Multiple sequence alignment - TraesCS5B01G158800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G158800 chr5B 100.000 3983 0 0 1 3983 292965634 292969616 0.000000e+00 7356.0
1 TraesCS5B01G158800 chr5B 100.000 41 0 0 3 43 521853870 521853830 4.270000e-10 76.8
2 TraesCS5B01G158800 chr5D 96.977 3109 70 8 899 3983 258831978 258835086 0.000000e+00 5199.0
3 TraesCS5B01G158800 chr5D 91.919 198 15 1 42 238 376568427 376568230 3.920000e-70 276.0
4 TraesCS5B01G158800 chr5D 100.000 41 0 0 3 43 376568751 376568711 4.270000e-10 76.8
5 TraesCS5B01G158800 chr5A 95.171 2195 91 8 899 3083 343596576 343598765 0.000000e+00 3452.0
6 TraesCS5B01G158800 chr5A 86.957 483 35 6 3089 3549 343598813 343599289 5.900000e-143 518.0
7 TraesCS5B01G158800 chr5A 94.485 272 13 1 3714 3983 343599445 343599716 6.160000e-113 418.0
8 TraesCS5B01G158800 chr3B 83.562 876 117 25 1 866 773785436 773784578 0.000000e+00 795.0
9 TraesCS5B01G158800 chr3B 78.788 231 38 10 673 897 65192072 65192297 1.150000e-30 145.0
10 TraesCS5B01G158800 chr3B 88.793 116 13 0 453 568 773784955 773784840 4.150000e-30 143.0
11 TraesCS5B01G158800 chr3B 88.034 117 12 1 782 898 229499682 229499568 1.930000e-28 137.0
12 TraesCS5B01G158800 chr3B 95.122 41 2 0 3 43 17863506 17863546 9.240000e-07 65.8
13 TraesCS5B01G158800 chr4B 81.507 876 137 22 1 866 475172961 475172101 0.000000e+00 697.0
14 TraesCS5B01G158800 chr4B 75.570 307 61 13 591 891 545092210 545091912 5.370000e-29 139.0
15 TraesCS5B01G158800 chr4B 86.207 87 12 0 732 818 77008557 77008471 1.180000e-15 95.3
16 TraesCS5B01G158800 chr7D 93.434 198 12 1 42 238 95106668 95106471 3.890000e-75 292.0
17 TraesCS5B01G158800 chr7D 97.561 41 1 0 3 43 95107034 95106994 1.990000e-08 71.3
18 TraesCS5B01G158800 chr2D 93.434 198 12 1 42 238 59644423 59644226 3.890000e-75 292.0
19 TraesCS5B01G158800 chr2D 91.919 198 15 1 42 238 44618474 44618277 3.920000e-70 276.0
20 TraesCS5B01G158800 chr2D 100.000 41 0 0 3 43 59644747 59644707 4.270000e-10 76.8
21 TraesCS5B01G158800 chr7A 93.367 196 12 1 41 235 688266374 688266569 5.040000e-74 289.0
22 TraesCS5B01G158800 chr7A 78.176 307 53 10 591 891 644003808 644004106 2.440000e-42 183.0
23 TraesCS5B01G158800 chr7A 76.655 287 48 17 585 861 691619120 691618843 1.490000e-29 141.0
24 TraesCS5B01G158800 chr2A 92.462 199 14 1 41 238 775537509 775537311 2.340000e-72 283.0
25 TraesCS5B01G158800 chr1B 92.424 198 14 1 42 238 565993212 565993409 8.430000e-72 281.0
26 TraesCS5B01G158800 chr1B 97.561 41 1 0 3 43 113518050 113518010 1.990000e-08 71.3
27 TraesCS5B01G158800 chr4A 79.372 223 40 6 672 891 648672814 648672595 6.890000e-33 152.0
28 TraesCS5B01G158800 chr4A 75.000 228 36 13 669 892 740890042 740890252 7.090000e-13 86.1
29 TraesCS5B01G158800 chrUn 77.863 262 39 16 566 818 310629422 310629171 1.150000e-30 145.0
30 TraesCS5B01G158800 chr3A 76.140 285 53 14 585 861 434425602 434425325 6.940000e-28 135.0
31 TraesCS5B01G158800 chr6B 73.701 308 65 15 563 860 95447574 95447273 5.440000e-19 106.0
32 TraesCS5B01G158800 chr4D 100.000 41 0 0 3 43 509048295 509048255 4.270000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G158800 chr5B 292965634 292969616 3982 False 7356.000000 7356 100.000000 1 3983 1 chr5B.!!$F1 3982
1 TraesCS5B01G158800 chr5D 258831978 258835086 3108 False 5199.000000 5199 96.977000 899 3983 1 chr5D.!!$F1 3084
2 TraesCS5B01G158800 chr5A 343596576 343599716 3140 False 1462.666667 3452 92.204333 899 3983 3 chr5A.!!$F1 3084
3 TraesCS5B01G158800 chr3B 773784578 773785436 858 True 469.000000 795 86.177500 1 866 2 chr3B.!!$R2 865
4 TraesCS5B01G158800 chr4B 475172101 475172961 860 True 697.000000 697 81.507000 1 866 1 chr4B.!!$R2 865

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
517 548 0.035881 CGGATGTGGAGGATGGATGG 59.964 60.0 0.0 0.0 0.0 3.51 F
681 712 0.037590 CCTGGGTGGGAAATGACGAA 59.962 55.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2488 2538 0.747283 CACTCCCTGCATTCTCCAGC 60.747 60.000 0.00 0.0 0.00 4.85 R
3106 3282 4.038763 ACCAGCATGCAAAATCATGATAGG 59.961 41.667 21.98 2.8 44.94 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.453521 TCCACGACAAGCATAGTACCT 58.546 47.619 0.00 0.00 0.00 3.08
59 60 1.604185 GCAGACCTAGATAAGCAGCGG 60.604 57.143 0.00 0.00 0.00 5.52
164 165 3.699894 CGCCACCTGACCTGCTCT 61.700 66.667 0.00 0.00 0.00 4.09
192 193 2.993853 CCCTCCTTGTCCTGGCTC 59.006 66.667 0.00 0.00 0.00 4.70
275 276 0.170339 TCGTACACGCTGTGGATGAG 59.830 55.000 10.53 1.53 37.47 2.90
281 282 2.599597 GCTGTGGATGAGGCCCAT 59.400 61.111 0.00 2.04 38.43 4.00
428 429 3.798954 CTGATCCGCCGCCTTCCTC 62.799 68.421 0.00 0.00 0.00 3.71
466 467 3.953775 CCGTGGTTGGTGGGAGCT 61.954 66.667 0.00 0.00 0.00 4.09
514 545 2.443394 GGCGGATGTGGAGGATGGA 61.443 63.158 0.00 0.00 0.00 3.41
516 547 0.604780 GCGGATGTGGAGGATGGATG 60.605 60.000 0.00 0.00 0.00 3.51
517 548 0.035881 CGGATGTGGAGGATGGATGG 59.964 60.000 0.00 0.00 0.00 3.51
518 549 0.251077 GGATGTGGAGGATGGATGGC 60.251 60.000 0.00 0.00 0.00 4.40
519 550 0.604780 GATGTGGAGGATGGATGGCG 60.605 60.000 0.00 0.00 0.00 5.69
520 551 1.348008 ATGTGGAGGATGGATGGCGT 61.348 55.000 0.00 0.00 0.00 5.68
521 552 1.227674 GTGGAGGATGGATGGCGTC 60.228 63.158 0.00 0.00 0.00 5.19
522 553 2.029666 GGAGGATGGATGGCGTCG 59.970 66.667 0.00 0.00 0.00 5.12
523 554 2.797278 GGAGGATGGATGGCGTCGT 61.797 63.158 0.00 0.00 0.00 4.34
524 555 1.300233 GAGGATGGATGGCGTCGTC 60.300 63.158 0.00 0.00 0.00 4.20
525 556 2.658593 GGATGGATGGCGTCGTCG 60.659 66.667 2.62 0.00 40.37 5.12
526 557 2.104331 GATGGATGGCGTCGTCGT 59.896 61.111 2.62 0.00 39.49 4.34
527 558 1.944676 GATGGATGGCGTCGTCGTC 60.945 63.158 10.63 10.63 42.45 4.20
528 559 2.337749 GATGGATGGCGTCGTCGTCT 62.338 60.000 17.91 0.00 42.59 4.18
529 560 2.278013 GGATGGCGTCGTCGTCTC 60.278 66.667 17.91 5.54 42.59 3.36
530 561 2.648102 GATGGCGTCGTCGTCTCG 60.648 66.667 11.78 0.00 42.59 4.04
531 562 3.092192 GATGGCGTCGTCGTCTCGA 62.092 63.158 11.78 0.00 42.59 4.04
548 579 3.804786 TCGACAGAGAGAGAGACGTAT 57.195 47.619 0.00 0.00 0.00 3.06
549 580 3.449632 TCGACAGAGAGAGAGACGTATG 58.550 50.000 0.00 0.00 0.00 2.39
550 581 2.542178 CGACAGAGAGAGAGACGTATGG 59.458 54.545 0.00 0.00 0.00 2.74
551 582 2.875933 GACAGAGAGAGAGACGTATGGG 59.124 54.545 0.00 0.00 0.00 4.00
552 583 2.506231 ACAGAGAGAGAGACGTATGGGA 59.494 50.000 0.00 0.00 0.00 4.37
