Multiple sequence alignment - TraesCS5B01G160600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G160600 chr5B 100.000 7532 0 0 810 8341 295653142 295660673 0.000000e+00 13910.0
1 TraesCS5B01G160600 chr5B 100.000 598 0 0 1 598 295652333 295652930 0.000000e+00 1105.0
2 TraesCS5B01G160600 chr5B 93.684 95 6 0 8247 8341 693583798 693583892 8.730000e-30 143.0
3 TraesCS5B01G160600 chr5A 97.922 4620 88 8 847 5460 349633681 349629064 0.000000e+00 7993.0
4 TraesCS5B01G160600 chr5A 95.872 1090 30 7 5479 6565 349629004 349627927 0.000000e+00 1749.0
5 TraesCS5B01G160600 chr5A 96.793 842 18 2 7411 8251 349627151 349626318 0.000000e+00 1397.0
6 TraesCS5B01G160600 chr5A 97.285 663 16 2 6705 7367 349627797 349627137 0.000000e+00 1123.0
7 TraesCS5B01G160600 chr5D 97.228 4618 97 10 847 5458 263153991 263158583 0.000000e+00 7790.0
8 TraesCS5B01G160600 chr5D 96.688 1087 20 4 5479 6565 263158644 263159714 0.000000e+00 1794.0
9 TraesCS5B01G160600 chr5D 96.923 845 22 3 7411 8251 263160527 263161371 0.000000e+00 1413.0
10 TraesCS5B01G160600 chr5D 95.409 806 15 3 6566 7367 263159754 263160541 0.000000e+00 1264.0
11 TraesCS5B01G160600 chr5D 93.137 204 12 2 1 202 521222236 521222033 1.760000e-76 298.0
12 TraesCS5B01G160600 chr5D 92.381 210 12 4 1 209 494209111 494209317 6.330000e-76 296.0
13 TraesCS5B01G160600 chr5D 100.000 35 0 0 810 844 403146459 403146425 1.940000e-06 65.8
14 TraesCS5B01G160600 chr3A 88.747 391 38 6 201 587 129488683 129488295 2.720000e-129 473.0
15 TraesCS5B01G160600 chr3A 94.231 52 2 1 7369 7420 580623940 580623990 2.500000e-10 78.7
16 TraesCS5B01G160600 chr3A 100.000 34 0 0 810 843 546394477 546394444 6.990000e-06 63.9
17 TraesCS5B01G160600 chr2A 84.848 396 39 11 201 592 771797118 771797496 6.110000e-101 379.0
18 TraesCS5B01G160600 chr7D 83.871 403 39 17 201 592 168493469 168493856 2.210000e-95 361.0
19 TraesCS5B01G160600 chr7D 96.552 87 3 0 8250 8336 632327989 632327903 2.430000e-30 145.0
20 TraesCS5B01G160600 chr2B 93.069 202 13 1 1 201 221101422 221101623 2.280000e-75 294.0
21 TraesCS5B01G160600 chr2B 90.741 216 16 4 4 217 672608532 672608319 1.370000e-72 285.0
22 TraesCS5B01G160600 chr2B 89.529 191 12 3 368 557 110829638 110829455 1.400000e-57 235.0
23 TraesCS5B01G160600 chr2B 92.121 165 11 2 201 365 110829920 110829758 1.810000e-56 231.0
24 TraesCS5B01G160600 chr2B 94.444 54 2 1 7367 7420 547776111 547776059 1.930000e-11 82.4
25 TraesCS5B01G160600 chr2B 92.308 52 3 1 7366 7417 462889216 462889166 1.160000e-08 73.1
26 TraesCS5B01G160600 chr2B 90.741 54 4 1 7367 7420 738842866 738842814 4.180000e-08 71.3
27 TraesCS5B01G160600 chr7B 91.827 208 16 1 4 210 10065223 10065016 1.060000e-73 289.0
28 TraesCS5B01G160600 chr7B 92.118 203 15 1 1 202 684293394 684293596 1.370000e-72 285.0
29 TraesCS5B01G160600 chr7B 93.750 48 3 0 7363 7410 152796066 152796113 1.160000e-08 73.1
30 TraesCS5B01G160600 chr7B 100.000 34 0 0 811 844 74673844 74673877 6.990000e-06 63.9
31 TraesCS5B01G160600 chr7B 97.143 35 1 0 810 844 733705851 733705885 9.040000e-05 60.2
32 TraesCS5B01G160600 chr7B 87.500 48 5 1 810 856 705733494 705733541 4.000000e-03 54.7
33 TraesCS5B01G160600 chr3B 92.929 198 13 1 4 200 24022981 24022784 3.810000e-73 287.0
34 TraesCS5B01G160600 chr3B 92.708 96 7 0 8246 8341 441456142 441456237 1.130000e-28 139.0
35 TraesCS5B01G160600 chr3B 94.545 55 3 0 7366 7420 325846613 325846559 1.490000e-12 86.1
36 TraesCS5B01G160600 chr3B 100.000 35 0 0 810 844 820509436 820509402 1.940000e-06 65.8
37 TraesCS5B01G160600 chr6B 91.748 206 16 1 1 205 686383064 686383269 1.370000e-72 285.0
38 TraesCS5B01G160600 chr6B 96.000 50 1 1 7871 7919 662099919 662099870 6.940000e-11 80.5
39 TraesCS5B01G160600 chr4D 91.038 212 15 4 1 209 385698959 385699169 4.930000e-72 283.0
40 TraesCS5B01G160600 chr4D 94.565 92 5 0 8250 8341 323929670 323929579 8.730000e-30 143.0
41 TraesCS5B01G160600 chr7A 85.484 248 29 5 201 446 126859488 126859730 1.390000e-62 252.0
42 TraesCS5B01G160600 chr7A 95.652 92 4 0 8250 8341 735412103 735412194 1.880000e-31 148.0
43 TraesCS5B01G160600 chr1B 93.684 95 6 0 8247 8341 56752492 56752398 8.730000e-30 143.0
44 TraesCS5B01G160600 chr1B 92.708 96 7 0 8246 8341 359902149 359902054 1.130000e-28 139.0
45 TraesCS5B01G160600 chr1B 98.246 57 1 0 199 255 564561866 564561922 5.330000e-17 100.0
46 TraesCS5B01G160600 chr1B 94.340 53 2 1 7368 7420 10110112 10110163 6.940000e-11 80.5
47 TraesCS5B01G160600 chr1B 94.118 51 2 1 7370 7420 134623928 134623879 8.980000e-10 76.8
48 TraesCS5B01G160600 chr4B 94.505 91 5 0 8251 8341 31518069 31517979 3.140000e-29 141.0
49 TraesCS5B01G160600 chr2D 91.089 101 9 0 8241 8341 445894874 445894974 4.060000e-28 137.0
50 TraesCS5B01G160600 chr6D 98.039 51 0 1 7871 7920 437333756 437333706 4.150000e-13 87.9
51 TraesCS5B01G160600 chr6D 94.231 52 2 1 7369 7420 130179760 130179710 2.500000e-10 78.7
52 TraesCS5B01G160600 chr6D 90.909 55 2 3 7870 7922 193235877 193235824 4.180000e-08 71.3
53 TraesCS5B01G160600 chr6D 100.000 34 0 0 811 844 22113913 22113880 6.990000e-06 63.9
54 TraesCS5B01G160600 chr6A 91.379 58 2 3 7870 7925 299316298 299316242 8.980000e-10 76.8
55 TraesCS5B01G160600 chrUn 100.000 35 0 0 810 844 310738458 310738424 1.940000e-06 65.8
56 TraesCS5B01G160600 chr1D 100.000 34 0 0 811 844 66767559 66767526 6.990000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G160600 chr5B 295652333 295660673 8340 False 7507.50 13910 100.000 1 8341 2 chr5B.!!$F2 8340
1 TraesCS5B01G160600 chr5A 349626318 349633681 7363 True 3065.50 7993 96.968 847 8251 4 chr5A.!!$R1 7404
2 TraesCS5B01G160600 chr5D 263153991 263161371 7380 False 3065.25 7790 96.562 847 8251 4 chr5D.!!$F2 7404

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
537 538 0.041488 GAGCGCGTGTAGCTATACGT 60.041 55.000 33.86 20.64 46.13 3.57 F
1720 1722 0.178932 GGGGAAAAGGGAAGGCTTGT 60.179 55.000 3.46 0.00 0.00 3.16 F
3076 3078 0.178970 ATACTAGTCGTGGCGGGGAT 60.179 55.000 0.00 0.00 0.00 3.85 F
3155 3157 0.374758 ACAGAAACGCGCATATGCTG 59.625 50.000 24.56 18.55 39.32 4.41 F
3262 3264 0.498927 CGATAAACGTAGCTCGCTGC 59.501 55.000 0.85 0.00 44.19 5.25 F
4063 4065 0.475906 GAATGGAGATGTGGGAGGGG 59.524 60.000 0.00 0.00 0.00 4.79 F
4087 4089 7.208080 GGATAGAATACTTGCGACTAAAAGGA 58.792 38.462 0.00 0.00 0.00 3.36 F
5565 5614 3.782992 ACCCTTTCCAATCAAGCATCTT 58.217 40.909 0.00 0.00 0.00 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2254 2256 0.587768 CTGCATTGCACTCGTCAACA 59.412 50.000 7.38 0.0 33.79 3.33 R
3274 3276 0.108945 GAAGCATTGCCTTCAGGTGC 60.109 55.000 4.70 0.0 40.67 5.01 R
3952 3954 1.009829 CTCCATAACGCCAAGACAGC 58.990 55.000 0.00 0.0 0.00 4.40 R
3969 3971 4.509600 GCATGTCTACCTTACAAGCATCTC 59.490 45.833 0.00 0.0 40.36 2.75 R
5077 5084 5.582269 TCTTGAAGCTCAATCCTGAATAACG 59.418 40.000 0.00 0.0 35.59 3.18 R
5565 5614 0.106619 GCGAGGAAGTCTAGAGGGGA 60.107 60.000 0.00 0.0 0.00 4.81 R
5665 5714 1.198713 CACCTCCAGTGCTAGTGGAT 58.801 55.000 11.59 0.0 45.99 3.41 R
7393 7490 0.319641 TGCAATGCAATGAAGCGCAA 60.320 45.000 11.47 0.0 42.37 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.685139 TCGAATCCTCTTTCAAGCACT 57.315 42.857 0.00 0.00 0.00 4.40
22 23 4.008074 TCGAATCCTCTTTCAAGCACTT 57.992 40.909 0.00 0.00 0.00 3.16
23 24 4.389374 TCGAATCCTCTTTCAAGCACTTT 58.611 39.130 0.00 0.00 0.00 2.66
24 25 4.821805 TCGAATCCTCTTTCAAGCACTTTT 59.178 37.500 0.00 0.00 0.00 2.27
25 26 5.995282 TCGAATCCTCTTTCAAGCACTTTTA 59.005 36.000 0.00 0.00 0.00 1.52
26 27 6.655003 TCGAATCCTCTTTCAAGCACTTTTAT 59.345 34.615 0.00 0.00 0.00 1.40
27 28 7.174946 TCGAATCCTCTTTCAAGCACTTTTATT 59.825 33.333 0.00 0.00 0.00 1.40
28 29 7.809806 CGAATCCTCTTTCAAGCACTTTTATTT 59.190 33.333 0.00 0.00 0.00 1.40
29 30 9.481340 GAATCCTCTTTCAAGCACTTTTATTTT 57.519 29.630 0.00 0.00 0.00 1.82
82 83 5.560966 AAAACCACTAGCGATTTACCATG 57.439 39.130 0.00 0.00 0.00 3.66
83 84 3.194005 ACCACTAGCGATTTACCATGG 57.806 47.619 11.19 11.19 0.00 3.66
84 85 2.504175 ACCACTAGCGATTTACCATGGT 59.496 45.455 23.55 23.55 34.36 3.55
85 86 3.054655 ACCACTAGCGATTTACCATGGTT 60.055 43.478 25.38 4.60 35.70 3.67
86 87 3.945285 CCACTAGCGATTTACCATGGTTT 59.055 43.478 25.38 8.64 0.00 3.27
87 88 4.398044 CCACTAGCGATTTACCATGGTTTT 59.602 41.667 25.38 8.24 0.00 2.43
