Multiple sequence alignment - TraesCS5B01G158700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G158700 chr5B 100.000 9620 0 0 1 9620 292731028 292740647 0.000000e+00 17765
1 TraesCS5B01G158700 chr5B 86.364 154 18 3 3023 3174 66019546 66019394 2.150000e-36 165
2 TraesCS5B01G158700 chr5B 97.468 79 2 0 482 560 292731433 292731511 1.690000e-27 135
3 TraesCS5B01G158700 chr5B 97.468 79 2 0 406 484 292731509 292731587 1.690000e-27 135
4 TraesCS5B01G158700 chr5D 97.971 7296 102 25 867 8152 258639371 258646630 0.000000e+00 12611
5 TraesCS5B01G158700 chr5D 90.641 2169 125 37 6559 8695 15676240 15674118 0.000000e+00 2809
6 TraesCS5B01G158700 chr5D 95.816 1195 34 7 8278 9465 258646633 258647818 0.000000e+00 1916
7 TraesCS5B01G158700 chr5D 91.405 861 41 9 5691 6544 15677157 15676323 0.000000e+00 1149
8 TraesCS5B01G158700 chr5D 91.314 449 24 12 40 484 221142003 221142440 4.970000e-167 599
9 TraesCS5B01G158700 chr5D 94.203 345 14 6 5422 5762 15677500 15677158 1.110000e-143 521
10 TraesCS5B01G158700 chr5D 93.659 205 13 0 482 686 221142362 221142566 3.370000e-79 307
11 TraesCS5B01G158700 chr5D 90.132 152 10 3 680 827 221145301 221145451 9.860000e-45 193
12 TraesCS5B01G158700 chr5D 89.362 94 5 3 5291 5379 15723871 15723778 7.900000e-21 113
13 TraesCS5B01G158700 chr5A 96.274 4241 114 28 896 5121 343449856 343454067 0.000000e+00 6916
14 TraesCS5B01G158700 chr5A 96.733 3459 62 21 5288 8712 343454066 343457507 0.000000e+00 5714
15 TraesCS5B01G158700 chr5A 94.794 2497 50 42 6557 8993 343455366 343457842 0.000000e+00 3818
16 TraesCS5B01G158700 chr5A 94.725 455 14 4 9011 9465 343457974 343458418 0.000000e+00 699
17 TraesCS5B01G158700 chr5A 81.921 177 28 3 3071 3245 491048987 491049161 7.790000e-31 147
18 TraesCS5B01G158700 chr5A 95.745 47 1 1 867 913 343405293 343405338 3.730000e-09 75
19 TraesCS5B01G158700 chrUn 90.641 2169 125 37 6559 8695 67699580 67697458 0.000000e+00 2809
20 TraesCS5B01G158700 chrUn 91.405 861 41 9 5691 6544 67700497 67699663 0.000000e+00 1149
21 TraesCS5B01G158700 chrUn 94.203 345 14 6 5422 5762 67700840 67700498 1.110000e-143 521
22 TraesCS5B01G158700 chr4A 89.652 2155 124 34 6557 8672 586497197 586495103 0.000000e+00 2652
23 TraesCS5B01G158700 chr4A 94.220 1263 50 12 5291 6544 586498521 586497273 0.000000e+00 1906
24 TraesCS5B01G158700 chr4A 80.746 831 112 27 2433 3245 38680070 38679270 1.070000e-168 604
25 TraesCS5B01G158700 chr4A 81.500 200 24 7 3067 3255 566901644 566901447 1.670000e-32 152
26 TraesCS5B01G158700 chr3A 89.379 2175 129 36 6543 8672 670852592 670854709 0.000000e+00 2643
27 TraesCS5B01G158700 chr3A 93.597 859 37 7 5691 6544 670851711 670852556 0.000000e+00 1266
28 TraesCS5B01G158700 chr3A 95.251 358 11 6 5408 5762 670851356 670851710 6.520000e-156 562
29 TraesCS5B01G158700 chr3A 94.656 131 5 1 5291 5419 670849812 670849942 1.640000e-47 202
30 TraesCS5B01G158700 chr7B 93.048 863 37 9 5691 6544 639268031 639267183 0.000000e+00 1240
31 TraesCS5B01G158700 chr7B 94.549 477 19 6 5291 5762 639268506 639268032 0.000000e+00 730
32 TraesCS5B01G158700 chr7B 82.569 654 84 18 2497 3131 610330906 610331548 5.080000e-152 549
33 TraesCS5B01G158700 chr7B 85.526 152 22 0 490 641 693678050 693678201 1.000000e-34 159
34 TraesCS5B01G158700 chr7B 85.526 152 22 0 490 641 693693567 693693718 1.000000e-34 159
35 TraesCS5B01G158700 chr2B 99.040 521 2 2 40 560 174346874 174346357 0.000000e+00 931