553 584 3.138304 CAGAGAGAGAGACGTATGGGAG 58.862 54.545 0.00 0.00 0.00 4.30
554 585 3.042682 AGAGAGAGAGACGTATGGGAGA 58.957 50.000 0.00 0.00 0.00 3.71
555 586 3.071023 AGAGAGAGAGACGTATGGGAGAG 59.929 52.174 0.00 0.00 0.00 3.20
556 587 3.042682 AGAGAGAGACGTATGGGAGAGA 58.957 50.000 0.00 0.00 0.00 3.10
557 588 3.456644 AGAGAGAGACGTATGGGAGAGAA 59.543 47.826 0.00 0.00 0.00 2.87
558 589 4.080243 AGAGAGAGACGTATGGGAGAGAAA 60.080 45.833 0.00 0.00 0.00 2.52
559 590 4.204012 AGAGAGACGTATGGGAGAGAAAG 58.796 47.826 0.00 0.00 0.00 2.62
560 591 4.080243 AGAGAGACGTATGGGAGAGAAAGA 60.080 45.833 0.00 0.00 0.00 2.52
561 592 4.204012 AGAGACGTATGGGAGAGAAAGAG 58.796 47.826 0.00 0.00 0.00 2.85
562 593 3.292460 AGACGTATGGGAGAGAAAGAGG 58.708 50.000 0.00 0.00 0.00 3.69
563 594 3.025262 GACGTATGGGAGAGAAAGAGGT 58.975 50.000 0.00 0.00 0.00 3.85
564 595 2.761208 ACGTATGGGAGAGAAAGAGGTG 59.239 50.000 0.00 0.00 0.00 4.00
565 596 2.101582 CGTATGGGAGAGAAAGAGGTGG 59.898 54.545 0.00 0.00 0.00 4.61
566 597 1.589414 ATGGGAGAGAAAGAGGTGGG 58.411 55.000 0.00 0.00 0.00 4.61
567 598 0.547712 TGGGAGAGAAAGAGGTGGGG 60.548 60.000 0.00 0.00 0.00 4.96
568 599 0.252742 GGGAGAGAAAGAGGTGGGGA 60.253 60.000 0.00 0.00 0.00 4.81
569 600 1.199615 GGAGAGAAAGAGGTGGGGAG 58.800 60.000 0.00 0.00 0.00 4.30
570 601 1.273324 GGAGAGAAAGAGGTGGGGAGA 60.273 57.143 0.00 0.00 0.00 3.71
571 602 2.107366 GAGAGAAAGAGGTGGGGAGAG 58.893 57.143 0.00 0.00 0.00 3.20
572 603 1.719378 AGAGAAAGAGGTGGGGAGAGA 59.281 52.381 0.00 0.00 0.00 3.10
573 604 2.107366 GAGAAAGAGGTGGGGAGAGAG 58.893 57.143 0.00 0.00 0.00 3.20
574 605 1.719378 AGAAAGAGGTGGGGAGAGAGA 59.281 52.381 0.00 0.00 0.00 3.10
575 606 2.107366 GAAAGAGGTGGGGAGAGAGAG 58.893 57.143 0.00 0.00 0.00 3.20
576 607 1.388174 AAGAGGTGGGGAGAGAGAGA 58.612 55.000 0.00 0.00 0.00 3.10
577 608 0.926293 AGAGGTGGGGAGAGAGAGAG 59.074 60.000 0.00 0.00 0.00 3.20
578 609 0.106217 GAGGTGGGGAGAGAGAGAGG 60.106 65.000 0.00 0.00 0.00 3.69
579 610 0.853586 AGGTGGGGAGAGAGAGAGGT 60.854 60.000 0.00 0.00 0.00 3.85
580 611 0.686112 GGTGGGGAGAGAGAGAGGTG 60.686 65.000 0.00 0.00 0.00 4.00
581 612 0.040499 GTGGGGAGAGAGAGAGGTGT 59.960 60.000 0.00 0.00 0.00 4.16
582 613 0.040351 TGGGGAGAGAGAGAGGTGTG 59.960 60.000 0.00 0.00 0.00 3.82
583 614 0.686112 GGGGAGAGAGAGAGGTGTGG 60.686 65.000 0.00 0.00 0.00 4.17
584 615 0.686112 GGGAGAGAGAGAGGTGTGGG 60.686 65.000 0.00 0.00 0.00 4.61
585 616 0.333312 GGAGAGAGAGAGGTGTGGGA 59.667 60.000 0.00 0.00 0.00 4.37
586 617 1.684869 GGAGAGAGAGAGGTGTGGGAG 60.685 61.905 0.00 0.00 0.00 4.30
587 618 1.283613 GAGAGAGAGAGGTGTGGGAGA 59.716 57.143 0.00 0.00 0.00 3.71
588 619 1.284785 AGAGAGAGAGGTGTGGGAGAG 59.715 57.143 0.00 0.00 0.00 3.20
589 620 1.283613 GAGAGAGAGGTGTGGGAGAGA 59.716 57.143 0.00 0.00 0.00 3.10
590 621 1.284785 AGAGAGAGGTGTGGGAGAGAG 59.715 57.143 0.00 0.00 0.00 3.20
591 622 1.283613 GAGAGAGGTGTGGGAGAGAGA 59.716 57.143 0.00 0.00 0.00 3.10
592 623 1.284785 AGAGAGGTGTGGGAGAGAGAG 59.715 57.143 0.00 0.00 0.00 3.20
593 624 1.283613 GAGAGGTGTGGGAGAGAGAGA 59.716 57.143 0.00 0.00 0.00 3.10
594 625 1.284785 AGAGGTGTGGGAGAGAGAGAG 59.715 57.143 0.00 0.00 0.00 3.20
595 626 0.334676 AGGTGTGGGAGAGAGAGAGG 59.665 60.000 0.00 0.00 0.00 3.69
596 627 0.040499 GGTGTGGGAGAGAGAGAGGT 59.960 60.000 0.00 0.00 0.00 3.85
597 628 1.181786 GTGTGGGAGAGAGAGAGGTG 58.818 60.000 0.00 0.00 0.00 4.00
598 629 0.613292 TGTGGGAGAGAGAGAGGTGC 60.613 60.000 0.00 0.00 0.00 5.01
599 630 1.379176 TGGGAGAGAGAGAGGTGCG 60.379 63.158 0.00 0.00 0.00 5.34
600 631 2.124693 GGGAGAGAGAGAGGTGCGG 61.125 68.421 0.00 0.00 0.00 5.69
601 632 2.781158 GGAGAGAGAGAGGTGCGGC 61.781 68.421 0.00 0.00 0.00 6.53
602 633 3.119709 GAGAGAGAGAGGTGCGGCG 62.120 68.421 0.51 0.51 0.00 6.46
603 634 4.200283 GAGAGAGAGGTGCGGCGG 62.200 72.222 9.78 0.00 0.00 6.13
620 651 4.779733 GGAGTGCGGGAGAGGGGA 62.780 72.222 0.00 0.00 0.00 4.81
621 652 3.151022 GAGTGCGGGAGAGGGGAG 61.151 72.222 0.00 0.00 0.00 4.30
622 653 4.787280 AGTGCGGGAGAGGGGAGG 62.787 72.222 0.00 0.00 0.00 4.30
623 654 4.779733 GTGCGGGAGAGGGGAGGA 62.780 72.222 0.00 0.00 0.00 3.71
624 655 4.465446 TGCGGGAGAGGGGAGGAG 62.465 72.222 0.00 0.00 0.00 3.69
627 658 3.773154 GGGAGAGGGGAGGAGGCT 61.773 72.222 0.00 0.00 0.00 4.58
628 659 2.404750 GGGAGAGGGGAGGAGGCTA 61.405 68.421 0.00 0.00 0.00 3.93
629 660 1.155155 GGAGAGGGGAGGAGGCTAG 59.845 68.421 0.00 0.00 0.00 3.42
630 661 1.155155 GAGAGGGGAGGAGGCTAGG 59.845 68.421 0.00 0.00 0.00 3.02
631 662 1.627460 AGAGGGGAGGAGGCTAGGT 60.627 63.158 0.00 0.00 0.00 3.08
632 663 1.152419 GAGGGGAGGAGGCTAGGTC 60.152 68.421 0.00 0.00 0.00 3.85
633 664 1.941820 AGGGGAGGAGGCTAGGTCA 60.942 63.158 0.00 0.00 0.00 4.02
634 665 1.237458 GGGGAGGAGGCTAGGTCAT 59.763 63.158 0.00 0.00 0.00 3.06
635 666 0.834261 GGGGAGGAGGCTAGGTCATC 60.834 65.000 0.00 0.00 0.00 2.92
636 667 0.189822 GGGAGGAGGCTAGGTCATCT 59.810 60.000 0.00 0.00 0.00 2.90
637 668 1.627864 GGAGGAGGCTAGGTCATCTC 58.372 60.000 0.00 0.00 0.00 2.75
638 669 1.627864 GAGGAGGCTAGGTCATCTCC 58.372 60.000 0.00 0.00 44.46 3.71
639 670 0.937441 AGGAGGCTAGGTCATCTCCA 59.063 55.000 10.35 0.00 46.02 3.86
640 671 1.507300 AGGAGGCTAGGTCATCTCCAT 59.493 52.381 10.35 0.00 46.02 3.41
641 672 2.090267 AGGAGGCTAGGTCATCTCCATT 60.090 50.000 10.35 0.00 46.02 3.16
642 673 2.038295 GGAGGCTAGGTCATCTCCATTG 59.962 54.545 0.00 0.00 43.78 2.82
643 674 2.038295 GAGGCTAGGTCATCTCCATTGG 59.962 54.545 0.00 0.00 0.00 3.16
644 675 1.072965 GGCTAGGTCATCTCCATTGGG 59.927 57.143 2.09 0.00 0.00 4.12
645 676 1.072965 GCTAGGTCATCTCCATTGGGG 59.927 57.143 2.09 0.00 38.37 4.96
646 677 1.072965 CTAGGTCATCTCCATTGGGGC 59.927 57.143 2.09 0.00 36.21 5.80
647 678 0.625683 AGGTCATCTCCATTGGGGCT 60.626 55.000 2.09 0.00 36.21 5.19
648 679 0.466922 GGTCATCTCCATTGGGGCTG 60.467 60.000 2.09 0.77 36.21 4.85
649 680 0.466922 GTCATCTCCATTGGGGCTGG 60.467 60.000 6.57 0.00 36.21 4.85
650 681 0.920763 TCATCTCCATTGGGGCTGGT 60.921 55.000 6.57 0.00 35.19 4.00
651 682 0.466922 CATCTCCATTGGGGCTGGTC 60.467 60.000 2.09 0.00 35.19 4.02
652 683 0.625683 ATCTCCATTGGGGCTGGTCT 60.626 55.000 2.09 0.00 35.19 3.85
653 684 1.077212 CTCCATTGGGGCTGGTCTG 60.077 63.158 2.09 0.00 35.19 3.51
654 685 1.852157 TCCATTGGGGCTGGTCTGT 60.852 57.895 2.09 0.00 35.19 3.41
655 686 1.077265 CCATTGGGGCTGGTCTGTT 59.923 57.895 0.00 0.00 0.00 3.16
