Multiple sequence alignment - TraesCS5B01G160400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G160400 chr5B 100.000 3455 0 0 1361 4815 295383144 295379690 0.000000e+00 6381.0
1 TraesCS5B01G160400 chr5B 100.000 733 0 0 409 1141 295384096 295383364 0.000000e+00 1354.0
2 TraesCS5B01G160400 chr5B 100.000 126 0 0 1 126 295384504 295384379 2.900000e-57 233.0
3 TraesCS5B01G160400 chr5B 89.091 55 3 3 4609 4662 611866288 611866236 1.120000e-06 65.8
4 TraesCS5B01G160400 chr5A 93.816 3509 110 42 1361 4813 348720309 348716852 0.000000e+00 5179.0
5 TraesCS5B01G160400 chr5A 93.658 473 25 2 669 1141 348720830 348720363 0.000000e+00 702.0
6 TraesCS5B01G160400 chr5A 96.617 266 4 1 409 674 512393673 512393933 2.060000e-118 436.0
7 TraesCS5B01G160400 chr5A 94.515 237 12 1 434 669 512393265 512393029 9.850000e-97 364.0
8 TraesCS5B01G160400 chr5A 96.032 126 5 0 1 126 512393172 512393297 6.320000e-49 206.0
9 TraesCS5B01G160400 chr5A 77.833 203 37 8 4613 4813 350525984 350526180 8.470000e-23 119.0
10 TraesCS5B01G160400 chr5A 100.000 31 0 0 4611 4641 537248308 537248278 1.870000e-04 58.4
11 TraesCS5B01G160400 chr5D 93.005 1644 32 35 2585 4190 262840388 262838790 0.000000e+00 2322.0
12 TraesCS5B01G160400 chr5D 95.543 875 17 6 1361 2220 262841956 262841089 0.000000e+00 1380.0
13 TraesCS5B01G160400 chr5D 96.535 635 12 3 4189 4813 262838696 262838062 0.000000e+00 1042.0
14 TraesCS5B01G160400 chr5D 93.263 475 23 6 669 1141 262842477 262842010 0.000000e+00 691.0
15 TraesCS5B01G160400 chr5D 96.035 227 7 1 2286 2512 262840912 262840688 7.610000e-98 368.0
16 TraesCS5B01G160400 chr5D 88.172 93 1 4 2517 2599 262840629 262840537 8.530000e-18 102.0
17 TraesCS5B01G160400 chr5D 100.000 43 0 0 2232 2274 262841098 262841056 3.990000e-11 80.5
18 TraesCS5B01G160400 chr4B 96.923 260 5 1 409 668 633291467 633291211 2.660000e-117 433.0
19 TraesCS5B01G160400 chr4B 98.413 126 2 0 1 126 633292204 633292079 6.270000e-54 222.0
20 TraesCS5B01G160400 chr2A 96.124 258 4 2 412 669 283303974 283303723 2.680000e-112 416.0
21 TraesCS5B01G160400 chr2A 98.413 126 2 0 1 126 283304526 283304401 6.270000e-54 222.0
22 TraesCS5B01G160400 chr2A 88.889 54 3 3 4610 4662 725890649 725890598 4.020000e-06 63.9
23 TraesCS5B01G160400 chr4A 96.639 238 7 1 432 668 672516011 672516248 1.260000e-105 394.0
24 TraesCS5B01G160400 chr4A 94.561 239 11 2 432 668 32641326 32641088 7.610000e-98 368.0
25 TraesCS5B01G160400 chr7A 95.397 239 10 1 432 669 209404407 209404169 3.520000e-101 379.0
26 TraesCS5B01G160400 chr7A 94.262 244 8 3 430 669 209405243 209405484 7.610000e-98 368.0