36 TraesCS5B01G158700 chr2B 95.011 461 9 6 406 866 174346435 174345989 0.000000e+00 712
37 TraesCS5B01G158700 chr2B 81.110 757 110 19 2509 3240 652852439 652851691 8.380000e-160 575
38 TraesCS5B01G158700 chr2B 98.734 79 1 0 482 560 174346511 174346433 3.620000e-29 141
39 TraesCS5B01G158700 chr2B 97.468 79 2 0 406 484 174346359 174346281 1.690000e-27 135
40 TraesCS5B01G158700 chr2D 84.559 680 86 12 2508 3173 545957053 545956379 0.000000e+00 656
41 TraesCS5B01G158700 chr2D 79.365 252 36 9 3020 3259 470381714 470381961 7.730000e-36 163
42 TraesCS5B01G158700 chr2D 85.135 74 10 1 2926 2998 190573905 190573832 3.730000e-09 75
43 TraesCS5B01G158700 chr1B 89.189 370 33 3 3721 4088 283904425 283904061 1.140000e-123 455
44 TraesCS5B01G158700 chr6D 80.602 299 45 9 2486 2782 65602907 65602620 1.630000e-52 219
45 TraesCS5B01G158700 chr6D 87.179 156 17 3 3091 3245 468812393 468812240 3.570000e-39 174
46 TraesCS5B01G158700 chr6D 82.723 191 29 4 3057 3245 296822367 296822555 5.980000e-37 167
47 TraesCS5B01G158700 chr3D 85.806 155 17 4 3023 3173 303792186 303792339 1.000000e-34 159
48 TraesCS5B01G158700 chr3D 82.955 176 25 5 3073 3245 512220423 512220596 4.650000e-33 154
49 TraesCS5B01G158700 chr3D 83.929 112 17 1 753 863 15200672 15200783 1.320000e-18 106
50 TraesCS5B01G158700 chr1D 79.570 186 25 4 3075 3248 454809546 454809362 4.720000e-23 121
51 TraesCS5B01G158700 chr1A 75.781 256 38 16 2516 2767 420393395 420393630 3.670000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G158700 chr5B 292731028 292740647 9619 False 17765.000000 17765 100.000000 1 9620 1 chr5B.!!$F1 9619
1 TraesCS5B01G158700 chr5D 258639371 258647818 8447 False 7263.500000 12611 96.893500 867 9465 2 chr5D.!!$F2 8598
2 TraesCS5B01G158700 chr5D 15674118 15677500 3382 True 1493.000000 2809 92.083000 5422 8695 3 chr5D.!!$R2 3273
3 TraesCS5B01G158700 chr5D 221142003 221145451 3448 False 366.333333 599 91.701667 40 827 3 chr5D.!!$F1 787
4 TraesCS5B01G158700 chr5A 343449856 343458418 8562 False 4286.750000 6916 95.631500 896 9465 4 chr5A.!!$F3 8569
5 TraesCS5B01G158700 chrUn 67697458 67700840 3382 True 1493.000000 2809 92.083000 5422 8695 3 chrUn.!!$R1 3273
6 TraesCS5B01G158700 chr4A 586495103 586498521 3418 True 2279.000000 2652 91.936000 5291 8672 2 chr4A.!!$R3 3381
7 TraesCS5B01G158700 chr4A 38679270 38680070 800 True 604.000000 604 80.746000 2433 3245 1 chr4A.!!$R1 812
8 TraesCS5B01G158700 chr3A 670849812 670854709 4897 False 1168.250000 2643 93.220750 5291 8672 4 chr3A.!!$F1 3381
9 TraesCS5B01G158700 chr7B 639267183 639268506 1323 True 985.000000 1240 93.798500 5291 6544 2 chr7B.!!$R1 1253
10 TraesCS5B01G158700 chr7B 610330906 610331548 642 False 549.000000 549 82.569000 2497 3131 1 chr7B.!!$F1 634
11 TraesCS5B01G158700 chr2B 652851691 652852439 748 True 575.000000 575 81.110000 2509 3240 1 chr2B.!!$R1 731
12 TraesCS5B01G158700 chr2B 174345989 174346874 885 True 479.750000 931 97.563250 40 866 4 chr2B.!!$R2 826
13 TraesCS5B01G158700 chr2D 545956379 545957053 674 True 656.000000 656 84.559000 2508 3173 1 chr2D.!!$R2 665

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
535 692 0.527817 CCTAGCCAACCATCGTCGTC 60.528 60.000 0.00 0.00 0.00 4.20 F
1138 4046 0.189822 GGCTGACTCCTCCCCTCTAT 59.810 60.000 0.00 0.00 0.00 1.98 F
2484 5400 0.178984 TCCCTATACATCCGCGGTCA 60.179 55.000 27.15 7.11 0.00 4.02 F
3298 6281 2.238395 GTCCCTCATCAGCCTTCTCTTT 59.762 50.000 0.00 0.00 0.00 2.52 F
4030 7013 4.176271 GCACATACTTTGCTTTCCATTCC 58.824 43.478 0.00 0.00 37.00 3.01 F