656 687 0.542702 CCATTGGGGCTGGTCTGTTT 60.543 55.000 0.00 0.00 0.00 2.83
657 688 1.341080 CATTGGGGCTGGTCTGTTTT 58.659 50.000 0.00 0.00 0.00 2.43
658 689 2.524306 CATTGGGGCTGGTCTGTTTTA 58.476 47.619 0.00 0.00 0.00 1.52
659 690 2.990740 TTGGGGCTGGTCTGTTTTAT 57.009 45.000 0.00 0.00 0.00 1.40
660 691 4.277476 CATTGGGGCTGGTCTGTTTTATA 58.723 43.478 0.00 0.00 0.00 0.98
661 692 3.359695 TGGGGCTGGTCTGTTTTATAC 57.640 47.619 0.00 0.00 0.00 1.47
662 693 2.025699 TGGGGCTGGTCTGTTTTATACC 60.026 50.000 0.00 0.00 0.00 2.73
663 694 2.651455 GGGCTGGTCTGTTTTATACCC 58.349 52.381 0.00 0.00 31.97 3.69
664 695 2.241430 GGGCTGGTCTGTTTTATACCCT 59.759 50.000 0.00 0.00 31.97 4.34
665 696 3.279434 GGCTGGTCTGTTTTATACCCTG 58.721 50.000 0.00 0.00 31.97 4.45
666 697 3.279434 GCTGGTCTGTTTTATACCCTGG 58.721 50.000 0.00 0.00 31.97 4.45
667 698 3.886123 CTGGTCTGTTTTATACCCTGGG 58.114 50.000 12.28 12.28 31.97 4.45
668 699 3.261962 TGGTCTGTTTTATACCCTGGGT 58.738 45.455 24.15 24.15 40.16 4.51
669 700 3.009695 TGGTCTGTTTTATACCCTGGGTG 59.990 47.826 28.64 8.93 36.19 4.61
670 701 3.617284 GTCTGTTTTATACCCTGGGTGG 58.383 50.000 28.64 7.86 36.19 4.61
679 710 4.319133 CCTGGGTGGGAAATGACG 57.681 61.111 0.00 0.00 0.00 4.35
680 711 1.682849 CCTGGGTGGGAAATGACGA 59.317 57.895 0.00 0.00 0.00 4.20
681 712 0.037590 CCTGGGTGGGAAATGACGAA 59.962 55.000 0.00 0.00 0.00 3.85
682 713 1.546773 CCTGGGTGGGAAATGACGAAA 60.547 52.381 0.00 0.00 0.00 3.46
683 714 2.235016 CTGGGTGGGAAATGACGAAAA 58.765 47.619 0.00 0.00 0.00 2.29
684 715 2.825532 CTGGGTGGGAAATGACGAAAAT 59.174 45.455 0.00 0.00 0.00 1.82
685 716 2.560542 TGGGTGGGAAATGACGAAAATG 59.439 45.455 0.00 0.00 0.00 2.32
686 717 2.606108 GGTGGGAAATGACGAAAATGC 58.394 47.619 0.00 0.00 0.00 3.56
687 718 2.606108 GTGGGAAATGACGAAAATGCC 58.394 47.619 0.00 0.00 0.00 4.40
688 719 1.548269 TGGGAAATGACGAAAATGCCC 59.452 47.619 0.00 0.00 34.90 5.36
689 720 1.824852 GGGAAATGACGAAAATGCCCT 59.175 47.619 0.00 0.00 0.00 5.19
690 721 2.159240 GGGAAATGACGAAAATGCCCTC 60.159 50.000 0.00 0.00 0.00 4.30
691 722 2.477863 GGAAATGACGAAAATGCCCTCG 60.478 50.000 0.00 0.00 40.87 4.63
692 723 1.094785 AATGACGAAAATGCCCTCGG 58.905 50.000 0.00 0.00 39.38 4.63
693 724 0.748005 ATGACGAAAATGCCCTCGGG 60.748 55.000 0.00 0.00 39.38 5.14
712 743 2.371306 GGGGGCAATGTAATTACGTGT 58.629 47.619 11.06 0.00 32.46 4.49
713 744 2.098443 GGGGGCAATGTAATTACGTGTG 59.902 50.000 11.06 11.72 32.46 3.82
714 745 2.098443 GGGGCAATGTAATTACGTGTGG 59.902 50.000 11.06 5.74 32.46 4.17
715 746 2.750712 GGGCAATGTAATTACGTGTGGT 59.249 45.455 11.06 0.00 32.46 4.16
716 747 3.426963 GGGCAATGTAATTACGTGTGGTG 60.427 47.826 11.06 6.93 32.46 4.17
717 748 3.426963 GGCAATGTAATTACGTGTGGTGG 60.427 47.826 11.06 0.00 32.46 4.61
718 749 3.753842 CAATGTAATTACGTGTGGTGGC 58.246 45.455 11.06 0.00 32.46 5.01
719 750 2.545537 TGTAATTACGTGTGGTGGCA 57.454 45.000 10.92 0.00 0.00 4.92
720 751 2.144730 TGTAATTACGTGTGGTGGCAC 58.855 47.619 9.70 9.70 36.12 5.01
731 762 4.922026 GTGGCACGGACGGGTTGT 62.922 66.667 0.00 0.00 0.00 3.32
732 763 3.232483 TGGCACGGACGGGTTGTA 61.232 61.111 0.00 0.00 0.00 2.41
733 764 2.030862 GGCACGGACGGGTTGTAA 59.969 61.111 0.00 0.00 0.00 2.41
734 765 2.319841 GGCACGGACGGGTTGTAAC 61.320 63.158 0.00 0.00 0.00 2.50
735 766 1.301165 GCACGGACGGGTTGTAACT 60.301 57.895 0.00 0.00 0.00 2.24
736 767 0.038343 GCACGGACGGGTTGTAACTA 60.038 55.000 0.00 0.00 0.00 2.24
737 768 1.404583 GCACGGACGGGTTGTAACTAT 60.405 52.381 0.00 0.00 0.00 2.12
738 769 2.932187 GCACGGACGGGTTGTAACTATT 60.932 50.000 0.00 0.00 0.00 1.73
739 770 2.925563 CACGGACGGGTTGTAACTATTC 59.074 50.000 0.00 0.00 0.00 1.75
740 771 2.562298 ACGGACGGGTTGTAACTATTCA 59.438 45.455 0.00 0.00 0.00 2.57
741 772 3.196254 ACGGACGGGTTGTAACTATTCAT 59.804 43.478 0.00 0.00 0.00 2.57
742 773 4.186159 CGGACGGGTTGTAACTATTCATT 58.814 43.478 0.00 0.00 0.00 2.57
743 774 4.033587 CGGACGGGTTGTAACTATTCATTG 59.966 45.833 0.00 0.00 0.00 2.82
744 775 4.201881 GGACGGGTTGTAACTATTCATTGC 60.202 45.833 0.00 0.00 0.00 3.56
745 776 4.585879 ACGGGTTGTAACTATTCATTGCT 58.414 39.130 0.00 0.00 0.00 3.91
746 777 5.736813 ACGGGTTGTAACTATTCATTGCTA 58.263 37.500 0.00 0.00 0.00 3.49
747 778 5.583457 ACGGGTTGTAACTATTCATTGCTAC 59.417 40.000 0.00 0.00 0.00 3.58
748 779 5.583061 CGGGTTGTAACTATTCATTGCTACA 59.417 40.000 0.00 0.00 0.00 2.74
749 780 6.238103 CGGGTTGTAACTATTCATTGCTACAG 60.238 42.308 0.00 0.00 0.00 2.74
750 781 6.598064 GGGTTGTAACTATTCATTGCTACAGT 59.402 38.462 0.00 0.00 0.00 3.55
751 782 7.120726 GGGTTGTAACTATTCATTGCTACAGTT 59.879 37.037 0.00 0.00 0.00 3.16
752 783 7.962918 GGTTGTAACTATTCATTGCTACAGTTG 59.037 37.037 0.00 0.00 0.00 3.16
753 784 7.072177 TGTAACTATTCATTGCTACAGTTGC 57.928 36.000 0.00 0.00 31.75 4.17
754 785 5.567138 AACTATTCATTGCTACAGTTGCC 57.433 39.130 4.43 0.00 0.00 4.52
755 786 3.947834 ACTATTCATTGCTACAGTTGCCC 59.052 43.478 4.43 0.00 0.00 5.36
756 787 1.544724 TTCATTGCTACAGTTGCCCC 58.455 50.000 4.43 0.00 0.00 5.80
757 788 0.698238 TCATTGCTACAGTTGCCCCT 59.302 50.000 4.43 0.00 0.00 4.79
758 789 1.098050 CATTGCTACAGTTGCCCCTC 58.902 55.000 4.43 0.00 0.00 4.30
759 790 0.995024 ATTGCTACAGTTGCCCCTCT 59.005 50.000 4.43 0.00 0.00 3.69
760 791 0.324943 TTGCTACAGTTGCCCCTCTC 59.675 55.000 4.43 0.00 0.00 3.20
761 792 1.222113 GCTACAGTTGCCCCTCTCC 59.778 63.158 0.00 0.00 0.00 3.71
762 793 1.517832 CTACAGTTGCCCCTCTCCG 59.482 63.158 0.00 0.00 0.00 4.63
763 794 0.970937 CTACAGTTGCCCCTCTCCGA 60.971 60.000 0.00 0.00 0.00 4.55
764 795 0.325296 TACAGTTGCCCCTCTCCGAT 60.325 55.000 0.00 0.00 0.00 4.18
765 796 1.144936 CAGTTGCCCCTCTCCGATC 59.855 63.158 0.00 0.00 0.00 3.69
766 797 2.066999 AGTTGCCCCTCTCCGATCC 61.067 63.158 0.00 0.00 0.00 3.36
767 798 3.154473 TTGCCCCTCTCCGATCCG 61.154 66.667 0.00 0.00 0.00 4.18
768 799 3.672338 TTGCCCCTCTCCGATCCGA 62.672 63.158 0.00 0.00 0.00 4.55
769 800 3.607661 GCCCCTCTCCGATCCGAC 61.608 72.222 0.00 0.00 0.00 4.79
770 801 3.288290 CCCCTCTCCGATCCGACG 61.288 72.222 0.00 0.00 0.00 5.12
794 825 2.188994 GCTCTCCAGCGGCTTGAT 59.811 61.111 0.00 0.00 35.39 2.57
795 826 1.886777 GCTCTCCAGCGGCTTGATC 60.887 63.158 0.00 0.00 35.39 2.92
796 827 1.227497 CTCTCCAGCGGCTTGATCC 60.227 63.158 0.00 0.00 0.00 3.36
805 836 4.467084 GCTTGATCCGACGGCCCA 62.467 66.667 9.66 6.47 0.00 5.36
806 837 2.202932 CTTGATCCGACGGCCCAG 60.203 66.667 9.66 0.96 0.00 4.45