27 TraesCS5B01G160400 chr7A 93.023 43 2 1 4770 4811 512257966 512258008 1.450000e-05 62.1
28 TraesCS5B01G160400 chr1A 93.416 243 10 3 430 668 45841523 45841283 5.930000e-94 355.0
29 TraesCS5B01G160400 chr1A 97.619 126 3 0 1 126 125159109 125158984 2.920000e-52 217.0
30 TraesCS5B01G160400 chr1A 95.745 94 4 0 1 94 97805191 97805098 8.350000e-33 152.0
31 TraesCS5B01G160400 chr7B 94.215 121 2 2 1 118 481845943 481845825 3.830000e-41 180.0
32 TraesCS5B01G160400 chr7B 94.949 99 2 1 1 96 284939492 284939590 8.350000e-33 152.0
33 TraesCS5B01G160400 chr2B 94.175 103 4 2 1 102 78000394 78000293 6.450000e-34 156.0
34 TraesCS5B01G160400 chr2B 76.961 204 37 5 4614 4810 717496139 717496339 1.830000e-19 108.0
35 TraesCS5B01G160400 chr1D 91.743 109 5 1 1 109 419029130 419029026 1.080000e-31 148.0
36 TraesCS5B01G160400 chr3D 81.159 138 18 7 4682 4812 73456087 73456223 2.370000e-18 104.0
37 TraesCS5B01G160400 chr3D 92.683 41 0 2 4611 4651 535506217 535506254 6.730000e-04 56.5
38 TraesCS5B01G160400 chr6B 89.583 48 4 1 4611 4658 211810942 211810896 5.200000e-05 60.2
39 TraesCS5B01G160400 chr6D 88.000 50 3 3 4610 4658 59026466 59026513 6.730000e-04 56.5
40 TraesCS5B01G160400 chr1B 86.538 52 6 1 4611 4662 553454121 553454071 6.730000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G160400 chr5B 295379690 295384504 4814 True 2656.000000 6381 100.000000 1 4815 3 chr5B.!!$R2 4814
1 TraesCS5B01G160400 chr5A 348716852 348720830 3978 True 2940.500000 5179 93.737000 669 4813 2 chr5A.!!$R3 4144
2 TraesCS5B01G160400 chr5A 512393172 512393933 761 False 321.000000 436 96.324500 1 674 2 chr5A.!!$F2 673
3 TraesCS5B01G160400 chr5D 262838062 262842477 4415 True 855.071429 2322 94.650429 669 4813 7 chr5D.!!$R1 4144
4 TraesCS5B01G160400 chr4B 633291211 633292204 993 True 327.500000 433 97.668000 1 668 2 chr4B.!!$R1 667
5 TraesCS5B01G160400 chr2A 283303723 283304526 803 True 319.000000 416 97.268500 1 669 2 chr2A.!!$R2 668

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
929 1262 0.391927 CCGCCAATCCTCGTGGTTAA 60.392 55.0 2.99 0.00 38.50 2.01 F
2224 2580 0.263172 TGACATCCTCCTCCTCCTCC 59.737 60.0 0.00 0.00 0.00 4.30 F
2340 2840 0.317160 ATGTGCCTGTCGAGTCGAAA 59.683 50.0 18.42 11.62 37.72 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2308 2808 0.108992 GGCACATGAACACCAGCATG 60.109 55.000 0.0 0.0 45.56 4.06 R
3346 4103 1.067416 GCCATAGCCGTCGTCATCA 59.933 57.895 0.0 0.0 0.00 3.07 R
4210 5077 4.455533 GCTGTCACCAATGTTCACTCATTA 59.544 41.667 0.0 0.0 36.44 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 0.966179 GCAATCGGGTCCCTGTTTTT 59.034 50.000 6.29 0.00 0.00 1.94