5264 8248 3.259123 GCATGGGGATATTGGAAATGACC 59.741 47.826 0.00 0.00 0.00 4.02 F
6672 11242 1.262151 GAAACAGCGCTACCGTTTGAA 59.738 47.619 24.00 0.00 33.18 2.69 F
7195 11795 1.368374 TGTAACCTGGCCCTTAAGCT 58.632 50.000 0.00 0.00 0.00 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1716 4631 1.986882 AAAACCTTGTCAGCTCTGGG 58.013 50.000 0.00 0.00 0.00 4.45 R
2524 5440 4.133078 TGTGGTTGCAAATGGGAAAATTC 58.867 39.130 0.00 0.00 0.00 2.17 R
4028 7011 2.640826 AGTCCTTTTACCGGAACATGGA 59.359 45.455 9.46 7.35 31.13 3.41 R
5264 8248 6.095440 CCAGGGTGGAATGTTTTAGAATACTG 59.905 42.308 0.00 0.00 40.96 2.74 R
5948 10441 1.588239 ACCAGCCCATCAAGATCTGA 58.412 50.000 0.00 0.00 38.81 3.27 R
6767 11339 3.371595 CCTCCAAGGGTGTAAGTTATGGG 60.372 52.174 0.00 0.00 0.00 4.00 R
7534 12137 3.354948 ACATGGCAGCTATTGAGAACA 57.645 42.857 0.00 0.00 0.00 3.18 R
8787 13460 1.522668 TGCTGCTAACGCTTCACATT 58.477 45.000 0.00 0.00 36.97 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.980143 AAATAATTATGCGTGCAACTAAAACT 57.020 26.923 0.00 0.00 31.75 2.66
35 36 8.657074 ATGCGTGCAACTAAAACTATTATAGA 57.343 30.769 6.21 0.00 31.75 1.98
36 37 8.657074 TGCGTGCAACTAAAACTATTATAGAT 57.343 30.769 6.21 0.00 31.75 1.98
37 38 8.547894 TGCGTGCAACTAAAACTATTATAGATG 58.452 33.333 6.21 0.00 31.75 2.90
38 39 7.530861 GCGTGCAACTAAAACTATTATAGATGC 59.469 37.037 6.21 7.16 42.42 3.91
125 126 2.017138 TGCGTCAACAACAGAAGACA 57.983 45.000 0.00 0.00 0.00 3.41
481 638 4.796231 CGCGACGAGGACCTTGGG 62.796 72.222 13.62 5.77 0.00 4.12
482 639 4.452733 GCGACGAGGACCTTGGGG 62.453 72.222 13.62 5.42 38.88 4.96
483 640 4.452733 CGACGAGGACCTTGGGGC 62.453 72.222 13.62 0.00 35.63 5.80
484 641 4.097361 GACGAGGACCTTGGGGCC 62.097 72.222 13.62 0.00 35.63 5.80
487 644 3.647771 GAGGACCTTGGGGCCGTT 61.648 66.667 2.42 0.00 35.12 4.44
488 645 3.920093 GAGGACCTTGGGGCCGTTG 62.920 68.421 2.42 0.00 35.12 4.10
489 646 4.280019 GGACCTTGGGGCCGTTGT 62.280 66.667 0.00 0.00 35.63 3.32
490 647 2.983592 GACCTTGGGGCCGTTGTG 60.984 66.667 0.00 0.00 35.63 3.33
491 648 4.596585 ACCTTGGGGCCGTTGTGG 62.597 66.667 0.00 0.00 42.50 4.17
492 649 4.596585 CCTTGGGGCCGTTGTGGT 62.597 66.667 0.00 0.00 41.21 4.16
493 650 3.294493 CTTGGGGCCGTTGTGGTG 61.294 66.667 0.00 0.00 41.21 4.17
494 651 4.904590 TTGGGGCCGTTGTGGTGG 62.905 66.667 0.00 0.00 41.21 4.61
497 654 4.265056 GGGCCGTTGTGGTGGACT 62.265 66.667 0.00 0.00 41.21 3.85
498 655 2.978010 GGCCGTTGTGGTGGACTG 60.978 66.667 0.00 0.00 41.21 3.51
499 656 2.978010 GCCGTTGTGGTGGACTGG 60.978 66.667 0.00 0.00 41.21 4.00
500 657 2.281484 CCGTTGTGGTGGACTGGG 60.281 66.667 0.00 0.00 0.00 4.45
501 658 2.813726 CCGTTGTGGTGGACTGGGA 61.814 63.158 0.00 0.00 0.00 4.37
502 659 1.374947 CGTTGTGGTGGACTGGGAT 59.625 57.895 0.00 0.00 0.00 3.85
503 660 0.955428 CGTTGTGGTGGACTGGGATG 60.955 60.000 0.00 0.00 0.00 3.51
504 661 0.609131 GTTGTGGTGGACTGGGATGG 60.609 60.000 0.00 0.00 0.00 3.51
505 662 1.065410 TTGTGGTGGACTGGGATGGT 61.065 55.000 0.00 0.00 0.00 3.55
506 663 1.002134 GTGGTGGACTGGGATGGTG 60.002 63.158 0.00 0.00 0.00 4.17
507 664 2.230653 TGGTGGACTGGGATGGTGG 61.231 63.158 0.00 0.00 0.00 4.61
508 665 2.231380 GGTGGACTGGGATGGTGGT 61.231 63.158 0.00 0.00 0.00 4.16
509 666 1.002134 GTGGACTGGGATGGTGGTG 60.002 63.158 0.00 0.00 0.00 4.17
510 667 2.230653 TGGACTGGGATGGTGGTGG 61.231 63.158 0.00 0.00 0.00 4.61
511 668 2.231380 GGACTGGGATGGTGGTGGT 61.231 63.158 0.00 0.00 0.00 4.16