807 838 2.682136 TTGATCCGACGGCCCAGA 60.682 61.111 9.66 0.00 0.00 3.86
808 839 2.032860 CTTGATCCGACGGCCCAGAT 62.033 60.000 9.66 0.00 0.00 2.90
809 840 2.028125 TTGATCCGACGGCCCAGATC 62.028 60.000 9.66 7.29 36.49 2.75
810 841 3.559657 GATCCGACGGCCCAGATCG 62.560 68.421 9.66 1.33 35.62 3.69
813 844 4.592192 CGACGGCCCAGATCGCAT 62.592 66.667 0.00 0.00 0.00 4.73
814 845 2.663188 GACGGCCCAGATCGCATC 60.663 66.667 0.00 0.00 0.00 3.91
815 846 3.445518 GACGGCCCAGATCGCATCA 62.446 63.158 0.00 0.00 0.00 3.07
816 847 2.203056 CGGCCCAGATCGCATCAA 60.203 61.111 0.00 0.00 0.00 2.57
817 848 2.249535 CGGCCCAGATCGCATCAAG 61.250 63.158 0.00 0.00 0.00 3.02
818 849 1.153086 GGCCCAGATCGCATCAAGT 60.153 57.895 0.00 0.00 0.00 3.16
819 850 0.106708 GGCCCAGATCGCATCAAGTA 59.893 55.000 0.00 0.00 0.00 2.24
820 851 1.506493 GCCCAGATCGCATCAAGTAG 58.494 55.000 0.00 0.00 0.00 2.57
821 852 1.506493 CCCAGATCGCATCAAGTAGC 58.494 55.000 0.00 0.00 0.00 3.58
822 853 1.506493 CCAGATCGCATCAAGTAGCC 58.494 55.000 0.00 0.00 0.00 3.93
823 854 1.202568 CCAGATCGCATCAAGTAGCCA 60.203 52.381 0.00 0.00 0.00 4.75
824 855 2.133553 CAGATCGCATCAAGTAGCCAG 58.866 52.381 0.00 0.00 0.00 4.85
825 856 2.034878 AGATCGCATCAAGTAGCCAGA 58.965 47.619 0.00 0.00 0.00 3.86
826 857 2.632028 AGATCGCATCAAGTAGCCAGAT 59.368 45.455 0.00 0.00 0.00 2.90
827 858 2.515926 TCGCATCAAGTAGCCAGATC 57.484 50.000 0.00 0.00 0.00 2.75
828 859 1.069204 TCGCATCAAGTAGCCAGATCC 59.931 52.381 0.00 0.00 0.00 3.36
829 860 1.202568 CGCATCAAGTAGCCAGATCCA 60.203 52.381 0.00 0.00 0.00 3.41
830 861 2.742856 CGCATCAAGTAGCCAGATCCAA 60.743 50.000 0.00 0.00 0.00 3.53
831 862 2.615912 GCATCAAGTAGCCAGATCCAAC 59.384 50.000 0.00 0.00 0.00 3.77
832 863 2.672961 TCAAGTAGCCAGATCCAACG 57.327 50.000 0.00 0.00 0.00 4.10
833 864 1.207089 TCAAGTAGCCAGATCCAACGG 59.793 52.381 0.00 0.00 0.00 4.44
834 865 0.107654 AAGTAGCCAGATCCAACGGC 60.108 55.000 5.19 5.19 46.62 5.68
837 868 2.825836 GCCAGATCCAACGGCCAG 60.826 66.667 2.24 0.00 40.07 4.85
838 869 2.989639 CCAGATCCAACGGCCAGA 59.010 61.111 2.24 0.00 0.00 3.86
839 870 1.299648 CCAGATCCAACGGCCAGAA 59.700 57.895 2.24 0.00 0.00 3.02
840 871 0.322456 CCAGATCCAACGGCCAGAAA 60.322 55.000 2.24 0.00 0.00 2.52
841 872 1.683011 CCAGATCCAACGGCCAGAAAT 60.683 52.381 2.24 0.00 0.00 2.17
842 873 1.672881 CAGATCCAACGGCCAGAAATC 59.327 52.381 2.24 0.00 0.00 2.17
843 874 1.025041 GATCCAACGGCCAGAAATCC 58.975 55.000 2.24 0.00 0.00 3.01
844 875 0.331278 ATCCAACGGCCAGAAATCCA 59.669 50.000 2.24 0.00 0.00 3.41
845 876 0.111446 TCCAACGGCCAGAAATCCAA 59.889 50.000 2.24 0.00 0.00 3.53
846 877 0.965439 CCAACGGCCAGAAATCCAAA 59.035 50.000 2.24 0.00 0.00 3.28
847 878 1.550072 CCAACGGCCAGAAATCCAAAT 59.450 47.619 2.24 0.00 0.00 2.32
848 879 2.417243 CCAACGGCCAGAAATCCAAATC 60.417 50.000 2.24 0.00 0.00 2.17
849 880 1.094785 ACGGCCAGAAATCCAAATCG 58.905 50.000 2.24 0.00 0.00 3.34
850 881 0.248621 CGGCCAGAAATCCAAATCGC 60.249 55.000 2.24 0.00 0.00 4.58
851 882 1.106285 GGCCAGAAATCCAAATCGCT 58.894 50.000 0.00 0.00 0.00 4.93
852 883 1.202336 GGCCAGAAATCCAAATCGCTG 60.202 52.381 0.00 0.00 0.00 5.18
853 884 1.745087 GCCAGAAATCCAAATCGCTGA 59.255 47.619 0.00 0.00 0.00 4.26
854 885 2.223433 GCCAGAAATCCAAATCGCTGAG 60.223 50.000 0.00 0.00 0.00 3.35
855 886 2.357009 CCAGAAATCCAAATCGCTGAGG 59.643 50.000 0.00 0.00 0.00 3.86
856 887 3.273434 CAGAAATCCAAATCGCTGAGGA 58.727 45.455 0.00 0.00 34.12 3.71
857 888 3.311871 CAGAAATCCAAATCGCTGAGGAG 59.688 47.826 0.00 0.00 32.91 3.69
858 889 2.338577 AATCCAAATCGCTGAGGAGG 57.661 50.000 0.00 0.00 32.91 4.30
859 890 0.179034 ATCCAAATCGCTGAGGAGGC 60.179 55.000 0.00 0.00 32.91 4.70
860 891 1.222936 CCAAATCGCTGAGGAGGCT 59.777 57.895 0.00 0.00 0.00 4.58
861 892 0.393537 CCAAATCGCTGAGGAGGCTT 60.394 55.000 0.00 0.00 0.00 4.35
862 893 0.731417 CAAATCGCTGAGGAGGCTTG 59.269 55.000 0.00 0.00 0.00 4.01
863 894 0.393537 AAATCGCTGAGGAGGCTTGG 60.394 55.000 0.00 0.00 0.00 3.61
864 895 2.262774 AATCGCTGAGGAGGCTTGGG 62.263 60.000 0.00 0.00 0.00 4.12
865 896 4.479993 CGCTGAGGAGGCTTGGGG 62.480 72.222 0.00 0.00 0.00 4.96
866 897 4.811364 GCTGAGGAGGCTTGGGGC 62.811 72.222 0.00 0.00 40.90 5.80
867 898 3.333219 CTGAGGAGGCTTGGGGCA 61.333 66.667 0.00 0.00 44.01 5.36
868 899 2.858476 TGAGGAGGCTTGGGGCAA 60.858 61.111 0.00 0.00 44.01 4.52
869 900 2.361737 GAGGAGGCTTGGGGCAAC 60.362 66.667 0.00 0.00 44.01 4.17
885 916 4.230314 GGCAACCTTCTTCTCTTGTTTC 57.770 45.455 0.00 0.00 0.00 2.78
886 917 3.885901 GGCAACCTTCTTCTCTTGTTTCT 59.114 43.478 0.00 0.00 0.00 2.52
887 918 4.261363 GGCAACCTTCTTCTCTTGTTTCTG 60.261 45.833 0.00 0.00 0.00 3.02
888 919 4.261363 GCAACCTTCTTCTCTTGTTTCTGG 60.261 45.833 0.00 0.00 0.00 3.86
889 920 5.126067 CAACCTTCTTCTCTTGTTTCTGGA 58.874 41.667 0.00 0.00 0.00 3.86
890 921 5.574970 ACCTTCTTCTCTTGTTTCTGGAT 57.425 39.130 0.00 0.00 0.00 3.41
891 922 6.688073 ACCTTCTTCTCTTGTTTCTGGATA 57.312 37.500 0.00 0.00 0.00 2.59
892 923 6.706295 ACCTTCTTCTCTTGTTTCTGGATAG 58.294 40.000 0.00 0.00 0.00 2.08
893 924 6.112058 CCTTCTTCTCTTGTTTCTGGATAGG 58.888 44.000 0.00 0.00 0.00 2.57
894 925 6.070538 CCTTCTTCTCTTGTTTCTGGATAGGA 60.071 42.308 0.00 0.00 0.00 2.94
895 926 7.365473 CCTTCTTCTCTTGTTTCTGGATAGGAT 60.365 40.741 0.00 0.00 0.00 3.24
896 927 8.609617 TTCTTCTCTTGTTTCTGGATAGGATA 57.390 34.615 0.00 0.00 0.00 2.59
897 928 8.789767 TCTTCTCTTGTTTCTGGATAGGATAT 57.210 34.615 0.00 0.00 0.00 1.63
906 937 4.840271 TCTGGATAGGATATGCATGCTTG 58.160 43.478 20.33 0.00 34.27 4.01
910 941 2.359981 AGGATATGCATGCTTGTGCT 57.640 45.000 20.33 18.01 45.27 4.40
957 991 1.290955 CGGACGGAGCACTTAACCA 59.709 57.895 0.00 0.00 0.00 3.67
1041 1075 2.928396 ACCCGACCCCAACTCCTG 60.928 66.667 0.00 0.00 0.00 3.86
1267 1317 2.126424 GAGCTTCTCGCCGTCGTT 60.126 61.111 0.00 0.00 40.39 3.85
1282 1332 2.346365 GTTTTCGGGCTCCTCGGT 59.654 61.111 0.00 0.00 0.00 4.69
1417 1467 3.522731 ATCCTCGCGCGCTTCTCT 61.523 61.111 30.48 8.08 0.00 3.10
1714 1764 1.732917 CCTAGCTGACTCAGAGCCG 59.267 63.158 10.45 0.00 37.12 5.52
1837 1887 1.068895 CTCAAGATCATCCGCTGCTCT 59.931 52.381 0.00 0.00 31.68 4.09
2056 2106 2.380941 CATGTTGATGGATGGAAGGCA 58.619 47.619 0.00 0.00 0.00 4.75
2488 2538 1.345741 AGTGTGGATGAGAGTGGTGTG 59.654 52.381 0.00 0.00 0.00 3.82
2649 2778 0.317160 TCCATGTTTCGCAGACGTCT 59.683 50.000 13.58 13.58 41.18 4.18
