Multiple sequence alignment - TraesCS5B01G160100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G160100 chr5B 100.000 9232 0 0 1 9232 295105224 295114455 0.000000e+00 17049.0
1 TraesCS5B01G160100 chr5B 94.979 717 34 2 8408 9122 277632889 277633605 0.000000e+00 1123.0
2 TraesCS5B01G160100 chr5B 94.262 122 6 1 6949 7069 110112830 110112951 1.580000e-42 185.0
3 TraesCS5B01G160100 chr5B 93.182 88 6 0 775 862 222371282 222371369 7.520000e-26 130.0
4 TraesCS5B01G160100 chr5D 97.459 5668 113 14 879 6536 261986132 261991778 0.000000e+00 9640.0
5 TraesCS5B01G160100 chr5D 92.505 974 44 6 7230 8177 261992472 261993442 0.000000e+00 1367.0
6 TraesCS5B01G160100 chr5D 94.840 717 35 2 8408 9122 371281099 371281815 0.000000e+00 1118.0
7 TraesCS5B01G160100 chr5D 94.499 709 38 1 8415 9122 363182235 363182943 0.000000e+00 1092.0
8 TraesCS5B01G160100 chr5D 90.459 545 44 7 232 773 261985575 261986114 0.000000e+00 712.0
9 TraesCS5B01G160100 chr5D 90.848 448 18 11 6513 6954 261991784 261992214 6.220000e-161 579.0
10 TraesCS5B01G160100 chr5D 94.512 164 8 1 8074 8237 261993436 261993598 1.540000e-62 252.0
11 TraesCS5B01G160100 chr5D 95.763 118 5 0 8289 8406 261993607 261993724 3.400000e-44 191.0
12 TraesCS5B01G160100 chr5D 90.698 129 10 2 6947 7074 71560401 71560528 4.430000e-38 171.0
13 TraesCS5B01G160100 chr5D 94.186 86 5 0 775 860 369429139 369429224 2.090000e-26 132.0
14 TraesCS5B01G160100 chr5D 90.323 93 9 0 775 867 415615028 415615120 1.260000e-23 122.0
15 TraesCS5B01G160100 chr5D 86.735 98 0 4 7068 7153 261992213 261992309 7.630000e-16 97.1
16 TraesCS5B01G160100 chr5A 96.725 5802 122 19 1182 6954 347452877 347458639 0.000000e+00 9600.0
17 TraesCS5B01G160100 chr5A 91.874 1206 49 16 7230 8400 347458897 347460088 0.000000e+00 1639.0
18 TraesCS5B01G160100 chr5A 88.728 346 28 10 300 641 347411604 347411942 6.670000e-111 412.0
19 TraesCS5B01G160100 chr5A 92.000 250 7 3 919 1160 347452255 347452499 1.150000e-88 339.0
20 TraesCS5B01G160100 chr5A 92.135 89 6 1 779 867 702581618 702581705 3.500000e-24 124.0
21 TraesCS5B01G160100 chr5A 85.859 99 1 5 7068 7153 347458638 347458736 9.870000e-15 93.5
22 TraesCS5B01G160100 chr5A 76.087 184 36 5 7162 7340 654384241 654384421 1.280000e-13 89.8
23 TraesCS5B01G160100 chr6A 94.854 719 35 2 8406 9122 610915751 610916469 0.000000e+00 1122.0
24 TraesCS5B01G160100 chr6A 93.443 183 11 1 317 498 307990182 307990364 4.250000e-68 270.0
25 TraesCS5B01G160100 chr6D 94.840 717 35 2 8408 9122 72032925 72033641 0.000000e+00 1118.0
26 TraesCS5B01G160100 chr6D 92.800 125 5 3 6952 7074 450559485 450559607 2.650000e-40 178.0
27 TraesCS5B01G160100 chr3B 94.825 715 36 1 8409 9122 245965695 245966409 0.000000e+00 1114.0
28 TraesCS5B01G160100 chr3B 92.126 127 9 1 6948 7073 93248789 93248915 2.650000e-40 178.0
29 TraesCS5B01G160100 chr1D 94.561 717 37 2 8408 9122 107614133 107613417 0.000000e+00 1107.0
30 TraesCS5B01G160100 chr1D 92.800 125 8 1 6946 7069 401658591 401658467 7.370000e-41 180.0
31 TraesCS5B01G160100 chr1D 86.131 137 16 3 7226 7360 240611272 240611407 2.690000e-30 145.0
32 TraesCS5B01G160100 chr1D 92.135 89 7 0 775 863 12312557 12312469 9.730000e-25 126.0
33 TraesCS5B01G160100 chr6B 94.421 717 38 2 8408 9122 413735777 413736493 0.000000e+00 1101.0
34 TraesCS5B01G160100 chr7D 94.003 717 40 3 8408 9122 95086379 95085664 0.000000e+00 1083.0
35 TraesCS5B01G160100 chr7D 88.889 288 28 3 214 498 623701676 623701390 1.470000e-92 351.0
36 TraesCS5B01G160100 chr7D 92.742 124 8 1 6947 7069 433882946 433883069 2.650000e-40 178.0
37 TraesCS5B01G160100 chr7D 87.218 133 14 2 7230 7360 288465302 288465433 2.080000e-31 148.0
38 TraesCS5B01G160100 chr7D 80.288 208 30 6 7160 7360 582034264 582034061 7.470000e-31 147.0
39 TraesCS5B01G160100 chr7D 91.304 92 7 1 775 865 190163130 190163221 3.500000e-24 124.0
40 TraesCS5B01G160100 chr7D 100.000 28 0 0 6927 6954 329500222 329500195 1.700000e-02 52.8
41 TraesCS5B01G160100 chr3A 87.676 568 45 10 215 758 431961117 431960551 1.010000e-178 638.0
42 TraesCS5B01G160100 chr3A 89.362 47 3 2 7381 7426 666224505 666224460 3.600000e-04 58.4
43 TraesCS5B01G160100 chr4A 93.367 196 13 0 303 498 29793888 29793693 3.260000e-74 291.0
44 TraesCS5B01G160100 chr4A 93.023 43 2 1 7381 7422 37785979 37785937 2.780000e-05 62.1
45 TraesCS5B01G160100 chr7A 92.893 197 13 1 303 498 380284314 380284510 1.520000e-72 285.0
46 TraesCS5B01G160100 chr7A 97.368 38 0 1 7381 7417 719589414 719589377 7.740000e-06 63.9
47 TraesCS5B01G160100 chr4D 84.343 198 24 4 7162 7354 363594888 363595083 4.400000e-43 187.0
48 TraesCS5B01G160100 chr4D 87.597 129 15 1 7230 7358 179848367 179848240 2.080000e-31 148.0
49 TraesCS5B01G160100 chr4D 80.749 187 26 8 7175 7358 481072936 481073115 4.500000e-28 137.0
50 TraesCS5B01G160100 chr4D 78.261 138 26 3 7189 7323 230490146 230490010 1.650000e-12 86.1
51 TraesCS5B01G160100 chr2D 94.017 117 7 0 6953 7069 61804248 61804364 2.650000e-40 178.0
52 TraesCS5B01G160100 chr2D 87.919 149 15 3 6934 7081 489410206 489410060 1.230000e-38 172.0
53 TraesCS5B01G160100 chr2D 93.258 89 5 1 775 863 643762830 643762743 7.520000e-26 130.0
54 TraesCS5B01G160100 chr2D 92.135 89 7 0 775 863 52051391 52051479 9.730000e-25 126.0
55 TraesCS5B01G160100 chr2A 82.266 203 31 5 7162 7360 419462352 419462553 4.430000e-38 171.0
56 TraesCS5B01G160100 chr2A 95.122 41 0 2 7381 7420 398587731 398587770 7.740000e-06 63.9
57 TraesCS5B01G160100 chr2A 95.122 41 0 2 7381 7420 398743251 398743212 7.740000e-06 63.9
58 TraesCS5B01G160100 chr1B 88.028 142 15 2 6934 7074 143050407 143050267 5.730000e-37 167.0
59 TraesCS5B01G160100 chr1B 86.957 138 14 4 7227 7360 333599823 333599686 1.610000e-32 152.0
60 TraesCS5B01G160100 chr1B 94.253 87 5 0 775 861 572529444 572529358 5.820000e-27 134.0
61 TraesCS5B01G160100 chr1B 77.075 253 42 12 214 458 552109300 552109544 2.090000e-26 132.0
62 TraesCS5B01G160100 chr1B 97.297 37 1 0 7380 7416 142024846 142024810 7.740000e-06 63.9
63 TraesCS5B01G160100 chr7B 87.970 133 13 3 7230 7360 363237726 363237595 4.460000e-33 154.0
64 TraesCS5B01G160100 chr7B 78.138 247 32 20 224 458 216597837 216598073 4.500000e-28 137.0
65 TraesCS5B01G160100 chr3D 81.503 173 26 4 7192 7360 401881704 401881874 4.500000e-28 137.0
66 TraesCS5B01G160100 chr3D 87.037 54 4 3 7371 7421 389208233 389208180 3.600000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G160100 chr5B 295105224 295114455 9231 False 17049.000000 17049 100.000000 1 9232 1 chr5B.!!$F4 9231
1 TraesCS5B01G160100 chr5B 277632889 277633605 716 False 1123.000000 1123 94.979000 8408 9122 1 chr5B.!!$F3 714
2 TraesCS5B01G160100 chr5D 261985575 261993724 8149 False 1834.014286 9640 92.611571 232 8406 7 chr5D.!!$F6 8174
3 TraesCS5B01G160100 chr5D 371281099 371281815 716 False 1118.000000 1118 94.840000 8408 9122 1 chr5D.!!$F4 714
4 TraesCS5B01G160100 chr5D 363182235 363182943 708 False 1092.000000 1092 94.499000 8415 9122 1 chr5D.!!$F2 707
5 TraesCS5B01G160100 chr5A 347452255 347460088 7833 False 2917.875000 9600 91.614500 919 8400 4 chr5A.!!$F4 7481
6 TraesCS5B01G160100 chr6A 610915751 610916469 718 False 1122.000000 1122 94.854000 8406 9122 1 chr6A.!!$F2 716
7 TraesCS5B01G160100 chr6D 72032925 72033641 716 False 1118.000000 1118 94.840000 8408 9122 1 chr6D.!!$F1 714
8 TraesCS5B01G160100 chr3B 245965695 245966409 714 False 1114.000000 1114 94.825000 8409 9122 1 chr3B.!!$F2 713
9 TraesCS5B01G160100 chr1D 107613417 107614133 716 True 1107.000000 1107 94.561000 8408 9122 1 chr1D.!!$R2 714
10 TraesCS5B01G160100 chr6B 413735777 413736493 716 False 1101.000000 1101 94.421000 8408 9122 1 chr6B.!!$F1 714
11 TraesCS5B01G160100 chr7D 95085664 95086379 715 True 1083.000000 1083 94.003000 8408 9122 1 chr7D.!!$R1 714
12 TraesCS5B01G160100 chr3A 431960551 431961117 566 True 638.000000 638 87.676000 215 758 1 chr3A.!!$R1 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
172 173 0.890090 GACGACGAGGGGGATCTAGG 60.890 65.000 0.00 0.00 0.00 3.02 F
1365 1758 0.891904 TTGTTTTAGCTGGGCGGGTC 60.892 55.000 0.00 0.00 0.00 4.46 F
2342 2736 1.203149 ACTACGACCTTCCTCTGGGTT 60.203 52.381 0.00 0.00 35.77 4.11 F
2956 3350 0.677842 CTGGAAGCTGCTTTGCCTTT 59.322 50.000 17.10 0.00 0.00 3.11 F
3020 3414 2.369860 TGTCCAGACTCAGTTGCATCTT 59.630 45.455 0.00 0.00 0.00 2.40 F
4368 4771 1.620819 AGGTGCTCAGAACTTCGTGAT 59.379 47.619 0.00 0.00 0.00 3.06 F
5388 5791 0.822811 TCTCAGCTGCCATCTCTGAC 59.177 55.000 9.47 0.00 33.72 3.51 F
7065 7526 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1387 1780 0.109723 AGCAAGCCCGAGTGGTAAAA 59.890 50.000 0.00 0.0 36.04 1.52 R
2933 3327 0.523519 GCAAAGCAGCTTCCAGTACC 59.476 55.000 8.48 0.0 0.00 3.34 R
3593 3993 1.336877 TCGAGCGTCTTGTTGAATCG 58.663 50.000 0.00 0.0 0.00 3.34 R
4028 4431 3.436028 TACGGAGGGGAGAGGGGG 61.436 72.222 0.00 0.0 0.00 5.40 R
4998 5401 4.662468 TTCTTCATCATCTTCTCCCTCG 57.338 45.455 0.00 0.0 0.00 4.63 R