556 888 1.691976 TCGGGCTCTTTTCAGACTTGA 59.308 47.619 0.00 0.00 0.00 3.02
647 979 3.690487 ACGGTTCCGTGAATTGTGA 57.310 47.368 16.22 0.00 41.38 3.58
753 1086 7.014230 TGGTTTCTTATCTTGGAAAAGACAAGG 59.986 37.037 6.65 0.00 44.13 3.61
759 1092 2.746279 TGGAAAAGACAAGGCAGGAA 57.254 45.000 0.00 0.00 0.00 3.36
801 1134 2.427506 ACATTTCTTCCTTCTCGTGCC 58.572 47.619 0.00 0.00 0.00 5.01
926 1259 3.319198 ACCGCCAATCCTCGTGGT 61.319 61.111 2.99 0.00 38.50 4.16
928 1261 1.219664 CCGCCAATCCTCGTGGTTA 59.780 57.895 2.99 0.00 38.50 2.85
929 1262 0.391927 CCGCCAATCCTCGTGGTTAA 60.392 55.000 2.99 0.00 38.50 2.01
961 1294 1.404035 GCTGAACGGTGGTTTGTTTCT 59.596 47.619 0.00 0.00 36.24 2.52
978 1311 4.145052 GTTTCTCCCTTGTTCCAGACATT 58.855 43.478 0.00 0.00 38.26 2.71
1056 1389 2.151502 AGAGGCTCTTCATCTCCGAA 57.848 50.000 12.24 0.00 27.98 4.30
1074 1407 1.760029 GAACCCAAGCAGAAACCCAAA 59.240 47.619 0.00 0.00 0.00 3.28
1088 1421 3.895704 ACCCAAACCAGACAAGGTATT 57.104 42.857 0.00 0.00 42.25 1.89
1107 1440 6.070424 AGGTATTGTCCCAATCTCGTTTCTTA 60.070 38.462 0.00 0.00 0.00 2.10
1114 1447 7.710907 TGTCCCAATCTCGTTTCTTATAATCTG 59.289 37.037 0.00 0.00 0.00 2.90
1115 1448 7.711339 GTCCCAATCTCGTTTCTTATAATCTGT 59.289 37.037 0.00 0.00 0.00 3.41
1118 1451 7.041780 CCAATCTCGTTTCTTATAATCTGTGGG 60.042 40.741 0.00 0.00 0.00 4.61
1135 1468 9.439500 AATCTGTGGGAAATTCATGTAAAATTG 57.561 29.630 0.00 0.00 0.00 2.32
1137 1470 6.528321 TGTGGGAAATTCATGTAAAATTGCA 58.472 32.000 0.00 0.00 0.00 4.08
1476 1809 3.046087 GAGCAGAGCAAGCACGCA 61.046 61.111 0.00 0.00 0.00 5.24
1674 2007 1.599071 CGCGGATACCTCGTAAGTACA 59.401 52.381 0.00 0.00 39.48 2.90
1686 2019 5.288712 CCTCGTAAGTACAGTAAGCATTGTG 59.711 44.000 0.00 0.00 39.48 3.33
1696 2029 0.835941 AAGCATTGTGGTTGGGCAAA 59.164 45.000 0.00 0.00 36.63 3.68
1860 2198 4.500116 GGCCTCGAGTCGCTGGTC 62.500 72.222 20.14 16.36 0.00 4.02
2215 2571 2.094854 CAGCTTTGCTTTGACATCCTCC 60.095 50.000 0.00 0.00 36.40 4.30
2216 2572 2.165998 GCTTTGCTTTGACATCCTCCT 58.834 47.619 0.00 0.00 0.00 3.69
2217 2573 2.163211 GCTTTGCTTTGACATCCTCCTC 59.837 50.000 0.00 0.00 0.00 3.71
2218 2574 2.496899 TTGCTTTGACATCCTCCTCC 57.503 50.000 0.00 0.00 0.00 4.30
2219 2575 1.661463 TGCTTTGACATCCTCCTCCT 58.339 50.000 0.00 0.00 0.00 3.69
2220 2576 1.556911 TGCTTTGACATCCTCCTCCTC 59.443 52.381 0.00 0.00 0.00 3.71
2221 2577 1.134250 GCTTTGACATCCTCCTCCTCC 60.134 57.143 0.00 0.00 0.00 4.30
2222 2578 2.476199 CTTTGACATCCTCCTCCTCCT 58.524 52.381 0.00 0.00 0.00 3.69