88 89 5.105917 CCACTAGCGATTTACCATGGTTTTT 60.106 40.000 25.38 7.83 0.00 1.94
89 90 5.799936 CACTAGCGATTTACCATGGTTTTTG 59.200 40.000 25.38 12.83 0.00 2.44
90 91 5.708230 ACTAGCGATTTACCATGGTTTTTGA 59.292 36.000 25.38 0.21 0.00 2.69
91 92 5.059404 AGCGATTTACCATGGTTTTTGAG 57.941 39.130 25.38 11.71 0.00 3.02
92 93 4.764823 AGCGATTTACCATGGTTTTTGAGA 59.235 37.500 25.38 0.00 0.00 3.27
93 94 5.242838 AGCGATTTACCATGGTTTTTGAGAA 59.757 36.000 25.38 6.27 0.00 2.87
94 95 5.923684 GCGATTTACCATGGTTTTTGAGAAA 59.076 36.000 25.38 15.61 0.00 2.52
95 96 6.422400 GCGATTTACCATGGTTTTTGAGAAAA 59.578 34.615 25.38 14.85 32.53 2.29
96 97 7.359181 GCGATTTACCATGGTTTTTGAGAAAAG 60.359 37.037 25.38 13.85 35.53 2.27
97 98 7.116233 CGATTTACCATGGTTTTTGAGAAAAGG 59.884 37.037 25.38 7.81 35.53 3.11
98 99 7.425224 TTTACCATGGTTTTTGAGAAAAGGA 57.575 32.000 25.38 0.00 35.53 3.36
99 100 5.948742 ACCATGGTTTTTGAGAAAAGGAA 57.051 34.783 13.00 0.00 35.53 3.36
100 101 6.306643 ACCATGGTTTTTGAGAAAAGGAAA 57.693 33.333 13.00 0.00 35.53 3.13
101 102 6.716284 ACCATGGTTTTTGAGAAAAGGAAAA 58.284 32.000 13.00 0.00 35.53 2.29
102 103 7.171653 ACCATGGTTTTTGAGAAAAGGAAAAA 58.828 30.769 13.00 0.00 35.53 1.94
103 104 7.833682 ACCATGGTTTTTGAGAAAAGGAAAAAT 59.166 29.630 13.00 0.00 35.53 1.82
104 105 9.336171 CCATGGTTTTTGAGAAAAGGAAAAATA 57.664 29.630 2.57 0.00 35.53 1.40
117 118 9.745323 GAAAAGGAAAAATATCAATGAAAAGCG 57.255 29.630 0.00 0.00 0.00 4.68
118 119 9.487790 AAAAGGAAAAATATCAATGAAAAGCGA 57.512 25.926 0.00 0.00 0.00 4.93
119 120 8.693542 AAGGAAAAATATCAATGAAAAGCGAG 57.306 30.769 0.00 0.00 0.00 5.03
120 121 6.753744 AGGAAAAATATCAATGAAAAGCGAGC 59.246 34.615 0.00 0.00 0.00 5.03
121 122 6.753744 GGAAAAATATCAATGAAAAGCGAGCT 59.246 34.615 0.00 0.00 0.00 4.09
122 123 7.253883 GGAAAAATATCAATGAAAAGCGAGCTG 60.254 37.037 0.00 0.00 0.00 4.24
123 124 4.825546 ATATCAATGAAAAGCGAGCTGG 57.174 40.909 0.00 0.00 0.00 4.85
124 125 2.183478 TCAATGAAAAGCGAGCTGGA 57.817 45.000 0.00 0.00 0.00 3.86
125 126 2.503331 TCAATGAAAAGCGAGCTGGAA 58.497 42.857 0.00 0.00 0.00 3.53
126 127 2.884012 TCAATGAAAAGCGAGCTGGAAA 59.116 40.909 0.00 0.00 0.00 3.13
127 128 3.058016 TCAATGAAAAGCGAGCTGGAAAG 60.058 43.478 0.00 0.00 0.00 2.62
128 129 2.254546 TGAAAAGCGAGCTGGAAAGA 57.745 45.000 0.00 0.00 0.00 2.52
129 130 2.783135 TGAAAAGCGAGCTGGAAAGAT 58.217 42.857 0.00 0.00 0.00 2.40
130 131 3.937814 TGAAAAGCGAGCTGGAAAGATA 58.062 40.909 0.00 0.00 0.00 1.98
131 132 3.935203 TGAAAAGCGAGCTGGAAAGATAG 59.065 43.478 0.00 0.00 0.00 2.08
132 133 1.946745 AAGCGAGCTGGAAAGATAGC 58.053 50.000 0.00 0.00 40.18 2.97
133 134 0.249238 AGCGAGCTGGAAAGATAGCG 60.249 55.000 0.00 0.00 44.43 4.26
134 135 0.249073 GCGAGCTGGAAAGATAGCGA 60.249 55.000 0.00 0.00 44.43 4.93
135 136 1.604185 GCGAGCTGGAAAGATAGCGAT 60.604 52.381 0.00 0.00 44.43 4.58
136 137 2.323959 CGAGCTGGAAAGATAGCGATC 58.676 52.381 0.00 0.00 44.43 3.69
137 138 2.287849 CGAGCTGGAAAGATAGCGATCA 60.288 50.000 9.61 0.00 44.43 2.92
138 139 3.056304 GAGCTGGAAAGATAGCGATCAC 58.944 50.000 9.61 0.61 44.43 3.06
139 140 2.432146 AGCTGGAAAGATAGCGATCACA 59.568 45.455 9.61 2.20 44.43 3.58
140 141 3.070734 AGCTGGAAAGATAGCGATCACAT 59.929 43.478 9.61 0.00 44.43 3.21
141 142 4.281941 AGCTGGAAAGATAGCGATCACATA 59.718 41.667 9.61 0.00 44.43 2.29
142 143 4.624882 GCTGGAAAGATAGCGATCACATAG 59.375 45.833 9.61 2.47 34.17 2.23
143 144 5.139435 TGGAAAGATAGCGATCACATAGG 57.861 43.478 9.61 0.00 34.17 2.57
144 145 4.832823 TGGAAAGATAGCGATCACATAGGA 59.167 41.667 9.61 0.00 34.17 2.94
145 146 5.304357 TGGAAAGATAGCGATCACATAGGAA 59.696 40.000 9.61 0.00 34.17 3.36
146 147 5.635700 GGAAAGATAGCGATCACATAGGAAC 59.364 44.000 9.61 0.00 34.17 3.62
147 148 6.412362 AAAGATAGCGATCACATAGGAACT 57.588 37.500 9.61 0.00 37.16 3.01
148 149 7.309255 GGAAAGATAGCGATCACATAGGAACTA 60.309 40.741 9.61 0.00 39.00 2.24
149 150 6.751514 AGATAGCGATCACATAGGAACTAG 57.248 41.667 9.61 0.00 38.38 2.57
150 151 6.242396 AGATAGCGATCACATAGGAACTAGT 58.758 40.000 9.61 0.00 38.38 2.57
151 152 6.373216 AGATAGCGATCACATAGGAACTAGTC 59.627 42.308 9.61 0.00 38.38 2.59
152 153 6.673556 GATAGCGATCACATAGGAACTAGTCG 60.674 46.154 1.46 0.00 36.80 4.18
153 154 8.952713 GATAGCGATCACATAGGAACTAGTCGT 61.953 44.444 1.46 0.00 36.80 4.34
158 159 3.556817 TAGGAACTAGTCGTGCGGA 57.443 52.632 0.00 0.00 41.75 5.54
159 160 2.048444 TAGGAACTAGTCGTGCGGAT 57.952 50.000 0.00 0.00 41.75 4.18
160 161 0.739561 AGGAACTAGTCGTGCGGATC 59.260 55.000 0.00 0.00 36.02 3.36
161 162 0.739561 GGAACTAGTCGTGCGGATCT 59.260 55.000 0.00 0.00 0.00 2.75
162 163 1.534175 GGAACTAGTCGTGCGGATCTG 60.534 57.143 0.00 0.00 0.00 2.90
163 164 1.132643 GAACTAGTCGTGCGGATCTGT 59.867 52.381 2.89 0.00 0.00 3.41
164 165 0.733729 ACTAGTCGTGCGGATCTGTC 59.266 55.000 2.89 0.00 0.00 3.51
165 166 0.316278 CTAGTCGTGCGGATCTGTCG 60.316 60.000 2.89 8.89 0.00 4.35
172 173 4.303853 CGGATCTGTCGCTAACGG 57.696 61.111 0.00 0.00 40.63 4.44
173 174 1.944676 CGGATCTGTCGCTAACGGC 60.945 63.158 0.00 0.00 46.48 5.68
174 175 1.591863 GGATCTGTCGCTAACGGCC 60.592 63.158 0.00 0.00 45.45 6.13
175 176 1.141019 GATCTGTCGCTAACGGCCA 59.859 57.895 2.24 0.00 45.45 5.36
176 177 0.872021 GATCTGTCGCTAACGGCCAG 60.872 60.000 2.24 0.00 45.45 4.85
177 178 1.605058 ATCTGTCGCTAACGGCCAGT 61.605 55.000 2.24 0.00 45.45 4.00
178 179 1.805945 CTGTCGCTAACGGCCAGTC 60.806 63.158 2.24 0.00 45.45 3.51
179 180 2.879462 GTCGCTAACGGCCAGTCG 60.879 66.667 2.24 2.38 38.18 4.18
180 181 3.057548 TCGCTAACGGCCAGTCGA 61.058 61.111 2.24 4.82 40.63 4.20
181 182 2.879462 CGCTAACGGCCAGTCGAC 60.879 66.667 7.70 7.70 37.74 4.20
182 183 2.572284 GCTAACGGCCAGTCGACT 59.428 61.111 13.58 13.58 34.27 4.18
183 184 1.805254 GCTAACGGCCAGTCGACTA 59.195 57.895 19.57 0.00 34.27 2.59
184 185 0.248539 GCTAACGGCCAGTCGACTAG 60.249 60.000 19.57 12.85 34.27 2.57
185 186 1.093159 CTAACGGCCAGTCGACTAGT 58.907 55.000 19.57 12.96 0.00 2.57
186 187 1.063764 CTAACGGCCAGTCGACTAGTC 59.936 57.143 19.57 12.22 0.00 2.59
199 200 4.131202 CGACTAGTCGTTAGCATAGTCC 57.869 50.000 32.24 0.00 46.99 3.85
200 201 3.558829 CGACTAGTCGTTAGCATAGTCCA 59.441 47.826 32.24 0.00 46.99 4.02
201 202 4.213694 CGACTAGTCGTTAGCATAGTCCAT 59.786 45.833 32.24 0.00 46.99 3.41
202 203 5.277876 CGACTAGTCGTTAGCATAGTCCATT 60.278 44.000 32.24 0.00 46.99 3.16
203 204 6.466885 ACTAGTCGTTAGCATAGTCCATTT 57.533 37.500 0.00 0.00 32.25 2.32
204 205 6.505272 ACTAGTCGTTAGCATAGTCCATTTC 58.495 40.000 0.00 0.00 32.25 2.17
205 206 5.339008 AGTCGTTAGCATAGTCCATTTCA 57.661 39.130 0.00 0.00 0.00 2.69
206 207 5.730550 AGTCGTTAGCATAGTCCATTTCAA 58.269 37.500 0.00 0.00 0.00 2.69
207 208 6.349300 AGTCGTTAGCATAGTCCATTTCAAT 58.651 36.000 0.00 0.00 0.00 2.57
208 209 7.497595 AGTCGTTAGCATAGTCCATTTCAATA 58.502 34.615 0.00 0.00 0.00 1.90
209 210 7.985184 AGTCGTTAGCATAGTCCATTTCAATAA 59.015 33.333 0.00 0.00 0.00 1.40
210 211 8.774586 GTCGTTAGCATAGTCCATTTCAATAAT 58.225 33.333 0.00 0.00 0.00 1.28
211 212 9.337396 TCGTTAGCATAGTCCATTTCAATAATT 57.663 29.630 0.00 0.00 0.00 1.40
212 213 9.385902 CGTTAGCATAGTCCATTTCAATAATTG 57.614 33.333 0.00 0.00 0.00 2.32
216 217 8.970020 AGCATAGTCCATTTCAATAATTGTTCA 58.030 29.630 0.00 0.00 0.00 3.18
217 218 9.023967 GCATAGTCCATTTCAATAATTGTTCAC 57.976 33.333 0.00 0.00 0.00 3.18
236 237 9.605275 TTGTTCACATTTTCCAAATAATGTTCA 57.395 25.926 0.00 0.00 41.65 3.18
237 238 9.258826 TGTTCACATTTTCCAAATAATGTTCAG 57.741 29.630 0.00 0.00 41.65 3.02
238 239 9.474920 GTTCACATTTTCCAAATAATGTTCAGA 57.525 29.630 0.00 0.00 41.65 3.27
301 302 9.224267 TGTTCACATTTTTCAAAGAAAATTGGA 57.776 25.926 21.30 15.68 37.17 3.53
393 394 6.648879 TTTACATTTGTTCCCTTTCTCAGG 57.351 37.500 0.00 0.00 43.49 3.86
416 417 4.948341 AAAAATAAAGTTCCCTGCCGTT 57.052 36.364 0.00 0.00 0.00 4.44
417 418 4.514781 AAAATAAAGTTCCCTGCCGTTC 57.485 40.909 0.00 0.00 0.00 3.95
418 419 1.734163 ATAAAGTTCCCTGCCGTTCG 58.266 50.000 0.00 0.00 0.00 3.95
419 420 0.952010 TAAAGTTCCCTGCCGTTCGC 60.952 55.000 0.00 0.00 38.31 4.70
420 421 2.676163 AAAGTTCCCTGCCGTTCGCT 62.676 55.000 0.00 0.00 38.78 4.93
421 422 3.119096 GTTCCCTGCCGTTCGCTC 61.119 66.667 0.00 0.00 38.78 5.03
422 423 4.735132 TTCCCTGCCGTTCGCTCG 62.735 66.667 0.00 0.00 38.78 5.03
424 425 4.124351 CCCTGCCGTTCGCTCGTA 62.124 66.667 0.00 0.00 38.78 3.43
425 426 2.879462 CCTGCCGTTCGCTCGTAC 60.879 66.667 0.00 0.00 38.78 3.67