5995 6410 0.117541 TCACTGGCCCCTAAGGTGTA 59.882 55.000 0.00 0.0 38.26 2.90 R
7256 7828 0.029300 CTTTGTGCACCCGTGTTCAG 59.971 55.000 15.69 0.0 0.00 3.02 R
8541 9244 0.179032 TCAAGCTTTGGGTTCTCGCA 60.179 50.000 0.00 0.0 34.75 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 2.513897 GGGACGGCCATCGAAAGG 60.514 66.667 11.00 3.05 42.43 3.11
41 42 2.513897 GGACGGCCATCGAAAGGG 60.514 66.667 0.00 3.38 42.43 3.95
42 43 2.513897 GACGGCCATCGAAAGGGG 60.514 66.667 2.24 0.98 42.43 4.79
43 44 4.796495 ACGGCCATCGAAAGGGGC 62.796 66.667 15.05 15.05 46.61 5.80
46 47 2.830370 GCCATCGAAAGGGGCAGG 60.830 66.667 13.74 0.00 46.59 4.85
47 48 2.830370 CCATCGAAAGGGGCAGGC 60.830 66.667 0.00 0.00 0.00 4.85
48 49 3.204827 CATCGAAAGGGGCAGGCG 61.205 66.667 0.00 0.00 0.00 5.52
49 50 3.399181 ATCGAAAGGGGCAGGCGA 61.399 61.111 0.00 0.00 35.32 5.54
50 51 3.391665 ATCGAAAGGGGCAGGCGAG 62.392 63.158 0.00 0.00 34.25 5.03
55 56 4.888325 AGGGGCAGGCGAGGCTAT 62.888 66.667 0.00 0.00 0.00 2.97
56 57 4.632974 GGGGCAGGCGAGGCTATG 62.633 72.222 0.00 0.00 0.00 2.23
57 58 4.632974 GGGCAGGCGAGGCTATGG 62.633 72.222 0.00 0.00 0.00 2.74
60 61 3.916544 CAGGCGAGGCTATGGCGA 61.917 66.667 0.00 0.00 39.81 5.54
61 62 3.610669 AGGCGAGGCTATGGCGAG 61.611 66.667 0.00 0.00 39.81 5.03
62 63 4.671569 GGCGAGGCTATGGCGAGG 62.672 72.222 0.00 0.00 39.81 4.63
63 64 3.606662 GCGAGGCTATGGCGAGGA 61.607 66.667 0.00 0.00 39.81 3.71
64 65 2.647875 CGAGGCTATGGCGAGGAG 59.352 66.667 0.00 0.00 39.81 3.69
65 66 2.925262 CGAGGCTATGGCGAGGAGG 61.925 68.421 0.00 0.00 39.81 4.30
66 67 2.525381 AGGCTATGGCGAGGAGGG 60.525 66.667 0.00 0.00 39.81 4.30
67 68 3.631046 GGCTATGGCGAGGAGGGG 61.631 72.222 0.00 0.00 39.81 4.79
68 69 3.631046 GCTATGGCGAGGAGGGGG 61.631 72.222 0.00 0.00 0.00 5.40
82 83 3.162154 GGGGGAGACGGGCTAAGG 61.162 72.222 0.00 0.00 0.00 2.69
83 84 3.162154 GGGGAGACGGGCTAAGGG 61.162 72.222 0.00 0.00 0.00 3.95
84 85 2.365237 GGGAGACGGGCTAAGGGT 60.365 66.667 0.00 0.00 0.00 4.34
85 86 2.732619 GGGAGACGGGCTAAGGGTG 61.733 68.421 0.00 0.00 0.00 4.61
86 87 2.732619 GGAGACGGGCTAAGGGTGG 61.733 68.421 0.00 0.00 0.00 4.61
87 88 1.988406 GAGACGGGCTAAGGGTGGT 60.988 63.158 0.00 0.00 0.00 4.16
88 89 1.957765 GAGACGGGCTAAGGGTGGTC 61.958 65.000 0.00 0.00 0.00 4.02
89 90 3.366739 GACGGGCTAAGGGTGGTCG 62.367 68.421 0.00 0.00 0.00 4.79
90 91 4.832608 CGGGCTAAGGGTGGTCGC 62.833 72.222 0.00 0.00 0.00 5.19
91 92 4.484872 GGGCTAAGGGTGGTCGCC 62.485 72.222 0.00 0.00 39.98 5.54
92 93 4.832608 GGCTAAGGGTGGTCGCCG 62.833 72.222 0.00 0.00 0.00 6.46
93 94 4.832608 GCTAAGGGTGGTCGCCGG 62.833 72.222 0.00 0.00 0.00 6.13
94 95 4.157120 CTAAGGGTGGTCGCCGGG 62.157 72.222 2.18 0.00 0.00 5.73
95 96 4.700448 TAAGGGTGGTCGCCGGGA 62.700 66.667 2.18 0.00 0.00 5.14
103 104 4.436998 GTCGCCGGGACCAGAGTG 62.437 72.222 2.18 0.00 39.90 3.51
109 110 4.083862 GGGACCAGAGTGGCCGAC 62.084 72.222 0.00 0.00 42.67 4.79
110 111 4.436998 GGACCAGAGTGGCCGACG 62.437 72.222 0.00 0.00 42.67 5.12
111 112 4.436998 GACCAGAGTGGCCGACGG 62.437 72.222 10.29 10.29 42.67 4.79
128 129 2.511145 GCGAGAGGCAAGCTGAGG 60.511 66.667 0.00 0.00 42.87 3.86
129 130 2.186384 CGAGAGGCAAGCTGAGGG 59.814 66.667 0.00 0.00 0.00 4.30
130 131 2.654079 CGAGAGGCAAGCTGAGGGT 61.654 63.158 0.00 0.00 0.00 4.34
131 132 1.078567 GAGAGGCAAGCTGAGGGTG 60.079 63.158 0.00 0.00 0.00 4.61
132 133 2.045536 GAGGCAAGCTGAGGGTGG 60.046 66.667 0.00 0.00 0.00 4.61
133 134 2.856000 AGGCAAGCTGAGGGTGGT 60.856 61.111 0.00 0.00 0.00 4.16
134 135 2.360475 GGCAAGCTGAGGGTGGTC 60.360 66.667 0.00 0.00 0.00 4.02
135 136 2.743928 GCAAGCTGAGGGTGGTCG 60.744 66.667 0.00 0.00 0.00 4.79
136 137 2.743928 CAAGCTGAGGGTGGTCGC 60.744 66.667 0.00 0.00 0.00 5.19
137 138 4.021925 AAGCTGAGGGTGGTCGCC 62.022 66.667 0.00 0.00 0.00 5.54
140 141 4.135153 CTGAGGGTGGTCGCCGAG 62.135 72.222 0.00 0.00 0.00 4.63
158 159 4.773117 GCCGGAGTGGTCGACGAC 62.773 72.222 21.56 21.56 41.21 4.34
159 160 4.456253 CCGGAGTGGTCGACGACG 62.456 72.222 22.55 12.61 41.26 5.12
160 161 3.417224 CGGAGTGGTCGACGACGA 61.417 66.667 22.55 15.24 46.56 4.20
168 169 2.515523 TCGACGACGAGGGGGATC 60.516 66.667 5.75 0.00 43.81 3.36
169 170 2.516460 CGACGACGAGGGGGATCT 60.516 66.667 0.00 0.00 42.66 2.75
170 171 1.227764 CGACGACGAGGGGGATCTA 60.228 63.158 0.00 0.00 42.66 1.98
171 172 1.229315 CGACGACGAGGGGGATCTAG 61.229 65.000 0.00 0.00 42.66 2.43
172 173 0.890090 GACGACGAGGGGGATCTAGG 60.890 65.000 0.00 0.00 0.00 3.02
173 174 2.269529 CGACGAGGGGGATCTAGGC 61.270 68.421 0.00 0.00 0.00 3.93
174 175 2.203509 ACGAGGGGGATCTAGGCG 60.204 66.667 0.00 0.00 0.00 5.52
175 176 3.686045 CGAGGGGGATCTAGGCGC 61.686 72.222 0.00 0.00 0.00 6.53
176 177 3.686045 GAGGGGGATCTAGGCGCG 61.686 72.222 0.00 0.00 0.00 6.86
177 178 4.220163 AGGGGGATCTAGGCGCGA 62.220 66.667 12.10 0.00 0.00 5.87
178 179 3.686045 GGGGGATCTAGGCGCGAG 61.686 72.222 12.10 0.00 0.00 5.03
179 180 2.597805 GGGGATCTAGGCGCGAGA 60.598 66.667 12.10 12.45 0.00 4.04
180 181 2.631580 GGGGATCTAGGCGCGAGAG 61.632 68.421 12.10 2.60 0.00 3.20
201 202 6.443934 GAGCTAACTCTATTGTGTGAGAGA 57.556 41.667 5.93 0.00 41.55 3.10
202 203 6.842437 AGCTAACTCTATTGTGTGAGAGAA 57.158 37.500 5.93 0.00 41.55 2.87
203 204 6.626302 AGCTAACTCTATTGTGTGAGAGAAC 58.374 40.000 5.93 0.00 41.55 3.01
204 205 6.435904 AGCTAACTCTATTGTGTGAGAGAACT 59.564 38.462 5.93 0.00 41.55 3.01
205 206 6.750039 GCTAACTCTATTGTGTGAGAGAACTC 59.250 42.308 5.93 0.00 41.55 3.01
206 207 5.652994 ACTCTATTGTGTGAGAGAACTCC 57.347 43.478 5.93 0.00 41.55 3.85
207 208 4.156922 ACTCTATTGTGTGAGAGAACTCCG 59.843 45.833 5.93 0.00 41.55 4.63
208 209 4.079970 TCTATTGTGTGAGAGAACTCCGT 58.920 43.478 0.00 0.00 41.99 4.69
209 210 2.795175 TTGTGTGAGAGAACTCCGTC 57.205 50.000 0.00 0.00 41.99 4.79
210 211 1.687563 TGTGTGAGAGAACTCCGTCA 58.312 50.000 0.00 0.00 41.99 4.35
211 212 2.239400 TGTGTGAGAGAACTCCGTCAT 58.761 47.619 0.00 0.00 41.99 3.06
212 213 2.029918 TGTGTGAGAGAACTCCGTCATG 60.030 50.000 0.00 0.00 41.99 3.07
213 214 2.029828 GTGTGAGAGAACTCCGTCATGT 60.030 50.000 0.00 0.00 41.99 3.21
224 225 5.821516 ACTCCGTCATGTAGAGAGTTTAG 57.178 43.478 13.74 0.00 34.17 1.85
240 241 9.362151 AGAGAGTTTAGAAAAGAGAAAGAGAGA 57.638 33.333 0.00 0.00 0.00 3.10
241 242 9.974980 GAGAGTTTAGAAAAGAGAAAGAGAGAA 57.025 33.333 0.00 0.00 0.00 2.87
395 400 4.679331 AGGACTAGGTTCTAGAAAGTGCT 58.321 43.478 18.79 18.79 34.50 4.40
511 521 9.737427 AAAGAAGTCATCTACAATATACGTGAG 57.263 33.333 0.00 0.00 37.42 3.51
529 540 4.326548 CGTGAGACGTTCTTTATCCCTTTC 59.673 45.833 0.00 0.00 36.74 2.62
561 572 6.823689 CACCTTTAGTGCTATTGGACTGTAAT 59.176 38.462 11.35 0.00 44.61 1.89
572 583 8.314751 GCTATTGGACTGTAATAGTGGACATAT 58.685 37.037 10.46 0.00 40.53 1.78
579 590 9.416794 GACTGTAATAGTGGACATATCATTCAG 57.583 37.037 0.00 0.00 40.53 3.02
595 607 1.620822 TCAGGCCAAGGCTCTTTTTC 58.379 50.000 5.01 0.00 41.60 2.29
598 610 2.751806 CAGGCCAAGGCTCTTTTTCTAG 59.248 50.000 5.01 0.00 41.60 2.43
611 623 9.061435 GGCTCTTTTTCTAGCATAATACAAGAT 57.939 33.333 0.00 0.00 40.61 2.40
641 653 7.230849 TGCTCTTTTCATGATTAATGGTTGT 57.769 32.000 0.00 0.00 36.86 3.32
729 755 8.122330 GCGTGTTTCATGATGAATTCACTATAA 58.878 33.333 25.76 0.00 38.34 0.98
839 865 8.788325 AAAGTTGTACTAAAGTTGAGACACTT 57.212 30.769 0.00 0.00 38.74 3.16
840 866 9.880157 AAAGTTGTACTAAAGTTGAGACACTTA 57.120 29.630 0.00 0.00 35.87 2.24
850 876 7.653767 AAGTTGAGACACTTATTTTAGGACG 57.346 36.000 0.00 0.00 35.10 4.79
851 877 6.164176 AGTTGAGACACTTATTTTAGGACGG 58.836 40.000 0.00 0.00 0.00 4.79
852 878 5.988310 TGAGACACTTATTTTAGGACGGA 57.012 39.130 0.00 0.00 0.00 4.69
853 879 5.962433 TGAGACACTTATTTTAGGACGGAG 58.038 41.667 0.00 0.00 0.00 4.63
854 880 5.105473 TGAGACACTTATTTTAGGACGGAGG 60.105 44.000 0.00 0.00 0.00 4.30
855 881 4.161754 AGACACTTATTTTAGGACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
856 882 4.098894 ACACTTATTTTAGGACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
857 883 4.161754 ACACTTATTTTAGGACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
858 884 4.161754 CACTTATTTTAGGACGGAGGGAGT 59.838 45.833 0.00 0.00 0.00 3.85
859 885 5.361857 CACTTATTTTAGGACGGAGGGAGTA 59.638 44.000 0.00 0.00 0.00 2.59
860 886 6.041751 CACTTATTTTAGGACGGAGGGAGTAT 59.958 42.308 0.00 0.00 0.00 2.12
861 887 7.232127 CACTTATTTTAGGACGGAGGGAGTATA 59.768 40.741 0.00 0.00 0.00 1.47
892 918 1.298264 CGTTTGCAAAGCACGAGCA 60.298 52.632 13.26 0.00 45.49 4.26
896 922 3.485051 CGTTTGCAAAGCACGAGCATATA 60.485 43.478 13.26 0.00 45.49 0.86
897 923 4.411327 GTTTGCAAAGCACGAGCATATAA 58.589 39.130 13.26 0.00 45.49 0.98
898 924 4.693538 TTGCAAAGCACGAGCATATAAA 57.306 36.364 7.77 0.00 45.49 1.40
1143 1181 4.514441 ACGACGACGATAAGGTATCAATCT 59.486 41.667 15.32 0.00 42.66 2.40
1196 1589 2.681706 CGCAGATTATTCCTCATCGCT 58.318 47.619 0.00 0.00 0.00 4.93
1251 1644 1.697982 AGGTTTTGACTAGAACCCGCT 59.302 47.619 7.31 0.00 45.08 5.52
1288 1681 1.920351 GTTGGGGTTAAGGGAGATCCA 59.080 52.381 0.47 0.00 38.24 3.41