3046 3180 9.790344 AAGGACTAGAAATAATGATGATTGGAG 57.210 33.333 0.00 0.00 0.00 3.86
3319 3504 3.003275 TCGTTCAGCATGGAAAAACTGTC 59.997 43.478 0.00 0.00 36.16 3.51
3332 3517 7.010160 TGGAAAAACTGTCCTTAGATGGAATT 58.990 34.615 0.00 0.00 37.93 2.17
3369 3554 2.922740 ACACGAGTTTTGAAGGCCTA 57.077 45.000 5.16 0.00 0.00 3.93
3376 3561 1.135402 GTTTTGAAGGCCTATGGTGCG 60.135 52.381 5.16 0.00 0.00 5.34
3448 3633 0.693049 GAGTTGGCTTCCCTGGAGAA 59.307 55.000 0.00 0.00 0.00 2.87
3528 3726 1.488812 ACTTGTGCTTCACTGGTGGTA 59.511 47.619 0.70 0.00 35.11 3.25
3565 3830 7.012704 GCTATTGGATGAGAAGCATTTAAGTGA 59.987 37.037 1.56 0.00 37.34 3.41
3587 3852 8.299570 AGTGAGTTATCTTTTATTTGGTGCAAG 58.700 33.333 0.00 0.00 0.00 4.01
3616 3881 6.115446 TGTTTCTGTTCTGACTTCTGTTCAT 58.885 36.000 0.00 0.00 0.00 2.57
3710 3975 7.340232 TGCATACTCTTTAAGATCATGCCTTTT 59.660 33.333 24.92 0.00 37.38 2.27
3814 4082 4.717280 TCAACCTAGAATTTCTCCCCTCTC 59.283 45.833 1.27 0.00 0.00 3.20
3837 4105 1.953686 TGGTTTGCTAGTCCTTTGTGC 59.046 47.619 0.00 0.00 0.00 4.57
3945 4213 2.618442 GAAGCATTCCTCCTCTCCAG 57.382 55.000 0.00 0.00 39.83 3.86
3952 4220 1.769026 TCCTCCTCTCCAGTGATTCG 58.231 55.000 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.640967 AGGTCTGCCTAATTTGTTTTGCA 59.359 39.130 0.00 0.00 44.90 4.08
59 60 2.614229 GGAGACACTGCTTCCTCTTTCC 60.614 54.545 0.00 0.00 0.00 3.13
126 127 1.758514 TCCAGATCACCGAGGAGCC 60.759 63.158 0.00 0.00 0.00 4.70
192 193 1.075970 TCCTCCTCCCCTCATCACG 60.076 63.158 0.00 0.00 0.00 4.35
259 260 1.218047 GCCTCATCCACAGCGTGTA 59.782 57.895 7.68 0.00 0.00 2.90
266 267 2.692824 CCCATGGGCCTCATCCACA 61.693 63.158 20.41 0.00 37.08 4.17
281 282 1.292223 GTGAGCAAGACGTAGCCCA 59.708 57.895 0.00 0.00 0.00 5.36
445 446 4.939368 CCCACCAACCACGGCGAA 62.939 66.667 16.62 0.00 0.00 4.70
466 467 3.781307 CATCCTTCCCGTCCGCCA 61.781 66.667 0.00 0.00 0.00 5.69
476 507 2.409870 CCGCTGCCAACCATCCTTC 61.410 63.158 0.00 0.00 0.00 3.46
514 545 3.122971 TCGAGACGACGACGCCAT 61.123 61.111 7.30 0.00 43.96 4.40
523 554 1.819903 TCTCTCTCTCTGTCGAGACGA 59.180 52.381 0.00 0.00 41.26 4.20
524 555 1.924524 GTCTCTCTCTCTGTCGAGACG 59.075 57.143 0.00 0.00 41.80 4.18
525 556 1.924524 CGTCTCTCTCTCTGTCGAGAC 59.075 57.143 7.92 7.92 45.43 3.36
526 557 1.546923 ACGTCTCTCTCTCTGTCGAGA 59.453 52.381 0.00 0.00 43.82 4.04
527 558 2.004583 ACGTCTCTCTCTCTGTCGAG 57.995 55.000 0.00 0.00 38.67 4.04
528 559 3.449632 CATACGTCTCTCTCTCTGTCGA 58.550 50.000 0.00 0.00 0.00 4.20
529 560 2.542178 CCATACGTCTCTCTCTCTGTCG 59.458 54.545 0.00 0.00 0.00 4.35
530 561 2.875933 CCCATACGTCTCTCTCTCTGTC 59.124 54.545 0.00 0.00 0.00 3.51
531 562 2.506231 TCCCATACGTCTCTCTCTCTGT 59.494 50.000 0.00 0.00 0.00 3.41
532 563 3.138304 CTCCCATACGTCTCTCTCTCTG 58.862 54.545 0.00 0.00 0.00 3.35
533 564 3.042682 TCTCCCATACGTCTCTCTCTCT 58.957 50.000 0.00 0.00 0.00 3.10
534 565 3.070446 TCTCTCCCATACGTCTCTCTCTC 59.930 52.174 0.00 0.00 0.00 3.20
535 566 3.042682 TCTCTCCCATACGTCTCTCTCT 58.957 50.000 0.00 0.00 0.00 3.10
536 567 3.478857 TCTCTCCCATACGTCTCTCTC 57.521 52.381 0.00 0.00 0.00 3.20
537 568 3.935818 TTCTCTCCCATACGTCTCTCT 57.064 47.619 0.00 0.00 0.00 3.10
538 569 4.200874 TCTTTCTCTCCCATACGTCTCTC 58.799 47.826 0.00 0.00 0.00 3.20
539 570 4.204012 CTCTTTCTCTCCCATACGTCTCT 58.796 47.826 0.00 0.00 0.00 3.10
540 571 3.316868 CCTCTTTCTCTCCCATACGTCTC 59.683 52.174 0.00 0.00 0.00 3.36
541 572 3.292460 CCTCTTTCTCTCCCATACGTCT 58.708 50.000 0.00 0.00 0.00 4.18
542 573 3.025262 ACCTCTTTCTCTCCCATACGTC 58.975 50.000 0.00 0.00 0.00 4.34
543 574 2.761208 CACCTCTTTCTCTCCCATACGT 59.239 50.000 0.00 0.00 0.00 3.57
544 575 2.101582 CCACCTCTTTCTCTCCCATACG 59.898 54.545 0.00 0.00 0.00 3.06
545 576 2.436173 CCCACCTCTTTCTCTCCCATAC 59.564 54.545 0.00 0.00 0.00 2.39
546 577 2.629639 CCCCACCTCTTTCTCTCCCATA 60.630 54.545 0.00 0.00 0.00 2.74
547 578 1.589414 CCCACCTCTTTCTCTCCCAT 58.411 55.000 0.00 0.00 0.00 4.00
548 579 0.547712 CCCCACCTCTTTCTCTCCCA 60.548 60.000 0.00 0.00 0.00 4.37
549 580 0.252742 TCCCCACCTCTTTCTCTCCC 60.253 60.000 0.00 0.00 0.00 4.30
550 581 1.199615 CTCCCCACCTCTTTCTCTCC 58.800 60.000 0.00 0.00 0.00 3.71
551 582 2.107366 CTCTCCCCACCTCTTTCTCTC 58.893 57.143 0.00 0.00 0.00 3.20
552 583 1.719378 TCTCTCCCCACCTCTTTCTCT 59.281 52.381 0.00 0.00 0.00 3.10
553 584 2.107366 CTCTCTCCCCACCTCTTTCTC 58.893 57.143 0.00 0.00 0.00 2.87
554 585 1.719378 TCTCTCTCCCCACCTCTTTCT 59.281 52.381 0.00 0.00 0.00 2.52
555 586 2.107366 CTCTCTCTCCCCACCTCTTTC 58.893 57.143 0.00 0.00 0.00 2.62
556 587 1.719378 TCTCTCTCTCCCCACCTCTTT 59.281 52.381 0.00 0.00 0.00 2.52
557 588 1.287739 CTCTCTCTCTCCCCACCTCTT 59.712 57.143 0.00 0.00 0.00 2.85
558 589 0.926293 CTCTCTCTCTCCCCACCTCT 59.074 60.000 0.00 0.00 0.00 3.69
559 590 0.106217 CCTCTCTCTCTCCCCACCTC 60.106 65.000 0.00 0.00 0.00 3.85
560 591 0.853586 ACCTCTCTCTCTCCCCACCT 60.854 60.000 0.00 0.00 0.00 4.00
561 592 0.686112 CACCTCTCTCTCTCCCCACC 60.686 65.000 0.00 0.00 0.00 4.61
562 593 0.040499 ACACCTCTCTCTCTCCCCAC 59.960 60.000 0.00 0.00 0.00 4.61
563 594 0.040351 CACACCTCTCTCTCTCCCCA 59.960 60.000 0.00 0.00 0.00 4.96
564 595 0.686112 CCACACCTCTCTCTCTCCCC 60.686 65.000 0.00 0.00 0.00 4.81
565 596 0.686112 CCCACACCTCTCTCTCTCCC 60.686 65.000 0.00 0.00 0.00 4.30
566 597 0.333312 TCCCACACCTCTCTCTCTCC 59.667 60.000 0.00 0.00 0.00 3.71
567 598 1.283613 TCTCCCACACCTCTCTCTCTC 59.716 57.143 0.00 0.00 0.00 3.20
568 599 1.284785 CTCTCCCACACCTCTCTCTCT 59.715 57.143 0.00 0.00 0.00 3.10
569 600 1.283613 TCTCTCCCACACCTCTCTCTC 59.716 57.143 0.00 0.00 0.00 3.20
570 601 1.284785 CTCTCTCCCACACCTCTCTCT 59.715 57.143 0.00 0.00 0.00 3.10
571 602 1.283613 TCTCTCTCCCACACCTCTCTC 59.716 57.143 0.00 0.00 0.00 3.20
572 603 1.284785 CTCTCTCTCCCACACCTCTCT 59.715 57.143 0.00 0.00 0.00 3.10
573 604 1.283613 TCTCTCTCTCCCACACCTCTC 59.716 57.143 0.00 0.00 0.00 3.20
574 605 1.284785 CTCTCTCTCTCCCACACCTCT 59.715 57.143 0.00 0.00 0.00 3.69
575 606 1.684869 CCTCTCTCTCTCCCACACCTC 60.685 61.905 0.00 0.00 0.00 3.85
576 607 0.334676 CCTCTCTCTCTCCCACACCT 59.665 60.000 0.00 0.00 0.00 4.00
577 608 0.040499 ACCTCTCTCTCTCCCACACC 59.960 60.000 0.00 0.00 0.00 4.16
578 609 1.181786 CACCTCTCTCTCTCCCACAC 58.818 60.000 0.00 0.00 0.00 3.82
579 610 0.613292 GCACCTCTCTCTCTCCCACA 60.613 60.000 0.00 0.00 0.00 4.17
580 611 1.662438 CGCACCTCTCTCTCTCCCAC 61.662 65.000 0.00 0.00 0.00 4.61