2223 2579 2.166907 TTGACATCCTCCTCCTCCTC 57.833 55.000 0.00 0.00 0.00 3.71
2224 2580 0.263172 TGACATCCTCCTCCTCCTCC 59.737 60.000 0.00 0.00 0.00 4.30
2225 2581 0.560688 GACATCCTCCTCCTCCTCCT 59.439 60.000 0.00 0.00 0.00 3.69
2226 2582 0.560688 ACATCCTCCTCCTCCTCCTC 59.439 60.000 0.00 0.00 0.00 3.71
2340 2840 0.317160 ATGTGCCTGTCGAGTCGAAA 59.683 50.000 18.42 11.62 37.72 3.46
2513 3013 4.377738 CGCTCTGCATTATCATTACGCAAT 60.378 41.667 0.00 0.00 31.10 3.56
2515 3015 5.341462 GCTCTGCATTATCATTACGCAATTG 59.659 40.000 0.00 0.00 31.10 2.32
2643 3370 1.376553 GGACAGGAGGCTCAAGCAC 60.377 63.158 17.69 5.88 44.36 4.40
2692 3419 6.812998 AGTGCAAGTAGTACTACAGTGAAAA 58.187 36.000 29.87 15.42 41.71 2.29
2725 3452 1.149361 GCATATTTCGACCGCCGTGA 61.149 55.000 0.00 0.00 39.75 4.35
3028 3771 1.227380 GCAGTACGCCTCCATCCAG 60.227 63.158 0.00 0.00 32.94 3.86
3042 3798 4.928601 TCCATCCAGAACGTAAATACTCG 58.071 43.478 0.00 0.00 0.00 4.18
3100 3857 3.653009 CACGCACTGTGGCTGTGG 61.653 66.667 10.21 2.27 45.21 4.17
3101 3858 4.175337 ACGCACTGTGGCTGTGGT 62.175 61.111 10.21 2.76 34.61 4.16
3102 3859 3.653009 CGCACTGTGGCTGTGGTG 61.653 66.667 10.21 0.00 34.61 4.17
3103 3860 2.516930 GCACTGTGGCTGTGGTGT 60.517 61.111 10.21 0.00 34.61 4.16
3104 3861 2.837883 GCACTGTGGCTGTGGTGTG 61.838 63.158 10.21 0.00 34.61 3.82
3105 3862 1.153188 CACTGTGGCTGTGGTGTGA 60.153 57.895 0.00 0.00 31.27 3.58
3134 3891 4.264460 ACAAAACAAACAAACTCTGGCA 57.736 36.364 0.00 0.00 0.00 4.92
3135 3892 3.993736 ACAAAACAAACAAACTCTGGCAC 59.006 39.130 0.00 0.00 0.00 5.01
3361 4118 1.000163 GACCATGATGACGACGGCTAT 60.000 52.381 0.65 0.00 0.00 2.97
4049 4808 7.285069 TGATCAACGTTTGTGAATAAGTAACG 58.715 34.615 0.00 0.00 44.97 3.18
4643 5512 1.308069 GCAGATCCCGCAAAAGCTCA 61.308 55.000 0.00 0.00 0.00 4.26
4676 5545 0.882927 TTCCGTCCGTTTTGCAGGAG 60.883 55.000 0.00 0.00 37.18 3.69
4712 5581 3.327757 AGCCTGAACAGATCCACTAAACA 59.672 43.478 3.19 0.00 0.00 2.83
4718 5587 3.074412 ACAGATCCACTAAACAAAGCCG 58.926 45.455 0.00 0.00 0.00 5.52
4720 5589 1.132453 GATCCACTAAACAAAGCCGGC 59.868 52.381 21.89 21.89 0.00 6.13
4779 5656 3.015145 GGAGCTAGGGGTTGGCCA 61.015 66.667 0.00 0.00 36.17 5.36
4813 5690 1.004361 AAACCCTATCCCCTCCGCT 59.996 57.895 0.00 0.00 0.00 5.52
4814 5691 1.345715 AAACCCTATCCCCTCCGCTG 61.346 60.000 0.00 0.00 0.00 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
459 791 2.009681 AAGCAATCGGGTCCCTTTTT 57.990 45.000 6.29 0.00 0.00 1.94
753 1086 1.347378 TGGATTTGGGCTTTTTCCTGC 59.653 47.619 0.00 0.00 0.00 4.85
759 1092 2.908351 AGAGCATTGGATTTGGGCTTTT 59.092 40.909 0.00 0.00 34.44 2.27