1365 1758 0.891904 TTGTTTTAGCTGGGCGGGTC 60.892 55.000 0.00 0.00 0.00 4.46
1379 1772 2.599757 GGGTCGTTAGGGCTGGGTT 61.600 63.158 0.00 0.00 0.00 4.11
1387 1780 2.307980 GTTAGGGCTGGGTTAGGTTTCT 59.692 50.000 0.00 0.00 0.00 2.52
1438 1832 4.481930 TTTTTGTGCTGTATTGTCCTCG 57.518 40.909 0.00 0.00 0.00 4.63
1466 1860 3.417101 TGATTCCGTTGGTAATTGCAGT 58.583 40.909 0.00 0.00 0.00 4.40
1615 2009 1.427809 TGCATACCTGGCATCTAGCT 58.572 50.000 0.00 0.00 44.79 3.32
1616 2010 2.608623 TGCATACCTGGCATCTAGCTA 58.391 47.619 0.00 0.00 44.79 3.32
1761 2155 9.612620 GTTTATTATGTCTGAGTTTTCAACCAG 57.387 33.333 0.00 0.00 31.69 4.00
2269 2663 1.448717 GTCGGCCTTCAGGAGCTTC 60.449 63.158 0.00 0.00 37.39 3.86
2342 2736 1.203149 ACTACGACCTTCCTCTGGGTT 60.203 52.381 0.00 0.00 35.77 4.11
2628 3022 9.462174 TCAAATGTTCATGTATTCTTTGTTCAC 57.538 29.630 0.00 0.00 0.00 3.18
2798 3192 5.183140 GCTTTTGAGAAGGTAATGGTGCTAA 59.817 40.000 0.00 0.00 0.00 3.09
2821 3215 7.739498 AAGTTCTTCGCTAACTTAATTTCCA 57.261 32.000 7.54 0.00 43.54 3.53
2856 3250 6.160576 ACTGCTGTTTCCACATTATTTGTT 57.839 33.333 0.00 0.00 36.00 2.83
2858 3252 4.749099 TGCTGTTTCCACATTATTTGTTGC 59.251 37.500 0.00 0.00 36.00 4.17
2873 3267 3.788227 TGTTGCCCAGTGTAGAATCTT 57.212 42.857 0.00 0.00 0.00 2.40
2956 3350 0.677842 CTGGAAGCTGCTTTGCCTTT 59.322 50.000 17.10 0.00 0.00 3.11
3020 3414 2.369860 TGTCCAGACTCAGTTGCATCTT 59.630 45.455 0.00 0.00 0.00 2.40
3096 3490 3.069443 TGCTTTGCTAGGGGAAAACAAAG 59.931 43.478 8.93 8.93 46.25 2.77
3354 3754 3.290710 ACATATGAATGTCCCAAGCCAC 58.709 45.455 10.38 0.00 42.92 5.01
3451 3851 4.976116 AGTTCTTTATGTTTGCAGTTTCGC 59.024 37.500 0.00 0.00 0.00 4.70
3505 3905 7.883217 TCTTCCGTTCACTCATAATAGGTATC 58.117 38.462 0.00 0.00 0.00 2.24
3507 3907 5.479375 TCCGTTCACTCATAATAGGTATCCC 59.521 44.000 0.00 0.00 0.00 3.85
3705 4105 7.639113 ATTAACAGAACTTGGAAGTGTTTCA 57.361 32.000 0.00 0.00 39.66 2.69
3710 4110 4.646492 AGAACTTGGAAGTGTTTCAGCAAT 59.354 37.500 0.00 0.00 39.66 3.56
3715 4115 7.327214 ACTTGGAAGTGTTTCAGCAATTTTTA 58.673 30.769 0.00 0.00 37.98 1.52
4026 4429 3.132467 GTCGCTTATCTCTTAACACCCCT 59.868 47.826 0.00 0.00 0.00 4.79
4027 4430 3.383825 TCGCTTATCTCTTAACACCCCTC 59.616 47.826 0.00 0.00 0.00 4.30
4028 4431 3.492829 CGCTTATCTCTTAACACCCCTCC 60.493 52.174 0.00 0.00 0.00 4.30
4060 4463 3.118738 CCTCCGTACTGTCCAGCTAATTT 60.119 47.826 0.00 0.00 0.00 1.82
4071 4474 9.959721 ACTGTCCAGCTAATTTTCTTTTATCTA 57.040 29.630 0.00 0.00 0.00 1.98
4359 4762 6.240894 ACATATTCTCAAAAGGTGCTCAGAA 58.759 36.000 0.00 0.00 0.00 3.02
4368 4771 1.620819 AGGTGCTCAGAACTTCGTGAT 59.379 47.619 0.00 0.00 0.00 3.06
4785 5188 4.767409 GGGAAGGCTCTACTCAATTTTGTT 59.233 41.667 0.00 0.00 0.00 2.83
4930 5333 2.095364 GCTGTTGAGCTGGAACATGAAG 60.095 50.000 0.00 0.00 42.52 3.02
4985 5388 2.437359 AGCAATGCAGTCGGGAGC 60.437 61.111 8.35 0.00 0.00 4.70
5193 5596 6.002082 AGGTCCTGGAAACTGTAATGTTAAC 58.998 40.000 0.00 0.00 0.00 2.01
5240 5643 2.182537 GGCTTTCAATGGCAGGCG 59.817 61.111 0.00 0.00 0.00 5.52
5388 5791 0.822811 TCTCAGCTGCCATCTCTGAC 59.177 55.000 9.47 0.00 33.72 3.51
5535 5947 1.303643 GCAGAGGTTTCAGGGTGGG 60.304 63.158 0.00 0.00 0.00 4.61
5536 5948 1.303643 CAGAGGTTTCAGGGTGGGC 60.304 63.158 0.00 0.00 0.00 5.36
5537 5949 2.035783 GAGGTTTCAGGGTGGGCC 59.964 66.667 0.00 0.00 0.00 5.80
5538 5950 3.920093 GAGGTTTCAGGGTGGGCCG 62.920 68.421 0.00 0.00 34.97 6.13
5539 5951 3.961414 GGTTTCAGGGTGGGCCGA 61.961 66.667 0.00 0.00 34.97 5.54
5540 5952 2.359975 GTTTCAGGGTGGGCCGAG 60.360 66.667 0.00 0.00 34.97 4.63
5541 5953 2.852075 TTTCAGGGTGGGCCGAGT 60.852 61.111 0.00 0.00 34.97 4.18
5542 5954 3.190738 TTTCAGGGTGGGCCGAGTG 62.191 63.158 0.00 0.00 34.97 3.51
5588 6000 4.877823 TCCACATGTATCTGTTGAATCTGC 59.122 41.667 0.00 0.00 0.00 4.26
5590 6002 3.873361 ACATGTATCTGTTGAATCTGCGG 59.127 43.478 0.00 0.00 0.00 5.69
5712 6124 4.574013 GGGATGACAATCAATCTCACTGAC 59.426 45.833 0.00 0.00 34.17 3.51
5745 6157 5.879223 AGCTGTATCAAAGAAGAATCCTGTG 59.121 40.000 0.00 0.00 0.00 3.66
5995 6410 1.151450 CAGCAGGTTTCTGGGGTGT 59.849 57.895 0.00 0.00 41.19 4.16
6214 6629 9.901172 GGTAAAAATCTTCCTTCCTGTAGATTA 57.099 33.333 0.00 0.00 36.58 1.75
6521 6938 7.346175 TGGTAAGTTCTATGCTAACTCCCATTA 59.654 37.037 0.00 0.00 36.17 1.90
6734 7194 8.593492 TTATAGACACAATCGATTCATTCCTG 57.407 34.615 7.92 0.00 0.00 3.86
6780 7240 4.426416 CCATCATTTGTGCAACTGGTATG 58.574 43.478 0.00 0.00 38.04 2.39
6843 7303 6.048509 GGTTTGAAACTGTTTGGTGATCATT 58.951 36.000 11.03 0.00 0.00 2.57
6844 7304 6.538381 GGTTTGAAACTGTTTGGTGATCATTT 59.462 34.615 11.03 0.00 0.00 2.32
6845 7305 7.254421 GGTTTGAAACTGTTTGGTGATCATTTC 60.254 37.037 11.03 3.00 0.00 2.17
6846 7306 6.713762 TGAAACTGTTTGGTGATCATTTCT 57.286 33.333 11.03 0.00 0.00 2.52
6847 7307 7.815840 TGAAACTGTTTGGTGATCATTTCTA 57.184 32.000 11.03 0.00 0.00 2.10
6848 7308 8.408043 TGAAACTGTTTGGTGATCATTTCTAT 57.592 30.769 11.03 0.00 0.00 1.98
6849 7309 8.859090 TGAAACTGTTTGGTGATCATTTCTATT 58.141 29.630 11.03 0.00 0.00 1.73
6900 7361 9.850628 TTGACTGTACTAGATGTTATGTTGTAC 57.149 33.333 0.00 0.00 36.07 2.90
6952 7413 7.104290 GCAAGTTACTCCCTCTGTAAACTAAT 58.896 38.462 0.00 0.00 32.58 1.73
6953 7414 8.255905 GCAAGTTACTCCCTCTGTAAACTAATA 58.744 37.037 0.00 0.00 32.58 0.98
6954 7415 9.583765 CAAGTTACTCCCTCTGTAAACTAATAC 57.416 37.037 0.00 0.00 32.58 1.89
6955 7416 9.544579 AAGTTACTCCCTCTGTAAACTAATACT 57.455 33.333 0.00 0.00 32.58 2.12
6956 7417 9.187996 AGTTACTCCCTCTGTAAACTAATACTC 57.812 37.037 0.00 0.00 32.58 2.59
6957 7418 9.187996 GTTACTCCCTCTGTAAACTAATACTCT 57.812 37.037 0.00 0.00 32.58 3.24
6958 7419 7.885009 ACTCCCTCTGTAAACTAATACTCTC 57.115 40.000 0.00 0.00 0.00 3.20
6959 7420 7.645002 ACTCCCTCTGTAAACTAATACTCTCT 58.355 38.462 0.00 0.00 0.00 3.10
6960 7421 7.776500 ACTCCCTCTGTAAACTAATACTCTCTC 59.224 40.741 0.00 0.00 0.00 3.20
6961 7422 7.061688 TCCCTCTGTAAACTAATACTCTCTCC 58.938 42.308 0.00 0.00 0.00 3.71
6962 7423 6.016943 CCCTCTGTAAACTAATACTCTCTCCG 60.017 46.154 0.00 0.00 0.00 4.63
6963 7424 6.543100 CCTCTGTAAACTAATACTCTCTCCGT 59.457 42.308 0.00 0.00 0.00 4.69
6964 7425 7.254863 CCTCTGTAAACTAATACTCTCTCCGTC 60.255 44.444 0.00 0.00 0.00 4.79
6965 7426 6.541641 TCTGTAAACTAATACTCTCTCCGTCC 59.458 42.308 0.00 0.00 0.00 4.79
6966 7427 4.897025 AAACTAATACTCTCTCCGTCCG 57.103 45.455 0.00 0.00 0.00 4.79
6967 7428 3.834489 ACTAATACTCTCTCCGTCCGA 57.166 47.619 0.00 0.00 0.00 4.55
6968 7429 4.148128 ACTAATACTCTCTCCGTCCGAA 57.852 45.455 0.00 0.00 0.00 4.30
6969 7430 4.521146 ACTAATACTCTCTCCGTCCGAAA 58.479 43.478 0.00 0.00 0.00 3.46
6970 7431 4.946157 ACTAATACTCTCTCCGTCCGAAAA 59.054 41.667 0.00 0.00 0.00 2.29
6971 7432 5.593502 ACTAATACTCTCTCCGTCCGAAAAT 59.406 40.000 0.00 0.00 0.00 1.82
6972 7433 6.769822 ACTAATACTCTCTCCGTCCGAAAATA 59.230 38.462 0.00 0.00 0.00 1.40
6973 7434 3.779271 ACTCTCTCCGTCCGAAAATAC 57.221 47.619 0.00 0.00 0.00 1.89
6974 7435 3.354467 ACTCTCTCCGTCCGAAAATACT 58.646 45.455 0.00 0.00 0.00 2.12
6975 7436 3.762823 ACTCTCTCCGTCCGAAAATACTT 59.237 43.478 0.00 0.00 0.00 2.24
6976 7437 4.106029 TCTCTCCGTCCGAAAATACTTG 57.894 45.455 0.00 0.00 0.00 3.16
6977 7438 3.508793 TCTCTCCGTCCGAAAATACTTGT 59.491 43.478 0.00 0.00 0.00 3.16
6978 7439 4.021719 TCTCTCCGTCCGAAAATACTTGTT 60.022 41.667 0.00 0.00 0.00 2.83
6979 7440 3.991773 TCTCCGTCCGAAAATACTTGTTG 59.008 43.478 0.00 0.00 0.00 3.33
6980 7441 2.481185 TCCGTCCGAAAATACTTGTTGC 59.519 45.455 0.00 0.00 0.00 4.17
6981 7442 2.492001 CGTCCGAAAATACTTGTTGCG 58.508 47.619 0.00 0.00 0.00 4.85
6982 7443 2.156117 CGTCCGAAAATACTTGTTGCGA 59.844 45.455 0.00 0.00 0.00 5.10
6983 7444 3.363182 CGTCCGAAAATACTTGTTGCGAA 60.363 43.478 0.00 0.00 0.00 4.70
6984 7445 4.529446 GTCCGAAAATACTTGTTGCGAAA 58.471 39.130 0.00 0.00 0.00 3.46
6985 7446 4.971220 GTCCGAAAATACTTGTTGCGAAAA 59.029 37.500 0.00 0.00 0.00 2.29
6986 7447 5.627780 GTCCGAAAATACTTGTTGCGAAAAT 59.372 36.000 0.00 0.00 0.00 1.82
6987 7448 5.627367 TCCGAAAATACTTGTTGCGAAAATG 59.373 36.000 0.00 0.00 0.00 2.32
6988 7449 5.164100 CCGAAAATACTTGTTGCGAAAATGG 60.164 40.000 0.00 0.00 0.00 3.16
6989 7450 5.627367 CGAAAATACTTGTTGCGAAAATGGA 59.373 36.000 0.00 0.00 0.00 3.41
6990 7451 6.307800 CGAAAATACTTGTTGCGAAAATGGAT 59.692 34.615 0.00 0.00 0.00 3.41
6991 7452 7.483375 CGAAAATACTTGTTGCGAAAATGGATA 59.517 33.333 0.00 0.00 0.00 2.59
6992 7453 8.460831 AAAATACTTGTTGCGAAAATGGATAC 57.539 30.769 0.00 0.00 0.00 2.24
7042 7503 7.969690 ACATCTAGATACATCCATTCCTAGG 57.030 40.000 4.54 0.82 0.00 3.02
7043 7504 7.713518 ACATCTAGATACATCCATTCCTAGGA 58.286 38.462 7.62 7.62 39.97 2.94
7044 7505 7.617723 ACATCTAGATACATCCATTCCTAGGAC 59.382 40.741 12.22 0.00 38.13 3.85
7045 7506 7.103745 TCTAGATACATCCATTCCTAGGACA 57.896 40.000 12.22 3.40 38.13 4.02
7046 7507 7.535738 TCTAGATACATCCATTCCTAGGACAA 58.464 38.462 12.22 0.00 38.13 3.18
7047 7508 6.678568 AGATACATCCATTCCTAGGACAAG 57.321 41.667 12.22 4.06 38.13 3.16
