 60.124 66.667 0.00 0.00 0.00 4.79
3118 3418 0.971447 AACAGCTACTCCCTCCGTCC 60.971 60.000 0.00 0.00 0.00 4.79
3119 3419 1.677052 CTAACAGCTACTCCCTCCGTC 59.323 57.143 0.00 0.00 0.00 4.79
3120 3420 1.005687 ACTAACAGCTACTCCCTCCGT 59.994 52.381 0.00 0.00 0.00 4.69
3121 3421 1.765230 ACTAACAGCTACTCCCTCCG 58.235 55.000 0.00 0.00 0.00 4.63
3122 3422 3.131400 CAGAACTAACAGCTACTCCCTCC 59.869 52.174 0.00 0.00 0.00 4.30
3123 3423 3.764972 ACAGAACTAACAGCTACTCCCTC 59.235 47.826 0.00 0.00 0.00 4.30
3124 3424 3.780626 ACAGAACTAACAGCTACTCCCT 58.219 45.455 0.00 0.00 0.00 4.20
3125 3425 4.538746 AACAGAACTAACAGCTACTCCC 57.461 45.455 0.00 0.00 0.00 4.30
3126 3426 6.072064 TCACTAACAGAACTAACAGCTACTCC 60.072 42.308 0.00 0.00 0.00 3.85
3127 3427 6.910995 TCACTAACAGAACTAACAGCTACTC 58.089 40.000 0.00 0.00 0.00 2.59
3128 3428 6.896021 TCACTAACAGAACTAACAGCTACT 57.104 37.500 0.00 0.00 0.00 2.57
3129 3429 9.804758 AATATCACTAACAGAACTAACAGCTAC 57.195 33.333 0.00 0.00 0.00 3.58
3131 3431 9.155975 CAAATATCACTAACAGAACTAACAGCT 57.844 33.333 0.00 0.00 0.00 4.24
3177 3478 2.029380 CCGTTGGAAAATTTGGGACCTC 60.029 50.000 0.00 0.00 0.00 3.85
3192 3493 6.757897 ATATATTATCCATGTTGCCGTTGG 57.242 37.500 0.00 0.00 0.00 3.77
3391 3696 0.815615 GGGGAATCCTTGCTGCGTAG 60.816 60.000 0.00 0.00 0.00 3.51
3414 3719 2.040278 TGAAGCACTAGGGCAACTGATT 59.960 45.455 21.39 2.67 35.83 2.57
3470 3775 5.689819 CCTTAAAACAATGTCAAGGACTCG 58.310 41.667 13.11 0.00 38.42 4.18
3573 3878 5.986878 AGGCAACCTCTGGATACAAACAAAT 60.987 40.000 0.00 0.00 44.13 2.32
3982 4288 4.694037 TGTGACAAGCATCATGAGAAGAAG 59.306 41.667 0.09 0.00 0.00 2.85
4240 4592 6.864342 TCTTATAACTGGAGGAAGAAAGTCG 58.136 40.000 0.00 0.00 0.00 4.18
4270 4622 3.045601 ACTGTGTGAATCCTACAGCAC 57.954 47.619 12.04 0.00 44.22 4.40
4424 4790 1.472480 CGGGTTGGCTCTAAACATTGG 59.528 52.381 0.00 0.00 0.00 3.16
4440 4806 2.259266 ATAACGTTTGTGTTCCGGGT 57.741 45.000 5.91 0.00 33.32 5.28
4442 4808 5.622041 CAGTAAAATAACGTTTGTGTTCCGG 59.378 40.000 5.91 0.00 33.32 5.14
4535 4992 2.042686 TTCATGGGAAATCTGCGGAG 57.957 50.000 0.00 0.00 0.00 4.63
4549 5006 2.160417 GCTTCCACTCCGAACTTTCATG 59.840 50.000 0.00 0.00 0.00 3.07
4670 5127 2.940410 GGAGATAATTTGGGCGTTTCGA 59.060 45.455 0.00 0.00 0.00 3.71
4681 5138 7.068716 GCTACAACCTCAATTGGGAGATAATTT 59.931 37.037 6.97 0.00 37.05 1.82
4759 5216 3.278574 TCACAACTTGGACTTTGAGTGG 58.721 45.455 0.00 0.00 0.00 4.00
4763 5220 8.321353 AGACATATATCACAACTTGGACTTTGA 58.679 33.333 0.00 0.00 0.00 2.69
4872 5329 4.738252 GGTTTCTGTCGTGATTTTTCAACC 59.262 41.667 0.00 0.00 0.00 3.77