426 427 3.238241 CTGCCGTTCGCTCGTACG 61.238 66.667 9.53 9.53 38.78 3.67
427 428 3.940975 CTGCCGTTCGCTCGTACGT 62.941 63.158 16.05 0.00 37.23 3.57
428 429 3.530104 GCCGTTCGCTCGTACGTG 61.530 66.667 16.05 14.31 37.23 4.49
429 430 3.530104 CCGTTCGCTCGTACGTGC 61.530 66.667 27.52 27.52 37.23 5.34
430 431 2.797850 CGTTCGCTCGTACGTGCA 60.798 61.111 33.35 21.31 34.90 4.57
431 432 2.359040 CGTTCGCTCGTACGTGCAA 61.359 57.895 33.35 24.68 34.90 4.08
432 433 1.847975 GTTCGCTCGTACGTGCAAA 59.152 52.632 33.35 23.69 34.68 3.68
433 434 0.179282 GTTCGCTCGTACGTGCAAAG 60.179 55.000 33.35 21.30 34.68 2.77
434 435 1.882682 TTCGCTCGTACGTGCAAAGC 61.883 55.000 33.35 24.19 34.68 3.51
435 436 2.372690 CGCTCGTACGTGCAAAGCT 61.373 57.895 33.35 0.00 34.68 3.74
436 437 1.068832 CGCTCGTACGTGCAAAGCTA 61.069 55.000 33.35 5.34 34.68 3.32
437 438 0.640768 GCTCGTACGTGCAAAGCTAG 59.359 55.000 30.98 12.91 35.06 3.42
438 439 0.640768 CTCGTACGTGCAAAGCTAGC 59.359 55.000 16.05 6.62 0.00 3.42
439 440 0.734942 TCGTACGTGCAAAGCTAGCC 60.735 55.000 16.05 0.00 0.00 3.93
440 441 0.736325 CGTACGTGCAAAGCTAGCCT 60.736 55.000 12.13 0.00 0.00 4.58
441 442 1.439679 GTACGTGCAAAGCTAGCCTT 58.560 50.000 12.13 0.71 34.51 4.35
442 443 2.613691 GTACGTGCAAAGCTAGCCTTA 58.386 47.619 12.13 0.00 32.20 2.69
443 444 2.178912 ACGTGCAAAGCTAGCCTTAA 57.821 45.000 12.13 0.00 32.20 1.85
444 445 2.500229 ACGTGCAAAGCTAGCCTTAAA 58.500 42.857 12.13 0.00 32.20 1.52
445 446 2.225727 ACGTGCAAAGCTAGCCTTAAAC 59.774 45.455 12.13 5.73 32.20 2.01
446 447 2.414161 CGTGCAAAGCTAGCCTTAAACC 60.414 50.000 12.13 0.00 32.20 3.27
447 448 2.556622 GTGCAAAGCTAGCCTTAAACCA 59.443 45.455 12.13 0.00 32.20 3.67
448 449 3.005367 GTGCAAAGCTAGCCTTAAACCAA 59.995 43.478 12.13 0.00 32.20 3.67
449 450 3.255642 TGCAAAGCTAGCCTTAAACCAAG 59.744 43.478 12.13 0.00 32.20 3.61
450 451 3.838120 CAAAGCTAGCCTTAAACCAAGC 58.162 45.455 12.13 0.00 32.20 4.01
451 452 2.879103 AGCTAGCCTTAAACCAAGCA 57.121 45.000 12.13 0.00 32.41 3.91
452 453 2.437413 AGCTAGCCTTAAACCAAGCAC 58.563 47.619 12.13 0.00 32.41 4.40
453 454 2.159382 GCTAGCCTTAAACCAAGCACA 58.841 47.619 2.29 0.00 32.41 4.57
454 455 2.095212 GCTAGCCTTAAACCAAGCACAC 60.095 50.000 2.29 0.00 32.41 3.82
455 456 2.065899 AGCCTTAAACCAAGCACACA 57.934 45.000 0.00 0.00 32.41 3.72
456 457 2.383855 AGCCTTAAACCAAGCACACAA 58.616 42.857 0.00 0.00 32.41 3.33
457 458 2.763448 AGCCTTAAACCAAGCACACAAA 59.237 40.909 0.00 0.00 32.41 2.83
458 459 2.863740 GCCTTAAACCAAGCACACAAAC 59.136 45.455 0.00 0.00 32.41 2.93
459 460 3.677424 GCCTTAAACCAAGCACACAAACA 60.677 43.478 0.00 0.00 32.41 2.83
460 461 4.499183 CCTTAAACCAAGCACACAAACAA 58.501 39.130 0.00 0.00 32.41 2.83
461 462 4.566360 CCTTAAACCAAGCACACAAACAAG 59.434 41.667 0.00 0.00 32.41 3.16
462 463 2.008752 AACCAAGCACACAAACAAGC 57.991 45.000 0.00 0.00 0.00 4.01
463 464 0.894141 ACCAAGCACACAAACAAGCA 59.106 45.000 0.00 0.00 0.00 3.91
464 465 1.280066 CCAAGCACACAAACAAGCAC 58.720 50.000 0.00 0.00 0.00 4.40
465 466 1.280066 CAAGCACACAAACAAGCACC 58.720 50.000 0.00 0.00 0.00 5.01
466 467 1.135024 CAAGCACACAAACAAGCACCT 60.135 47.619 0.00 0.00 0.00 4.00
467 468 1.185315 AGCACACAAACAAGCACCTT 58.815 45.000 0.00 0.00 0.00 3.50
468 469 1.135024 AGCACACAAACAAGCACCTTG 60.135 47.619 3.57 3.57 45.85 3.61
469 470 1.135141 GCACACAAACAAGCACCTTGA 60.135 47.619 11.56 0.00 43.42 3.02
470 471 2.529151 CACACAAACAAGCACCTTGAC 58.471 47.619 11.56 0.00 43.42 3.18
471 472 2.164219 CACACAAACAAGCACCTTGACT 59.836 45.455 11.56 0.00 43.42 3.41
472 473 2.164219 ACACAAACAAGCACCTTGACTG 59.836 45.455 11.56 9.71 43.42 3.51
473 474 2.423185 CACAAACAAGCACCTTGACTGA 59.577 45.455 11.56 0.00 43.42 3.41
474 475 3.067180 CACAAACAAGCACCTTGACTGAT 59.933 43.478 11.56 0.00 43.42 2.90
475 476 3.316308 ACAAACAAGCACCTTGACTGATC 59.684 43.478 11.56 0.00 43.42 2.92
476 477 3.498774 AACAAGCACCTTGACTGATCT 57.501 42.857 11.56 0.00 43.42 2.75
477 478 4.623932 AACAAGCACCTTGACTGATCTA 57.376 40.909 11.56 0.00 43.42 1.98
478 479 3.931578 ACAAGCACCTTGACTGATCTAC 58.068 45.455 11.56 0.00 43.42 2.59
479 480 3.324846 ACAAGCACCTTGACTGATCTACA 59.675 43.478 11.56 0.00 43.42 2.74
480 481 4.019860 ACAAGCACCTTGACTGATCTACAT 60.020 41.667 11.56 0.00 43.42 2.29
481 482 4.833478 AGCACCTTGACTGATCTACATT 57.167 40.909 0.00 0.00 0.00 2.71
482 483 5.939764 AGCACCTTGACTGATCTACATTA 57.060 39.130 0.00 0.00 0.00 1.90
483 484 5.665459 AGCACCTTGACTGATCTACATTAC 58.335 41.667 0.00 0.00 0.00 1.89
484 485 4.811557 GCACCTTGACTGATCTACATTACC 59.188 45.833 0.00 0.00 0.00 2.85
485 486 5.043903 CACCTTGACTGATCTACATTACCG 58.956 45.833 0.00 0.00 0.00 4.02
486 487 4.710375 ACCTTGACTGATCTACATTACCGT 59.290 41.667 0.00 0.00 0.00 4.83
487 488 5.043903 CCTTGACTGATCTACATTACCGTG 58.956 45.833 0.00 0.00 0.00 4.94
488 489 4.041740 TGACTGATCTACATTACCGTGC 57.958 45.455 0.00 0.00 0.00 5.34
489 490 3.445805 TGACTGATCTACATTACCGTGCA 59.554 43.478 0.00 0.00 0.00 4.57
490 491 4.099419 TGACTGATCTACATTACCGTGCAT 59.901 41.667 0.00 0.00 0.00 3.96
491 492 4.371786 ACTGATCTACATTACCGTGCATG 58.628 43.478 0.00 0.00 0.00 4.06
492 493 3.130633 TGATCTACATTACCGTGCATGC 58.869 45.455 11.82 11.82 0.00 4.06
493 494 1.566404 TCTACATTACCGTGCATGCG 58.434 50.000 14.09 0.76 0.00 4.73
494 495 1.134936 TCTACATTACCGTGCATGCGT 60.135 47.619 14.09 7.60 0.00 5.24
495 496 2.099427 TCTACATTACCGTGCATGCGTA 59.901 45.455 14.09 6.52 0.00 4.42
496 497 1.286501 ACATTACCGTGCATGCGTAG 58.713 50.000 14.09 6.15 0.00 3.51
516 517 2.725641 GCCACGGCCGAACTTTTT 59.274 55.556 35.90 3.57 34.56 1.94
532 533 1.785768 TTTTTGAGCGCGTGTAGCTA 58.214 45.000 8.43 0.00 46.13 3.32
533 534 2.004583 TTTTGAGCGCGTGTAGCTAT 57.995 45.000 8.43 0.00 46.13 2.97
534 535 2.855660 TTTGAGCGCGTGTAGCTATA 57.144 45.000 8.43 0.00 46.13 1.31
535 536 2.115348 TTGAGCGCGTGTAGCTATAC 57.885 50.000 8.43 10.41 46.13 1.47
536 537 0.041576 TGAGCGCGTGTAGCTATACG 60.042 55.000 31.38 31.38 46.13 3.06
537 538 0.041488 GAGCGCGTGTAGCTATACGT 60.041 55.000 33.86 20.64 46.13 3.57
543 544 2.650765 GCGTGTAGCTATACGTGAATCG 59.349 50.000 33.86 15.12 41.84 3.34
557 558 4.815553 CGTGAATCGTGATAGCTTTCTTG 58.184 43.478 5.74 0.00 34.52 3.02
558 559 4.327357 CGTGAATCGTGATAGCTTTCTTGT 59.673 41.667 5.74 0.00 34.52 3.16
559 560 5.554636 GTGAATCGTGATAGCTTTCTTGTG 58.445 41.667 5.74 0.00 0.00 3.33
560 561 5.120830 GTGAATCGTGATAGCTTTCTTGTGT 59.879 40.000 5.74 0.00 0.00 3.72
561 562 6.310467 GTGAATCGTGATAGCTTTCTTGTGTA 59.690 38.462 5.74 0.00 0.00 2.90
562 563 7.010552 GTGAATCGTGATAGCTTTCTTGTGTAT 59.989 37.037 5.74 0.00 0.00 2.29
563 564 8.194769 TGAATCGTGATAGCTTTCTTGTGTATA 58.805 33.333 5.74 0.00 0.00 1.47
564 565 9.197694 GAATCGTGATAGCTTTCTTGTGTATAT 57.802 33.333 5.74 0.00 0.00 0.86
566 567 9.627395 ATCGTGATAGCTTTCTTGTGTATATAC 57.373 33.333 5.89 5.89 0.00 1.47
567 568 8.847196 TCGTGATAGCTTTCTTGTGTATATACT 58.153 33.333 13.89 0.00 0.00 2.12
568 569 8.906693 CGTGATAGCTTTCTTGTGTATATACTG 58.093 37.037 13.89 2.74 0.00 2.74
569 570 9.751542 GTGATAGCTTTCTTGTGTATATACTGT 57.248 33.333 13.89 0.00 0.00 3.55
842 843 5.948992 CATCTAGATGTGACATAGTCGGA 57.051 43.478 22.42 0.00 34.95 4.55
843 844 5.694816 CATCTAGATGTGACATAGTCGGAC 58.305 45.833 22.42 0.00 34.95 4.79
844 845 3.808174 TCTAGATGTGACATAGTCGGACG 59.192 47.826 0.00 0.00 34.95 4.79
845 846 1.676529 AGATGTGACATAGTCGGACGG 59.323 52.381 0.00 0.00 34.95 4.79
849 850 2.094906 TGTGACATAGTCGGACGGAAAG 60.095 50.000 1.89 0.00 34.95 2.62
854 855 4.828829 ACATAGTCGGACGGAAAGAAAAT 58.171 39.130 1.89 0.00 0.00 1.82
860 861 4.868734 GTCGGACGGAAAGAAAATATCACT 59.131 41.667 0.00 0.00 0.00 3.41
862 863 4.026804 CGGACGGAAAGAAAATATCACTCG 60.027 45.833 0.00 0.00 0.00 4.18
918 919 5.470098 ACTGTGCTTTCATGTCGATTTTACT 59.530 36.000 0.00 0.00 0.00 2.24
992 993 6.151817 GCCTACATTCTGATCTGAAACCTTTT 59.848 38.462 17.62 0.00 0.00 2.27
1023 1024 5.351233 TTTACGTTGCTCCAGTAAACATG 57.649 39.130 0.00 0.00 35.99 3.21
1053 1054 6.601217 GCAGAAATCAGGAAGAAATAGGAAGT 59.399 38.462 0.00 0.00 0.00 3.01
1162 1163 4.727507 AGTCACTATGCTAACCACAGAG 57.272 45.455 0.00 0.00 32.64 3.35
1167 1168 0.921896 ATGCTAACCACAGAGGCCAT 59.078 50.000 5.01 0.00 43.14 4.40
1323 1325 1.063174 GCTCCATTTCGTGTCATGCTC 59.937 52.381 0.00 0.00 0.00 4.26
1374 1376 5.393896 CCATTCTTCCTCCTTCAAGCATTTC 60.394 44.000 0.00 0.00 0.00 2.17