7048 7509 6.146760 AGATACATCCATTCCTAGGACAAGT 58.853 40.000 12.22 7.28 38.13 3.16
7049 7510 7.306013 AGATACATCCATTCCTAGGACAAGTA 58.694 38.462 12.22 9.23 38.13 2.24
7050 7511 7.958583 AGATACATCCATTCCTAGGACAAGTAT 59.041 37.037 12.22 13.30 38.13 2.12
7051 7512 6.831664 ACATCCATTCCTAGGACAAGTATT 57.168 37.500 12.22 0.00 38.13 1.89
7052 7513 7.213178 ACATCCATTCCTAGGACAAGTATTT 57.787 36.000 12.22 0.00 38.13 1.40
7053 7514 7.283329 ACATCCATTCCTAGGACAAGTATTTC 58.717 38.462 12.22 0.00 38.13 2.17
7054 7515 6.248569 TCCATTCCTAGGACAAGTATTTCC 57.751 41.667 12.22 0.00 0.00 3.13
7055 7516 5.057149 CCATTCCTAGGACAAGTATTTCCG 58.943 45.833 12.22 0.00 36.95 4.30
7056 7517 4.748277 TTCCTAGGACAAGTATTTCCGG 57.252 45.455 12.22 0.00 36.95 5.14
7057 7518 3.985127 TCCTAGGACAAGTATTTCCGGA 58.015 45.455 7.62 0.00 36.95 5.14
7058 7519 3.703052 TCCTAGGACAAGTATTTCCGGAC 59.297 47.826 7.62 0.00 36.95 4.79
7059 7520 2.667473 AGGACAAGTATTTCCGGACG 57.333 50.000 1.83 0.00 36.95 4.79
7060 7521 1.206371 AGGACAAGTATTTCCGGACGG 59.794 52.381 1.83 3.96 36.95 4.79
7061 7522 1.205417 GGACAAGTATTTCCGGACGGA 59.795 52.381 1.83 9.76 43.52 4.69
7062 7523 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
7063 7524 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
7064 7525 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
7065 7526 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
7066 7527 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
7120 7581 1.002134 CTCGGGTGCACAAATCCCT 60.002 57.895 20.43 0.00 39.10 4.20
7169 7655 4.950434 AAATTGGTTGTATTACGGTCCG 57.050 40.909 10.48 10.48 0.00 4.79
7171 7657 2.652941 TGGTTGTATTACGGTCCGAC 57.347 50.000 20.51 6.04 0.00 4.79
7173 7659 2.496871 TGGTTGTATTACGGTCCGACAT 59.503 45.455 20.51 11.50 0.00 3.06
7174 7660 3.698539 TGGTTGTATTACGGTCCGACATA 59.301 43.478 20.51 10.46 0.00 2.29
7176 7662 4.439974 GGTTGTATTACGGTCCGACATACA 60.440 45.833 24.37 24.37 35.41 2.29
7177 7663 4.979943 TGTATTACGGTCCGACATACAA 57.020 40.909 25.25 15.38 34.84 2.41
7178 7664 5.518848 TGTATTACGGTCCGACATACAAT 57.481 39.130 25.25 14.60 34.84 2.71
7179 7665 6.631971 TGTATTACGGTCCGACATACAATA 57.368 37.500 25.25 13.91 34.84 1.90
7180 7666 6.437928 TGTATTACGGTCCGACATACAATAC 58.562 40.000 25.25 20.78 34.84 1.89
7181 7667 4.979943 TTACGGTCCGACATACAATACA 57.020 40.909 20.51 0.00 0.00 2.29
7182 7668 3.872511 ACGGTCCGACATACAATACAA 57.127 42.857 20.51 0.00 0.00 2.41
7185 7671 3.676598 CGGTCCGACATACAATACAACCA 60.677 47.826 4.91 0.00 0.00 3.67
7186 7672 4.255301 GGTCCGACATACAATACAACCAA 58.745 43.478 0.00 0.00 0.00 3.67
7188 7674 5.355910 GGTCCGACATACAATACAACCAATT 59.644 40.000 0.00 0.00 0.00 2.32
7190 7676 7.309920 GTCCGACATACAATACAACCAATTTT 58.690 34.615 0.00 0.00 0.00 1.82
7191 7677 7.810759 GTCCGACATACAATACAACCAATTTTT 59.189 33.333 0.00 0.00 0.00 1.94
7235 7807 8.789881 TTTTGATTTTTACTGACATTACCACG 57.210 30.769 0.00 0.00 0.00 4.94
7239 7811 0.173935 TACTGACATTACCACGGGCG 59.826 55.000 0.00 0.00 0.00 6.13
7244 7816 4.036430 ATTACCACGGGCGCCCAA 62.036 61.111 42.78 29.76 35.37 4.12
7246 7818 3.980442 TTACCACGGGCGCCCAATC 62.980 63.158 42.78 18.48 35.37 2.67
7256 7828 2.696759 CGCCCAATCCCCACGAAAC 61.697 63.158 0.00 0.00 0.00 2.78
7261 7833 1.539827 CCAATCCCCACGAAACTGAAC 59.460 52.381 0.00 0.00 0.00 3.18
7264 7836 0.531090 TCCCCACGAAACTGAACACG 60.531 55.000 0.00 0.00 0.00 4.49
7265 7837 1.503818 CCCCACGAAACTGAACACGG 61.504 60.000 0.00 0.00 0.00 4.94
7269 7841 1.278637 CGAAACTGAACACGGGTGC 59.721 57.895 0.00 0.00 0.00 5.01
7274 7846 0.678366 ACTGAACACGGGTGCACAAA 60.678 50.000 20.43 0.00 0.00 2.83
7373 7960 1.006998 AGGGGTGCTCCAATGCATTTA 59.993 47.619 9.83 0.00 45.23 1.40
7384 7971 6.312672 GCTCCAATGCATTTACCGTTTTAAAT 59.687 34.615 9.83 0.00 32.84 1.40
7436 8023 1.985473 TTTCTGGCACTGCATTCACT 58.015 45.000 2.82 0.00 0.00 3.41
7552 8142 3.426615 AGACTGAATCGTCTCTCTTGGT 58.573 45.455 2.77 0.00 40.04 3.67
7553 8143 3.192422 AGACTGAATCGTCTCTCTTGGTG 59.808 47.826 2.77 0.00 40.04 4.17
7592 8182 5.626142 TGAACTTGTTTGCCCAATCTACTA 58.374 37.500 0.00 0.00 0.00 1.82
7690 8288 0.698818 GTTGGAGGTTGGAGGGTGAT 59.301 55.000 0.00 0.00 0.00 3.06
7691 8289 1.075536 GTTGGAGGTTGGAGGGTGATT 59.924 52.381 0.00 0.00 0.00 2.57
7700 8298 3.370840 TGGAGGGTGATTTTGATCTGG 57.629 47.619 0.00 0.00 0.00 3.86
7715 8313 0.413434 TCTGGGGACTGTCTGATGGA 59.587 55.000 7.85 0.00 0.00 3.41
7835 8435 6.407525 GCTCTCATTGGATAAACTGTCTACCT 60.408 42.308 0.00 0.00 0.00 3.08
8029 8629 2.350192 CGGCAACAGCACGTTATAATCA 59.650 45.455 0.00 0.00 35.52 2.57
8032 8632 4.527564 GCAACAGCACGTTATAATCATCC 58.472 43.478 0.00 0.00 35.52 3.51
8038 8638 4.752101 AGCACGTTATAATCATCCTTCTGC 59.248 41.667 0.00 0.00 0.00 4.26
8205 8902 4.917385 TGGTTTCCTAATGAGCTTGCTTA 58.083 39.130 0.00 0.00 0.00 3.09
8221 8918 2.159531 TGCTTATGTGCTGCATCGTTTC 60.160 45.455 5.27 0.00 38.94 2.78
8229 8927 4.455533 TGTGCTGCATCGTTTCTTTATCTT 59.544 37.500 5.27 0.00 0.00 2.40
8248 8947 4.803452 TCTTGGGTCTTTTTGGATGAGTT 58.197 39.130 0.00 0.00 0.00 3.01
8267 8966 4.430441 AGTTCAGGGTTTAGATCCACTCT 58.570 43.478 0.00 0.00 38.06 3.24
8268 8967 4.468153 AGTTCAGGGTTTAGATCCACTCTC 59.532 45.833 0.00 0.00 35.28 3.20
8270 8969 2.101582 CAGGGTTTAGATCCACTCTCGG 59.898 54.545 0.00 0.00 35.28 4.63
8271 8970 1.413077 GGGTTTAGATCCACTCTCGGG 59.587 57.143 0.00 0.00 35.28 5.14
8272 8971 2.385803 GGTTTAGATCCACTCTCGGGA 58.614 52.381 0.00 0.00 39.14 5.14
8274 8973 3.388350 GGTTTAGATCCACTCTCGGGATT 59.612 47.826 0.00 0.00 45.05 3.01
8291 8994 6.423182 TCGGGATTTATTTCAGAATTCCTGT 58.577 36.000 0.65 0.00 43.38 4.00
8381 9084 5.940192 ATCTTGCATCGTAGTTTTTCACA 57.060 34.783 0.00 0.00 0.00 3.58
8384 9087 2.867368 TGCATCGTAGTTTTTCACACGT 59.133 40.909 0.00 0.00 33.91 4.49
8564 9267 1.947456 GAGAACCCAAAGCTTGACGTT 59.053 47.619 0.00 2.08 0.00 3.99
8613 9316 1.299850 CGGTGTGCTCTTGTGTCGA 60.300 57.895 0.00 0.00 0.00 4.20
8644 9347 2.809446 CATTACGCTCGTTCCAGATCA 58.191 47.619 0.00 0.00 0.00 2.92
8657 9360 5.163509 CGTTCCAGATCATCCAAGAGACTAA 60.164 44.000 0.00 0.00 0.00 2.24
8699 9403 1.736032 CGTCGGTTTGGGTTTTGCAAA 60.736 47.619 8.05 8.05 0.00 3.68
8723 9427 1.886542 GTTCGCTTTTCCCACCATTCT 59.113 47.619 0.00 0.00 0.00 2.40
8789 9493 4.943705 GCTAGACCAAATTCAAGGATGACA 59.056 41.667 0.00 0.00 34.61 3.58
8795 9499 5.835280 ACCAAATTCAAGGATGACAGAGTTT 59.165 36.000 0.00 0.00 34.61 2.66
8801 9505 6.611613 TCAAGGATGACAGAGTTTCATAGT 57.388 37.500 0.00 0.00 33.70 2.12
8808 9512 8.417106 GGATGACAGAGTTTCATAGTCTTATGA 58.583 37.037 0.00 0.00 42.97 2.15
8911 9615 2.332654 GCCGCTCCAATTTGTCGGT 61.333 57.895 17.35 0.00 41.89 4.69
8915 9619 1.001815 CGCTCCAATTTGTCGGTTGTT 60.002 47.619 0.00 0.00 0.00 2.83
8992 9697 5.656416 CCCAAGCCTTCCAAATCATAAAGTA 59.344 40.000 0.00 0.00 0.00 2.24
9007 9712 1.821216 AAGTACATGGGCGAAAGTGG 58.179 50.000 0.00 0.00 0.00 4.00
9090 9795 7.081349 GTGTTTCCAAATAATGTCATCGTCAA 58.919 34.615 0.00 0.00 0.00 3.18
9122 9827 3.492102 AAGTGTAGGTCATGCACAAGT 57.508 42.857 8.42 0.00 46.08 3.16
9123 9828 3.492102 AGTGTAGGTCATGCACAAGTT 57.508 42.857 8.42 0.00 46.08 2.66
9124 9829 4.617253 AGTGTAGGTCATGCACAAGTTA 57.383 40.909 8.42 0.00 46.08 2.24
9125 9830 4.569943 AGTGTAGGTCATGCACAAGTTAG 58.430 43.478 8.42 0.00 46.08 2.34
9126 9831 4.040461 AGTGTAGGTCATGCACAAGTTAGT 59.960 41.667 8.42 0.00 46.08 2.24
9127 9832 4.152402 GTGTAGGTCATGCACAAGTTAGTG 59.848 45.833 0.56 0.00 43.41 2.74
9128 9833 3.769739 AGGTCATGCACAAGTTAGTGA 57.230 42.857 8.92 0.00 42.05 3.41
9129 9834 3.403038 AGGTCATGCACAAGTTAGTGAC 58.597 45.455 4.58 4.58 42.05 3.67
9130 9835 2.484264 GGTCATGCACAAGTTAGTGACC 59.516 50.000 14.27 14.27 45.90 4.02
9131 9836 3.403038 GTCATGCACAAGTTAGTGACCT 58.597 45.455 8.92 0.00 42.05 3.85
9132 9837 3.815401 GTCATGCACAAGTTAGTGACCTT 59.185 43.478 8.92 0.00 42.05 3.50
9133 9838 4.994852 GTCATGCACAAGTTAGTGACCTTA 59.005 41.667 8.92 0.00 42.05 2.69
9134 9839 5.120830 GTCATGCACAAGTTAGTGACCTTAG 59.879 44.000 8.92 0.00 42.05 2.18
9135 9840 4.948341 TGCACAAGTTAGTGACCTTAGA 57.052 40.909 8.92 0.00 42.05 2.10
9136 9841 5.284861 TGCACAAGTTAGTGACCTTAGAA 57.715 39.130 8.92 0.00 42.05 2.10
9137 9842 5.054477 TGCACAAGTTAGTGACCTTAGAAC 58.946 41.667 8.92 0.00 42.05 3.01
9138 9843 4.150098 GCACAAGTTAGTGACCTTAGAACG 59.850 45.833 8.92 0.00 42.05 3.95
9139 9844 5.526115 CACAAGTTAGTGACCTTAGAACGA 58.474 41.667 0.00 0.00 42.05 3.85
9140 9845 5.981315 CACAAGTTAGTGACCTTAGAACGAA 59.019 40.000 0.00 0.00 42.05 3.85
9141 9846 6.144080 CACAAGTTAGTGACCTTAGAACGAAG 59.856 42.308 0.00 0.00 42.05 3.79
9179 9884 5.970592 TCATCCACTATGAGTTCAGAACTG 58.029 41.667 21.00 8.55 43.03 3.16
9180 9885 4.808414 TCCACTATGAGTTCAGAACTGG 57.192 45.455 21.00 14.52 43.03 4.00
9181 9886 3.055819 TCCACTATGAGTTCAGAACTGGC 60.056 47.826 21.00 7.74 43.03 4.85
9182 9887 3.055530 CCACTATGAGTTCAGAACTGGCT 60.056 47.826 21.00 7.24 43.03 4.75
9183 9888 3.931468 CACTATGAGTTCAGAACTGGCTG 59.069 47.826 21.00 10.25 43.03 4.85