4974 5434 4.949238 TGCCTGTAAATTGCATGTCAGTAT 59.051 37.500 0.00 0.00 0.00 2.12
5264 5738 0.529773 GTGCTCCGTCACAACTCACA 60.530 55.000 0.00 0.00 36.97 3.58
5265 5739 0.529773 TGTGCTCCGTCACAACTCAC 60.530 55.000 0.74 0.00 43.27 3.51
5266 5740 1.819905 TGTGCTCCGTCACAACTCA 59.180 52.632 0.74 0.00 43.27 3.41
5267 5741 4.750460 TGTGCTCCGTCACAACTC 57.250 55.556 0.74 0.00 43.27 3.01
5354 5828 1.243342 TTGCCCAACGCTCAATCCTG 61.243 55.000 0.00 0.00 38.78 3.86
5966 6442 5.817816 CCAAGCTATTGTAAGTGAGGTAAGG 59.182 44.000 0.00 0.00 34.39 2.69
6018 6494 6.375455 AGTTCATTCCACCAAGCTATTAACAG 59.625 38.462 0.00 0.00 0.00 3.16
6304 6783 3.663995 TTGTTCATTGAATGGTGCAGG 57.336 42.857 5.20 0.00 0.00 4.85
6639 7118 7.041440 TGTGACAGGTTTAGAACAACATACATG 60.041 37.037 0.00 0.00 0.00 3.21
6656 8043 6.040842 AGTGAAAGCAAAAATATGTGACAGGT 59.959 34.615 0.00 0.00 0.00 4.00
6799 8189 9.066892 GGCATAACTATCAGAATGTAAATTCCA 57.933 33.333 1.75 0.00 37.40 3.53
6825 8215 4.957296 ACTTAACATACCTAAGGCCATCG 58.043 43.478 5.01 0.00 31.76 3.84
6869 8260 4.640201 GCTACACCAAGCTTTGATAATCCA 59.360 41.667 4.25 0.00 39.50 3.41
6934 8327 0.108615 ACGGAGATCGCTCTTTGTGG 60.109 55.000 0.00 0.00 43.89 4.17
6935 8328 1.272781 GACGGAGATCGCTCTTTGTG 58.727 55.000 0.00 0.00 43.89 3.33
7069 8464 1.039068 TTTCATGGGTGCCAACACTG 58.961 50.000 0.00 0.00 46.57 3.66
7073 8468 3.446873 TGATATGTTTCATGGGTGCCAAC 59.553 43.478 0.00 0.00 36.95 3.77
7074 8469 3.706183 TGATATGTTTCATGGGTGCCAA 58.294 40.909 0.00 0.00 36.95 4.52
7150 8553 7.687005 TTTTTAACACGCAAAAGTGGAATAG 57.313 32.000 2.14 0.00 45.80 1.73
7403 8810 8.746052 AGGGAAATAATTCGTTCACAATATCA 57.254 30.769 6.17 0.00 36.36 2.15
7738 9145 5.927281 AAGCCTGCATCATTAAATTCTGT 57.073 34.783 0.00 0.00 0.00 3.41
7739 9146 6.183360 TGGTAAGCCTGCATCATTAAATTCTG 60.183 38.462 0.00 0.00 35.27 3.02
7740 9147 5.893255 TGGTAAGCCTGCATCATTAAATTCT 59.107 36.000 0.00 0.00 35.27 2.40
7741 9148 6.039717 TCTGGTAAGCCTGCATCATTAAATTC 59.960 38.462 0.00 0.00 34.18 2.17
7742 9149 5.893255 TCTGGTAAGCCTGCATCATTAAATT 59.107 36.000 0.00 0.00 34.18 1.82
7743 9150 5.448654 TCTGGTAAGCCTGCATCATTAAAT 58.551 37.500 0.00 0.00 34.18 1.40
7888 9302 2.222819 CGAAGTGCTCCGCTATGTTTTC 60.223 50.000 0.00 0.00 0.00 2.29
8125 10017 6.491403 CCAAATAAAGCCTGCCAGATAACTAT 59.509 38.462 0.00 0.00 0.00 2.12
8136 10028 1.758862 AGGATGCCAAATAAAGCCTGC 59.241 47.619 0.00 0.00 0.00 4.85
8525 10458 9.581099 ACACACTTAAAAATACAAAAGGAAGTG 57.419 29.630 9.29 9.29 45.05 3.16
8553 10486 7.985634 AAACACAGTATTGTTCAAATGTCAC 57.014 32.000 0.00 0.00 38.82 3.67