1491 1493 1.299976 GAGTTGCCAGGGTAGGGTG 59.700 63.158 0.00 0.00 0.00 4.61
1584 1586 6.143118 CCTCGACTTCATTCTTCGTTATCATC 59.857 42.308 0.00 0.00 34.35 2.92
1686 1688 5.119588 CAGCTTGCTTGTGTAATTCAAATGG 59.880 40.000 0.00 0.00 0.00 3.16
1720 1722 0.178932 GGGGAAAAGGGAAGGCTTGT 60.179 55.000 3.46 0.00 0.00 3.16
1749 1751 0.627451 AGCATGGAGGAGATGCCAAA 59.373 50.000 0.00 0.00 46.24 3.28
2115 2117 2.919602 AGGGGACAAAGCTATTCCAGAA 59.080 45.455 9.71 0.00 0.00 3.02
2254 2256 3.093057 ACCTGAGAGTTATGAACGAGCT 58.907 45.455 0.00 0.00 36.23 4.09
2269 2271 1.151668 GAGCTGTTGACGAGTGCAAT 58.848 50.000 0.00 0.00 0.00 3.56
2289 2291 1.744368 CAGCACTGGAAGCATCGCT 60.744 57.895 0.00 0.00 42.56 4.93
2719 2721 8.642432 AGACATAATCATGACGAGGATAAAAGA 58.358 33.333 0.00 0.00 35.96 2.52
2729 2731 5.058490 ACGAGGATAAAAGAAACACGGAAA 58.942 37.500 0.00 0.00 0.00 3.13
2755 2757 0.322277 AGGTGAAGCATGGTCAGCAG 60.322 55.000 20.54 0.00 44.19 4.24
2983 2985 1.821136 GTACCAACCACTAGCCGTAGT 59.179 52.381 0.00 0.00 40.38 2.73
3076 3078 0.178970 ATACTAGTCGTGGCGGGGAT 60.179 55.000 0.00 0.00 0.00 3.85
3142 3144 4.037923 GGAGATGAGCACCAAAAACAGAAA 59.962 41.667 0.00 0.00 0.00 2.52
3155 3157 0.374758 ACAGAAACGCGCATATGCTG 59.625 50.000 24.56 18.55 39.32 4.41
3262 3264 0.498927 CGATAAACGTAGCTCGCTGC 59.501 55.000 0.85 0.00 44.19 5.25
3274 3276 1.073216 CTCGCTGCAAGTACAGTCCG 61.073 60.000 0.00 0.00 39.96 4.79
3367 3369 3.532102 ACTAAGGTGGGTTGAGGATCTT 58.468 45.455 0.00 0.00 34.92 2.40
3385 3387 1.537814 TTAAGCAAGGACCCGCTCGA 61.538 55.000 6.48 0.00 37.54 4.04
3637 3639 3.564027 GGTACGCGGCTGTGCATC 61.564 66.667 12.47 0.00 34.15 3.91
3691 3693 1.808945 GCCCAGGAGATATTTCATGCG 59.191 52.381 2.53 0.00 0.00 4.73
3727 3729 7.622967 ATTTCAGGAAATGGCAGCTTTAGCG 62.623 44.000 6.46 0.00 41.61 4.26
3802 3804 3.623906 TCAGAGGATGCTTCAAAGGAG 57.376 47.619 1.64 0.00 0.00 3.69
3952 3954 3.772932 TCAACAGTTTGAGCAAGCAAAG 58.227 40.909 0.00 0.00 38.33 2.77
3955 3957 2.124903 CAGTTTGAGCAAGCAAAGCTG 58.875 47.619 2.16 8.92 43.58 4.24
3969 3971 1.453155 AAGCTGTCTTGGCGTTATGG 58.547 50.000 0.00 0.00 34.52 2.74
4033 4035 5.107298 GCTATTCAATCGTGCTGAGGATAAC 60.107 44.000 0.00 0.00 0.00 1.89
4063 4065 0.475906 GAATGGAGATGTGGGAGGGG 59.524 60.000 0.00 0.00 0.00 4.79
4087 4089 7.208080 GGATAGAATACTTGCGACTAAAAGGA 58.792 38.462 0.00 0.00 0.00 3.36
4090 4092 7.308782 AGAATACTTGCGACTAAAAGGATTG 57.691 36.000 0.00 0.00 37.13 2.67
4974 4980 9.868277 CAAAAATTACATTTAATCCTGGTGCTA 57.132 29.630 0.00 0.00 0.00 3.49
5565 5614 3.782992 ACCCTTTCCAATCAAGCATCTT 58.217 40.909 0.00 0.00 0.00 2.40
5665 5714 2.750166 CCGTCTCTGAAGAGTTCTAGCA 59.250 50.000 7.20 0.00 42.60 3.49
5718 5767 3.249189 GGCATCGCCCCTGGGATA 61.249 66.667 16.20 0.00 44.06 2.59
5719 5768 2.348998 GCATCGCCCCTGGGATAG 59.651 66.667 16.20 4.95 41.79 2.08
5720 5769 3.072476 CATCGCCCCTGGGATAGG 58.928 66.667 16.20 0.00 46.88 2.57
5753 5802 2.114411 GTGGGTGGCCGAAAAGGA 59.886 61.111 0.00 0.00 45.00 3.36
5880 5929 0.673022 GGCCTGTCAACAGAGCAGAG 60.673 60.000 11.70 0.00 46.59 3.35
6088 6137 1.627329 TGTTGCTGAAGAGGATGCTCT 59.373 47.619 11.53 11.53 34.76 4.09
6089 6138 2.833943 TGTTGCTGAAGAGGATGCTCTA 59.166 45.455 17.95 1.57 32.66 2.43
6117 6168 6.643388 AGATGACCAAAGAAACAAAGCTTTT 58.357 32.000 9.53 0.00 32.36 2.27
6161 6212 9.289782 AGAATTGAGCAATGGGTATTAGAATAC 57.710 33.333 4.15 4.15 40.37 1.89
6231 6282 6.528321 TGCAACCCAATTTCAATGATGTTTA 58.472 32.000 0.00 0.00 0.00 2.01
6232 6283 7.166851 TGCAACCCAATTTCAATGATGTTTAT 58.833 30.769 0.00 0.00 0.00 1.40
6281 6332 1.275010 CATTGTACCCTTTGCCCCAAC 59.725 52.381 0.00 0.00 0.00 3.77
6319 6370 2.704572 CTGAGGTGGACTTTGGCTAAG 58.295 52.381 7.15 7.15 39.87 2.18
6585 6678 1.136500 GGTACTCCCGGAAGATGTCAC 59.864 57.143 0.73 0.00 0.00 3.67
6628 6721 3.215975 AGCGGATACTCCACTCTAAGAC 58.784 50.000 0.00 0.00 35.91 3.01
6693 6786 1.067295 TTTCACATCACCTCCTGGCT 58.933 50.000 0.00 0.00 36.63 4.75
6794 6887 7.664552 ATTGATGAATAACACCATGTCCAAT 57.335 32.000 0.00 0.00 0.00 3.16
6921 7014 4.808364 GGCTCTGTCAACTCATCTTGTATC 59.192 45.833 0.00 0.00 0.00 2.24
7046 7139 9.725019 ACTGTCTATATTCATGAACTGAAACAA 57.275 29.630 11.07 0.00 46.62 2.83
7338 7435 4.582240 TCCACTATTTGTGTGCATGAACAA 59.418 37.500 8.49 6.52 44.81 2.83
7352 7449 4.201950 GCATGAACAATACTGGGTTAGCAG 60.202 45.833 0.00 0.00 0.00 4.24
7353 7450 3.343617 TGAACAATACTGGGTTAGCAGC 58.656 45.455 0.00 0.00 0.00 5.25
7354 7451 3.244735 TGAACAATACTGGGTTAGCAGCA 60.245 43.478 0.00 0.00 0.00 4.41
7355 7452 2.711542 ACAATACTGGGTTAGCAGCAC 58.288 47.619 0.00 0.00 0.00 4.40
7356 7453 2.039746 ACAATACTGGGTTAGCAGCACA 59.960 45.455 0.00 0.00 0.00 4.57
7357 7454 2.679837 CAATACTGGGTTAGCAGCACAG 59.320 50.000 0.00 3.40 35.40 3.66
7358 7455 1.639722 TACTGGGTTAGCAGCACAGA 58.360 50.000 10.67 0.00 33.57 3.41
7359 7456 0.987294 ACTGGGTTAGCAGCACAGAT 59.013 50.000 10.67 0.00 33.57 2.90
7360 7457 1.339438 ACTGGGTTAGCAGCACAGATG 60.339 52.381 10.67 0.00 33.57 2.90
7361 7458 0.035152 TGGGTTAGCAGCACAGATGG 60.035 55.000 0.00 0.00 0.00 3.51
7362 7459 0.253044 GGGTTAGCAGCACAGATGGA 59.747 55.000 0.00 0.00 0.00 3.41
7363 7460 1.340017 GGGTTAGCAGCACAGATGGAA 60.340 52.381 0.00 0.00 0.00 3.53
7364 7461 1.740025 GGTTAGCAGCACAGATGGAAC 59.260 52.381 0.00 0.00 0.00 3.62
7365 7462 1.740025 GTTAGCAGCACAGATGGAACC 59.260 52.381 0.00 0.00 0.00 3.62
7366 7463 1.279496 TAGCAGCACAGATGGAACCT 58.721 50.000 0.00 0.00 0.00 3.50
7367 7464 0.403271 AGCAGCACAGATGGAACCTT 59.597 50.000 0.00 0.00 0.00 3.50
7368 7465 1.202976 AGCAGCACAGATGGAACCTTT 60.203 47.619 0.00 0.00 0.00 3.11
7369 7466 1.615392 GCAGCACAGATGGAACCTTTT 59.385 47.619 0.00 0.00 0.00 2.27
7370 7467 2.036346 GCAGCACAGATGGAACCTTTTT 59.964 45.455 0.00 0.00 0.00 1.94
7390 7487 3.602390 TTTCTCGAGAAAACGCAAAGG 57.398 42.857 32.77 0.00 40.68 3.11
7391 7488 2.519377 TCTCGAGAAAACGCAAAGGA 57.481 45.000 14.01 0.00 0.00 3.36
7392 7489 3.040147 TCTCGAGAAAACGCAAAGGAT 57.960 42.857 14.01 0.00 0.00 3.24
7393 7490 3.399330 TCTCGAGAAAACGCAAAGGATT 58.601 40.909 14.01 0.00 0.00 3.01
7394 7491 3.813166 TCTCGAGAAAACGCAAAGGATTT 59.187 39.130 14.01 0.00 40.26 2.17
7406 7503 2.000429 AAGGATTTGCGCTTCATTGC 58.000 45.000 9.73 0.00 0.00 3.56
7407 7504 0.889994 AGGATTTGCGCTTCATTGCA 59.110 45.000 9.73 0.00 39.81 4.08
7408 7505 1.479323 AGGATTTGCGCTTCATTGCAT 59.521 42.857 9.73 0.00 41.42 3.96
7409 7506 2.093869 AGGATTTGCGCTTCATTGCATT 60.094 40.909 9.73 0.00 41.42 3.56
7544 7641 4.505191 CCAAATTGCGATTTTCAGCTATGG 59.495 41.667 9.31 2.53 33.25 2.74
7565 7663 6.867519 TGGTCTCTTCTTTGGTACATATCA 57.132 37.500 0.00 0.00 39.30 2.15
7587 7685 1.064166 AGATCCGTTCGGTCCTCCTTA 60.064 52.381 11.04 0.00 0.00 2.69
7861 7962 7.414222 TCATTCATATATCCCGGTTACCTAC 57.586 40.000 0.00 0.00 0.00 3.18
7979 8080 2.808543 CAACTCCAGGAAGTGTGCTAAC 59.191 50.000 0.00 0.00 0.00 2.34
7997 8098 7.778382 TGTGCTAACTTGAGGTCATATAGAGTA 59.222 37.037 0.00 0.00 0.00 2.59
8057 8158 4.157840 GGGAAATGACCCTGTATGTTTCAC 59.842 45.833 0.00 0.00 45.90 3.18
8251 8352 6.511807 AGGCTACTCCCCTTCCTACTTATATA 59.488 42.308 0.00 0.00 34.51 0.86
8252 8353 6.606796 GGCTACTCCCCTTCCTACTTATATAC 59.393 46.154 0.00 0.00 0.00 1.47
8253 8354 7.412627 GCTACTCCCCTTCCTACTTATATACT 58.587 42.308 0.00 0.00 0.00 2.12
8254 8355 7.557358 GCTACTCCCCTTCCTACTTATATACTC 59.443 44.444 0.00 0.00 0.00 2.59
8255 8356 6.803017 ACTCCCCTTCCTACTTATATACTCC 58.197 44.000 0.00 0.00 0.00 3.85
8256 8357 6.163110 TCCCCTTCCTACTTATATACTCCC 57.837 45.833 0.00 0.00 0.00 4.30
8257 8358 5.622642 TCCCCTTCCTACTTATATACTCCCA 59.377 44.000 0.00 0.00 0.00 4.37
8258 8359 5.720520 CCCCTTCCTACTTATATACTCCCAC 59.279 48.000 0.00 0.00 0.00 4.61
8259 8360 5.720520 CCCTTCCTACTTATATACTCCCACC 59.279 48.000 0.00 0.00 0.00 4.61
8260 8361 6.320518 CCTTCCTACTTATATACTCCCACCA 58.679 44.000 0.00 0.00 0.00 4.17
8261 8362 6.960542 CCTTCCTACTTATATACTCCCACCAT 59.039 42.308 0.00 0.00 0.00 3.55
8262 8363 7.124448 CCTTCCTACTTATATACTCCCACCATC 59.876 44.444 0.00 0.00 0.00 3.51
8263 8364 6.500336 TCCTACTTATATACTCCCACCATCC 58.500 44.000 0.00 0.00 0.00 3.51
8264 8365 5.661759 CCTACTTATATACTCCCACCATCCC 59.338 48.000 0.00 0.00 0.00 3.85
8265 8366 5.101254 ACTTATATACTCCCACCATCCCA 57.899 43.478 0.00 0.00 0.00 4.37
8266 8367 5.482580 ACTTATATACTCCCACCATCCCAA 58.517 41.667 0.00 0.00 0.00 4.12