9184 9889 2.486472 ATGAGTTCAGAACTGGCTGG 57.514 50.000 21.00 0.00 43.03 4.85
9185 9890 1.131638 TGAGTTCAGAACTGGCTGGT 58.868 50.000 21.00 0.00 43.03 4.00
9186 9891 1.202687 TGAGTTCAGAACTGGCTGGTG 60.203 52.381 21.00 0.00 43.03 4.17
9187 9892 0.536006 AGTTCAGAACTGGCTGGTGC 60.536 55.000 15.41 0.00 41.01 5.01
9188 9893 0.819259 GTTCAGAACTGGCTGGTGCA 60.819 55.000 6.00 0.00 41.91 4.57
9189 9894 0.535780 TTCAGAACTGGCTGGTGCAG 60.536 55.000 1.93 0.00 41.91 4.41
9190 9895 1.970114 CAGAACTGGCTGGTGCAGG 60.970 63.158 0.00 0.00 41.91 4.85
9191 9896 2.674380 GAACTGGCTGGTGCAGGG 60.674 66.667 0.00 0.00 41.91 4.45
9192 9897 3.177884 AACTGGCTGGTGCAGGGA 61.178 61.111 0.00 0.00 41.91 4.20
9193 9898 3.497884 AACTGGCTGGTGCAGGGAC 62.498 63.158 0.00 0.00 41.91 4.46
9198 9903 2.360350 CTGGTGCAGGGACGCATT 60.360 61.111 0.00 0.00 45.26 3.56
9199 9904 2.359850 TGGTGCAGGGACGCATTC 60.360 61.111 0.00 0.00 45.26 2.67
9200 9905 3.499737 GGTGCAGGGACGCATTCG 61.500 66.667 0.00 0.00 45.26 3.34
9201 9906 3.499737 GTGCAGGGACGCATTCGG 61.500 66.667 0.00 0.00 45.26 4.30
9202 9907 4.015406 TGCAGGGACGCATTCGGT 62.015 61.111 0.00 0.00 40.69 4.69
9203 9908 3.195698 GCAGGGACGCATTCGGTC 61.196 66.667 0.00 0.00 40.69 4.79
9204 9909 2.511600 CAGGGACGCATTCGGTCC 60.512 66.667 2.38 2.38 40.69 4.46
9205 9910 4.143333 AGGGACGCATTCGGTCCG 62.143 66.667 4.39 4.39 40.69 4.79
9207 9912 4.137872 GGACGCATTCGGTCCGGA 62.138 66.667 12.29 0.00 40.69 5.14
9208 9913 2.106332 GACGCATTCGGTCCGGAT 59.894 61.111 7.81 5.01 40.69 4.18
9209 9914 2.202878 ACGCATTCGGTCCGGATG 60.203 61.111 25.88 25.88 44.77 3.51
9212 9917 3.723172 CATTCGGTCCGGATGCTG 58.277 61.111 19.59 0.00 36.03 4.41
9213 9918 1.153369 CATTCGGTCCGGATGCTGT 60.153 57.895 19.59 0.00 36.03 4.40
9214 9919 1.144057 ATTCGGTCCGGATGCTGTC 59.856 57.895 7.81 0.00 0.00 3.51
9215 9920 2.311688 ATTCGGTCCGGATGCTGTCC 62.312 60.000 7.81 1.01 44.10 4.02
9222 9927 2.410469 GGATGCTGTCCAATGCGC 59.590 61.111 0.00 0.00 46.96 6.09
9223 9928 2.410469 GATGCTGTCCAATGCGCC 59.590 61.111 4.18 0.00 0.00 6.53
9224 9929 3.459378 GATGCTGTCCAATGCGCCG 62.459 63.158 4.18 0.00 0.00 6.46
9225 9930 3.974835 ATGCTGTCCAATGCGCCGA 62.975 57.895 4.18 0.00 0.00 5.54
9226 9931 4.166011 GCTGTCCAATGCGCCGAC 62.166 66.667 4.18 5.99 0.00 4.79
9227 9932 2.741985 CTGTCCAATGCGCCGACA 60.742 61.111 4.18 10.57 35.34 4.35
9228 9933 2.046411 TGTCCAATGCGCCGACAT 60.046 55.556 4.18 0.00 31.74 3.06
9229 9934 0.809636 CTGTCCAATGCGCCGACATA 60.810 55.000 4.18 0.00 36.03 2.29
9230 9935 0.391793 TGTCCAATGCGCCGACATAA 60.392 50.000 4.18 0.00 31.74 1.90
9231 9936 0.730265 GTCCAATGCGCCGACATAAA 59.270 50.000 4.18 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.890474 CTTTCGATGGCCGTCCCG 60.890 66.667 19.51 9.58 39.75 5.14
23 24 2.513897 CCTTTCGATGGCCGTCCC 60.514 66.667 19.51 0.00 39.75 4.46
24 25 2.513897 CCCTTTCGATGGCCGTCC 60.514 66.667 19.51 1.92 39.75 4.79
25 26 2.513897 CCCCTTTCGATGGCCGTC 60.514 66.667 15.54 15.54 39.75 4.79
26 27 4.796495 GCCCCTTTCGATGGCCGT 62.796 66.667 0.00 0.00 39.30 5.68
27 28 4.794648 TGCCCCTTTCGATGGCCG 62.795 66.667 11.70 0.00 44.72 6.13
28 29 2.830370 CTGCCCCTTTCGATGGCC 60.830 66.667 11.70 0.00 44.72 5.36
29 30 2.830370 CCTGCCCCTTTCGATGGC 60.830 66.667 8.38 8.38 45.56 4.40
30 31 2.830370 GCCTGCCCCTTTCGATGG 60.830 66.667 0.00 0.00 0.00 3.51
31 32 3.204827 CGCCTGCCCCTTTCGATG 61.205 66.667 0.00 0.00 0.00 3.84
32 33 3.391665 CTCGCCTGCCCCTTTCGAT 62.392 63.158 0.00 0.00 0.00 3.59
33 34 4.082523 CTCGCCTGCCCCTTTCGA 62.083 66.667 0.00 0.00 0.00 3.71
38 39 4.888325 ATAGCCTCGCCTGCCCCT 62.888 66.667 0.00 0.00 0.00 4.79
39 40 4.632974 CATAGCCTCGCCTGCCCC 62.633 72.222 0.00 0.00 0.00 5.80
40 41 4.632974 CCATAGCCTCGCCTGCCC 62.633 72.222 0.00 0.00 0.00 5.36
43 44 3.855352 CTCGCCATAGCCTCGCCTG 62.855 68.421 0.00 0.00 34.57 4.85
44 45 3.610669 CTCGCCATAGCCTCGCCT 61.611 66.667 0.00 0.00 34.57 5.52
45 46 4.671569 CCTCGCCATAGCCTCGCC 62.672 72.222 0.00 0.00 34.57 5.54
46 47 3.565910 CTCCTCGCCATAGCCTCGC 62.566 68.421 0.00 0.00 34.57 5.03
47 48 2.647875 CTCCTCGCCATAGCCTCG 59.352 66.667 0.00 0.00 34.57 4.63
48 49 2.578714 CCCTCCTCGCCATAGCCTC 61.579 68.421 0.00 0.00 34.57 4.70
49 50 2.525381 CCCTCCTCGCCATAGCCT 60.525 66.667 0.00 0.00 34.57 4.58
50 51 3.631046 CCCCTCCTCGCCATAGCC 61.631 72.222 0.00 0.00 34.57 3.93
51 52 3.631046 CCCCCTCCTCGCCATAGC 61.631 72.222 0.00 0.00 0.00 2.97
65 66 3.162154 CCTTAGCCCGTCTCCCCC 61.162 72.222 0.00 0.00 0.00 5.40
66 67 3.162154 CCCTTAGCCCGTCTCCCC 61.162 72.222 0.00 0.00 0.00 4.81
67 68 2.365237 ACCCTTAGCCCGTCTCCC 60.365 66.667 0.00 0.00 0.00 4.30
68 69 2.732619 CCACCCTTAGCCCGTCTCC 61.733 68.421 0.00 0.00 0.00 3.71
69 70 1.957765 GACCACCCTTAGCCCGTCTC 61.958 65.000 0.00 0.00 0.00 3.36
70 71 1.988406 GACCACCCTTAGCCCGTCT 60.988 63.158 0.00 0.00 0.00 4.18
71 72 2.582978 GACCACCCTTAGCCCGTC 59.417 66.667 0.00 0.00 0.00 4.79
72 73 3.387947 CGACCACCCTTAGCCCGT 61.388 66.667 0.00 0.00 0.00 5.28
73 74 4.832608 GCGACCACCCTTAGCCCG 62.833 72.222 0.00 0.00 0.00 6.13
74 75 4.484872 GGCGACCACCCTTAGCCC 62.485 72.222 0.00 0.00 41.81 5.19
75 76 4.832608 CGGCGACCACCCTTAGCC 62.833 72.222 0.00 0.00 44.00 3.93
76 77 4.832608 CCGGCGACCACCCTTAGC 62.833 72.222 9.30 0.00 0.00 3.09
77 78 4.157120 CCCGGCGACCACCCTTAG 62.157 72.222 9.30 0.00 0.00 2.18
78 79 4.700448 TCCCGGCGACCACCCTTA 62.700 66.667 9.30 0.00 0.00 2.69
86 87 4.436998 CACTCTGGTCCCGGCGAC 62.437 72.222 9.30 13.02 41.15 5.19
92 93 4.083862 GTCGGCCACTCTGGTCCC 62.084 72.222 2.24 0.00 39.48 4.46
93 94 4.436998 CGTCGGCCACTCTGGTCC 62.437 72.222 2.24 0.00 39.48 4.46
94 95 4.436998 CCGTCGGCCACTCTGGTC 62.437 72.222 2.24 0.00 40.46 4.02
107 108 4.443266 AGCTTGCCTCTCGCCGTC 62.443 66.667 0.00 0.00 36.24 4.79
108 109 4.749310 CAGCTTGCCTCTCGCCGT 62.749 66.667 0.00 0.00 36.24 5.68
109 110 4.441695 TCAGCTTGCCTCTCGCCG 62.442 66.667 0.00 0.00 36.24 6.46
110 111 2.511145 CTCAGCTTGCCTCTCGCC 60.511 66.667 0.00 0.00 36.24 5.54
111 112 2.511145 CCTCAGCTTGCCTCTCGC 60.511 66.667 0.00 0.00 38.31 5.03
112 113 2.186384 CCCTCAGCTTGCCTCTCG 59.814 66.667 0.00 0.00 0.00 4.04
113 114 1.078567 CACCCTCAGCTTGCCTCTC 60.079 63.158 0.00 0.00 0.00 3.20
114 115 2.600729 CCACCCTCAGCTTGCCTCT 61.601 63.158 0.00 0.00 0.00 3.69
115 116 2.045536 CCACCCTCAGCTTGCCTC 60.046 66.667 0.00 0.00 0.00 4.70
116 117 2.856000 ACCACCCTCAGCTTGCCT 60.856 61.111 0.00 0.00 0.00 4.75
117 118 2.360475 GACCACCCTCAGCTTGCC 60.360 66.667 0.00 0.00 0.00 4.52
118 119 2.743928 CGACCACCCTCAGCTTGC 60.744 66.667 0.00 0.00 0.00 4.01
119 120 2.743928 GCGACCACCCTCAGCTTG 60.744 66.667 0.00 0.00 0.00 4.01
120 121 4.021925 GGCGACCACCCTCAGCTT 62.022 66.667 0.00 0.00 0.00 3.74
123 124 4.135153 CTCGGCGACCACCCTCAG 62.135 72.222 4.99 0.00 0.00 3.35
138 139 4.131088 GTCGACCACTCCGGCCTC 62.131 72.222 3.51 0.00 39.03 4.70
141 142 4.773117 GTCGTCGACCACTCCGGC 62.773 72.222 14.60 0.00 39.03 6.13
142 143 4.456253 CGTCGTCGACCACTCCGG 62.456 72.222 19.29 0.00 39.71 5.14
143 144 3.364249 CTCGTCGTCGACCACTCCG 62.364 68.421 19.29 7.05 41.35 4.63
144 145 2.479650 CTCGTCGTCGACCACTCC 59.520 66.667 19.29 0.00 41.35 3.85
145 146 2.479650 CCTCGTCGTCGACCACTC 59.520 66.667 19.29 0.00 41.35 3.51
146 147 3.054503 CCCTCGTCGTCGACCACT 61.055 66.667 19.29 0.00 41.35 4.00
147 148 4.112341 CCCCTCGTCGTCGACCAC 62.112 72.222 19.29 6.61 41.35 4.16
150 151 2.827642 ATCCCCCTCGTCGTCGAC 60.828 66.667 15.51 15.51 41.35 4.20
151 152 1.689243 TAGATCCCCCTCGTCGTCGA 61.689 60.000 4.42 4.42 44.12 4.20
152 153 1.227764 TAGATCCCCCTCGTCGTCG 60.228 63.158 0.00 0.00 38.55 5.12
153 154 0.890090 CCTAGATCCCCCTCGTCGTC 60.890 65.000 0.00 0.00 0.00 4.20
154 155 1.150992 CCTAGATCCCCCTCGTCGT 59.849 63.158 0.00 0.00 0.00 4.34
155 156 2.269529 GCCTAGATCCCCCTCGTCG 61.270 68.421 0.00 0.00 0.00 5.12
156 157 2.269529 CGCCTAGATCCCCCTCGTC 61.270 68.421 0.00 0.00 0.00 4.20
157 158 2.203509 CGCCTAGATCCCCCTCGT 60.204 66.667 0.00 0.00 0.00 4.18
158 159 3.686045 GCGCCTAGATCCCCCTCG 61.686 72.222 0.00 0.00 0.00 4.63
159 160 3.686045 CGCGCCTAGATCCCCCTC 61.686 72.222 0.00 0.00 0.00 4.30
160 161 4.220163 TCGCGCCTAGATCCCCCT 62.220 66.667 0.00 0.00 0.00 4.79
161 162 3.686045 CTCGCGCCTAGATCCCCC 61.686 72.222 0.00 0.00 0.00 5.40
162 163 2.597805 TCTCGCGCCTAGATCCCC 60.598 66.667 0.00 0.00 0.00 4.81
163 164 2.958576 CTCTCGCGCCTAGATCCC 59.041 66.667 0.00 0.00 0.00 3.85
164 165 0.956410 TAGCTCTCGCGCCTAGATCC 60.956 60.000 0.00 0.00 42.32 3.36
165 166 0.875728 TTAGCTCTCGCGCCTAGATC 59.124 55.000 0.00 0.54 42.32 2.75
166 167 0.594110 GTTAGCTCTCGCGCCTAGAT 59.406 55.000 0.00 0.00 42.32 1.98
167 168 0.464013 AGTTAGCTCTCGCGCCTAGA 60.464 55.000 0.00 4.14 42.32 2.43
168 169 0.040781 GAGTTAGCTCTCGCGCCTAG 60.041 60.000 0.00 0.00 42.32 3.02
169 170 2.023318 GAGTTAGCTCTCGCGCCTA 58.977 57.895 0.00 0.00 42.32 3.93
170 171 2.802106 GAGTTAGCTCTCGCGCCT 59.198 61.111 0.00 0.00 42.32 5.52
178 179 6.443934 TCTCTCACACAATAGAGTTAGCTC 57.556 41.667 0.00 0.00 40.17 4.09