512 669 1.002134 GACTGGGATGGTGGTGGTG 60.002 63.158 0.00 0.00 0.00 4.17
513 670 2.361610 CTGGGATGGTGGTGGTGC 60.362 66.667 0.00 0.00 0.00 5.01
514 671 4.343323 TGGGATGGTGGTGGTGCG 62.343 66.667 0.00 0.00 0.00 5.34
520 677 4.778143 GGTGGTGGTGCGGCCTAG 62.778 72.222 0.00 0.00 38.35 3.02
532 689 4.126524 GCCTAGCCAACCATCGTC 57.873 61.111 0.00 0.00 0.00 4.20
533 690 1.883084 GCCTAGCCAACCATCGTCG 60.883 63.158 0.00 0.00 0.00 5.12
534 691 1.515954 CCTAGCCAACCATCGTCGT 59.484 57.895 0.00 0.00 0.00 4.34
535 692 0.527817 CCTAGCCAACCATCGTCGTC 60.528 60.000 0.00 0.00 0.00 4.20
536 693 0.866061 CTAGCCAACCATCGTCGTCG 60.866 60.000 0.00 0.00 38.55 5.12
537 694 1.588824 TAGCCAACCATCGTCGTCGT 61.589 55.000 1.33 0.00 38.33 4.34
538 695 2.726691 GCCAACCATCGTCGTCGTG 61.727 63.158 1.33 0.35 38.33 4.35
539 696 2.092291 CCAACCATCGTCGTCGTGG 61.092 63.158 16.95 16.95 40.89 4.94
540 697 2.431942 AACCATCGTCGTCGTGGC 60.432 61.111 17.91 0.00 39.75 5.01
541 698 4.771356 ACCATCGTCGTCGTGGCG 62.771 66.667 17.91 0.00 39.75 5.69
663 820 0.976073 TGGTAGTGGCTCCTAGTGGC 60.976 60.000 0.00 0.00 0.00 5.01
810 3711 1.933853 GTGATAGAAATCGTGCGGCTT 59.066 47.619 0.00 0.00 34.60 4.35
811 3712 2.351726 GTGATAGAAATCGTGCGGCTTT 59.648 45.455 0.00 0.00 34.60 3.51
841 3742 1.714794 CTCGATCTCGCCAAACAGTT 58.285 50.000 0.00 0.00 39.60 3.16
842 3743 1.391485 CTCGATCTCGCCAAACAGTTG 59.609 52.381 0.00 0.00 39.60 3.16
882 3783 8.870116 AGATTTTAGGAACTTAAAATTGCAGGT 58.130 29.630 13.13 0.00 40.39 4.00
979 3887 2.035155 GCCTAACCAAACCCGCCT 59.965 61.111 0.00 0.00 0.00 5.52
1105 4013 1.430369 CCATCCCAATCTCCCCTCCC 61.430 65.000 0.00 0.00 0.00 4.30
1137 4045 1.621377 GGCTGACTCCTCCCCTCTA 59.379 63.158 0.00 0.00 0.00 2.43
1138 4046 0.189822 GGCTGACTCCTCCCCTCTAT 59.810 60.000 0.00 0.00 0.00 1.98
1139 4047 1.627864 GCTGACTCCTCCCCTCTATC 58.372 60.000 0.00 0.00 0.00 2.08
1140 4048 1.146982 GCTGACTCCTCCCCTCTATCT 59.853 57.143 0.00 0.00 0.00 1.98
1141 4049 2.377193 GCTGACTCCTCCCCTCTATCTA 59.623 54.545 0.00 0.00 0.00 1.98
1170 4078 5.422666 TTCCGCATACTGCATATTTCTTG 57.577 39.130 0.00 0.00 45.36 3.02
1172 4080 3.565482 CCGCATACTGCATATTTCTTGGT 59.435 43.478 0.00 0.00 45.36 3.67
1174 4082 4.512944 CGCATACTGCATATTTCTTGGTCT 59.487 41.667 0.00 0.00 45.36 3.85
1209 4119 7.367159 TGGTTTCGTGGTGTAAATGTAATAG 57.633 36.000 0.00 0.00 0.00 1.73
1210 4120 6.935771 TGGTTTCGTGGTGTAAATGTAATAGT 59.064 34.615 0.00 0.00 0.00 2.12
1211 4121 8.093307 TGGTTTCGTGGTGTAAATGTAATAGTA 58.907 33.333 0.00 0.00 0.00 1.82
1238 4148 1.607801 GGGTGCCTCCTGATTTTGCC 61.608 60.000 0.00 0.00 36.25 4.52
1259 4169 1.140816 GGTAGATTCGGCGCTTGATC 58.859 55.000 7.64 8.29 0.00 2.92
1261 4171 0.318699 TAGATTCGGCGCTTGATCGG 60.319 55.000 7.64 0.00 0.00 4.18
1319 4229 1.301716 GCTCTTTGACGGCCTGACA 60.302 57.895 0.00 0.00 0.00 3.58
1340 4250 4.274950 ACACTATCTGTTCGGGTTTGTTTG 59.725 41.667 0.00 0.00 0.00 2.93
1615 4530 3.759086 CCAACTACAGTAGCTCAGACTGA 59.241 47.826 19.59 4.78 46.01 3.41
1688 4603 9.977762 ACGGTTTTTATTTTACGAGATATGTTC 57.022 29.630 0.00 0.00 0.00 3.18
1947 4863 6.043938 AGAGTTTGTGATAGGGTTCCAAAGTA 59.956 38.462 0.00 0.00 30.93 2.24
1953 4869 7.134162 TGTGATAGGGTTCCAAAGTATACCTA 58.866 38.462 0.00 0.00 34.02 3.08
2015 4931 5.190925 TGTGTAGTCTGGGCTATAAACCAAT 59.809 40.000 0.00 0.00 36.09 3.16
2123 5039 5.888105 ACACAGAATCAGCAATGCTATTTC 58.112 37.500 7.70 13.65 36.40 2.17
2124 5040 5.416639 ACACAGAATCAGCAATGCTATTTCA 59.583 36.000 22.74 3.24 36.40 2.69
2380 5296 6.492087 AGAGTAGAAGAGTAAGTGAGCAAGTT 59.508 38.462 0.00 0.00 0.00 2.66