8267 8368 5.914716 ACTTATATACTCCCACCATCCCAAA 59.085 40.000 0.00 0.00 0.00 3.28
8268 8369 6.391649 ACTTATATACTCCCACCATCCCAAAA 59.608 38.462 0.00 0.00 0.00 2.44
8269 8370 5.948481 ATATACTCCCACCATCCCAAAAT 57.052 39.130 0.00 0.00 0.00 1.82
8270 8371 8.527135 TTATATACTCCCACCATCCCAAAATA 57.473 34.615 0.00 0.00 0.00 1.40
8271 8372 5.742562 ATACTCCCACCATCCCAAAATAA 57.257 39.130 0.00 0.00 0.00 1.40
8272 8373 3.981212 ACTCCCACCATCCCAAAATAAG 58.019 45.455 0.00 0.00 0.00 1.73
8273 8374 3.336694 ACTCCCACCATCCCAAAATAAGT 59.663 43.478 0.00 0.00 0.00 2.24
8274 8375 3.701040 CTCCCACCATCCCAAAATAAGTG 59.299 47.826 0.00 0.00 0.00 3.16
8275 8376 3.076785 TCCCACCATCCCAAAATAAGTGT 59.923 43.478 0.00 0.00 0.00 3.55
8276 8377 3.447229 CCCACCATCCCAAAATAAGTGTC 59.553 47.826 0.00 0.00 0.00 3.67
8277 8378 4.344104 CCACCATCCCAAAATAAGTGTCT 58.656 43.478 0.00 0.00 0.00 3.41
8278 8379 4.772100 CCACCATCCCAAAATAAGTGTCTT 59.228 41.667 0.00 0.00 0.00 3.01
8279 8380 5.949354 CCACCATCCCAAAATAAGTGTCTTA 59.051 40.000 0.00 0.00 0.00 2.10
8280 8381 6.435904 CCACCATCCCAAAATAAGTGTCTTAA 59.564 38.462 0.00 0.00 0.00 1.85
8281 8382 7.312899 CACCATCCCAAAATAAGTGTCTTAAC 58.687 38.462 0.00 0.00 0.00 2.01
8282 8383 7.176690 CACCATCCCAAAATAAGTGTCTTAACT 59.823 37.037 0.00 0.00 0.00 2.24
8283 8384 7.728532 ACCATCCCAAAATAAGTGTCTTAACTT 59.271 33.333 0.00 0.00 42.89 2.66
8284 8385 8.585018 CCATCCCAAAATAAGTGTCTTAACTTT 58.415 33.333 0.00 0.00 40.77 2.66
8285 8386 9.410556 CATCCCAAAATAAGTGTCTTAACTTTG 57.589 33.333 14.00 14.00 40.77 2.77
8286 8387 8.528044 TCCCAAAATAAGTGTCTTAACTTTGT 57.472 30.769 16.72 0.00 40.77 2.83
8287 8388 9.629878 TCCCAAAATAAGTGTCTTAACTTTGTA 57.370 29.630 16.72 8.94 40.77 2.41
8288 8389 9.673454 CCCAAAATAAGTGTCTTAACTTTGTAC 57.327 33.333 16.72 0.00 40.77 2.90
8326 8427 7.923414 AAGTTGAACTAAACTTGAGACACTT 57.077 32.000 0.00 0.00 46.16 3.16
8328 8429 9.614792 AAGTTGAACTAAACTTGAGACACTTAT 57.385 29.630 0.00 0.00 46.16 1.73
8329 8430 9.614792 AGTTGAACTAAACTTGAGACACTTATT 57.385 29.630 0.00 0.00 37.05 1.40
8333 8434 9.665264 GAACTAAACTTGAGACACTTATTTTGG 57.335 33.333 0.00 0.00 0.00 3.28
8334 8435 8.166422 ACTAAACTTGAGACACTTATTTTGGG 57.834 34.615 0.00 0.00 0.00 4.12
8335 8436 7.996644 ACTAAACTTGAGACACTTATTTTGGGA 59.003 33.333 0.00 0.00 0.00 4.37
8336 8437 7.654022 AAACTTGAGACACTTATTTTGGGAA 57.346 32.000 0.00 0.00 0.00 3.97
8337 8438 6.884280 ACTTGAGACACTTATTTTGGGAAG 57.116 37.500 0.00 0.00 0.00 3.46
8338 8439 5.770162 ACTTGAGACACTTATTTTGGGAAGG 59.230 40.000 0.00 0.00 0.00 3.46
8339 8440 5.576563 TGAGACACTTATTTTGGGAAGGA 57.423 39.130 0.00 0.00 0.00 3.36
8340 8441 5.560724 TGAGACACTTATTTTGGGAAGGAG 58.439 41.667 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.008074 AGTGCTTGAAAGAGGATTCGAA 57.992 40.909 0.00 0.00 31.80 3.71
1 2 3.685139 AGTGCTTGAAAGAGGATTCGA 57.315 42.857 0.00 0.00 31.80 3.71
2 3 4.756084 AAAGTGCTTGAAAGAGGATTCG 57.244 40.909 0.00 0.00 31.80 3.34
3 4 9.481340 AAAATAAAAGTGCTTGAAAGAGGATTC 57.519 29.630 0.00 0.00 0.00 2.52
59 60 5.105917 CCATGGTAAATCGCTAGTGGTTTTT 60.106 40.000 19.08 11.21 0.00 1.94
60 61 4.398044 CCATGGTAAATCGCTAGTGGTTTT 59.602 41.667 19.08 13.37 0.00 2.43
61 62 3.945285 CCATGGTAAATCGCTAGTGGTTT 59.055 43.478 18.06 18.06 0.00 3.27
62 63 3.054655 ACCATGGTAAATCGCTAGTGGTT 60.055 43.478 18.10 0.00 35.31 3.67
63 64 2.504175 ACCATGGTAAATCGCTAGTGGT 59.496 45.455 18.10 0.00 34.10 4.16
64 65 3.194005 ACCATGGTAAATCGCTAGTGG 57.806 47.619 18.10 0.00 0.00 4.00
65 66 5.560966 AAAACCATGGTAAATCGCTAGTG 57.439 39.130 20.12 0.00 0.00 2.74
66 67 5.708230 TCAAAAACCATGGTAAATCGCTAGT 59.292 36.000 20.12 0.00 0.00 2.57
67 68 6.093495 TCTCAAAAACCATGGTAAATCGCTAG 59.907 38.462 20.12 8.69 0.00 3.42
68 69 5.941058 TCTCAAAAACCATGGTAAATCGCTA 59.059 36.000 20.12 0.00 0.00 4.26
69 70 4.764823 TCTCAAAAACCATGGTAAATCGCT 59.235 37.500 20.12 0.00 0.00 4.93
70 71 5.054390 TCTCAAAAACCATGGTAAATCGC 57.946 39.130 20.12 0.00 0.00 4.58
71 72 7.116233 CCTTTTCTCAAAAACCATGGTAAATCG 59.884 37.037 20.12 6.36 31.23 3.34
72 73 8.147704 TCCTTTTCTCAAAAACCATGGTAAATC 58.852 33.333 20.12 0.00 31.23 2.17
73 74 8.028652 TCCTTTTCTCAAAAACCATGGTAAAT 57.971 30.769 20.12 4.73 31.23 1.40
74 75 7.425224 TCCTTTTCTCAAAAACCATGGTAAA 57.575 32.000 20.12 10.26 31.23 2.01
75 76 7.425224 TTCCTTTTCTCAAAAACCATGGTAA 57.575 32.000 20.12 3.53 31.23 2.85
76 77 7.425224 TTTCCTTTTCTCAAAAACCATGGTA 57.575 32.000 20.12 0.00 31.23 3.25
77 78 5.948742 TTCCTTTTCTCAAAAACCATGGT 57.051 34.783 13.00 13.00 31.23 3.55
78 79 7.622893 TTTTTCCTTTTCTCAAAAACCATGG 57.377 32.000 11.19 11.19 31.23 3.66
91 92 9.745323 CGCTTTTCATTGATATTTTTCCTTTTC 57.255 29.630 0.00 0.00 0.00 2.29
92 93 9.487790 TCGCTTTTCATTGATATTTTTCCTTTT 57.512 25.926 0.00 0.00 0.00 2.27
93 94 9.143631 CTCGCTTTTCATTGATATTTTTCCTTT 57.856 29.630 0.00 0.00 0.00 3.11
94 95 7.276438 GCTCGCTTTTCATTGATATTTTTCCTT 59.724 33.333 0.00 0.00 0.00 3.36
95 96 6.753744 GCTCGCTTTTCATTGATATTTTTCCT 59.246 34.615 0.00 0.00 0.00 3.36
96 97 6.753744 AGCTCGCTTTTCATTGATATTTTTCC 59.246 34.615 0.00 0.00 0.00 3.13
97 98 7.253883 CCAGCTCGCTTTTCATTGATATTTTTC 60.254 37.037 0.00 0.00 0.00 2.29
98 99 6.532657 CCAGCTCGCTTTTCATTGATATTTTT 59.467 34.615 0.00 0.00 0.00 1.94
99 100 6.038356 CCAGCTCGCTTTTCATTGATATTTT 58.962 36.000 0.00 0.00 0.00 1.82
100 101 5.357878 TCCAGCTCGCTTTTCATTGATATTT 59.642 36.000 0.00 0.00 0.00 1.40
101 102 4.883585 TCCAGCTCGCTTTTCATTGATATT 59.116 37.500 0.00 0.00 0.00 1.28
102 103 4.454678 TCCAGCTCGCTTTTCATTGATAT 58.545 39.130 0.00 0.00 0.00 1.63
103 104 3.872696 TCCAGCTCGCTTTTCATTGATA 58.127 40.909 0.00 0.00 0.00 2.15
104 105 2.715046 TCCAGCTCGCTTTTCATTGAT 58.285 42.857 0.00 0.00 0.00 2.57
105 106 2.183478 TCCAGCTCGCTTTTCATTGA 57.817 45.000 0.00 0.00 0.00 2.57
106 107 2.995466 TTCCAGCTCGCTTTTCATTG 57.005 45.000 0.00 0.00 0.00 2.82
107 108 3.149196 TCTTTCCAGCTCGCTTTTCATT 58.851 40.909 0.00 0.00 0.00 2.57
108 109 2.783135 TCTTTCCAGCTCGCTTTTCAT 58.217 42.857 0.00 0.00 0.00 2.57
109 110 2.254546 TCTTTCCAGCTCGCTTTTCA 57.745 45.000 0.00 0.00 0.00 2.69
110 111 3.242576 GCTATCTTTCCAGCTCGCTTTTC 60.243 47.826 0.00 0.00 34.86 2.29
111 112 2.680339 GCTATCTTTCCAGCTCGCTTTT 59.320 45.455 0.00 0.00 34.86 2.27
112 113 2.284190 GCTATCTTTCCAGCTCGCTTT 58.716 47.619 0.00 0.00 34.86 3.51
113 114 1.804372 CGCTATCTTTCCAGCTCGCTT 60.804 52.381 0.00 0.00 35.57 4.68
114 115 0.249238 CGCTATCTTTCCAGCTCGCT 60.249 55.000 0.00 0.00 35.57 4.93
115 116 0.249073 TCGCTATCTTTCCAGCTCGC 60.249 55.000 0.00 0.00 35.57 5.03
116 117 2.287849 TGATCGCTATCTTTCCAGCTCG 60.288 50.000 0.00 0.00 35.57 5.03
117 118 3.056304 GTGATCGCTATCTTTCCAGCTC 58.944 50.000 0.00 0.00 35.57 4.09
118 119 2.432146 TGTGATCGCTATCTTTCCAGCT 59.568 45.455 7.94 0.00 35.57 4.24
119 120 2.826428 TGTGATCGCTATCTTTCCAGC 58.174 47.619 7.94 0.00 32.93 4.85
120 121 5.047731 TCCTATGTGATCGCTATCTTTCCAG 60.048 44.000 7.94 0.00 32.93 3.86
121 122 4.832823 TCCTATGTGATCGCTATCTTTCCA 59.167 41.667 7.94 0.00 32.93 3.53
122 123 5.392767 TCCTATGTGATCGCTATCTTTCC 57.607 43.478 7.94 0.00 32.93 3.13
123 124 6.451393 AGTTCCTATGTGATCGCTATCTTTC 58.549 40.000 7.94 0.00 32.93 2.62
124 125 6.412362 AGTTCCTATGTGATCGCTATCTTT 57.588 37.500 7.94 0.00 32.93 2.52
125 126 6.717540 ACTAGTTCCTATGTGATCGCTATCTT 59.282 38.462 7.94 0.00 32.93 2.40
126 127 6.242396 ACTAGTTCCTATGTGATCGCTATCT 58.758 40.000 7.94 0.08 32.93 1.98
127 128 6.503589 ACTAGTTCCTATGTGATCGCTATC 57.496 41.667 7.94 0.00 0.00 2.08
128 129 5.122554 CGACTAGTTCCTATGTGATCGCTAT 59.877 44.000 7.94 2.50 0.00 2.97
129 130 4.451435 CGACTAGTTCCTATGTGATCGCTA 59.549 45.833 7.94 0.00 0.00 4.26
130 131 3.251245 CGACTAGTTCCTATGTGATCGCT 59.749 47.826 7.94 0.00 0.00 4.93
131 132 3.003482 ACGACTAGTTCCTATGTGATCGC 59.997 47.826 0.00 0.00 0.00 4.58
132 133 4.528504 CACGACTAGTTCCTATGTGATCG 58.471 47.826 0.00 0.00 0.00 3.69
133 134 4.291783 GCACGACTAGTTCCTATGTGATC 58.708 47.826 0.00 0.00 0.00 2.92
134 135 3.243101 CGCACGACTAGTTCCTATGTGAT 60.243 47.826 0.00 0.00 0.00 3.06
135 136 2.096980 CGCACGACTAGTTCCTATGTGA 59.903 50.000 0.00 0.00 0.00 3.58
136 137 2.451132 CGCACGACTAGTTCCTATGTG 58.549 52.381 0.00 1.33 0.00 3.21
137 138 1.404391 CCGCACGACTAGTTCCTATGT 59.596 52.381 0.00 0.00 0.00 2.29
138 139 1.674441 TCCGCACGACTAGTTCCTATG 59.326 52.381 0.00 0.00 0.00 2.23
139 140 2.048444 TCCGCACGACTAGTTCCTAT 57.952 50.000 0.00 0.00 0.00 2.57