801 1134 2.094597 TCCATGCGCAAATCAAGAAAGG 60.095 45.455 17.11 3.91 0.00 3.11
864 1197 2.972625 TCTACGGAGATGTTGGCAAAG 58.027 47.619 0.00 0.00 0.00 2.77
926 1259 5.703592 ACCGTTCAGCAGAAATGTATGTTAA 59.296 36.000 0.00 0.00 35.08 2.01
928 1261 4.072131 ACCGTTCAGCAGAAATGTATGTT 58.928 39.130 0.00 0.00 35.08 2.71
929 1262 3.436704 CACCGTTCAGCAGAAATGTATGT 59.563 43.478 0.00 0.00 35.08 2.29
961 1294 2.040278 CTGGAATGTCTGGAACAAGGGA 59.960 50.000 0.00 0.00 42.37 4.20
978 1311 4.242336 TCTTCTGTCTATCTGCTCTGGA 57.758 45.455 0.00 0.00 0.00 3.86
1056 1389 1.119684 GTTTGGGTTTCTGCTTGGGT 58.880 50.000 0.00 0.00 0.00 4.51
1088 1421 7.710907 CAGATTATAAGAAACGAGATTGGGACA 59.289 37.037 0.00 0.00 0.00 4.02
1099 1432 8.673711 TGAATTTCCCACAGATTATAAGAAACG 58.326 33.333 0.00 0.00 0.00 3.60
1114 1447 6.092533 CCTGCAATTTTACATGAATTTCCCAC 59.907 38.462 0.00 0.00 0.00 4.61
1115 1448 6.171921 CCTGCAATTTTACATGAATTTCCCA 58.828 36.000 0.00 0.00 0.00 4.37
1674 2007 1.256812 GCCCAACCACAATGCTTACT 58.743 50.000 0.00 0.00 0.00 2.24
1686 2019 4.452114 CAGCTTTAATTTCTTTGCCCAACC 59.548 41.667 0.00 0.00 0.00 3.77
1696 2029 3.507622 GGACACAGCCAGCTTTAATTTCT 59.492 43.478 0.00 0.00 0.00 2.52
1860 2198 4.113815 TGCCGGGCCTGGATCTTG 62.114 66.667 36.08 6.87 0.00 3.02
1975 2319 2.863401 AAAAAGTGGCGAGTGAAACC 57.137 45.000 0.00 0.00 37.80 3.27
2005 2349 8.231837 GTGACCAGCGAAACAGTTATTTATTTA 58.768 33.333 0.00 0.00 0.00 1.40
2016 2360 1.143305 CAGAGTGACCAGCGAAACAG 58.857 55.000 0.00 0.00 0.00 3.16
2215 2571 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
2216 2572 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
2217 2573 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
2218 2574 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
2219 2575 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
2220 2576 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
2221 2577 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
2222 2578 1.087725 AGGAGGAGGAGGAGGAGGA 59.912 63.158 0.00 0.00 0.00 3.71
2223 2579 1.232792 CAGGAGGAGGAGGAGGAGG 59.767 68.421 0.00 0.00 0.00 4.30
2224 2580 0.859760 ATCAGGAGGAGGAGGAGGAG 59.140 60.000 0.00 0.00 0.00 3.69
2225 2581 0.560193 CATCAGGAGGAGGAGGAGGA 59.440 60.000 0.00 0.00 0.00 3.71
2226 2582 0.264359 ACATCAGGAGGAGGAGGAGG 59.736 60.000 0.00 0.00 0.00 4.30
2308 2808 0.108992 GGCACATGAACACCAGCATG 60.109 55.000 0.00 0.00 45.56 4.06
2312 2812 0.877071 GACAGGCACATGAACACCAG 59.123 55.000 0.00 0.00 0.00 4.00
2390 2890 2.029964 AACGAACCGCGGACACAT 59.970 55.556 35.90 12.19 46.49 3.21
2424 2924 0.392461 GTCGGCACATTTGGGCTCTA 60.392 55.000 4.57 0.00 45.56 2.43