2484 5400 0.178984 TCCCTATACATCCGCGGTCA 60.179 55.000 27.15 7.11 0.00 4.02
2557 5473 6.097554 CCATTTGCAACCACAAACCCTATATA 59.902 38.462 0.00 0.00 42.01 0.86
2558 5474 7.201992 CCATTTGCAACCACAAACCCTATATAT 60.202 37.037 0.00 0.00 42.01 0.86
2559 5475 6.952773 TTGCAACCACAAACCCTATATATC 57.047 37.500 0.00 0.00 0.00 1.63
3298 6281 2.238395 GTCCCTCATCAGCCTTCTCTTT 59.762 50.000 0.00 0.00 0.00 2.52
4030 7013 4.176271 GCACATACTTTGCTTTCCATTCC 58.824 43.478 0.00 0.00 37.00 3.01
4031 7014 4.321899 GCACATACTTTGCTTTCCATTCCA 60.322 41.667 0.00 0.00 37.00 3.53
4032 7015 5.625197 GCACATACTTTGCTTTCCATTCCAT 60.625 40.000 0.00 0.00 37.00 3.41
5264 8248 3.259123 GCATGGGGATATTGGAAATGACC 59.741 47.826 0.00 0.00 0.00 4.02
5390 8376 7.094890 ACGTGGATCCTACTTAGTACAATATCG 60.095 40.741 14.23 0.00 0.00 2.92
5856 10349 6.265196 TGCTACAAAAAGAAACTGGTCATCAT 59.735 34.615 0.00 0.00 0.00 2.45
5948 10441 9.911788 TCTTCCTCTCTCAAAATATTGCTATTT 57.088 29.630 0.00 0.00 38.84 1.40
6008 10501 5.049612 CCAGAAGATATGTACGAACTCGCTA 60.050 44.000 0.00 0.00 44.43 4.26
6540 11041 7.970384 TCATAAACGTTTGTGGAATGATACTC 58.030 34.615 29.74 0.00 31.23 2.59
6669 11238 1.263217 CAAGAAACAGCGCTACCGTTT 59.737 47.619 20.44 20.44 35.63 3.60
6672 11242 1.262151 GAAACAGCGCTACCGTTTGAA 59.738 47.619 24.00 0.00 33.18 2.69
6767 11339 2.357517 CTCGTGTGGTGGTGAGGC 60.358 66.667 0.00 0.00 0.00 4.70
7195 11795 1.368374 TGTAACCTGGCCCTTAAGCT 58.632 50.000 0.00 0.00 0.00 3.74
7534 12137 1.676384 GCCTGACAGCAGAACTCCT 59.324 57.895 0.00 0.00 45.17 3.69
7919 12522 7.497925 AAAGAACTTTTAGATTCAGAAGCGT 57.502 32.000 0.00 0.00 0.00 5.07
8038 12642 7.633193 TCTTTCCAAACAAAACTAGCACTAA 57.367 32.000 0.00 0.00 0.00 2.24
8183 12787 6.205658 AGCAGTATTCTGTTGGAAGAACTTTC 59.794 38.462 1.02 0.00 43.05 2.62
8434 13049 9.825109 TTAATAAACGAAGTCATCACCATCATA 57.175 29.630 0.00 0.00 45.00 2.15
8787 13460 4.979943 TGTTGTCTGTCTGATTGCAAAA 57.020 36.364 1.71 0.00 0.00 2.44
8928 13602 5.397447 GGGGTTTGGGAGTGAAAATTCTTTT 60.397 40.000 0.00 0.00 35.12 2.27
8993 13667 1.593196 ATGAAGACCCAACACACACG 58.407 50.000 0.00 0.00 0.00 4.49
9079 13867 2.427506 GAGGCAGGACGATGTTCTTTT 58.572 47.619 0.00 0.00 0.00 2.27
9161 13949 3.996150 AGATTAAATCCAGCCATTGCG 57.004 42.857 0.00 0.00 44.33 4.85
9167 13960 3.441496 AATCCAGCCATTGCGTTATTG 57.559 42.857 0.00 0.00 44.33 1.90
9269 14062 9.553064 CATATATCAGTACCAAGAGCTTCTTTT 57.447 33.333 0.00 0.00 33.78 2.27
9310 14103 3.495193 CAATTTGCCTCATGTTGAGTCG 58.505 45.455 4.00 0.00 42.80 4.18
9333 14126 5.339008 AAAGAACTTTGAAACCCTGGAAC 57.661 39.130 0.00 0.00 0.00 3.62
9334 14127 4.251103 AGAACTTTGAAACCCTGGAACT 57.749 40.909 0.00 0.00 0.00 3.01
9335 14128 3.954258 AGAACTTTGAAACCCTGGAACTG 59.046 43.478 0.00 0.00 0.00 3.16
9336 14129 9.710907 GAAAGAACTTTGAAACCCTGGAACTGG 62.711 44.444 4.48 0.00 38.91 4.00
9352 14145 3.576078 ACTGGAAAGAACCACACATGA 57.424 42.857 0.00 0.00 35.91 3.07
9374 14167 4.248859 ACACATCTGTTTGATCTCCTTCG 58.751 43.478 0.00 0.00 32.05 3.79
9401 14194 4.709886 TCTGAACTCCATCACTCCGAATAA 59.290 41.667 0.00 0.00 0.00 1.40
9427 14220 6.757897 TTGTCATCATTCCATAACTCAACC 57.242 37.500 0.00 0.00 0.00 3.77
9446 14239 3.771216 ACCAAGGACAAGCAATCTGATT 58.229 40.909 0.00 0.00 0.00 2.57
9458 14251 8.834465 ACAAGCAATCTGATTGAACTATGATAC 58.166 33.333 29.34 10.80 45.75 2.24
9466 14259 9.942850 TCTGATTGAACTATGATACTTTGAACA 57.057 29.630 0.00 0.00 0.00 3.18