140 141 1.945394 GATCCGCACGACTAGTTCCTA 59.055 52.381 0.00 0.00 0.00 2.94
141 142 0.739561 GATCCGCACGACTAGTTCCT 59.260 55.000 0.00 0.00 0.00 3.36
142 143 0.739561 AGATCCGCACGACTAGTTCC 59.260 55.000 0.00 0.00 0.00 3.62
143 144 1.132643 ACAGATCCGCACGACTAGTTC 59.867 52.381 0.00 0.00 0.00 3.01
144 145 1.132643 GACAGATCCGCACGACTAGTT 59.867 52.381 0.00 0.00 0.00 2.24
145 146 0.733729 GACAGATCCGCACGACTAGT 59.266 55.000 0.00 0.00 0.00 2.57
146 147 0.316278 CGACAGATCCGCACGACTAG 60.316 60.000 0.00 0.00 0.00 2.57
147 148 1.719709 CGACAGATCCGCACGACTA 59.280 57.895 0.00 0.00 0.00 2.59
148 149 2.485582 CGACAGATCCGCACGACT 59.514 61.111 0.00 0.00 0.00 4.18
155 156 1.944676 GCCGTTAGCGACAGATCCG 60.945 63.158 0.00 0.00 41.33 4.18
156 157 1.591863 GGCCGTTAGCGACAGATCC 60.592 63.158 0.00 0.00 45.17 3.36
157 158 0.872021 CTGGCCGTTAGCGACAGATC 60.872 60.000 14.97 0.00 45.17 2.75
158 159 1.141881 CTGGCCGTTAGCGACAGAT 59.858 57.895 14.97 0.00 45.17 2.90
159 160 2.209064 GACTGGCCGTTAGCGACAGA 62.209 60.000 22.82 0.00 45.17 3.41
160 161 1.805945 GACTGGCCGTTAGCGACAG 60.806 63.158 17.29 17.29 45.17 3.51
161 162 2.260434 GACTGGCCGTTAGCGACA 59.740 61.111 0.00 0.00 45.17 4.35
162 163 2.879462 CGACTGGCCGTTAGCGAC 60.879 66.667 0.00 0.00 45.17 5.19
163 164 3.057548 TCGACTGGCCGTTAGCGA 61.058 61.111 0.00 0.00 45.17 4.93
164 165 1.985447 TAGTCGACTGGCCGTTAGCG 61.985 60.000 28.12 0.00 45.17 4.26
165 166 0.248539 CTAGTCGACTGGCCGTTAGC 60.249 60.000 28.12 0.00 42.60 3.09
166 167 1.063764 GACTAGTCGACTGGCCGTTAG 59.936 57.143 28.12 17.00 0.00 2.34
167 168 1.089920 GACTAGTCGACTGGCCGTTA 58.910 55.000 28.12 4.99 0.00 3.18
168 169 1.881602 GACTAGTCGACTGGCCGTT 59.118 57.895 28.12 8.96 0.00 4.44
169 170 3.588336 GACTAGTCGACTGGCCGT 58.412 61.111 28.12 17.88 0.00 5.68
179 180 5.692613 ATGGACTATGCTAACGACTAGTC 57.307 43.478 13.18 13.18 39.44 2.59
180 181 6.096423 TGAAATGGACTATGCTAACGACTAGT 59.904 38.462 0.00 0.00 0.00 2.57
181 182 6.504398 TGAAATGGACTATGCTAACGACTAG 58.496 40.000 0.00 0.00 0.00 2.57
182 183 6.459670 TGAAATGGACTATGCTAACGACTA 57.540 37.500 0.00 0.00 0.00 2.59
183 184 5.339008 TGAAATGGACTATGCTAACGACT 57.661 39.130 0.00 0.00 0.00 4.18
184 185 6.604735 ATTGAAATGGACTATGCTAACGAC 57.395 37.500 0.00 0.00 0.00 4.34
185 186 8.902540 ATTATTGAAATGGACTATGCTAACGA 57.097 30.769 0.00 0.00 0.00 3.85
186 187 9.385902 CAATTATTGAAATGGACTATGCTAACG 57.614 33.333 0.00 0.00 0.00 3.18
190 191 8.970020 TGAACAATTATTGAAATGGACTATGCT 58.030 29.630 12.28 0.00 0.00 3.79
191 192 9.023967 GTGAACAATTATTGAAATGGACTATGC 57.976 33.333 12.28 0.00 0.00 3.14
210 211 9.605275 TGAACATTATTTGGAAAATGTGAACAA 57.395 25.926 1.78 0.00 43.66 2.83
211 212 9.258826 CTGAACATTATTTGGAAAATGTGAACA 57.741 29.630 1.78 3.35 43.66 3.18
212 213 9.474920 TCTGAACATTATTTGGAAAATGTGAAC 57.525 29.630 1.78 0.00 43.66 3.18
275 276 9.224267 TCCAATTTTCTTTGAAAAATGTGAACA 57.776 25.926 15.30 0.00 38.51 3.18
367 368 8.802267 CCTGAGAAAGGGAACAAATGTAAAATA 58.198 33.333 0.00 0.00 43.15 1.40
368 369 7.670364 CCTGAGAAAGGGAACAAATGTAAAAT 58.330 34.615 0.00 0.00 43.15 1.82
369 370 7.049799 CCTGAGAAAGGGAACAAATGTAAAA 57.950 36.000 0.00 0.00 43.15 1.52
370 371 6.648879 CCTGAGAAAGGGAACAAATGTAAA 57.351 37.500 0.00 0.00 43.15 2.01
371 372 7.343316 TTTTCCTGAGAAAGGGAACAAATGTAA 59.657 33.333 0.00 0.00 43.95 2.41
372 373 6.836527 TTTTCCTGAGAAAGGGAACAAATGTA 59.163 34.615 0.00 0.00 43.95 2.29
373 374 5.660864 TTTTCCTGAGAAAGGGAACAAATGT 59.339 36.000 0.00 0.00 43.95 2.71
374 375 6.160576 TTTTCCTGAGAAAGGGAACAAATG 57.839 37.500 0.00 0.00 43.95 2.32
375 376 6.806668 TTTTTCCTGAGAAAGGGAACAAAT 57.193 33.333 0.00 0.00 43.95 2.32
395 396 4.557895 CGAACGGCAGGGAACTTTATTTTT 60.558 41.667 0.00 0.00 40.21 1.94
396 397 3.057806 CGAACGGCAGGGAACTTTATTTT 60.058 43.478 0.00 0.00 40.21 1.82
397 398 2.486592 CGAACGGCAGGGAACTTTATTT 59.513 45.455 0.00 0.00 40.21 1.40
398 399 2.081462 CGAACGGCAGGGAACTTTATT 58.919 47.619 0.00 0.00 40.21 1.40
399 400 1.734163 CGAACGGCAGGGAACTTTAT 58.266 50.000 0.00 0.00 40.21 1.40
400 401 0.952010 GCGAACGGCAGGGAACTTTA 60.952 55.000 0.00 0.00 40.21 1.85
401 402 2.258726 GCGAACGGCAGGGAACTTT 61.259 57.895 0.00 0.00 40.21 2.66
402 403 2.668550 GCGAACGGCAGGGAACTT 60.669 61.111 0.00 0.00 40.21 2.66
411 412 3.530104 CACGTACGAGCGAACGGC 61.530 66.667 24.41 0.00 43.25 5.68
412 413 3.530104 GCACGTACGAGCGAACGG 61.530 66.667 24.41 1.83 43.25 4.44
413 414 1.868217 TTTGCACGTACGAGCGAACG 61.868 55.000 29.01 2.51 44.47 3.95
414 415 0.179282 CTTTGCACGTACGAGCGAAC 60.179 55.000 29.01 8.36 32.98 3.95
415 416 1.882682 GCTTTGCACGTACGAGCGAA 61.883 55.000 30.03 30.03 34.74 4.70
416 417 2.369629 GCTTTGCACGTACGAGCGA 61.370 57.895 27.99 24.94 34.50 4.93
417 418 1.068832 TAGCTTTGCACGTACGAGCG 61.069 55.000 27.99 17.32 38.34 5.03
418 419 0.640768 CTAGCTTTGCACGTACGAGC 59.359 55.000 27.49 27.49 0.00 5.03
419 420 0.640768 GCTAGCTTTGCACGTACGAG 59.359 55.000 24.41 16.14 0.00 4.18
420 421 0.734942 GGCTAGCTTTGCACGTACGA 60.735 55.000 24.41 0.00 0.00 3.43
421 422 0.736325 AGGCTAGCTTTGCACGTACG 60.736 55.000 15.01 15.01 0.00 3.67
422 423 1.439679 AAGGCTAGCTTTGCACGTAC 58.560 50.000 15.72 0.00 0.00 3.67
423 424 3.322211 TTAAGGCTAGCTTTGCACGTA 57.678 42.857 21.35 0.00 0.00 3.57
424 425 2.178912 TTAAGGCTAGCTTTGCACGT 57.821 45.000 21.35 1.43 0.00 4.49
425 426 2.414161 GGTTTAAGGCTAGCTTTGCACG 60.414 50.000 21.35 0.00 0.00 5.34
426 427 2.556622 TGGTTTAAGGCTAGCTTTGCAC 59.443 45.455 21.35 16.09 0.00 4.57
427 428 2.870175 TGGTTTAAGGCTAGCTTTGCA 58.130 42.857 21.35 5.82 0.00 4.08
428 429 3.838120 CTTGGTTTAAGGCTAGCTTTGC 58.162 45.455 21.35 11.22 32.56 3.68
429 430 3.255642 TGCTTGGTTTAAGGCTAGCTTTG 59.744 43.478 21.35 4.56 36.87 2.77
430 431 3.255888 GTGCTTGGTTTAAGGCTAGCTTT 59.744 43.478 16.94 16.94 36.87 3.51
431 432 2.820197 GTGCTTGGTTTAAGGCTAGCTT 59.180 45.455 15.72 3.40 36.87 3.74
432 433 2.224769 TGTGCTTGGTTTAAGGCTAGCT 60.225 45.455 15.72 0.00 36.87 3.32
433 434 2.095212 GTGTGCTTGGTTTAAGGCTAGC 60.095 50.000 6.04 6.04 36.87 3.42
434 435 3.146066 TGTGTGCTTGGTTTAAGGCTAG 58.854 45.455 0.00 0.00 36.87 3.42
435 436 3.216187 TGTGTGCTTGGTTTAAGGCTA 57.784 42.857 0.00 0.00 36.87 3.93
436 437 2.065899 TGTGTGCTTGGTTTAAGGCT 57.934 45.000 0.00 0.00 36.87 4.58
437 438 2.863740 GTTTGTGTGCTTGGTTTAAGGC 59.136 45.455 0.00 0.00 36.87 4.35
438 439 4.116747 TGTTTGTGTGCTTGGTTTAAGG 57.883 40.909 0.00 0.00 36.87 2.69
439 440 4.032786 GCTTGTTTGTGTGCTTGGTTTAAG 59.967 41.667 0.00 0.00 39.49 1.85
440 441 3.929610 GCTTGTTTGTGTGCTTGGTTTAA 59.070 39.130 0.00 0.00 0.00 1.52
441 442 3.056536 TGCTTGTTTGTGTGCTTGGTTTA 60.057 39.130 0.00 0.00 0.00 2.01
442 443 2.289320 TGCTTGTTTGTGTGCTTGGTTT 60.289 40.909 0.00 0.00 0.00 3.27
443 444 1.274728 TGCTTGTTTGTGTGCTTGGTT 59.725 42.857 0.00 0.00 0.00 3.67
444 445 0.894141 TGCTTGTTTGTGTGCTTGGT 59.106 45.000 0.00 0.00 0.00 3.67
445 446 1.280066 GTGCTTGTTTGTGTGCTTGG 58.720 50.000 0.00 0.00 0.00 3.61
446 447 1.135024 AGGTGCTTGTTTGTGTGCTTG 60.135 47.619 0.00 0.00 0.00 4.01
447 448 1.185315 AGGTGCTTGTTTGTGTGCTT 58.815 45.000 0.00 0.00 0.00 3.91
448 449 1.135024 CAAGGTGCTTGTTTGTGTGCT 60.135 47.619 0.00 0.00 36.79 4.40
449 450 1.135141 TCAAGGTGCTTGTTTGTGTGC 60.135 47.619 0.00 0.00 41.66 4.57
450 451 2.164219 AGTCAAGGTGCTTGTTTGTGTG 59.836 45.455 0.00 0.00 41.66 3.82
451 452 2.164219 CAGTCAAGGTGCTTGTTTGTGT 59.836 45.455 0.00 0.00 41.66 3.72
452 453 2.423185 TCAGTCAAGGTGCTTGTTTGTG 59.577 45.455 0.00 0.00 41.66 3.33
453 454 2.722094 TCAGTCAAGGTGCTTGTTTGT 58.278 42.857 0.00 0.00 41.66 2.83
454 455 3.567164 AGATCAGTCAAGGTGCTTGTTTG 59.433 43.478 0.00 0.00 41.66 2.93
455 456 3.825328 AGATCAGTCAAGGTGCTTGTTT 58.175 40.909 0.00 0.00 41.66 2.83
456 457 3.498774 AGATCAGTCAAGGTGCTTGTT 57.501 42.857 0.00 0.00 41.66 2.83
457 458 3.324846 TGTAGATCAGTCAAGGTGCTTGT 59.675 43.478 0.00 0.00 41.66 3.16
458 459 3.930336 TGTAGATCAGTCAAGGTGCTTG 58.070 45.455 0.00 0.00 42.25 4.01
459 460 4.833478 ATGTAGATCAGTCAAGGTGCTT 57.167 40.909 0.00 0.00 0.00 3.91
460 461 4.833478 AATGTAGATCAGTCAAGGTGCT 57.167 40.909 0.00 0.00 0.00 4.40
461 462 4.811557 GGTAATGTAGATCAGTCAAGGTGC 59.188 45.833 0.00 0.00 0.00 5.01
462 463 5.043903 CGGTAATGTAGATCAGTCAAGGTG 58.956 45.833 0.00 0.00 0.00 4.00
463 464 4.710375 ACGGTAATGTAGATCAGTCAAGGT 59.290 41.667 0.00 0.00 0.00 3.50