581 612 1.379176 CGCACCTCTCTCTCTCCCA 60.379 63.158 0.00 0.00 0.00 4.37
582 613 2.124693 CCGCACCTCTCTCTCTCCC 61.125 68.421 0.00 0.00 0.00 4.30
583 614 2.781158 GCCGCACCTCTCTCTCTCC 61.781 68.421 0.00 0.00 0.00 3.71
584 615 2.804856 GCCGCACCTCTCTCTCTC 59.195 66.667 0.00 0.00 0.00 3.20
585 616 3.137459 CGCCGCACCTCTCTCTCT 61.137 66.667 0.00 0.00 0.00 3.10
586 617 4.200283 CCGCCGCACCTCTCTCTC 62.200 72.222 0.00 0.00 0.00 3.20
603 634 4.779733 TCCCCTCTCCCGCACTCC 62.780 72.222 0.00 0.00 0.00 3.85
604 635 3.151022 CTCCCCTCTCCCGCACTC 61.151 72.222 0.00 0.00 0.00 3.51
605 636 4.787280 CCTCCCCTCTCCCGCACT 62.787 72.222 0.00 0.00 0.00 4.40
606 637 4.779733 TCCTCCCCTCTCCCGCAC 62.780 72.222 0.00 0.00 0.00 5.34
607 638 4.465446 CTCCTCCCCTCTCCCGCA 62.465 72.222 0.00 0.00 0.00 5.69
610 641 2.380571 CTAGCCTCCTCCCCTCTCCC 62.381 70.000 0.00 0.00 0.00 4.30
611 642 1.155155 CTAGCCTCCTCCCCTCTCC 59.845 68.421 0.00 0.00 0.00 3.71
612 643 1.155155 CCTAGCCTCCTCCCCTCTC 59.845 68.421 0.00 0.00 0.00 3.20
613 644 1.627460 ACCTAGCCTCCTCCCCTCT 60.627 63.158 0.00 0.00 0.00 3.69
614 645 1.152419 GACCTAGCCTCCTCCCCTC 60.152 68.421 0.00 0.00 0.00 4.30
615 646 1.307976 ATGACCTAGCCTCCTCCCCT 61.308 60.000 0.00 0.00 0.00 4.79
616 647 0.834261 GATGACCTAGCCTCCTCCCC 60.834 65.000 0.00 0.00 0.00 4.81
617 648 0.189822 AGATGACCTAGCCTCCTCCC 59.810 60.000 0.00 0.00 0.00 4.30
618 649 1.627864 GAGATGACCTAGCCTCCTCC 58.372 60.000 0.00 0.00 0.00 4.30
619 650 1.133325 TGGAGATGACCTAGCCTCCTC 60.133 57.143 0.00 0.00 44.13 3.71
620 651 0.937441 TGGAGATGACCTAGCCTCCT 59.063 55.000 0.00 0.00 44.13 3.69
621 652 2.022718 ATGGAGATGACCTAGCCTCC 57.977 55.000 0.00 0.00 44.08 4.30
622 653 2.038295 CCAATGGAGATGACCTAGCCTC 59.962 54.545 0.00 0.00 0.00 4.70
623 654 2.053244 CCAATGGAGATGACCTAGCCT 58.947 52.381 0.00 0.00 0.00 4.58
624 655 1.072965 CCCAATGGAGATGACCTAGCC 59.927 57.143 0.00 0.00 0.00 3.93
625 656 1.072965 CCCCAATGGAGATGACCTAGC 59.927 57.143 0.00 0.00 35.39 3.42
626 657 1.072965 GCCCCAATGGAGATGACCTAG 59.927 57.143 0.00 0.00 35.39 3.02
627 658 1.140312 GCCCCAATGGAGATGACCTA 58.860 55.000 0.00 0.00 35.39 3.08
628 659 0.625683 AGCCCCAATGGAGATGACCT 60.626 55.000 0.00 0.00 35.39 3.85
629 660 0.466922 CAGCCCCAATGGAGATGACC 60.467 60.000 0.00 0.00 35.39 4.02
630 661 0.466922 CCAGCCCCAATGGAGATGAC 60.467 60.000 0.00 0.00 40.51 3.06
631 662 0.920763 ACCAGCCCCAATGGAGATGA 60.921 55.000 0.00 0.00 40.51 2.92
632 663 0.466922 GACCAGCCCCAATGGAGATG 60.467 60.000 0.00 0.00 40.51 2.90
633 664 0.625683 AGACCAGCCCCAATGGAGAT 60.626 55.000 0.00 0.00 40.51 2.75
634 665 1.229951 AGACCAGCCCCAATGGAGA 60.230 57.895 0.00 0.00 40.51 3.71
635 666 1.077212 CAGACCAGCCCCAATGGAG 60.077 63.158 0.00 0.00 40.51 3.86
636 667 1.434513 AACAGACCAGCCCCAATGGA 61.435 55.000 0.00 0.00 40.51 3.41
637 668 0.542702 AAACAGACCAGCCCCAATGG 60.543 55.000 0.00 0.00 43.87 3.16
638 669 1.341080 AAAACAGACCAGCCCCAATG 58.659 50.000 0.00 0.00 0.00 2.82
639 670 2.990740 TAAAACAGACCAGCCCCAAT 57.009 45.000 0.00 0.00 0.00 3.16
640 671 2.990740 ATAAAACAGACCAGCCCCAA 57.009 45.000 0.00 0.00 0.00 4.12
641 672 2.025699 GGTATAAAACAGACCAGCCCCA 60.026 50.000 0.00 0.00 38.49 4.96
642 673 2.651455 GGTATAAAACAGACCAGCCCC 58.349 52.381 0.00 0.00 38.49 5.80
643 674 2.241430 AGGGTATAAAACAGACCAGCCC 59.759 50.000 0.00 0.00 40.58 5.19
644 675 3.279434 CAGGGTATAAAACAGACCAGCC 58.721 50.000 0.00 0.00 40.58 4.85
645 676 3.279434 CCAGGGTATAAAACAGACCAGC 58.721 50.000 0.00 0.00 40.58 4.85
646 677 3.265995 ACCCAGGGTATAAAACAGACCAG 59.734 47.826 10.48 0.00 40.58 4.00
647 678 3.009695 CACCCAGGGTATAAAACAGACCA 59.990 47.826 12.21 0.00 40.58 4.02
648 679 3.617284 CACCCAGGGTATAAAACAGACC 58.383 50.000 12.21 0.00 37.84 3.85
649 680 3.617284 CCACCCAGGGTATAAAACAGAC 58.383 50.000 12.21 0.00 32.11 3.51
662 693 0.037590 TTCGTCATTTCCCACCCAGG 59.962 55.000 0.00 0.00 37.03 4.45
663 694 1.904287 TTTCGTCATTTCCCACCCAG 58.096 50.000 0.00 0.00 0.00 4.45
664 695 2.366640 TTTTCGTCATTTCCCACCCA 57.633 45.000 0.00 0.00 0.00 4.51
665 696 2.673893 GCATTTTCGTCATTTCCCACCC 60.674 50.000 0.00 0.00 0.00 4.61
666 697 2.606108 GCATTTTCGTCATTTCCCACC 58.394 47.619 0.00 0.00 0.00 4.61
667 698 2.606108 GGCATTTTCGTCATTTCCCAC 58.394 47.619 0.00 0.00 0.00 4.61
668 699 1.548269 GGGCATTTTCGTCATTTCCCA 59.452 47.619 0.00 0.00 32.89 4.37
669 700 1.824852 AGGGCATTTTCGTCATTTCCC 59.175 47.619 0.00 0.00 0.00 3.97
670 701 2.477863 CGAGGGCATTTTCGTCATTTCC 60.478 50.000 0.00 0.00 32.44 3.13
671 702 2.477863 CCGAGGGCATTTTCGTCATTTC 60.478 50.000 0.00 0.00 35.14 2.17
672 703 1.472480 CCGAGGGCATTTTCGTCATTT 59.528 47.619 0.00 0.00 35.14 2.32
673 704 1.094785 CCGAGGGCATTTTCGTCATT 58.905 50.000 0.00 0.00 35.14 2.57
674 705 0.748005 CCCGAGGGCATTTTCGTCAT 60.748 55.000 0.00 0.00 35.14 3.06
675 706 1.376683 CCCGAGGGCATTTTCGTCA 60.377 57.895 0.00 0.00 35.14 4.35
676 707 2.112815 CCCCGAGGGCATTTTCGTC 61.113 63.158 1.76 0.00 35.35 4.20
677 708 2.045340 CCCCGAGGGCATTTTCGT 60.045 61.111 1.76 0.00 35.35 3.85
692 723 2.098443 CACACGTAATTACATTGCCCCC 59.902 50.000 15.67 0.00 0.00 5.40
693 724 2.098443 CCACACGTAATTACATTGCCCC 59.902 50.000 15.67 0.00 0.00 5.80
694 725 2.750712 ACCACACGTAATTACATTGCCC 59.249 45.455 15.67 0.00 0.00 5.36
695 726 3.426963 CCACCACACGTAATTACATTGCC 60.427 47.826 15.67 0.00 0.00 4.52
696 727 3.753842 CCACCACACGTAATTACATTGC 58.246 45.455 15.67 0.00 0.00 3.56
697 728 3.189495 TGCCACCACACGTAATTACATTG 59.811 43.478 15.67 13.13 0.00 2.82
698 729 3.189702 GTGCCACCACACGTAATTACATT 59.810 43.478 15.67 0.00 41.67 2.71
699 730 2.745281 GTGCCACCACACGTAATTACAT 59.255 45.455 15.67 0.00 41.67 2.29
700 731 2.144730 GTGCCACCACACGTAATTACA 58.855 47.619 15.67 0.00 41.67 2.41
701 732 2.886587 GTGCCACCACACGTAATTAC 57.113 50.000 5.47 5.47 41.67 1.89
714 745 2.992607 TTACAACCCGTCCGTGCCAC 62.993 60.000 0.00 0.00 0.00 5.01
715 746 2.804912 TTACAACCCGTCCGTGCCA 61.805 57.895 0.00 0.00 0.00 4.92
716 747 2.030862 TTACAACCCGTCCGTGCC 59.969 61.111 0.00 0.00 0.00 5.01
717 748 0.038343 TAGTTACAACCCGTCCGTGC 60.038 55.000 0.00 0.00 0.00 5.34
718 749 2.660189 ATAGTTACAACCCGTCCGTG 57.340 50.000 0.00 0.00 0.00 4.94
719 750 2.562298 TGAATAGTTACAACCCGTCCGT 59.438 45.455 0.00 0.00 0.00 4.69
720 751 3.235157 TGAATAGTTACAACCCGTCCG 57.765 47.619 0.00 0.00 0.00 4.79