9467 14260 9.979270 CTGATTGAACTATGATACTTTGAACAC 57.021 33.333 0.00 0.00 0.00 3.32
9468 14261 8.946085 TGATTGAACTATGATACTTTGAACACC 58.054 33.333 0.00 0.00 0.00 4.16
9469 14262 9.167311 GATTGAACTATGATACTTTGAACACCT 57.833 33.333 0.00 0.00 0.00 4.00
9470 14263 8.547967 TTGAACTATGATACTTTGAACACCTC 57.452 34.615 0.00 0.00 0.00 3.85
9471 14264 7.676004 TGAACTATGATACTTTGAACACCTCA 58.324 34.615 0.00 0.00 0.00 3.86
9472 14265 8.321353 TGAACTATGATACTTTGAACACCTCAT 58.679 33.333 0.00 0.00 32.78 2.90
9473 14266 9.167311 GAACTATGATACTTTGAACACCTCATT 57.833 33.333 0.00 0.00 32.78 2.57
9474 14267 9.520515 AACTATGATACTTTGAACACCTCATTT 57.479 29.630 0.00 0.00 32.78 2.32
9475 14268 8.950210 ACTATGATACTTTGAACACCTCATTTG 58.050 33.333 0.00 0.00 32.78 2.32
9476 14269 9.166173 CTATGATACTTTGAACACCTCATTTGA 57.834 33.333 0.00 0.00 32.78 2.69
9477 14270 8.585471 ATGATACTTTGAACACCTCATTTGAT 57.415 30.769 0.00 0.00 32.78 2.57
9478 14271 8.408043 TGATACTTTGAACACCTCATTTGATT 57.592 30.769 0.00 0.00 32.78 2.57
9479 14272 8.298854 TGATACTTTGAACACCTCATTTGATTG 58.701 33.333 0.00 0.00 32.78 2.67
9480 14273 6.469782 ACTTTGAACACCTCATTTGATTGT 57.530 33.333 0.00 0.00 32.78 2.71
9481 14274 6.877236 ACTTTGAACACCTCATTTGATTGTT 58.123 32.000 7.18 7.18 34.67 2.83
9482 14275 6.757947 ACTTTGAACACCTCATTTGATTGTTG 59.242 34.615 10.71 2.62 33.14 3.33
9483 14276 4.619973 TGAACACCTCATTTGATTGTTGC 58.380 39.130 10.71 5.66 33.14 4.17
9484 14277 3.665745 ACACCTCATTTGATTGTTGCC 57.334 42.857 0.00 0.00 0.00 4.52
9485 14278 3.233507 ACACCTCATTTGATTGTTGCCT 58.766 40.909 0.00 0.00 0.00 4.75
9486 14279 3.256631 ACACCTCATTTGATTGTTGCCTC 59.743 43.478 0.00 0.00 0.00 4.70
9487 14280 3.256383 CACCTCATTTGATTGTTGCCTCA 59.744 43.478 0.00 0.00 0.00 3.86
9488 14281 3.896888 ACCTCATTTGATTGTTGCCTCAA 59.103 39.130 0.00 0.00 0.00 3.02
9489 14282 4.240096 CCTCATTTGATTGTTGCCTCAAC 58.760 43.478 2.96 2.96 43.78 3.18
9490 14283 4.021719 CCTCATTTGATTGTTGCCTCAACT 60.022 41.667 10.52 0.00 43.85 3.16
9491 14284 5.125100 TCATTTGATTGTTGCCTCAACTC 57.875 39.130 10.52 2.56 43.85 3.01
9492 14285 4.022068 TCATTTGATTGTTGCCTCAACTCC 60.022 41.667 10.52 1.90 43.85 3.85
9493 14286 2.655090 TGATTGTTGCCTCAACTCCA 57.345 45.000 10.52 4.03 43.85 3.86
9494 14287 3.159213 TGATTGTTGCCTCAACTCCAT 57.841 42.857 10.52 1.61 43.85 3.41
9495 14288 3.084039 TGATTGTTGCCTCAACTCCATC 58.916 45.455 10.52 9.44 43.85 3.51
9496 14289 1.909700 TTGTTGCCTCAACTCCATCC 58.090 50.000 10.52 0.00 43.85 3.51
9497 14290 0.038166 TGTTGCCTCAACTCCATCCC 59.962 55.000 10.52 0.00 43.85 3.85
9498 14291 1.026718 GTTGCCTCAACTCCATCCCG 61.027 60.000 2.71 0.00 40.73 5.14
9499 14292 2.190578 GCCTCAACTCCATCCCGG 59.809 66.667 0.00 0.00 0.00 5.73
9500 14293 2.190578 CCTCAACTCCATCCCGGC 59.809 66.667 0.00 0.00 33.14 6.13
9501 14294 2.669133 CCTCAACTCCATCCCGGCA 61.669 63.158 0.00 0.00 33.14 5.69
9502 14295 1.450312 CTCAACTCCATCCCGGCAC 60.450 63.158 0.00 0.00 33.14 5.01
9515 14308 4.233408 GGCACGCAAAGAAGCTTG 57.767 55.556 2.10 0.00 36.90 4.01
9516 14309 1.372128 GGCACGCAAAGAAGCTTGG 60.372 57.895 2.10 0.00 34.67 3.61
9517 14310 2.018324 GCACGCAAAGAAGCTTGGC 61.018 57.895 2.10 0.92 34.67 4.52
9518 14311 1.727022 CACGCAAAGAAGCTTGGCG 60.727 57.895 23.01 23.01 34.33 5.69
9519 14312 2.126734 CGCAAAGAAGCTTGGCGG 60.127 61.111 18.47 3.27 0.00 6.13
9520 14313 2.259511 GCAAAGAAGCTTGGCGGG 59.740 61.111 2.10 0.00 0.00 6.13
9521 14314 2.259511 CAAAGAAGCTTGGCGGGC 59.740 61.111 2.10 0.00 0.00 6.13
9522 14315 2.116125 AAAGAAGCTTGGCGGGCT 59.884 55.556 2.10 0.00 42.31 5.19