464 465 5.043903 CACGGTAATGTAGATCAGTCAAGG 58.956 45.833 0.00 0.00 0.00 3.61
465 466 4.504461 GCACGGTAATGTAGATCAGTCAAG 59.496 45.833 0.00 0.00 0.00 3.02
466 467 4.081917 TGCACGGTAATGTAGATCAGTCAA 60.082 41.667 0.00 0.00 0.00 3.18
467 468 3.445805 TGCACGGTAATGTAGATCAGTCA 59.554 43.478 0.00 0.00 0.00 3.41
468 469 4.041740 TGCACGGTAATGTAGATCAGTC 57.958 45.455 0.00 0.00 0.00 3.51
469 470 4.371786 CATGCACGGTAATGTAGATCAGT 58.628 43.478 0.00 0.00 0.00 3.41
470 471 3.185188 GCATGCACGGTAATGTAGATCAG 59.815 47.826 14.21 0.00 0.00 2.90
471 472 3.130633 GCATGCACGGTAATGTAGATCA 58.869 45.455 14.21 0.00 0.00 2.92
472 473 2.155732 CGCATGCACGGTAATGTAGATC 59.844 50.000 19.57 0.00 0.00 2.75
473 474 2.135139 CGCATGCACGGTAATGTAGAT 58.865 47.619 19.57 0.00 0.00 1.98
474 475 1.134936 ACGCATGCACGGTAATGTAGA 60.135 47.619 19.57 0.00 37.37 2.59
475 476 1.286501 ACGCATGCACGGTAATGTAG 58.713 50.000 19.57 0.00 37.37 2.74
476 477 2.465855 CTACGCATGCACGGTAATGTA 58.534 47.619 19.57 7.97 37.37 2.29
477 478 1.286501 CTACGCATGCACGGTAATGT 58.713 50.000 19.57 7.16 37.37 2.71
478 479 0.042188 GCTACGCATGCACGGTAATG 60.042 55.000 19.57 0.50 37.37 1.90
479 480 1.487452 CGCTACGCATGCACGGTAAT 61.487 55.000 19.57 0.00 37.37 1.89
480 481 2.162120 CGCTACGCATGCACGGTAA 61.162 57.895 19.57 0.00 37.37 2.85
481 482 2.581138 CGCTACGCATGCACGGTA 60.581 61.111 19.57 10.88 37.37 4.02
499 500 2.725641 AAAAAGTTCGGCCGTGGC 59.274 55.556 27.15 16.10 41.06 5.01
513 514 1.785768 TAGCTACACGCGCTCAAAAA 58.214 45.000 5.73 0.00 45.59 1.94
514 515 2.004583 ATAGCTACACGCGCTCAAAA 57.995 45.000 5.73 0.00 45.59 2.44
515 516 2.456989 GTATAGCTACACGCGCTCAAA 58.543 47.619 5.73 0.00 45.59 2.69
516 517 1.596220 CGTATAGCTACACGCGCTCAA 60.596 52.381 12.18 0.00 45.59 3.02
517 518 0.041576 CGTATAGCTACACGCGCTCA 60.042 55.000 12.18 0.00 45.59 4.26
518 519 0.041488 ACGTATAGCTACACGCGCTC 60.041 55.000 23.71 0.00 45.59 5.03
519 520 0.316772 CACGTATAGCTACACGCGCT 60.317 55.000 23.71 2.22 45.59 5.92
520 521 0.316442 TCACGTATAGCTACACGCGC 60.316 55.000 23.71 0.00 45.59 6.86
521 522 2.095384 TTCACGTATAGCTACACGCG 57.905 50.000 23.71 15.17 45.59 6.01
522 523 2.650765 CGATTCACGTATAGCTACACGC 59.349 50.000 23.71 6.75 41.80 5.34
536 537 5.120830 ACACAAGAAAGCTATCACGATTCAC 59.879 40.000 0.00 0.00 0.00 3.18
537 538 5.237815 ACACAAGAAAGCTATCACGATTCA 58.762 37.500 0.00 0.00 0.00 2.57
538 539 5.786401 ACACAAGAAAGCTATCACGATTC 57.214 39.130 0.00 0.00 0.00 2.52
540 541 9.627395 GTATATACACAAGAAAGCTATCACGAT 57.373 33.333 8.05 0.00 0.00 3.73
541 542 8.847196 AGTATATACACAAGAAAGCTATCACGA 58.153 33.333 15.18 0.00 0.00 4.35
542 543 8.906693 CAGTATATACACAAGAAAGCTATCACG 58.093 37.037 15.18 0.00 0.00 4.35
543 544 9.751542 ACAGTATATACACAAGAAAGCTATCAC 57.248 33.333 15.18 0.00 0.00 3.06
820 821 5.615764 CGTCCGACTATGTCACATCTAGATG 60.616 48.000 27.63 27.63 44.15 2.90
821 822 4.452795 CGTCCGACTATGTCACATCTAGAT 59.547 45.833 0.00 0.00 32.09 1.98
822 823 3.808174 CGTCCGACTATGTCACATCTAGA 59.192 47.826 0.00 0.00 32.09 2.43
823 824 3.058846 CCGTCCGACTATGTCACATCTAG 60.059 52.174 0.00 0.00 32.09 2.43
824 825 2.876550 CCGTCCGACTATGTCACATCTA 59.123 50.000 0.00 0.00 32.09 1.98
825 826 1.676529 CCGTCCGACTATGTCACATCT 59.323 52.381 0.00 0.00 32.09 2.90
826 827 1.674441 TCCGTCCGACTATGTCACATC 59.326 52.381 0.00 0.00 32.09 3.06
827 828 1.758936 TCCGTCCGACTATGTCACAT 58.241 50.000 0.00 0.00 32.09 3.21
828 829 1.536940 TTCCGTCCGACTATGTCACA 58.463 50.000 0.00 0.00 32.09 3.58
829 830 2.163010 TCTTTCCGTCCGACTATGTCAC 59.837 50.000 0.00 0.00 32.09 3.67
830 831 2.439409 TCTTTCCGTCCGACTATGTCA 58.561 47.619 0.00 0.00 32.09 3.58
831 832 3.498927 TTCTTTCCGTCCGACTATGTC 57.501 47.619 0.00 0.00 0.00 3.06
832 833 3.947910 TTTCTTTCCGTCCGACTATGT 57.052 42.857 0.00 0.00 0.00 2.29
833 834 6.700081 TGATATTTTCTTTCCGTCCGACTATG 59.300 38.462 0.00 0.00 0.00 2.23
834 835 6.700520 GTGATATTTTCTTTCCGTCCGACTAT 59.299 38.462 0.00 0.00 0.00 2.12
835 836 6.038356 GTGATATTTTCTTTCCGTCCGACTA 58.962 40.000 0.00 0.00 0.00 2.59
836 837 4.868734 GTGATATTTTCTTTCCGTCCGACT 59.131 41.667 0.00 0.00 0.00 4.18
837 838 4.868734 AGTGATATTTTCTTTCCGTCCGAC 59.131 41.667 0.00 0.00 0.00 4.79
838 839 5.080969 AGTGATATTTTCTTTCCGTCCGA 57.919 39.130 0.00 0.00 0.00 4.55
839 840 4.026804 CGAGTGATATTTTCTTTCCGTCCG 60.027 45.833 0.00 0.00 0.00 4.79
840 841 4.868734 ACGAGTGATATTTTCTTTCCGTCC 59.131 41.667 0.00 0.00 0.00 4.79
841 842 5.575606 TGACGAGTGATATTTTCTTTCCGTC 59.424 40.000 0.00 0.00 0.00 4.79
842 843 5.475719 TGACGAGTGATATTTTCTTTCCGT 58.524 37.500 0.00 0.00 0.00 4.69
843 844 6.589830 ATGACGAGTGATATTTTCTTTCCG 57.410 37.500 0.00 0.00 0.00 4.30
844 845 9.278734 GAAAATGACGAGTGATATTTTCTTTCC 57.721 33.333 11.80 0.00 42.17 3.13
849 850 7.010183 TCCGAGAAAATGACGAGTGATATTTTC 59.990 37.037 11.34 11.34 44.12 2.29
854 855 4.976224 TCCGAGAAAATGACGAGTGATA 57.024 40.909 0.00 0.00 0.00 2.15
860 861 2.415168 GCAACATCCGAGAAAATGACGA 59.585 45.455 0.00 0.00 0.00 4.20
862 863 4.406943 GAAGCAACATCCGAGAAAATGAC 58.593 43.478 0.00 0.00 0.00 3.06
918 919 2.219458 CTAGCCGTAGATTGGTCGAGA 58.781 52.381 0.00 0.00 0.00 4.04
951 952 7.885399 AGAATGTAGGCAAATGTTAAGACTCTT 59.115 33.333 0.00 0.00 0.00 2.85
992 993 3.071479 GGAGCAACGTAAACATCCAAGA 58.929 45.455 0.00 0.00 0.00 3.02
1023 1024 2.430465 TCTTCCTGATTTCTGCTGCAC 58.570 47.619 0.00 0.00 0.00 4.57
1162 1163 5.120830 CGTCAGCTATATTTGACTTATGGCC 59.879 44.000 0.00 0.00 41.13 5.36
1167 1168 8.248253 TGAAGTTCGTCAGCTATATTTGACTTA 58.752 33.333 12.33 2.06 41.13 2.24
1323 1325 0.533951 GGGAAAGCAAAGCATGAGGG 59.466 55.000 0.00 0.00 0.00 4.30
1374 1376 2.024941 AGTAAATGCAAGGAGAAGGGGG 60.025 50.000 0.00 0.00 0.00 5.40
1491 1493 1.586154 CCCGTGCAAATGGACACCTC 61.586 60.000 5.90 0.00 36.05 3.85
1584 1586 1.590238 CTTTCAGATGAAGTAGCCGCG 59.410 52.381 0.00 0.00 35.21 6.46
1686 1688 2.514458 TCCCCAAATCAAGGAAGAGC 57.486 50.000 0.00 0.00 0.00 4.09
1720 1722 5.698741 TCTCCTCCATGCTTCAGAATTTA 57.301 39.130 0.00 0.00 0.00 1.40
1749 1751 5.237344 CCAGATTCACTTTGTTTCTTCTCGT 59.763 40.000 0.00 0.00 0.00 4.18
2115 2117 2.529744 GCCCCCTCATAATCCCGCT 61.530 63.158 0.00 0.00 0.00 5.52
2254 2256 0.587768 CTGCATTGCACTCGTCAACA 59.412 50.000 7.38 0.00 33.79 3.33
2269 2271 2.036571 CGATGCTTCCAGTGCTGCA 61.037 57.895 0.00 0.00 39.83 4.41
2289 2291 6.756299 TCAGCAATGCATTTGTATACTTCA 57.244 33.333 9.83 0.00 37.65 3.02
2719 2721 2.425668 CACCTGGTTCTTTTCCGTGTTT 59.574 45.455 0.00 0.00 0.00 2.83
2729 2731 1.145738 ACCATGCTTCACCTGGTTCTT 59.854 47.619 0.00 0.00 40.34 2.52
2755 2757 5.055812 CCTTCATCATCTGCTCCTAGTTTC 58.944 45.833 0.00 0.00 0.00 2.78
2801 2803 0.897401 TGCATTTGTTCCGCATCCCA 60.897 50.000 0.00 0.00 0.00 4.37
2983 2985 6.998074 ACATCTCAGTGTGAATTTCTTGGTTA 59.002 34.615 0.00 0.00 0.00 2.85
3076 3078 4.644685 ACTGAAGTTTGCTTTTCCTGCTTA 59.355 37.500 0.00 0.00 34.61 3.09
3155 3157 3.817647 ACAGTCTTTGTTTCTCCATCAGC 59.182 43.478 0.00 0.00 36.31 4.26
3157 3159 7.054124 ACTTTACAGTCTTTGTTTCTCCATCA 58.946 34.615 0.00 0.00 41.29 3.07
3259 3261 1.291877 GGTGCGGACTGTACTTGCAG 61.292 60.000 7.11 0.00 41.92 4.41
3262 3264 0.317160 TCAGGTGCGGACTGTACTTG 59.683 55.000 7.11 8.12 40.82 3.16
3274 3276 0.108945 GAAGCATTGCCTTCAGGTGC 60.109 55.000 4.70 0.00 40.67 5.01
3367 3369 1.980232 TCGAGCGGGTCCTTGCTTA 60.980 57.895 10.00 1.03 42.60 3.09
3385 3387 8.867097 TCAGGACTTACTTCTTTTATGTACAGT 58.133 33.333 0.33 0.00 0.00 3.55
3460 3462 3.631227 AGATGCTATGCTTTCTTTCCAGC 59.369 43.478 0.00 0.00 36.49 4.85
3637 3639 0.321564 TGGTGTCTTCCATTGCCTCG 60.322 55.000 0.00 0.00 31.96 4.63
3691 3693 1.895131 TCCTGAAATTTTGCCTCTGCC 59.105 47.619 0.00 0.00 36.33 4.85
3727 3729 3.744238 ATGTTGCCCCAGTTAAACAAC 57.256 42.857 0.00 0.00 40.72 3.32
3802 3804 3.764237 TTGACCTGGGAAAGTACAGAC 57.236 47.619 0.00 0.00 36.86 3.51
3952 3954 1.009829 CTCCATAACGCCAAGACAGC 58.990 55.000 0.00 0.00 0.00 4.40
3955 3957 1.599542 GCATCTCCATAACGCCAAGAC 59.400 52.381 0.00 0.00 0.00 3.01
3969 3971 4.509600 GCATGTCTACCTTACAAGCATCTC 59.490 45.833 0.00 0.00 40.36 2.75
4033 4035 5.394883 CCACATCTCCATTCCTTTTTCCATG 60.395 44.000 0.00 0.00 0.00 3.66
4063 4065 8.819643 ATCCTTTTAGTCGCAAGTATTCTATC 57.180 34.615 0.00 0.00 39.48 2.08
4502 4505 7.475840 CAGAAGCTTACATTTCCCAGAATAAC 58.524 38.462 0.00 0.00 0.00 1.89