8564 10497 9.295825 TGGAGAATATGAAAAACACAGTATTGT 57.704 29.630 0.00 0.00 38.31 2.71
8569 10502 6.207417 CCACTGGAGAATATGAAAAACACAGT 59.793 38.462 0.00 0.00 36.03 3.55
8651 10584 5.523188 CAGATGAAGTATCAGCAAACTCCTC 59.477 44.000 0.00 0.00 44.44 3.71
8652 10585 5.426504 CAGATGAAGTATCAGCAAACTCCT 58.573 41.667 0.00 0.00 44.44 3.69
8653 10586 4.574013 CCAGATGAAGTATCAGCAAACTCC 59.426 45.833 0.00 0.00 44.44 3.85
8897 10834 6.703607 TGCTACTACTATCCGAACACTACTAC 59.296 42.308 0.00 0.00 0.00 2.73
9000 10938 1.681264 GAAAGGGTTTGGGATATGCCG 59.319 52.381 8.92 0.00 37.63 5.69
9015 10953 2.812011 CTTGTAGTCAAACCCCGAAAGG 59.188 50.000 0.00 0.00 41.38 3.11
9122 11179 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
9123 11180 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
9124 11181 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
9125 11182 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
9126 11183 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
9127 11184 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
9128 11185 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
9129 11186 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
9130 11187 1.274596 CCGACAAGTATTTCCGGACG 58.725 55.000 1.83 0.00 42.49 4.79
9131 11188 1.648504 CCCGACAAGTATTTCCGGAC 58.351 55.000 1.83 0.00 42.49 4.79
9132 11189 0.538118 CCCCGACAAGTATTTCCGGA 59.462 55.000 0.00 0.00 42.49 5.14
9133 11190 0.538118 TCCCCGACAAGTATTTCCGG 59.462 55.000 0.00 0.00 39.85 5.14
9134 11191 2.389962 TTCCCCGACAAGTATTTCCG 57.610 50.000 0.00 0.00 0.00 4.30
9135 11192 3.380320 CCATTTCCCCGACAAGTATTTCC 59.620 47.826 0.00 0.00 0.00 3.13
9136 11193 4.266714 TCCATTTCCCCGACAAGTATTTC 58.733 43.478 0.00 0.00 0.00 2.17
9137 11194 4.310022 TCCATTTCCCCGACAAGTATTT 57.690 40.909 0.00 0.00 0.00 1.40
9138 11195 4.207165 CATCCATTTCCCCGACAAGTATT 58.793 43.478 0.00 0.00 0.00 1.89
9139 11196 3.202151 ACATCCATTTCCCCGACAAGTAT 59.798 43.478 0.00 0.00 0.00 2.12
9140 11197 2.574369 ACATCCATTTCCCCGACAAGTA 59.426 45.455 0.00 0.00 0.00 2.24
9141 11198 1.354368 ACATCCATTTCCCCGACAAGT 59.646 47.619 0.00 0.00 0.00 3.16
9142 11199 2.128771 ACATCCATTTCCCCGACAAG 57.871 50.000 0.00 0.00 0.00 3.16
9143 11200 3.458118 AGATACATCCATTTCCCCGACAA 59.542 43.478 0.00 0.00 0.00 3.18
9144 11201 3.045634 AGATACATCCATTTCCCCGACA 58.954 45.455 0.00 0.00 0.00 4.35
9145 11202 3.771577 AGATACATCCATTTCCCCGAC 57.228 47.619 0.00 0.00 0.00 4.79
9146 11203 4.527038 GTCTAGATACATCCATTTCCCCGA 59.473 45.833 0.00 0.00 0.00 5.14
9147 11204 4.618460 CGTCTAGATACATCCATTTCCCCG 60.618 50.000 0.00 0.00 0.00 5.73