9523 14316 1.973812 AAAGAAGCTTGGCGGGCTC 60.974 57.895 2.10 0.00 39.30 4.70
9524 14317 2.697147 AAAGAAGCTTGGCGGGCTCA 62.697 55.000 2.10 0.00 39.30 4.26
9525 14318 2.672996 GAAGCTTGGCGGGCTCAA 60.673 61.111 2.10 0.00 39.30 3.02
9526 14319 2.982744 GAAGCTTGGCGGGCTCAAC 61.983 63.158 2.10 0.00 39.30 3.18
9527 14320 3.790416 AAGCTTGGCGGGCTCAACA 62.790 57.895 0.00 0.00 39.30 3.33
9528 14321 3.064324 GCTTGGCGGGCTCAACAT 61.064 61.111 2.38 0.00 0.00 2.71
9529 14322 3.056313 GCTTGGCGGGCTCAACATC 62.056 63.158 2.38 0.00 0.00 3.06
9530 14323 1.675310 CTTGGCGGGCTCAACATCA 60.675 57.895 2.38 0.00 0.00 3.07
9531 14324 1.001020 TTGGCGGGCTCAACATCAT 60.001 52.632 2.38 0.00 0.00 2.45
9532 14325 1.031571 TTGGCGGGCTCAACATCATC 61.032 55.000 2.38 0.00 0.00 2.92
9533 14326 2.537560 GGCGGGCTCAACATCATCG 61.538 63.158 0.00 0.00 0.00 3.84
9534 14327 1.521457 GCGGGCTCAACATCATCGA 60.521 57.895 0.00 0.00 0.00 3.59
9535 14328 1.766143 GCGGGCTCAACATCATCGAC 61.766 60.000 0.00 0.00 0.00 4.20
9536 14329 0.179100 CGGGCTCAACATCATCGACT 60.179 55.000 0.00 0.00 0.00 4.18
9537 14330 1.293924 GGGCTCAACATCATCGACTG 58.706 55.000 0.00 0.00 0.00 3.51
9538 14331 1.406069 GGGCTCAACATCATCGACTGT 60.406 52.381 0.00 0.00 0.00 3.55
9539 14332 2.350522 GGCTCAACATCATCGACTGTT 58.649 47.619 4.50 4.50 36.04 3.16
9540 14333 2.744202 GGCTCAACATCATCGACTGTTT 59.256 45.455 7.02 0.00 33.45 2.83
9541 14334 3.932710 GGCTCAACATCATCGACTGTTTA 59.067 43.478 7.02 0.73 33.45 2.01
9542 14335 4.033358 GGCTCAACATCATCGACTGTTTAG 59.967 45.833 11.40 11.40 33.45 1.85
9543 14336 4.627467 GCTCAACATCATCGACTGTTTAGT 59.373 41.667 14.77 0.00 40.66 2.24
9553 14346 3.521524 GACTGTTTAGTCGCTTGTTGG 57.478 47.619 0.00 0.00 43.49 3.77
9554 14347 1.602377 ACTGTTTAGTCGCTTGTTGGC 59.398 47.619 0.00 0.00 28.79 4.52
9555 14348 1.873591 CTGTTTAGTCGCTTGTTGGCT 59.126 47.619 0.00 0.00 0.00 4.75
9556 14349 2.290641 CTGTTTAGTCGCTTGTTGGCTT 59.709 45.455 0.00 0.00 0.00 4.35
9557 14350 2.289547 TGTTTAGTCGCTTGTTGGCTTC 59.710 45.455 0.00 0.00 0.00 3.86
9558 14351 2.248280 TTAGTCGCTTGTTGGCTTCA 57.752 45.000 0.00 0.00 0.00 3.02
9559 14352 2.472695 TAGTCGCTTGTTGGCTTCAT 57.527 45.000 0.00 0.00 0.00 2.57
9560 14353 0.877071 AGTCGCTTGTTGGCTTCATG 59.123 50.000 0.00 0.00 0.00 3.07
9561 14354 0.109597 GTCGCTTGTTGGCTTCATGG 60.110 55.000 0.00 0.00 0.00 3.66
9562 14355 0.250684 TCGCTTGTTGGCTTCATGGA 60.251 50.000 0.00 0.00 0.00 3.41
9563 14356 0.813184 CGCTTGTTGGCTTCATGGAT 59.187 50.000 0.00 0.00 0.00 3.41
9564 14357 2.016318 CGCTTGTTGGCTTCATGGATA 58.984 47.619 0.00 0.00 0.00 2.59
9565 14358 2.423185 CGCTTGTTGGCTTCATGGATAA 59.577 45.455 0.00 0.00 0.00 1.75
9566 14359 3.488047 CGCTTGTTGGCTTCATGGATAAG 60.488 47.826 0.00 0.00 0.00 1.73
9567 14360 3.181483 GCTTGTTGGCTTCATGGATAAGG 60.181 47.826 0.00 0.00 0.00 2.69
9568 14361 4.272489 CTTGTTGGCTTCATGGATAAGGA 58.728 43.478 0.00 0.00 0.00 3.36
9569 14362 3.889815 TGTTGGCTTCATGGATAAGGAG 58.110 45.455 0.00 0.00 0.00 3.69
9570 14363 2.620585 GTTGGCTTCATGGATAAGGAGC 59.379 50.000 0.00 0.00 0.00 4.70
9571 14364 2.130193 TGGCTTCATGGATAAGGAGCT 58.870 47.619 0.00 0.00 0.00 4.09
9572 14365 2.511218 TGGCTTCATGGATAAGGAGCTT 59.489 45.455 0.00 0.00 0.00 3.74
9573 14366 3.053395 TGGCTTCATGGATAAGGAGCTTT 60.053 43.478 0.00 0.00 0.00 3.51
9574 14367 4.165950 TGGCTTCATGGATAAGGAGCTTTA 59.834 41.667 0.00 0.00 0.00 1.85
9575 14368 4.759183 GGCTTCATGGATAAGGAGCTTTAG 59.241 45.833 0.00 0.00 0.00 1.85