179 180 6.435904 AGTTCTCTCACACAATAGAGTTAGCT 59.564 38.462 0.00 0.00 40.17 3.32
180 181 6.626302 AGTTCTCTCACACAATAGAGTTAGC 58.374 40.000 0.00 0.00 40.17 3.09
181 182 7.254852 GGAGTTCTCTCACACAATAGAGTTAG 58.745 42.308 0.00 0.00 42.05 2.34
182 183 6.127980 CGGAGTTCTCTCACACAATAGAGTTA 60.128 42.308 0.00 0.00 42.05 2.24
183 184 5.336055 CGGAGTTCTCTCACACAATAGAGTT 60.336 44.000 0.00 0.00 42.05 3.01
184 185 4.156922 CGGAGTTCTCTCACACAATAGAGT 59.843 45.833 0.00 0.00 42.05 3.24
185 186 4.156922 ACGGAGTTCTCTCACACAATAGAG 59.843 45.833 0.00 0.00 37.78 2.43
186 187 4.079970 ACGGAGTTCTCTCACACAATAGA 58.920 43.478 0.00 0.00 37.78 1.98
187 188 4.442375 ACGGAGTTCTCTCACACAATAG 57.558 45.455 0.00 0.00 37.78 1.73
203 204 6.438259 TTCTAAACTCTCTACATGACGGAG 57.562 41.667 0.00 3.92 0.00 4.63
204 205 6.829229 TTTCTAAACTCTCTACATGACGGA 57.171 37.500 0.00 0.00 0.00 4.69
205 206 7.313646 TCTTTTCTAAACTCTCTACATGACGG 58.686 38.462 0.00 0.00 0.00 4.79
206 207 8.237949 TCTCTTTTCTAAACTCTCTACATGACG 58.762 37.037 0.00 0.00 0.00 4.35
207 208 9.915629 TTCTCTTTTCTAAACTCTCTACATGAC 57.084 33.333 0.00 0.00 0.00 3.06
224 225 7.206687 TCACTCAGTTCTCTCTTTCTCTTTTC 58.793 38.462 0.00 0.00 0.00 2.29
240 241 4.339247 CCCATGTTCAAACTTCACTCAGTT 59.661 41.667 0.00 0.00 38.74 3.16
241 242 3.885297 CCCATGTTCAAACTTCACTCAGT 59.115 43.478 0.00 0.00 0.00 3.41
310 315 2.443255 ACCTTCCAGTCATGTCCAGTTT 59.557 45.455 0.00 0.00 0.00 2.66
313 318 2.867109 AACCTTCCAGTCATGTCCAG 57.133 50.000 0.00 0.00 0.00 3.86
511 521 7.980099 TGAAGATAGAAAGGGATAAAGAACGTC 59.020 37.037 0.00 0.00 0.00 4.34
515 526 8.393959 AGGTGAAGATAGAAAGGGATAAAGAA 57.606 34.615 0.00 0.00 0.00 2.52
519 530 9.280456 ACTAAAGGTGAAGATAGAAAGGGATAA 57.720 33.333 0.00 0.00 0.00 1.75
561 572 3.973305 TGGCCTGAATGATATGTCCACTA 59.027 43.478 3.32 0.00 0.00 2.74
572 583 0.700564 AAGAGCCTTGGCCTGAATGA 59.299 50.000 3.32 0.00 0.00 2.57
579 590 1.474478 GCTAGAAAAAGAGCCTTGGCC 59.526 52.381 8.17 0.00 32.25 5.36
598 610 9.956720 AAAGAGCATTAACATCTTGTATTATGC 57.043 29.630 0.00 0.00 38.08 3.14
611 623 9.806203 CCATTAATCATGAAAAGAGCATTAACA 57.194 29.630 0.00 0.00 34.31 2.41
813 839 9.880157 AAGTGTCTCAACTTTAGTACAACTTTA 57.120 29.630 0.00 0.00 37.05 1.85
814 840 8.788325 AAGTGTCTCAACTTTAGTACAACTTT 57.212 30.769 0.00 0.00 37.05 2.66
824 850 9.199982 CGTCCTAAAATAAGTGTCTCAACTTTA 57.800 33.333 0.00 0.00 40.77 1.85
825 851 7.172703 CCGTCCTAAAATAAGTGTCTCAACTTT 59.827 37.037 0.00 0.00 40.77 2.66
826 852 6.649557 CCGTCCTAAAATAAGTGTCTCAACTT 59.350 38.462 0.00 0.00 42.89 2.66
827 853 6.014840 TCCGTCCTAAAATAAGTGTCTCAACT 60.015 38.462 0.00 0.00 0.00 3.16
828 854 6.161381 TCCGTCCTAAAATAAGTGTCTCAAC 58.839 40.000 0.00 0.00 0.00 3.18
829 855 6.349243 TCCGTCCTAAAATAAGTGTCTCAA 57.651 37.500 0.00 0.00 0.00 3.02
830 856 5.105473 CCTCCGTCCTAAAATAAGTGTCTCA 60.105 44.000 0.00 0.00 0.00 3.27
831 857 5.349809 CCTCCGTCCTAAAATAAGTGTCTC 58.650 45.833 0.00 0.00 0.00 3.36
832 858 4.161754 CCCTCCGTCCTAAAATAAGTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
833 859 4.161001 TCCCTCCGTCCTAAAATAAGTGTC 59.839 45.833 0.00 0.00 0.00 3.67
834 860 4.098894 TCCCTCCGTCCTAAAATAAGTGT 58.901 43.478 0.00 0.00 0.00 3.55
835 861 4.161754 ACTCCCTCCGTCCTAAAATAAGTG 59.838 45.833 0.00 0.00 0.00 3.16
836 862 4.359996 ACTCCCTCCGTCCTAAAATAAGT 58.640 43.478 0.00 0.00 0.00 2.24
837 863 6.667558 ATACTCCCTCCGTCCTAAAATAAG 57.332 41.667 0.00 0.00 0.00 1.73
840 866 8.912614 AATATATACTCCCTCCGTCCTAAAAT 57.087 34.615 0.00 0.00 0.00 1.82
841 867 8.731591 AAATATATACTCCCTCCGTCCTAAAA 57.268 34.615 0.00 0.00 0.00 1.52
842 868 8.731591 AAAATATATACTCCCTCCGTCCTAAA 57.268 34.615 0.00 0.00 0.00 1.85
843 869 8.731591 AAAAATATATACTCCCTCCGTCCTAA 57.268 34.615 0.00 0.00 0.00 2.69
870 896 1.943693 CGTGCTTTGCAAACGGGTG 60.944 57.895 8.05 0.00 41.47 4.61
871 897 2.058829 CTCGTGCTTTGCAAACGGGT 62.059 55.000 19.00 0.00 41.47 5.28
872 898 1.370414 CTCGTGCTTTGCAAACGGG 60.370 57.895 19.00 13.78 41.47 5.28
873 899 2.010817 GCTCGTGCTTTGCAAACGG 61.011 57.895 19.00 12.19 41.47 4.44
875 901 2.330231 TATGCTCGTGCTTTGCAAAC 57.670 45.000 8.05 6.31 41.47 2.93
876 902 4.693538 TTATATGCTCGTGCTTTGCAAA 57.306 36.364 12.14 12.14 41.47 3.68
877 903 4.155826 AGTTTATATGCTCGTGCTTTGCAA 59.844 37.500 11.19 0.00 41.47 4.08
883 909 6.982852 ACATACTAGTTTATATGCTCGTGCT 58.017 36.000 11.19 0.00 40.48 4.40
884 910 8.738199 TTACATACTAGTTTATATGCTCGTGC 57.262 34.615 0.00 1.71 40.20 5.34
898 924 9.828039 GCCCTTAGTACATTTTTACATACTAGT 57.172 33.333 0.00 0.00 33.01 2.57
913 940 0.974010 CCGAGTGGGCCCTTAGTACA 60.974 60.000 25.70 0.00 0.00 2.90
953 981 2.742372 CTCGACCCAAAGGCGGTG 60.742 66.667 0.00 0.00 36.11 4.94
999 1035 2.972505 CGGTGTGTGGTCTGGTGC 60.973 66.667 0.00 0.00 0.00 5.01
1131 1169 0.765510 GGGCGGGAGATTGATACCTT 59.234 55.000 0.00 0.00 0.00 3.50
1196 1589 0.675522 GAAAACTCGCAATCCGGGGA 60.676 55.000 0.00 0.00 43.33 4.81
1251 1644 4.323477 CAACCGACGGCCAGGGAA 62.323 66.667 15.39 0.00 0.00 3.97
1365 1758 0.616891 AACCTAACCCAGCCCTAACG 59.383 55.000 0.00 0.00 0.00 3.18
1379 1772 3.557686 GCCCGAGTGGTAAAAGAAACCTA 60.558 47.826 0.00 0.00 37.91 3.08
1387 1780 0.109723 AGCAAGCCCGAGTGGTAAAA 59.890 50.000 0.00 0.00 36.04 1.52
1438 1832 6.208644 CAATTACCAACGGAATCAATCATCC 58.791 40.000 0.00 0.00 0.00 3.51
1466 1860 3.000041 CACCTGCAACGAACTATAAGCA 59.000 45.455 0.00 0.00 0.00 3.91
1615 2009 7.120579 CCAACAAGCAACCTAGTGTGAAATATA 59.879 37.037 0.00 0.00 0.00 0.86
1616 2010 6.071952 CCAACAAGCAACCTAGTGTGAAATAT 60.072 38.462 0.00 0.00 0.00 1.28
1810 2204 7.063780 GCAAACATTCAGGGAAATGATTAACTG 59.936 37.037 3.78 0.00 38.64 3.16
1886 2280 2.502130 TCAAACAGGAAACCCCAAAACC 59.498 45.455 0.00 0.00 37.41 3.27
1929 2323 2.890311 TCCAAAGGTCACGCATGAAATT 59.110 40.909 0.00 0.00 36.31 1.82
2269 2663 2.101700 GCCCGATGCTTCTGAAAGG 58.898 57.895 0.00 0.00 36.87 3.11
2342 2736 2.838813 TCTCAGGAGACTCCGAGAAGTA 59.161 50.000 28.59 15.60 42.75 2.24
2621 3015 8.328758 AGGGTCATCATTTAGATAAGTGAACAA 58.671 33.333 2.44 0.00 35.90 2.83
2628 3022 8.159447 TCCAATCAGGGTCATCATTTAGATAAG 58.841 37.037 0.00 0.00 38.24 1.73
2631 3025 6.520021 TCCAATCAGGGTCATCATTTAGAT 57.480 37.500 0.00 0.00 38.24 1.98
2636 3030 5.274822 ACAAATCCAATCAGGGTCATCATT 58.725 37.500 0.00 0.00 38.24 2.57
2798 3192 7.923414 ATGGAAATTAAGTTAGCGAAGAACT 57.077 32.000 0.00 0.00 38.81 3.01
2821 3215 8.482943 TGTGGAAACAGCAGTATACAATACTAT 58.517 33.333 5.50 0.00 44.46 2.12
2856 3250 4.261801 GCTAAAAGATTCTACACTGGGCA 58.738 43.478 0.00 0.00 0.00 5.36
2858 3252 5.104259 AGGCTAAAAGATTCTACACTGGG 57.896 43.478 0.00 0.00 0.00 4.45
2873 3267 4.623932 ACAGATGTGACTGAAGGCTAAA 57.376 40.909 0.00 0.00 40.63 1.85
2933 3327 0.523519 GCAAAGCAGCTTCCAGTACC 59.476 55.000 8.48 0.00 0.00 3.34
3096 3490 5.190992 TGATGATGGCTTAACATGATTGC 57.809 39.130 0.00 0.00 0.00 3.56
3354 3754 7.061441 CACAATCTAGCAAATAAAGCACAACTG 59.939 37.037 0.00 0.00 0.00 3.16
3451 3851 3.420839 AGCAAACAAACAGAAACCTCG 57.579 42.857 0.00 0.00 0.00 4.63
3507 3907 8.248945 TCGAACTATTTTGAGAACCCTACTTAG 58.751 37.037 0.00 0.00 0.00 2.18
3593 3993 1.336877 TCGAGCGTCTTGTTGAATCG 58.663 50.000 0.00 0.00 0.00 3.34
3624 4024 4.839668 TTGTAACGCATTTAGCCAAACT 57.160 36.364 0.00 0.00 41.38 2.66
3629 4029 4.981794 ACAAGATTGTAACGCATTTAGCC 58.018 39.130 0.00 0.00 40.16 3.93
3705 4105 5.544650 AGTGCAAAGCTGATAAAAATTGCT 58.455 33.333 14.57 0.00 42.59 3.91
4028 4431 3.436028 TACGGAGGGGAGAGGGGG 61.436 72.222 0.00 0.00 0.00 5.40
4060 4463 8.415950 TCCAAACTGCCAAATAGATAAAAGAA 57.584 30.769 0.00 0.00 0.00 2.52
4071 4474 5.435291 TCAAATGTTTCCAAACTGCCAAAT 58.565 33.333 3.92 0.00 39.59 2.32
4368 4771 7.012704 GCTGGAAGATAGAAACTTGATGCAATA 59.987 37.037 0.00 0.00 34.07 1.90
4930 5333 5.177327 CCACTGCATCAAATTTGTTACCAAC 59.823 40.000 17.47 3.33 0.00 3.77
4998 5401 4.662468 TTCTTCATCATCTTCTCCCTCG 57.338 45.455 0.00 0.00 0.00 4.63
5193 5596 2.232452 AGAAGACATGGGAAGTGACTCG 59.768 50.000 0.00 0.00 0.00 4.18
5240 5643 6.540189 TGAAACATTGCTAGAAATAGCCTCTC 59.460 38.462 0.00 0.00 42.17 3.20
5388 5791 3.264897 GCTGCAGATACACGCGGG 61.265 66.667 20.43 6.92 34.96 6.13
5535 5947 2.380084 TTGACTGTAATCCACTCGGC 57.620 50.000 0.00 0.00 0.00 5.54
5536 5948 3.198068 CCATTGACTGTAATCCACTCGG 58.802 50.000 0.00 0.00 0.00 4.63
5537 5949 3.861840 ACCATTGACTGTAATCCACTCG 58.138 45.455 0.00 0.00 0.00 4.18
5538 5950 9.209175 GAATATACCATTGACTGTAATCCACTC 57.791 37.037 0.00 0.00 0.00 3.51
5539 5951 8.938883 AGAATATACCATTGACTGTAATCCACT 58.061 33.333 0.00 0.00 0.00 4.00
5540 5952 9.209175 GAGAATATACCATTGACTGTAATCCAC 57.791 37.037 0.00 0.00 0.00 4.02
5541 5953 8.375506 GGAGAATATACCATTGACTGTAATCCA 58.624 37.037 0.00 0.00 0.00 3.41
5542 5954 8.375506 TGGAGAATATACCATTGACTGTAATCC 58.624 37.037 0.00 0.00 0.00 3.01
5543 5955 9.209175 GTGGAGAATATACCATTGACTGTAATC 57.791 37.037 0.00 0.00 38.48 1.75
5588 6000 3.634568 TCAAACTTGTATTGTTGCCCG 57.365 42.857 0.00 0.00 0.00 6.13