9148 11205 4.283722 ACGTCTAGATACATCCATTTCCCC 59.716 45.833 0.00 0.00 0.00 4.81
9149 11206 5.470047 ACGTCTAGATACATCCATTTCCC 57.530 43.478 0.00 0.00 0.00 3.97
9150 11207 9.490379 AAAATACGTCTAGATACATCCATTTCC 57.510 33.333 0.00 0.00 0.00 3.13
9188 11245 5.163012 ACTCCCTCCGTCCAGAAATACTATA 60.163 44.000 0.00 0.00 0.00 1.31
9199 11280 1.000019 CAGGTACTCCCTCCGTCCA 60.000 63.158 0.00 0.00 43.86 4.02
9227 11308 6.071984 CCTACTCTCACCTGTCCAGTATAAT 58.928 44.000 0.00 0.00 0.00 1.28
9319 11401 2.159430 CGAGTCATTTTCATTCCGTGCA 59.841 45.455 0.00 0.00 0.00 4.57
9337 11419 7.706281 ATGAATCTAGCAAATTACTCACGAG 57.294 36.000 0.00 0.00 0.00 4.18
9420 11503 1.335496 TGCTTCAAAACCTACGCAACC 59.665 47.619 0.00 0.00 0.00 3.77
9449 11532 0.381801 ACAAAGCAAGTCGTTGGCAG 59.618 50.000 0.00 0.00 38.27 4.85
9467 11550 5.339990 ACACAACATCTTGTTTGCACTTAC 58.660 37.500 0.00 0.00 38.77 2.34
9513 11653 5.349817 CCTAGTTGAGCTTGTTAGTGATGTG 59.650 44.000 0.00 0.00 0.00 3.21
9528 11668 4.363999 CTCCGCAAAGTATCCTAGTTGAG 58.636 47.826 0.00 0.00 0.00 3.02
9589 11729 2.339769 CTTGCTAGGGCCTAGGGTTAT 58.660 52.381 35.37 2.61 34.88 1.89
9592 11732 2.073101 GCTTGCTAGGGCCTAGGGT 61.073 63.158 35.37 5.00 34.88 4.34
9606 11746 1.514678 TAAGGTGGCACGCAAGCTTG 61.515 55.000 22.44 22.44 43.02 4.01
9607 11747 0.609131 ATAAGGTGGCACGCAAGCTT 60.609 50.000 14.77 14.77 43.02 3.74
9609 11749 0.179163 GAATAAGGTGGCACGCAAGC 60.179 55.000 12.17 0.00 43.02 4.01
9610 11750 0.451783 GGAATAAGGTGGCACGCAAG 59.548 55.000 12.17 0.00 43.02 4.01
9611 11751 0.963355 GGGAATAAGGTGGCACGCAA 60.963 55.000 12.17 0.00 43.02 4.85
9612 11752 1.377987 GGGAATAAGGTGGCACGCA 60.378 57.895 12.17 0.00 43.02 5.24
9613 11753 0.679960 AAGGGAATAAGGTGGCACGC 60.680 55.000 12.17 4.74 38.67 5.34
9614 11754 1.379527 GAAGGGAATAAGGTGGCACG 58.620 55.000 12.17 0.00 0.00 5.34
9615 11755 1.685180 GGGAAGGGAATAAGGTGGCAC 60.685 57.143 9.70 9.70 0.00 5.01
9640 11780 7.148722 GCGTCCTTATTCTATTATTCTCACTGC 60.149 40.741 0.00 0.00 0.00 4.40
9664 11804 1.146263 GGGAGGTTGATACCCTGCG 59.854 63.158 0.00 0.00 46.28 5.18
9665 11805 1.532238 GGGGAGGTTGATACCCTGC 59.468 63.158 0.00 0.00 46.28 4.85
9711 11851 9.195411 TGCTCAAATGTGATCTTTGAATTTAAC 57.805 29.630 9.21 0.00 40.89 2.01
9713 11853 7.814107 GGTGCTCAAATGTGATCTTTGAATTTA 59.186 33.333 9.21 0.00 40.89 1.40
9728 11868 1.252904 CCAGTGGGGGTGCTCAAATG 61.253 60.000 0.00 0.00 0.00 2.32
9734 11874 3.252284 CAGACCAGTGGGGGTGCT 61.252 66.667 15.21 0.00 42.53 4.40
9738 11878 3.036429 GCTAGCAGACCAGTGGGGG 62.036 68.421 15.21 3.24 42.91 5.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.