721 752 4.201881 GCAATGAATAGTTACAACCCGTCC 60.202 45.833 0.00 0.00 0.00 4.79
722 753 4.634443 AGCAATGAATAGTTACAACCCGTC 59.366 41.667 0.00 0.00 0.00 4.79
723 754 4.585879 AGCAATGAATAGTTACAACCCGT 58.414 39.130 0.00 0.00 0.00 5.28
724 755 5.583061 TGTAGCAATGAATAGTTACAACCCG 59.417 40.000 0.00 0.00 30.21 5.28
725 756 6.598064 ACTGTAGCAATGAATAGTTACAACCC 59.402 38.462 0.00 0.00 32.37 4.11
726 757 7.611213 ACTGTAGCAATGAATAGTTACAACC 57.389 36.000 0.00 0.00 32.37 3.77
727 758 7.481798 GCAACTGTAGCAATGAATAGTTACAAC 59.518 37.037 0.00 0.00 32.37 3.32
728 759 7.361713 GGCAACTGTAGCAATGAATAGTTACAA 60.362 37.037 0.00 0.00 32.37 2.41
729 760 6.093495 GGCAACTGTAGCAATGAATAGTTACA 59.907 38.462 0.00 0.00 31.95 2.41
730 761 6.458342 GGGCAACTGTAGCAATGAATAGTTAC 60.458 42.308 0.00 0.00 0.00 2.50
731 762 5.588648 GGGCAACTGTAGCAATGAATAGTTA 59.411 40.000 0.00 0.00 0.00 2.24
732 763 4.399303 GGGCAACTGTAGCAATGAATAGTT 59.601 41.667 0.00 0.00 0.00 2.24
733 764 3.947834 GGGCAACTGTAGCAATGAATAGT 59.052 43.478 0.00 0.00 0.00 2.12
734 765 3.316308 GGGGCAACTGTAGCAATGAATAG 59.684 47.826 0.00 0.00 0.00 1.73
735 766 3.053693 AGGGGCAACTGTAGCAATGAATA 60.054 43.478 0.00 0.00 0.00 1.75
736 767 2.102578 GGGGCAACTGTAGCAATGAAT 58.897 47.619 0.00 0.00 0.00 2.57
737 768 1.075374 AGGGGCAACTGTAGCAATGAA 59.925 47.619 0.00 0.00 0.00 2.57
738 769 0.698238 AGGGGCAACTGTAGCAATGA 59.302 50.000 0.00 0.00 0.00 2.57
739 770 1.098050 GAGGGGCAACTGTAGCAATG 58.902 55.000 0.00 0.00 0.00 2.82
740 771 0.995024 AGAGGGGCAACTGTAGCAAT 59.005 50.000 0.00 0.00 0.00 3.56
741 772 0.324943 GAGAGGGGCAACTGTAGCAA 59.675 55.000 0.00 0.00 0.00 3.91
742 773 1.553690 GGAGAGGGGCAACTGTAGCA 61.554 60.000 0.00 0.00 0.00 3.49
743 774 1.222113 GGAGAGGGGCAACTGTAGC 59.778 63.158 0.00 0.00 0.00 3.58
744 775 0.970937 TCGGAGAGGGGCAACTGTAG 60.971 60.000 0.00 0.00 0.00 2.74
745 776 0.325296 ATCGGAGAGGGGCAACTGTA 60.325 55.000 0.00 0.00 43.63 2.74
746 777 1.613630 ATCGGAGAGGGGCAACTGT 60.614 57.895 0.00 0.00 43.63 3.55
747 778 1.144936 GATCGGAGAGGGGCAACTG 59.855 63.158 0.00 0.00 43.63 3.16
748 779 2.066999 GGATCGGAGAGGGGCAACT 61.067 63.158 0.00 0.00 43.63 3.16
749 780 2.506472 GGATCGGAGAGGGGCAAC 59.494 66.667 0.00 0.00 43.63 4.17
750 781 3.154473 CGGATCGGAGAGGGGCAA 61.154 66.667 0.00 0.00 43.63 4.52
751 782 4.137615 TCGGATCGGAGAGGGGCA 62.138 66.667 0.00 0.00 43.63 5.36
752 783 3.607661 GTCGGATCGGAGAGGGGC 61.608 72.222 2.75 0.00 43.63 5.80
753 784 3.288290 CGTCGGATCGGAGAGGGG 61.288 72.222 2.75 0.00 43.63 4.79
762 793 4.208686 AGCTTCGCCCGTCGGATC 62.209 66.667 14.39 2.95 39.05 3.36
763 794 4.208686 GAGCTTCGCCCGTCGGAT 62.209 66.667 14.39 0.00 39.05 4.18
765 796 4.856607 GAGAGCTTCGCCCGTCGG 62.857 72.222 3.60 3.60 39.05 4.79
766 797 4.856607 GGAGAGCTTCGCCCGTCG 62.857 72.222 0.00 0.00 40.15 5.12
767 798 3.708220 CTGGAGAGCTTCGCCCGTC 62.708 68.421 0.00 0.00 35.30 4.79
768 799 3.764466 CTGGAGAGCTTCGCCCGT 61.764 66.667 0.00 0.00 35.30 5.28
773 804 3.655810 AAGCCGCTGGAGAGCTTCG 62.656 63.158 0.00 0.00 43.12 3.79
774 805 2.105466 CAAGCCGCTGGAGAGCTTC 61.105 63.158 0.00 0.00 44.76 3.86
776 807 2.308968 GATCAAGCCGCTGGAGAGCT 62.309 60.000 3.32 0.00 43.77 4.09
777 808 1.886777 GATCAAGCCGCTGGAGAGC 60.887 63.158 3.32 0.00 42.37 4.09
778 809 1.227497 GGATCAAGCCGCTGGAGAG 60.227 63.158 3.32 0.00 0.00 3.20
779 810 2.903357 GGATCAAGCCGCTGGAGA 59.097 61.111 3.32 0.00 0.00 3.71
780 811 2.587194 CGGATCAAGCCGCTGGAG 60.587 66.667 3.32 0.00 45.38 3.86
788 819 4.467084 TGGGCCGTCGGATCAAGC 62.467 66.667 17.49 0.00 0.00 4.01
789 820 2.032860 ATCTGGGCCGTCGGATCAAG 62.033 60.000 17.49 9.23 0.00 3.02
790 821 2.028125 GATCTGGGCCGTCGGATCAA 62.028 60.000 17.49 0.00 44.70 2.57
791 822 2.443952 ATCTGGGCCGTCGGATCA 60.444 61.111 17.49 11.01 0.00 2.92
792 823 2.340443 GATCTGGGCCGTCGGATC 59.660 66.667 17.49 13.21 40.85 3.36
793 824 3.606662 CGATCTGGGCCGTCGGAT 61.607 66.667 17.49 3.18 35.61 4.18
796 827 4.592192 ATGCGATCTGGGCCGTCG 62.592 66.667 17.89 17.89 38.34 5.12
797 828 2.663188 GATGCGATCTGGGCCGTC 60.663 66.667 0.00 0.00 0.00 4.79
798 829 2.930385 CTTGATGCGATCTGGGCCGT 62.930 60.000 0.00 0.00 0.00 5.68
799 830 2.203056 TTGATGCGATCTGGGCCG 60.203 61.111 0.00 0.00 0.00 6.13
800 831 0.106708 TACTTGATGCGATCTGGGCC 59.893 55.000 0.00 0.00 0.00 5.80
801 832 1.506493 CTACTTGATGCGATCTGGGC 58.494 55.000 0.00 0.00 0.00 5.36
802 833 1.506493 GCTACTTGATGCGATCTGGG 58.494 55.000 0.00 0.00 0.00 4.45
803 834 1.202568 TGGCTACTTGATGCGATCTGG 60.203 52.381 0.00 0.00 0.00 3.86
804 835 2.133553 CTGGCTACTTGATGCGATCTG 58.866 52.381 0.00 0.00 0.00 2.90
805 836 2.034878 TCTGGCTACTTGATGCGATCT 58.965 47.619 0.00 0.00 0.00 2.75
806 837 2.515926 TCTGGCTACTTGATGCGATC 57.484 50.000 0.00 0.00 0.00 3.69
807 838 2.289320 GGATCTGGCTACTTGATGCGAT 60.289 50.000 0.00 0.00 0.00 4.58
808 839 1.069204 GGATCTGGCTACTTGATGCGA 59.931 52.381 0.00 0.00 0.00 5.10
809 840 1.202568 TGGATCTGGCTACTTGATGCG 60.203 52.381 0.00 0.00 32.42 4.73
810 841 2.615912 GTTGGATCTGGCTACTTGATGC 59.384 50.000 0.00 0.00 0.00 3.91
811 842 2.868583 CGTTGGATCTGGCTACTTGATG 59.131 50.000 0.00 0.00 0.00 3.07
812 843 2.158900 CCGTTGGATCTGGCTACTTGAT 60.159 50.000 0.00 0.00 0.00 2.57
813 844 1.207089 CCGTTGGATCTGGCTACTTGA 59.793 52.381 0.00 0.00 0.00 3.02
814 845 1.656652 CCGTTGGATCTGGCTACTTG 58.343 55.000 0.00 0.00 0.00 3.16
815 846 0.107654 GCCGTTGGATCTGGCTACTT 60.108 55.000 10.29 0.00 45.40 2.24
816 847 1.522569 GCCGTTGGATCTGGCTACT 59.477 57.895 10.29 0.00 45.40 2.57
817 848 4.126524 GCCGTTGGATCTGGCTAC 57.873 61.111 10.29 0.00 45.40 3.58
821 852 0.322456 TTTCTGGCCGTTGGATCTGG 60.322 55.000 0.00 0.00 0.00 3.86
822 853 1.672881 GATTTCTGGCCGTTGGATCTG 59.327 52.381 0.00 0.00 0.00 2.90
823 854 1.408822 GGATTTCTGGCCGTTGGATCT 60.409 52.381 0.00 0.00 0.00 2.75
824 855 1.025041 GGATTTCTGGCCGTTGGATC 58.975 55.000 0.00 0.00 0.00 3.36
825 856 0.331278 TGGATTTCTGGCCGTTGGAT 59.669 50.000 0.00 0.00 0.00 3.41
826 857 0.111446 TTGGATTTCTGGCCGTTGGA 59.889 50.000 0.00 0.00 0.00 3.53
827 858 0.965439 TTTGGATTTCTGGCCGTTGG 59.035 50.000 0.00 0.00 0.00 3.77
828 859 2.731968 CGATTTGGATTTCTGGCCGTTG 60.732 50.000 0.00 0.00 0.00 4.10
829 860 1.472480 CGATTTGGATTTCTGGCCGTT 59.528 47.619 0.00 0.00 0.00 4.44
830 861 1.094785 CGATTTGGATTTCTGGCCGT 58.905 50.000 0.00 0.00 0.00 5.68
831 862 0.248621 GCGATTTGGATTTCTGGCCG 60.249 55.000 0.00 0.00 0.00 6.13