4703 4708 6.367686 TCTTCGCGATAACATACAAGTCTA 57.632 37.500 10.88 0.00 0.00 2.59
4860 4865 9.561069 ACATTTCTGAAGTAATACTGAAGTTGT 57.439 29.630 0.00 0.16 0.00 3.32
5077 5084 5.582269 TCTTGAAGCTCAATCCTGAATAACG 59.418 40.000 0.00 0.00 35.59 3.18
5460 5468 8.998957 TTATGGTAGGATGGATTTTCCCTATA 57.001 34.615 0.00 0.00 35.03 1.31
5462 5470 7.519355 TCATTATGGTAGGATGGATTTTCCCTA 59.481 37.037 0.00 0.00 35.03 3.53
5463 5471 6.335311 TCATTATGGTAGGATGGATTTTCCCT 59.665 38.462 0.00 0.00 35.03 4.20
5464 5472 6.552008 TCATTATGGTAGGATGGATTTTCCC 58.448 40.000 0.00 0.00 35.03 3.97
5465 5473 9.927081 ATATCATTATGGTAGGATGGATTTTCC 57.073 33.333 0.00 0.00 36.96 3.13
5470 5478 9.434275 TCGTTATATCATTATGGTAGGATGGAT 57.566 33.333 0.00 0.00 0.00 3.41
5471 5479 8.832458 TCGTTATATCATTATGGTAGGATGGA 57.168 34.615 0.00 0.00 0.00 3.41
5472 5480 9.884636 TTTCGTTATATCATTATGGTAGGATGG 57.115 33.333 0.00 0.00 0.00 3.51
5565 5614 0.106619 GCGAGGAAGTCTAGAGGGGA 60.107 60.000 0.00 0.00 0.00 4.81
5606 5655 2.541762 GCATGACCATCGAGTTTCTAGC 59.458 50.000 0.00 0.00 0.00 3.42
5607 5656 3.126831 GGCATGACCATCGAGTTTCTAG 58.873 50.000 0.00 0.00 38.86 2.43
5608 5657 2.481276 CGGCATGACCATCGAGTTTCTA 60.481 50.000 0.00 0.00 39.03 2.10
5609 5658 1.740380 CGGCATGACCATCGAGTTTCT 60.740 52.381 0.00 0.00 39.03 2.52
5665 5714 1.198713 CACCTCCAGTGCTAGTGGAT 58.801 55.000 11.59 0.00 45.99 3.41
5718 5767 3.200825 CCCACTGTTGTCATCCTATTCCT 59.799 47.826 0.00 0.00 0.00 3.36
5719 5768 3.054361 ACCCACTGTTGTCATCCTATTCC 60.054 47.826 0.00 0.00 0.00 3.01
5720 5769 3.941483 CACCCACTGTTGTCATCCTATTC 59.059 47.826 0.00 0.00 0.00 1.75
5721 5770 3.308402 CCACCCACTGTTGTCATCCTATT 60.308 47.826 0.00 0.00 0.00 1.73
5722 5771 2.239654 CCACCCACTGTTGTCATCCTAT 59.760 50.000 0.00 0.00 0.00 2.57
5723 5772 1.628340 CCACCCACTGTTGTCATCCTA 59.372 52.381 0.00 0.00 0.00 2.94
5753 5802 6.054860 ACTAAAGGAGATGTACATGTTGCT 57.945 37.500 14.43 9.00 0.00 3.91
5880 5929 2.704572 ACTATGAAAGCTGTCCACTGC 58.295 47.619 0.17 0.51 40.53 4.40
6088 6137 9.905713 AGCTTTGTTTCTTTGGTCATCTATATA 57.094 29.630 0.00 0.00 0.00 0.86
6089 6138 8.814038 AGCTTTGTTTCTTTGGTCATCTATAT 57.186 30.769 0.00 0.00 0.00 0.86
6231 6282 2.676748 TGAGGGTTGGACTTGCAAAAT 58.323 42.857 0.00 0.00 0.00 1.82
6232 6283 2.151502 TGAGGGTTGGACTTGCAAAA 57.848 45.000 0.00 0.00 0.00 2.44
6585 6678 0.524862 GTGATGCTTCTGCCACCAAG 59.475 55.000 0.88 0.00 38.71 3.61
6693 6786 1.609239 CCAGGAAGTGGCTGGCATA 59.391 57.895 7.33 0.00 40.39 3.14
6794 6887 0.687757 CCACCAGGCTGCTCTAGGTA 60.688 60.000 9.56 0.00 0.00 3.08
7065 7158 5.047235 GTGTATCCTGAACACCTCTTGTAGT 60.047 44.000 0.00 0.00 41.10 2.73
7338 7435 2.187958 TCTGTGCTGCTAACCCAGTAT 58.812 47.619 0.00 0.00 35.28 2.12
7369 7466 8.618561 CAAATCCTTTGCGTTTTCTCGAGAAAA 61.619 37.037 37.30 37.30 40.97 2.29
7370 7467 3.199677 TCCTTTGCGTTTTCTCGAGAAA 58.800 40.909 31.62 31.62 41.77 2.52
7371 7468 2.828877 TCCTTTGCGTTTTCTCGAGAA 58.171 42.857 23.74 23.74 0.00 2.87
7372 7469 2.519377 TCCTTTGCGTTTTCTCGAGA 57.481 45.000 12.08 12.08 0.00 4.04
7373 7470 3.813529 AATCCTTTGCGTTTTCTCGAG 57.186 42.857 5.93 5.93 0.00 4.04
7374 7471 3.884169 CAAATCCTTTGCGTTTTCTCGA 58.116 40.909 0.00 0.00 33.36 4.04
7385 7482 2.093152 GCAATGAAGCGCAAATCCTTTG 59.907 45.455 11.47 12.02 43.44 2.77
7386 7483 2.288948 TGCAATGAAGCGCAAATCCTTT 60.289 40.909 11.47 0.00 34.59 3.11
7387 7484 1.273048 TGCAATGAAGCGCAAATCCTT 59.727 42.857 11.47 1.22 34.59 3.36
7388 7485 0.889994 TGCAATGAAGCGCAAATCCT 59.110 45.000 11.47 0.00 34.59 3.24
7389 7486 1.930567 ATGCAATGAAGCGCAAATCC 58.069 45.000 11.47 0.00 42.37 3.01
7390 7487 2.536130 GCAATGCAATGAAGCGCAAATC 60.536 45.455 11.47 5.45 42.37 2.17
7391 7488 1.395608 GCAATGCAATGAAGCGCAAAT 59.604 42.857 11.47 0.00 42.37 2.32
7392 7489 0.791422 GCAATGCAATGAAGCGCAAA 59.209 45.000 11.47 0.00 42.37 3.68
7393 7490 0.319641 TGCAATGCAATGAAGCGCAA 60.320 45.000 11.47 0.00 42.37 4.85
7394 7491 1.009903 GTGCAATGCAATGAAGCGCA 61.010 50.000 10.44 0.00 41.47 6.09
7395 7492 1.009903 TGTGCAATGCAATGAAGCGC 61.010 50.000 10.44 0.00 41.47 5.92
7396 7493 0.989164 CTGTGCAATGCAATGAAGCG 59.011 50.000 10.44 0.00 41.47 4.68
7397 7494 2.357327 TCTGTGCAATGCAATGAAGC 57.643 45.000 10.44 0.00 41.47 3.86
7398 7495 3.119280 TCCATCTGTGCAATGCAATGAAG 60.119 43.478 17.17 11.78 41.47 3.02
7399 7496 2.826725 TCCATCTGTGCAATGCAATGAA 59.173 40.909 17.17 0.00 41.47 2.57
7400 7497 2.448453 TCCATCTGTGCAATGCAATGA 58.552 42.857 17.17 14.78 41.47 2.57
7401 7498 2.927477 GTTCCATCTGTGCAATGCAATG 59.073 45.455 10.44 10.48 41.47 2.82
7402 7499 2.093869 GGTTCCATCTGTGCAATGCAAT 60.094 45.455 10.44 0.00 41.47 3.56
7403 7500 1.273048 GGTTCCATCTGTGCAATGCAA 59.727 47.619 10.44 0.00 41.47 4.08
7404 7501 0.889994 GGTTCCATCTGTGCAATGCA 59.110 50.000 2.72 2.72 35.60 3.96
7405 7502 1.135199 CAGGTTCCATCTGTGCAATGC 60.135 52.381 0.00 0.00 0.00 3.56
7406 7503 2.163010 GTCAGGTTCCATCTGTGCAATG 59.837 50.000 0.00 0.00 34.15 2.82
7407 7504 2.224843 TGTCAGGTTCCATCTGTGCAAT 60.225 45.455 0.00 0.00 34.15 3.56
7408 7505 1.142667 TGTCAGGTTCCATCTGTGCAA 59.857 47.619 0.00 0.00 34.15 4.08
7409 7506 0.764271 TGTCAGGTTCCATCTGTGCA 59.236 50.000 0.00 0.00 34.15 4.57
7565 7663 1.145325 AGGAGGACCGAACGGATCTAT 59.855 52.381 20.14 6.93 41.83 1.98
7587 7685 9.969001 TTATTAGAAGTAAAATAACACCAGGCT 57.031 29.630 0.00 0.00 0.00 4.58
7632 7730 4.272018 GCATGATAGTTTGTAGCTGGAGTG 59.728 45.833 0.00 0.00 0.00 3.51
7850 7951 1.270412 TGTGCAGTTGTAGGTAACCGG 60.270 52.381 0.00 0.00 37.17 5.28
7928 8029 4.520111 ACAATGAGTAATGTGCAGCTTTGA 59.480 37.500 0.00 0.00 0.00 2.69
7979 8080 6.778069 TCCACCTTACTCTATATGACCTCAAG 59.222 42.308 0.00 0.00 0.00 3.02
8057 8158 6.017026 TCTGTATTGTATCCTTGTAGCTCTCG 60.017 42.308 0.00 0.00 0.00 4.04
8251 8352 3.336694 ACTTATTTTGGGATGGTGGGAGT 59.663 43.478 0.00 0.00 0.00 3.85
8252 8353 3.701040 CACTTATTTTGGGATGGTGGGAG 59.299 47.826 0.00 0.00 0.00 4.30
8253 8354 3.076785 ACACTTATTTTGGGATGGTGGGA 59.923 43.478 0.00 0.00 0.00 4.37
8254 8355 3.440127 ACACTTATTTTGGGATGGTGGG 58.560 45.455 0.00 0.00 0.00 4.61
8255 8356 4.344104 AGACACTTATTTTGGGATGGTGG 58.656 43.478 0.00 0.00 0.00 4.61
8256 8357 5.982890 AAGACACTTATTTTGGGATGGTG 57.017 39.130 0.00 0.00 0.00 4.17
8257 8358 7.238710 AGTTAAGACACTTATTTTGGGATGGT 58.761 34.615 0.00 0.00 0.00 3.55
8258 8359 7.703058 AGTTAAGACACTTATTTTGGGATGG 57.297 36.000 0.00 0.00 0.00 3.51
8259 8360 9.410556 CAAAGTTAAGACACTTATTTTGGGATG 57.589 33.333 0.92 0.00 35.87 3.51
8260 8361 9.143155 ACAAAGTTAAGACACTTATTTTGGGAT 57.857 29.630 19.96 8.06 35.87 3.85
8261 8362 8.528044 ACAAAGTTAAGACACTTATTTTGGGA 57.472 30.769 19.96 0.00 35.87 4.37
8262 8363 9.673454 GTACAAAGTTAAGACACTTATTTTGGG 57.327 33.333 19.96 8.06 35.87 4.12
8296 8397 8.880750 GTCTCAAGTTTAGTTCAACTTTGTACT 58.119 33.333 0.00 6.50 43.17 2.73
8297 8398 8.662141 TGTCTCAAGTTTAGTTCAACTTTGTAC 58.338 33.333 0.00 0.00 43.17 2.90
8298 8399 8.662141 GTGTCTCAAGTTTAGTTCAACTTTGTA 58.338 33.333 0.00 0.00 43.17 2.41
8299 8400 7.390718 AGTGTCTCAAGTTTAGTTCAACTTTGT 59.609 33.333 0.00 0.00 43.17 2.83
8300 8401 7.752695 AGTGTCTCAAGTTTAGTTCAACTTTG 58.247 34.615 0.00 0.00 43.17 2.77
8301 8402 7.923414 AGTGTCTCAAGTTTAGTTCAACTTT 57.077 32.000 0.00 0.00 43.17 2.66
8302 8403 7.923414 AAGTGTCTCAAGTTTAGTTCAACTT 57.077 32.000 0.00 0.00 46.00 2.66
8303 8404 9.614792 AATAAGTGTCTCAAGTTTAGTTCAACT 57.385 29.630 0.00 0.00 38.74 3.16
8307 8408 9.665264 CCAAAATAAGTGTCTCAAGTTTAGTTC 57.335 33.333 0.00 0.00 0.00 3.01
8308 8409 8.630037 CCCAAAATAAGTGTCTCAAGTTTAGTT 58.370 33.333 0.00 0.00 0.00 2.24
8309 8410 7.996644 TCCCAAAATAAGTGTCTCAAGTTTAGT 59.003 33.333 0.00 0.00 0.00 2.24
8310 8411 8.391075 TCCCAAAATAAGTGTCTCAAGTTTAG 57.609 34.615 0.00 0.00 0.00 1.85
8311 8412 8.754991 TTCCCAAAATAAGTGTCTCAAGTTTA 57.245 30.769 0.00 0.00 0.00 2.01
8312 8413 7.201911 CCTTCCCAAAATAAGTGTCTCAAGTTT 60.202 37.037 0.00 0.00 0.00 2.66
8313 8414 6.265422 CCTTCCCAAAATAAGTGTCTCAAGTT 59.735 38.462 0.00 0.00 0.00 2.66
8314 8415 5.770162 CCTTCCCAAAATAAGTGTCTCAAGT 59.230 40.000 0.00 0.00 0.00 3.16
8315 8416 6.003950 TCCTTCCCAAAATAAGTGTCTCAAG 58.996 40.000 0.00 0.00 0.00 3.02
8316 8417 5.947663 TCCTTCCCAAAATAAGTGTCTCAA 58.052 37.500 0.00 0.00 0.00 3.02
8317 8418 5.560724 CTCCTTCCCAAAATAAGTGTCTCA 58.439 41.667 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.