5590 6002 4.305769 TGCATCAAACTTGTATTGTTGCC 58.694 39.130 15.62 3.74 45.89 4.52
5712 6124 2.293677 TTGATACAGCTACAGGTGCG 57.706 50.000 8.29 0.00 46.62 5.34
5745 6157 4.522971 GGCCTTGATGGACGACTC 57.477 61.111 0.00 0.00 38.35 3.36
5787 6199 1.234821 GGCGTTTTGGAGTGATGTGA 58.765 50.000 0.00 0.00 0.00 3.58
5887 6302 5.666969 TTTGAGTTATGAACACGTTCCAG 57.333 39.130 7.43 0.00 38.77 3.86
5995 6410 0.117541 TCACTGGCCCCTAAGGTGTA 59.882 55.000 0.00 0.00 38.26 2.90
6595 7055 1.144503 CCATCATCAAGGAGAAGGGGG 59.855 57.143 0.00 0.00 0.00 5.40
6900 7361 3.684788 CAGGATTGAAACTACGACCCTTG 59.315 47.826 0.00 0.00 0.00 3.61
6952 7413 4.521146 AGTATTTTCGGACGGAGAGAGTA 58.479 43.478 0.00 0.00 0.00 2.59
6953 7414 3.354467 AGTATTTTCGGACGGAGAGAGT 58.646 45.455 0.00 0.00 0.00 3.24
6954 7415 4.106197 CAAGTATTTTCGGACGGAGAGAG 58.894 47.826 0.00 0.00 0.00 3.20
6955 7416 3.508793 ACAAGTATTTTCGGACGGAGAGA 59.491 43.478 0.00 0.00 0.00 3.10
6956 7417 3.846360 ACAAGTATTTTCGGACGGAGAG 58.154 45.455 0.00 0.00 0.00 3.20
6957 7418 3.947910 ACAAGTATTTTCGGACGGAGA 57.052 42.857 0.00 0.00 0.00 3.71
6958 7419 3.424433 GCAACAAGTATTTTCGGACGGAG 60.424 47.826 0.00 0.00 0.00 4.63
6959 7420 2.481185 GCAACAAGTATTTTCGGACGGA 59.519 45.455 0.00 0.00 0.00 4.69
6960 7421 2.723618 CGCAACAAGTATTTTCGGACGG 60.724 50.000 0.00 0.00 0.00 4.79
6961 7422 2.156117 TCGCAACAAGTATTTTCGGACG 59.844 45.455 0.00 0.00 0.00 4.79
6962 7423 3.799137 TCGCAACAAGTATTTTCGGAC 57.201 42.857 0.00 0.00 0.00 4.79
6963 7424 4.815040 TTTCGCAACAAGTATTTTCGGA 57.185 36.364 0.00 0.00 0.00 4.55
6964 7425 5.164100 CCATTTTCGCAACAAGTATTTTCGG 60.164 40.000 0.00 0.00 0.00 4.30
6965 7426 5.627367 TCCATTTTCGCAACAAGTATTTTCG 59.373 36.000 0.00 0.00 0.00 3.46
6966 7427 7.581011 ATCCATTTTCGCAACAAGTATTTTC 57.419 32.000 0.00 0.00 0.00 2.29
6967 7428 8.085296 TGTATCCATTTTCGCAACAAGTATTTT 58.915 29.630 0.00 0.00 0.00 1.82
6968 7429 7.598278 TGTATCCATTTTCGCAACAAGTATTT 58.402 30.769 0.00 0.00 0.00 1.40
6969 7430 7.151999 TGTATCCATTTTCGCAACAAGTATT 57.848 32.000 0.00 0.00 0.00 1.89
6970 7431 6.751514 TGTATCCATTTTCGCAACAAGTAT 57.248 33.333 0.00 0.00 0.00 2.12
6971 7432 6.561737 TTGTATCCATTTTCGCAACAAGTA 57.438 33.333 0.00 0.00 0.00 2.24
6972 7433 5.446143 TTGTATCCATTTTCGCAACAAGT 57.554 34.783 0.00 0.00 0.00 3.16
6973 7434 6.585702 TCATTTGTATCCATTTTCGCAACAAG 59.414 34.615 0.00 0.00 0.00 3.16
6974 7435 6.450545 TCATTTGTATCCATTTTCGCAACAA 58.549 32.000 0.00 0.00 0.00 2.83
6975 7436 6.018589 TCATTTGTATCCATTTTCGCAACA 57.981 33.333 0.00 0.00 0.00 3.33
6976 7437 6.942886 TTCATTTGTATCCATTTTCGCAAC 57.057 33.333 0.00 0.00 0.00 4.17
6977 7438 6.035866 GCATTCATTTGTATCCATTTTCGCAA 59.964 34.615 0.00 0.00 0.00 4.85
6978 7439 5.519566 GCATTCATTTGTATCCATTTTCGCA 59.480 36.000 0.00 0.00 0.00 5.10
6979 7440 5.519566 TGCATTCATTTGTATCCATTTTCGC 59.480 36.000 0.00 0.00 0.00 4.70
6980 7441 7.650504 AGATGCATTCATTTGTATCCATTTTCG 59.349 33.333 0.00 0.00 38.91 3.46
6981 7442 8.882415 AGATGCATTCATTTGTATCCATTTTC 57.118 30.769 0.00 0.00 38.91 2.29
6985 7446 9.754382 GTTTTAGATGCATTCATTTGTATCCAT 57.246 29.630 0.00 0.00 38.91 3.41
6986 7447 8.970020 AGTTTTAGATGCATTCATTTGTATCCA 58.030 29.630 0.00 0.00 38.91 3.41
7016 7477 9.653516 CCTAGGAATGGATGTATCTAGATGTAT 57.346 37.037 15.79 9.11 0.00 2.29
7017 7478 8.846804 TCCTAGGAATGGATGTATCTAGATGTA 58.153 37.037 15.79 4.44 0.00 2.29
7018 7479 7.617723 GTCCTAGGAATGGATGTATCTAGATGT 59.382 40.741 14.65 1.25 35.87 3.06
7019 7480 7.617329 TGTCCTAGGAATGGATGTATCTAGATG 59.383 40.741 14.65 0.00 35.87 2.90
7020 7481 7.713518 TGTCCTAGGAATGGATGTATCTAGAT 58.286 38.462 14.65 10.73 35.87 1.98
7021 7482 7.103745 TGTCCTAGGAATGGATGTATCTAGA 57.896 40.000 14.65 0.00 35.87 2.43
7022 7483 7.453126 ACTTGTCCTAGGAATGGATGTATCTAG 59.547 40.741 14.65 5.89 35.87 2.43
7023 7484 7.306013 ACTTGTCCTAGGAATGGATGTATCTA 58.694 38.462 14.65 0.00 35.87 1.98
7024 7485 6.146760 ACTTGTCCTAGGAATGGATGTATCT 58.853 40.000 14.65 0.00 35.87 1.98
7025 7486 6.426646 ACTTGTCCTAGGAATGGATGTATC 57.573 41.667 14.65 0.00 35.87 2.24
7026 7487 8.511748 AATACTTGTCCTAGGAATGGATGTAT 57.488 34.615 14.65 12.73 35.87 2.29
7027 7488 7.931015 AATACTTGTCCTAGGAATGGATGTA 57.069 36.000 14.65 11.11 35.87 2.29
7028 7489 6.831664 AATACTTGTCCTAGGAATGGATGT 57.168 37.500 14.65 9.32 35.87 3.06
7029 7490 6.712547 GGAAATACTTGTCCTAGGAATGGATG 59.287 42.308 14.65 3.65 35.87 3.51
7030 7491 6.464465 CGGAAATACTTGTCCTAGGAATGGAT 60.464 42.308 14.65 5.94 35.87 3.41
7031 7492 5.163343 CGGAAATACTTGTCCTAGGAATGGA 60.163 44.000 14.65 3.53 0.00 3.41
7032 7493 5.057149 CGGAAATACTTGTCCTAGGAATGG 58.943 45.833 14.65 8.72 0.00 3.16
7033 7494 5.057149 CCGGAAATACTTGTCCTAGGAATG 58.943 45.833 14.65 9.12 0.00 2.67
7034 7495 4.966805 TCCGGAAATACTTGTCCTAGGAAT 59.033 41.667 14.65 0.00 0.00 3.01
7035 7496 4.161001 GTCCGGAAATACTTGTCCTAGGAA 59.839 45.833 14.65 0.00 28.70 3.36
7036 7497 3.703052 GTCCGGAAATACTTGTCCTAGGA 59.297 47.826 5.23 7.62 0.00 2.94
7037 7498 3.490419 CGTCCGGAAATACTTGTCCTAGG 60.490 52.174 5.23 0.82 0.00 3.02
7038 7499 3.490419 CCGTCCGGAAATACTTGTCCTAG 60.490 52.174 5.23 0.00 37.50 3.02
7039 7500 2.428171 CCGTCCGGAAATACTTGTCCTA 59.572 50.000 5.23 0.00 37.50 2.94
7040 7501 1.206371 CCGTCCGGAAATACTTGTCCT 59.794 52.381 5.23 0.00 37.50 3.85
7041 7502 1.205417 TCCGTCCGGAAATACTTGTCC 59.795 52.381 5.23 0.00 42.05 4.02
7042 7503 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
7043 7504 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
7044 7505 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
7045 7506 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
7046 7507 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
7047 7508 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
7048 7509 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
7049 7510 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
7050 7511 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
7051 7512 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
7052 7513 0.846015 TTATACTCCCTCCGTCCGGA 59.154 55.000 0.00 0.00 42.90 5.14
7053 7514 1.202855 TCTTATACTCCCTCCGTCCGG 60.203 57.143 0.00 0.00 0.00 5.14
7054 7515 1.878734 GTCTTATACTCCCTCCGTCCG 59.121 57.143 0.00 0.00 0.00 4.79
7055 7516 1.878734 CGTCTTATACTCCCTCCGTCC 59.121 57.143 0.00 0.00 0.00 4.79
7056 7517 2.570135 ACGTCTTATACTCCCTCCGTC 58.430 52.381 0.00 0.00 0.00 4.79
7057 7518 2.725221 ACGTCTTATACTCCCTCCGT 57.275 50.000 0.00 0.00 0.00 4.69
7058 7519 4.382345 AAAACGTCTTATACTCCCTCCG 57.618 45.455 0.00 0.00 0.00 4.63
7059 7520 7.531280 GTTTAAAACGTCTTATACTCCCTCC 57.469 40.000 0.00 0.00 0.00 4.30
7153 7639 2.652941 TGTCGGACCGTAATACAACC 57.347 50.000 14.79 0.00 0.00 3.77
7154 7640 4.671377 TGTATGTCGGACCGTAATACAAC 58.329 43.478 27.21 18.42 35.35 3.32
7155 7641 4.979943 TGTATGTCGGACCGTAATACAA 57.020 40.909 27.21 17.51 35.35 2.41
7156 7642 4.979943 TTGTATGTCGGACCGTAATACA 57.020 40.909 26.37 26.37 35.91 2.29
7157 7643 6.437928 TGTATTGTATGTCGGACCGTAATAC 58.562 40.000 23.34 23.34 32.96 1.89
7158 7644 6.631971 TGTATTGTATGTCGGACCGTAATA 57.368 37.500 14.79 10.15 0.00 0.98
7159 7645 5.518848 TGTATTGTATGTCGGACCGTAAT 57.481 39.130 14.79 11.15 0.00 1.89
7162 7648 3.514645 GTTGTATTGTATGTCGGACCGT 58.485 45.455 14.79 0.00 0.00 4.83
7163 7649 2.861935 GGTTGTATTGTATGTCGGACCG 59.138 50.000 7.84 7.84 0.00 4.79
7210 7696 7.863375 CCGTGGTAATGTCAGTAAAAATCAAAA 59.137 33.333 0.00 0.00 0.00 2.44
7211 7697 7.364200 CCGTGGTAATGTCAGTAAAAATCAAA 58.636 34.615 0.00 0.00 0.00 2.69
7212 7698 6.072397 CCCGTGGTAATGTCAGTAAAAATCAA 60.072 38.462 0.00 0.00 0.00 2.57
7213 7699 5.413213 CCCGTGGTAATGTCAGTAAAAATCA 59.587 40.000 0.00 0.00 0.00 2.57
7214 7700 5.675323 GCCCGTGGTAATGTCAGTAAAAATC 60.675 44.000 0.00 0.00 0.00 2.17
7215 7701 4.157105 GCCCGTGGTAATGTCAGTAAAAAT 59.843 41.667 0.00 0.00 0.00 1.82
7217 7703 3.075884 GCCCGTGGTAATGTCAGTAAAA 58.924 45.455 0.00 0.00 0.00 1.52
7218 7704 2.702261 GCCCGTGGTAATGTCAGTAAA 58.298 47.619 0.00 0.00 0.00 2.01
7219 7705 1.404449 CGCCCGTGGTAATGTCAGTAA 60.404 52.381 0.00 0.00 0.00 2.24
7221 7707 1.079405 CGCCCGTGGTAATGTCAGT 60.079 57.895 0.00 0.00 0.00 3.41
7223 7709 2.435234 GCGCCCGTGGTAATGTCA 60.435 61.111 0.00 0.00 0.00 3.58
7224 7710 3.199891 GGCGCCCGTGGTAATGTC 61.200 66.667 18.11 0.00 0.00 3.06
7225 7711 4.789123 GGGCGCCCGTGGTAATGT 62.789 66.667 33.60 0.00 0.00 2.71
7226 7712 4.787286 TGGGCGCCCGTGGTAATG 62.787 66.667 39.00 0.00 39.42 1.90
7227 7713 3.352990 ATTGGGCGCCCGTGGTAAT 62.353 57.895 39.00 28.61 39.42 1.89
7228 7714 3.980442 GATTGGGCGCCCGTGGTAA 62.980 63.158 39.00 27.68 39.42 2.85
7239 7811 1.304134 AGTTTCGTGGGGATTGGGC 60.304 57.895 0.00 0.00 0.00 5.36
7244 7816 1.876416 CGTGTTCAGTTTCGTGGGGAT 60.876 52.381 0.00 0.00 0.00 3.85
7246 7818 1.503818 CCGTGTTCAGTTTCGTGGGG 61.504 60.000 0.00 0.00 0.00 4.96
7250 7822 1.433837 GCACCCGTGTTCAGTTTCGT 61.434 55.000 0.00 0.00 0.00 3.85
7251 7823 1.278637 GCACCCGTGTTCAGTTTCG 59.721 57.895 0.00 0.00 0.00 3.46