832 863 1.106285 AGCGATTTGGATTTCTGGCC 58.894 50.000 0.00 0.00 0.00 5.36
833 864 1.745087 TCAGCGATTTGGATTTCTGGC 59.255 47.619 0.00 0.00 0.00 4.85
834 865 2.357009 CCTCAGCGATTTGGATTTCTGG 59.643 50.000 0.00 0.00 0.00 3.86
835 866 3.273434 TCCTCAGCGATTTGGATTTCTG 58.727 45.455 0.00 0.00 0.00 3.02
836 867 3.539604 CTCCTCAGCGATTTGGATTTCT 58.460 45.455 0.00 0.00 0.00 2.52
837 868 2.615912 CCTCCTCAGCGATTTGGATTTC 59.384 50.000 0.00 0.00 0.00 2.17
838 869 2.648059 CCTCCTCAGCGATTTGGATTT 58.352 47.619 0.00 0.00 0.00 2.17
839 870 1.748591 GCCTCCTCAGCGATTTGGATT 60.749 52.381 0.00 0.00 0.00 3.01
840 871 0.179034 GCCTCCTCAGCGATTTGGAT 60.179 55.000 0.00 0.00 0.00 3.41
841 872 1.221840 GCCTCCTCAGCGATTTGGA 59.778 57.895 0.00 0.00 0.00 3.53
842 873 0.393537 AAGCCTCCTCAGCGATTTGG 60.394 55.000 0.00 0.00 34.64 3.28
843 874 0.731417 CAAGCCTCCTCAGCGATTTG 59.269 55.000 0.00 0.00 34.64 2.32
844 875 0.393537 CCAAGCCTCCTCAGCGATTT 60.394 55.000 0.00 0.00 34.64 2.17
845 876 1.222936 CCAAGCCTCCTCAGCGATT 59.777 57.895 0.00 0.00 34.64 3.34
846 877 2.739996 CCCAAGCCTCCTCAGCGAT 61.740 63.158 0.00 0.00 34.64 4.58
847 878 3.393970 CCCAAGCCTCCTCAGCGA 61.394 66.667 0.00 0.00 34.64 4.93
848 879 4.479993 CCCCAAGCCTCCTCAGCG 62.480 72.222 0.00 0.00 34.64 5.18
849 880 4.811364 GCCCCAAGCCTCCTCAGC 62.811 72.222 0.00 0.00 34.35 4.26
850 881 2.910737 TTGCCCCAAGCCTCCTCAG 61.911 63.158 0.00 0.00 42.71 3.35
851 882 2.858476 TTGCCCCAAGCCTCCTCA 60.858 61.111 0.00 0.00 42.71 3.86
852 883 2.361737 GTTGCCCCAAGCCTCCTC 60.362 66.667 0.00 0.00 42.71 3.71
853 884 3.984732 GGTTGCCCCAAGCCTCCT 61.985 66.667 0.00 0.00 42.71 3.69
854 885 3.529835 AAGGTTGCCCCAAGCCTCC 62.530 63.158 3.78 0.00 42.01 4.30
855 886 1.979155 GAAGGTTGCCCCAAGCCTC 60.979 63.158 3.78 0.00 42.01 4.70
856 887 2.023760 AAGAAGGTTGCCCCAAGCCT 62.024 55.000 3.78 0.00 42.01 4.58
857 888 1.533994 AAGAAGGTTGCCCCAAGCC 60.534 57.895 3.78 0.00 42.01 4.35
858 889 0.540597 AGAAGAAGGTTGCCCCAAGC 60.541 55.000 0.00 0.00 41.47 4.01
859 890 1.074566 AGAGAAGAAGGTTGCCCCAAG 59.925 52.381 0.00 0.00 34.66 3.61
860 891 1.149101 AGAGAAGAAGGTTGCCCCAA 58.851 50.000 0.00 0.00 34.66 4.12
861 892 1.149101 AAGAGAAGAAGGTTGCCCCA 58.851 50.000 0.00 0.00 34.66 4.96
862 893 1.202940 ACAAGAGAAGAAGGTTGCCCC 60.203 52.381 0.00 0.00 0.00 5.80
863 894 2.278332 ACAAGAGAAGAAGGTTGCCC 57.722 50.000 0.00 0.00 0.00 5.36
864 895 3.885901 AGAAACAAGAGAAGAAGGTTGCC 59.114 43.478 0.00 0.00 0.00 4.52
865 896 4.261363 CCAGAAACAAGAGAAGAAGGTTGC 60.261 45.833 0.00 0.00 0.00 4.17
866 897 5.126067 TCCAGAAACAAGAGAAGAAGGTTG 58.874 41.667 0.00 0.00 0.00 3.77
867 898 5.373812 TCCAGAAACAAGAGAAGAAGGTT 57.626 39.130 0.00 0.00 0.00 3.50
868 899 5.574970 ATCCAGAAACAAGAGAAGAAGGT 57.425 39.130 0.00 0.00 0.00 3.50
869 900 6.070538 TCCTATCCAGAAACAAGAGAAGAAGG 60.071 42.308 0.00 0.00 0.00 3.46
870 901 6.940739 TCCTATCCAGAAACAAGAGAAGAAG 58.059 40.000 0.00 0.00 0.00 2.85
871 902 6.935240 TCCTATCCAGAAACAAGAGAAGAA 57.065 37.500 0.00 0.00 0.00 2.52
872 903 8.646004 CATATCCTATCCAGAAACAAGAGAAGA 58.354 37.037 0.00 0.00 0.00 2.87
873 904 7.387397 GCATATCCTATCCAGAAACAAGAGAAG 59.613 40.741 0.00 0.00 0.00 2.85
874 905 7.147497 TGCATATCCTATCCAGAAACAAGAGAA 60.147 37.037 0.00 0.00 0.00 2.87
875 906 6.327365 TGCATATCCTATCCAGAAACAAGAGA 59.673 38.462 0.00 0.00 0.00 3.10
876 907 6.528321 TGCATATCCTATCCAGAAACAAGAG 58.472 40.000 0.00 0.00 0.00 2.85
877 908 6.499106 TGCATATCCTATCCAGAAACAAGA 57.501 37.500 0.00 0.00 0.00 3.02
878 909 6.349115 GCATGCATATCCTATCCAGAAACAAG 60.349 42.308 14.21 0.00 0.00 3.16
879 910 5.474532 GCATGCATATCCTATCCAGAAACAA 59.525 40.000 14.21 0.00 0.00 2.83
880 911 5.005740 GCATGCATATCCTATCCAGAAACA 58.994 41.667 14.21 0.00 0.00 2.83
881 912 5.251764 AGCATGCATATCCTATCCAGAAAC 58.748 41.667 21.98 0.00 0.00 2.78
882 913 5.509832 AGCATGCATATCCTATCCAGAAA 57.490 39.130 21.98 0.00 0.00 2.52
883 914 5.221986 ACAAGCATGCATATCCTATCCAGAA 60.222 40.000 21.98 0.00 0.00 3.02
884 915 4.287845 ACAAGCATGCATATCCTATCCAGA 59.712 41.667 21.98 0.00 0.00 3.86
885 916 4.395231 CACAAGCATGCATATCCTATCCAG 59.605 45.833 21.98 0.00 0.00 3.86
886 917 4.329392 CACAAGCATGCATATCCTATCCA 58.671 43.478 21.98 0.00 0.00 3.41
887 918 3.128242 GCACAAGCATGCATATCCTATCC 59.872 47.826 21.98 0.00 45.39 2.59
888 919 4.352600 GCACAAGCATGCATATCCTATC 57.647 45.455 21.98 0.00 45.39 2.08
897 928 8.491374 TTTCTCTAGAATAAGCACAAGCATGCA 61.491 37.037 21.98 0.00 39.86 3.96
931 965 3.384532 GCTCCGTCCGGGGTACAA 61.385 66.667 7.54 0.00 38.25 2.41
957 991 3.725490 GGACGCGAGGGTTATTAAATCT 58.275 45.455 15.93 0.00 0.00 2.40
1041 1075 4.570874 GGGGAGGCGGAGGAATGC 62.571 72.222 0.00 0.00 0.00 3.56
1115 1165 4.323477 GCGGTGGTGGTGGTAGCA 62.323 66.667 0.00 0.00 0.00 3.49
1255 1305 2.429571 CCGAAAACGACGGCGAGA 60.430 61.111 22.49 0.00 43.74 4.04
1267 1317 2.660802 GAACCGAGGAGCCCGAAA 59.339 61.111 0.00 0.00 0.00 3.46
1417 1467 2.202878 GCGAGCTTGGATACGGCA 60.203 61.111 2.37 0.00 39.83 5.69
1714 1764 2.022240 GAGGGCTGGAGACGGTGATC 62.022 65.000 0.00 0.00 39.64 2.92
1837 1887 2.132089 GAACCGGGTCCCAATCACCA 62.132 60.000 8.85 0.00 35.35 4.17
2056 2106 1.663695 CACGGTCGCCAATCCTATTT 58.336 50.000 0.00 0.00 0.00 1.40
2488 2538 0.747283 CACTCCCTGCATTCTCCAGC 60.747 60.000 0.00 0.00 0.00 4.85
3106 3282 4.038763 ACCAGCATGCAAAATCATGATAGG 59.961 41.667 21.98 2.80 44.94 2.57
3218 3394 3.936564 AGGCACTTCTCTTCAGAATCAC 58.063 45.455 0.00 0.00 38.02 3.06
3369 3554 0.833287 AATAGAGCTGTCCGCACCAT 59.167 50.000 0.00 0.00 42.61 3.55
3376 3561 1.227674 CGCCCCAATAGAGCTGTCC 60.228 63.158 0.00 0.00 0.00 4.02
3428 3613 1.201429 TCTCCAGGGAAGCCAACTCC 61.201 60.000 0.00 0.00 0.00 3.85
3565 3830 6.991938 TGCTTGCACCAAATAAAAGATAACT 58.008 32.000 0.00 0.00 0.00 2.24
3578 3843 3.573538 ACAGAAACATATGCTTGCACCAA 59.426 39.130 1.58 0.00 0.00 3.67
3587 3852 6.148480 ACAGAAGTCAGAACAGAAACATATGC 59.852 38.462 1.58 0.00 0.00 3.14
3616 3881 8.907885 CGATAACTAGGATCCATGATCAGATAA 58.092 37.037 15.82 0.00 40.50 1.75
3710 3975 7.453393 ACAACTTGATTCTATCCAGTTTCTGA 58.547 34.615 4.05 0.00 40.98 3.27
3814 4082 3.057315 CACAAAGGACTAGCAAACCATGG 60.057 47.826 11.19 11.19 0.00 3.66
3837 4105 0.174845 TCCAACGCGGTATCAGGAAG 59.825 55.000 12.47 0.00 35.57 3.46
3945 4213 2.416547 CAGGTCCATGTCAACGAATCAC 59.583 50.000 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.