2425 2925 1.675641 GTCGGCACATTTGGGCTCT 60.676 57.895 4.57 0.00 45.56 4.09
2557 3111 9.131791 ACCTCTGTAAACAAATGTTTTAGTGAT 57.868 29.630 15.92 2.56 45.07 3.06
2558 3112 8.514330 ACCTCTGTAAACAAATGTTTTAGTGA 57.486 30.769 15.92 9.18 45.07 3.41
2606 3333 1.465689 CCTGCTGTGCCGATTTTTACG 60.466 52.381 0.00 0.00 0.00 3.18
2619 3346 2.203907 AGCCTCCTGTCCTGCTGT 60.204 61.111 0.00 0.00 31.70 4.40
2622 3349 1.078567 CTTGAGCCTCCTGTCCTGC 60.079 63.158 0.00 0.00 0.00 4.85
2664 3391 6.148976 TCACTGTAGTACTACTTGCACTAGTG 59.851 42.308 28.56 27.27 37.00 2.74
2692 3419 6.961554 GTCGAAATATGCGATTTCACTTTTCT 59.038 34.615 18.66 0.00 40.19 2.52
2699 3426 2.033236 GCGGTCGAAATATGCGATTTCA 60.033 45.455 18.66 7.74 40.19 2.69
2702 3429 0.865769 GGCGGTCGAAATATGCGATT 59.134 50.000 4.52 0.00 40.19 3.34
3042 3798 8.035394 TGGAATGTTGACACTTAGAGATTACTC 58.965 37.037 0.00 0.00 42.90 2.59
3087 3844 1.153188 TCACACCACAGCCACAGTG 60.153 57.895 0.00 0.00 36.76 3.66
3095 3852 2.355197 TGTTTGTCAGTCACACCACAG 58.645 47.619 0.00 0.00 33.41 3.66
3096 3853 2.481289 TGTTTGTCAGTCACACCACA 57.519 45.000 0.00 0.00 33.41 4.17
3097 3854 3.840890 TTTGTTTGTCAGTCACACCAC 57.159 42.857 0.00 0.00 33.41 4.16
3098 3855 3.570125 TGTTTTGTTTGTCAGTCACACCA 59.430 39.130 0.00 0.00 33.41 4.17
3099 3856 4.167554 TGTTTTGTTTGTCAGTCACACC 57.832 40.909 0.00 0.00 33.41 4.16
3100 3857 5.460419 TGTTTGTTTTGTTTGTCAGTCACAC 59.540 36.000 0.00 0.00 33.41 3.82
3101 3858 5.592054 TGTTTGTTTTGTTTGTCAGTCACA 58.408 33.333 0.00 0.00 0.00 3.58
3102 3859 6.517914 TTGTTTGTTTTGTTTGTCAGTCAC 57.482 33.333 0.00 0.00 0.00 3.67
3103 3860 6.758886 AGTTTGTTTGTTTTGTTTGTCAGTCA 59.241 30.769 0.00 0.00 0.00 3.41
3104 3861 7.169140 AGAGTTTGTTTGTTTTGTTTGTCAGTC 59.831 33.333 0.00 0.00 0.00 3.51
3105 3862 6.983890 AGAGTTTGTTTGTTTTGTTTGTCAGT 59.016 30.769 0.00 0.00 0.00 3.41
3134 3891 2.825075 TTCTCCTGCCATGCATGCGT 62.825 55.000 21.69 10.53 38.13 5.24
3135 3892 2.060004 CTTCTCCTGCCATGCATGCG 62.060 60.000 21.69 15.04 38.13 4.73
3346 4103 1.067416 GCCATAGCCGTCGTCATCA 59.933 57.895 0.00 0.00 0.00 3.07
4049 4808 6.431543 TCACCGAATAGACCTTGAGAGATATC 59.568 42.308 0.00 0.00 0.00 1.63
4210 5077 4.455533 GCTGTCACCAATGTTCACTCATTA 59.544 41.667 0.00 0.00 36.44 1.90
4643 5512 0.038599 ACGGAATTTTAAGGGCCGGT 59.961 50.000 1.90 0.00 45.80 5.28
4690 5559 3.327757 TGTTTAGTGGATCTGTTCAGGCT 59.672 43.478 0.00 0.00 0.00 4.58
4712 5581 1.531128 TTTTTACGGGGCCGGCTTT 60.531 52.632 28.56 10.61 44.69 3.51
4738 5608 2.437002 GTGGATTTGCGGGCCGTA 60.437 61.111 28.82 22.20 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.