7256 7828 0.029300 CTTTGTGCACCCGTGTTCAG 59.971 55.000 15.69 0.00 0.00 3.02
7261 7833 3.977244 GCCCTTTGTGCACCCGTG 61.977 66.667 15.69 1.80 0.00 4.94
7269 7841 1.048160 AAACCTGGGTGCCCTTTGTG 61.048 55.000 8.91 0.00 36.94 3.33
7274 7846 1.215423 GATATCAAACCTGGGTGCCCT 59.785 52.381 8.91 0.00 36.94 5.19
7343 7915 2.441750 TGGAGCACCCCTATATGGAAAC 59.558 50.000 0.00 0.00 38.35 2.78
7344 7916 2.782922 TGGAGCACCCCTATATGGAAA 58.217 47.619 0.00 0.00 38.35 3.13
7384 7971 9.710818 ACTCCCTCTGTAAACTAATATAAGACA 57.289 33.333 0.00 0.00 0.00 3.41
7436 8023 9.783081 ACATTACATGCAGAATAACATATCTGA 57.217 29.630 6.95 0.00 44.64 3.27
7472 8059 8.934507 TTGTTAAACAAGTTTGGTATTCCTTG 57.065 30.769 8.37 0.00 40.05 3.61
7552 8142 3.513515 AGTTCAAGGCAACAAAAGTTCCA 59.486 39.130 0.00 0.00 41.41 3.53
7553 8143 4.123497 AGTTCAAGGCAACAAAAGTTCC 57.877 40.909 0.00 0.00 41.41 3.62
7690 8288 2.978978 TCAGACAGTCCCCAGATCAAAA 59.021 45.455 0.00 0.00 0.00 2.44
7691 8289 2.619931 TCAGACAGTCCCCAGATCAAA 58.380 47.619 0.00 0.00 0.00 2.69
7700 8298 2.392662 TCATCTCCATCAGACAGTCCC 58.607 52.381 0.00 0.00 32.26 4.46
7715 8313 2.348666 GCGTTCTGCGTACAATTCATCT 59.651 45.455 0.00 0.00 43.66 2.90
7835 8435 2.371841 ACACACTGGCCATTCTCTGTAA 59.628 45.455 5.51 0.00 0.00 2.41
8029 8629 3.425162 AAAACTTCCTCGCAGAAGGAT 57.575 42.857 15.77 4.77 46.24 3.24
8032 8632 5.270812 GAAGTAAAACTTCCTCGCAGAAG 57.729 43.478 8.32 11.38 46.68 2.85
8205 8902 4.637534 AGATAAAGAAACGATGCAGCACAT 59.362 37.500 1.53 0.00 43.54 3.21
8221 8918 7.177392 ACTCATCCAAAAAGACCCAAGATAAAG 59.823 37.037 0.00 0.00 0.00 1.85
8229 8927 4.144297 CTGAACTCATCCAAAAAGACCCA 58.856 43.478 0.00 0.00 0.00 4.51
8248 8947 3.024547 CGAGAGTGGATCTAAACCCTGA 58.975 50.000 0.00 0.00 38.84 3.86
8267 8966 6.423182 ACAGGAATTCTGAAATAAATCCCGA 58.577 36.000 5.23 0.00 46.18 5.14
8268 8967 6.543831 AGACAGGAATTCTGAAATAAATCCCG 59.456 38.462 5.23 0.00 46.18 5.14
8270 8969 8.511604 TCAGACAGGAATTCTGAAATAAATCC 57.488 34.615 5.23 0.00 45.20 3.01
8291 8994 2.225491 GCACCTTTAATGCAACGTCAGA 59.775 45.455 0.00 0.00 42.88 3.27
8541 9244 0.179032 TCAAGCTTTGGGTTCTCGCA 60.179 50.000 0.00 0.00 34.75 5.10
8564 9267 4.409901 TCCTTCTCCATGCTATCATCAACA 59.590 41.667 0.00 0.00 0.00 3.33
8600 9303 1.540363 GGGTCTTTCGACACAAGAGCA 60.540 52.381 22.26 0.00 46.30 4.26
8613 9316 2.763651 GCGTAATGCTCGGGTCTTT 58.236 52.632 0.00 0.00 41.73 2.52
8644 9347 7.907389 TCACTTACAATGTTAGTCTCTTGGAT 58.093 34.615 1.69 0.00 0.00 3.41
8657 9360 2.162681 GCTTGGCCTCACTTACAATGT 58.837 47.619 3.32 0.00 0.00 2.71
8699 9403 0.822121 GGTGGGAAAAGCGAACCTGT 60.822 55.000 0.00 0.00 0.00 4.00
8789 9493 8.079203 CGCTACATCATAAGACTATGAAACTCT 58.921 37.037 0.00 0.00 45.51 3.24
8795 9499 4.522789 TGCCGCTACATCATAAGACTATGA 59.477 41.667 0.00 0.00 46.23 2.15
8801 9505 4.450976 ACAAATGCCGCTACATCATAAGA 58.549 39.130 0.00 0.00 0.00 2.10
8808 9512 4.122776 CTCTTCTACAAATGCCGCTACAT 58.877 43.478 0.00 0.00 0.00 2.29
8904 9608 1.604755 CCGGATTTGAACAACCGACAA 59.395 47.619 14.93 0.00 46.94 3.18
8911 9615 3.216187 TCCAAGACCGGATTTGAACAA 57.784 42.857 9.46 0.00 0.00 2.83
8915 9619 2.158813 GGCTATCCAAGACCGGATTTGA 60.159 50.000 9.46 4.31 43.58 2.69
8951 9656 1.222567 GGGGCCCTCCTAAGATCAAA 58.777 55.000 24.38 0.00 35.33 2.69
8967 9672 1.870064 ATGATTTGGAAGGCTTGGGG 58.130 50.000 3.46 0.00 0.00 4.96
8981 9686 5.885912 ACTTTCGCCCATGTACTTTATGATT 59.114 36.000 0.00 0.00 0.00 2.57
8992 9697 1.973281 CTGCCACTTTCGCCCATGT 60.973 57.895 0.00 0.00 0.00 3.21
9007 9712 0.877743 GGCTCAGTTTCTTGGACTGC 59.122 55.000 0.00 0.00 43.23 4.40
9036 9741 1.514087 GGTCCTACACCGCGATCAA 59.486 57.895 8.23 0.00 34.56 2.57
9046 9751 1.600107 GCCAATGACGGGTCCTACA 59.400 57.895 0.00 0.00 0.00 2.74
9094 9799 6.658816 TGTGCATGACCTACACTTAAATCAAT 59.341 34.615 0.00 0.00 35.33 2.57
9100 9805 4.968259 ACTTGTGCATGACCTACACTTAA 58.032 39.130 0.00 0.00 35.33 1.85
9122 9827 3.575256 TGCCTTCGTTCTAAGGTCACTAA 59.425 43.478 4.67 0.00 46.61 2.24
9123 9828 3.159472 TGCCTTCGTTCTAAGGTCACTA 58.841 45.455 4.67 0.00 46.61 2.74
9124 9829 1.968493 TGCCTTCGTTCTAAGGTCACT 59.032 47.619 4.67 0.00 46.61 3.41
9125 9830 2.450609 TGCCTTCGTTCTAAGGTCAC 57.549 50.000 4.67 0.00 46.61 3.67
9126 9831 2.367567 AGTTGCCTTCGTTCTAAGGTCA 59.632 45.455 4.67 1.18 46.61 4.02
9127 9832 2.737252 CAGTTGCCTTCGTTCTAAGGTC 59.263 50.000 4.67 0.00 46.61 3.85
9128 9833 2.367567 TCAGTTGCCTTCGTTCTAAGGT 59.632 45.455 4.67 0.00 46.61 3.50
9130 9835 5.235186 CCATATCAGTTGCCTTCGTTCTAAG 59.765 44.000 0.00 0.00 0.00 2.18
9131 9836 5.105106 TCCATATCAGTTGCCTTCGTTCTAA 60.105 40.000 0.00 0.00 0.00 2.10
9132 9837 4.404394 TCCATATCAGTTGCCTTCGTTCTA 59.596 41.667 0.00 0.00 0.00 2.10
9133 9838 3.197766 TCCATATCAGTTGCCTTCGTTCT 59.802 43.478 0.00 0.00 0.00 3.01
9134 9839 3.531538 TCCATATCAGTTGCCTTCGTTC 58.468 45.455 0.00 0.00 0.00 3.95
9135 9840 3.627395 TCCATATCAGTTGCCTTCGTT 57.373 42.857 0.00 0.00 0.00 3.85
9136 9841 3.134623 TGATCCATATCAGTTGCCTTCGT 59.865 43.478 0.00 0.00 37.20 3.85
9137 9842 3.732212 TGATCCATATCAGTTGCCTTCG 58.268 45.455 0.00 0.00 37.20 3.79
9138 9843 4.699257 GGATGATCCATATCAGTTGCCTTC 59.301 45.833 6.60 0.00 45.17 3.46
9139 9844 4.105217 TGGATGATCCATATCAGTTGCCTT 59.895 41.667 10.75 0.00 45.17 4.35
9140 9845 3.654321 TGGATGATCCATATCAGTTGCCT 59.346 43.478 10.75 0.00 45.17 4.75
9141 9846 4.025040 TGGATGATCCATATCAGTTGCC 57.975 45.455 10.75 0.00 45.17 4.52
9152 9857 5.211201 TCTGAACTCATAGTGGATGATCCA 58.789 41.667 10.75 10.75 45.98 3.41
9153 9858 5.798125 TCTGAACTCATAGTGGATGATCC 57.202 43.478 4.05 4.05 43.78 3.36
9154 9859 6.700960 CAGTTCTGAACTCATAGTGGATGATC 59.299 42.308 19.65 0.00 43.78 2.92
9155 9860 6.407865 CCAGTTCTGAACTCATAGTGGATGAT 60.408 42.308 19.65 0.00 43.78 2.45
9156 9861 5.105187 CCAGTTCTGAACTCATAGTGGATGA 60.105 44.000 19.65 0.00 42.55 2.92
9157 9862 5.114780 CCAGTTCTGAACTCATAGTGGATG 58.885 45.833 19.65 6.16 40.46 3.51
9158 9863 4.383552 GCCAGTTCTGAACTCATAGTGGAT 60.384 45.833 19.65 0.00 40.46 3.41
9159 9864 3.055819 GCCAGTTCTGAACTCATAGTGGA 60.056 47.826 19.65 0.00 40.46 4.02
9160 9865 3.055530 AGCCAGTTCTGAACTCATAGTGG 60.056 47.826 19.65 17.46 40.46 4.00
9161 9866 3.931468 CAGCCAGTTCTGAACTCATAGTG 59.069 47.826 19.65 8.85 40.46 2.74
9162 9867 3.055530 CCAGCCAGTTCTGAACTCATAGT 60.056 47.826 19.65 1.45 40.46 2.12
9163 9868 3.055530 ACCAGCCAGTTCTGAACTCATAG 60.056 47.826 19.65 9.04 40.46 2.23
9164 9869 2.906389 ACCAGCCAGTTCTGAACTCATA 59.094 45.455 19.65 0.00 40.46 2.15
9165 9870 1.701847 ACCAGCCAGTTCTGAACTCAT 59.298 47.619 19.65 6.48 40.46 2.90
9166 9871 1.131638 ACCAGCCAGTTCTGAACTCA 58.868 50.000 19.65 0.00 40.46 3.41
9167 9872 1.517242 CACCAGCCAGTTCTGAACTC 58.483 55.000 19.65 10.20 40.46 3.01
9168 9873 0.536006 GCACCAGCCAGTTCTGAACT 60.536 55.000 17.00 17.00 44.06 3.01
9169 9874 0.819259 TGCACCAGCCAGTTCTGAAC 60.819 55.000 12.54 12.54 41.13 3.18
9170 9875 0.535780 CTGCACCAGCCAGTTCTGAA 60.536 55.000 1.00 0.00 41.13 3.02
9171 9876 1.071987 CTGCACCAGCCAGTTCTGA 59.928 57.895 1.00 0.00 41.13 3.27
9172 9877 1.970114 CCTGCACCAGCCAGTTCTG 60.970 63.158 0.00 0.00 41.13 3.02
9173 9878 2.433446 CCTGCACCAGCCAGTTCT 59.567 61.111 0.00 0.00 41.13 3.01
9174 9879 2.674380 CCCTGCACCAGCCAGTTC 60.674 66.667 0.00 0.00 41.13 3.01
9175 9880 3.177884 TCCCTGCACCAGCCAGTT 61.178 61.111 0.00 0.00 41.13 3.16
9176 9881 3.958860 GTCCCTGCACCAGCCAGT 61.959 66.667 0.00 0.00 41.13 4.00
9186 9891 3.195698 GACCGAATGCGTCCCTGC 61.196 66.667 0.00 0.00 35.23 4.85
9187 9892 2.511600 GGACCGAATGCGTCCCTG 60.512 66.667 3.95 0.00 34.08 4.45
9188 9893 4.143333 CGGACCGAATGCGTCCCT 62.143 66.667 8.64 0.00 37.38 4.20
9190 9895 3.441011 ATCCGGACCGAATGCGTCC 62.441 63.158 17.49 5.01 41.28 4.79
9191 9896 2.106332 ATCCGGACCGAATGCGTC 59.894 61.111 17.49 0.00 41.28 5.19
9192 9897 2.202878 CATCCGGACCGAATGCGT 60.203 61.111 17.49 0.00 41.28 5.24
9193 9898 3.640000 GCATCCGGACCGAATGCG 61.640 66.667 22.71 1.10 42.77 4.73
9194 9899 2.203070 AGCATCCGGACCGAATGC 60.203 61.111 28.63 28.63 38.43 3.56
9195 9900 1.153369 ACAGCATCCGGACCGAATG 60.153 57.895 17.49 13.08 0.00 2.67
9196 9901 1.144057 GACAGCATCCGGACCGAAT 59.856 57.895 17.49 0.00 0.00 3.34
9197 9902 2.577059 GACAGCATCCGGACCGAA 59.423 61.111 17.49 0.00 0.00 4.30
9198 9903 3.458163 GGACAGCATCCGGACCGA 61.458 66.667 17.49 1.45 37.88 4.69
9206 9911 2.410469 GGCGCATTGGACAGCATC 59.590 61.111 10.83 0.00 0.00 3.91
9207 9912 3.511595 CGGCGCATTGGACAGCAT 61.512 61.111 10.83 0.00 0.00 3.79
9208 9913 4.695993 TCGGCGCATTGGACAGCA 62.696 61.111 10.83 0.00 0.00 4.41
9209 9914 4.166011 GTCGGCGCATTGGACAGC 62.166 66.667 10.83 0.00 0.00 4.40
9210 9915 0.809636 TATGTCGGCGCATTGGACAG 60.810 55.000 21.39 0.58 43.22 3.51
9211 9916 0.391793 TTATGTCGGCGCATTGGACA 60.392 50.000 19.93 19.93 44.00 4.02
9212 9917 0.730265 TTTATGTCGGCGCATTGGAC 59.270 50.000 18.82 11.33 0.00 4.02
9213 9918 3.160872 TTTATGTCGGCGCATTGGA 57.839 47.368 18.82 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.