9576 14369 5.372373 GCTTCATGGATAAGGAGCTTTAGT 58.628 41.667 0.00 0.00 0.00 2.24
9577 14370 5.825151 GCTTCATGGATAAGGAGCTTTAGTT 59.175 40.000 0.00 0.00 0.00 2.24
9578 14371 6.319911 GCTTCATGGATAAGGAGCTTTAGTTT 59.680 38.462 0.00 0.00 0.00 2.66
9579 14372 7.467947 GCTTCATGGATAAGGAGCTTTAGTTTC 60.468 40.741 0.00 0.00 0.00 2.78
9580 14373 6.357367 TCATGGATAAGGAGCTTTAGTTTCC 58.643 40.000 0.00 0.00 0.00 3.13
9581 14374 5.772393 TGGATAAGGAGCTTTAGTTTCCA 57.228 39.130 0.00 0.00 33.32 3.53
9582 14375 6.327386 TGGATAAGGAGCTTTAGTTTCCAT 57.673 37.500 0.00 0.00 33.32 3.41
9583 14376 7.446106 TGGATAAGGAGCTTTAGTTTCCATA 57.554 36.000 0.00 0.00 33.32 2.74
9584 14377 7.509546 TGGATAAGGAGCTTTAGTTTCCATAG 58.490 38.462 0.00 0.00 33.32 2.23
9585 14378 6.428465 GGATAAGGAGCTTTAGTTTCCATAGC 59.572 42.308 0.00 0.00 33.32 2.97
9586 14379 5.443230 AAGGAGCTTTAGTTTCCATAGCT 57.557 39.130 0.00 0.00 44.32 3.32
9598 14391 2.324215 CATAGCTCATGGTTGGCCG 58.676 57.895 0.00 0.00 37.67 6.13
9599 14392 1.149174 ATAGCTCATGGTTGGCCGG 59.851 57.895 0.00 0.00 37.67 6.13
9600 14393 2.965716 ATAGCTCATGGTTGGCCGGC 62.966 60.000 21.18 21.18 37.67 6.13
9602 14395 4.776322 CTCATGGTTGGCCGGCGA 62.776 66.667 22.54 15.52 37.67 5.54
9603 14396 4.776322 TCATGGTTGGCCGGCGAG 62.776 66.667 22.54 4.04 37.67 5.03
9605 14398 4.344865 ATGGTTGGCCGGCGAGTT 62.345 61.111 22.54 0.00 37.67 3.01
9606 14399 3.860930 ATGGTTGGCCGGCGAGTTT 62.861 57.895 22.54 0.00 37.67 2.66
9607 14400 4.038080 GGTTGGCCGGCGAGTTTG 62.038 66.667 22.54 0.00 0.00 2.93
9608 14401 4.700365 GTTGGCCGGCGAGTTTGC 62.700 66.667 22.54 4.79 0.00 3.68
9617 14410 2.551270 CGAGTTTGCCGCAGACAC 59.449 61.111 15.77 8.85 0.00 3.67
9618 14411 2.551270 GAGTTTGCCGCAGACACG 59.449 61.111 15.77 0.00 0.00 4.49
9619 14412 1.954146 GAGTTTGCCGCAGACACGA 60.954 57.895 15.77 0.00 34.06 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.418045 AGTTTTAGTTGCACGCATAATTATTTT 57.582 25.926 0.00 0.00 0.00 1.82
2 3 8.980143 AGTTTTAGTTGCACGCATAATTATTT 57.020 26.923 0.00 0.00 0.00 1.40
9 10 9.752961 TCTATAATAGTTTTAGTTGCACGCATA 57.247 29.630 0.00 0.00 0.00 3.14
10 11 8.657074 TCTATAATAGTTTTAGTTGCACGCAT 57.343 30.769 0.00 0.00 0.00 4.73
11 12 8.547894 CATCTATAATAGTTTTAGTTGCACGCA 58.452 33.333 0.00 0.00 0.00 5.24
12 13 7.530861 GCATCTATAATAGTTTTAGTTGCACGC 59.469 37.037 13.46 0.00 38.04 5.34
13 14 8.009974 GGCATCTATAATAGTTTTAGTTGCACG 58.990 37.037 17.11 0.00 39.07 5.34
14 15 8.836413 TGGCATCTATAATAGTTTTAGTTGCAC 58.164 33.333 17.11 11.13 39.07 4.57
15 16 8.972458 TGGCATCTATAATAGTTTTAGTTGCA 57.028 30.769 17.11 0.00 39.07 4.08
25 26 9.284968 GGTGTGTAAATTGGCATCTATAATAGT 57.715 33.333 0.00 0.00 0.00 2.12
26 27 9.507329 AGGTGTGTAAATTGGCATCTATAATAG 57.493 33.333 0.00 0.00 0.00 1.73
27 28 9.860650 AAGGTGTGTAAATTGGCATCTATAATA 57.139 29.630 0.00 0.00 0.00 0.98
28 29 8.766994 AAGGTGTGTAAATTGGCATCTATAAT 57.233 30.769 0.00 0.00 0.00 1.28
29 30 7.831690 TGAAGGTGTGTAAATTGGCATCTATAA 59.168 33.333 0.00 0.00 0.00 0.98
30 31 7.282224 GTGAAGGTGTGTAAATTGGCATCTATA 59.718 37.037 0.00 0.00 0.00 1.31
31 32 6.095440 GTGAAGGTGTGTAAATTGGCATCTAT 59.905 38.462 0.00 0.00 0.00 1.98
32 33 5.414454 GTGAAGGTGTGTAAATTGGCATCTA 59.586 40.000 0.00 0.00 0.00 1.98
33 34 4.218417 GTGAAGGTGTGTAAATTGGCATCT 59.782 41.667 0.00 0.00 0.00 2.90
34 35 4.022416 TGTGAAGGTGTGTAAATTGGCATC 60.022 41.667 0.00 0.00 0.00 3.91
35 36 3.894427 TGTGAAGGTGTGTAAATTGGCAT 59.106 39.130 0.00 0.00 0.00 4.40
36 37 3.291584 TGTGAAGGTGTGTAAATTGGCA 58.708 40.909 0.00 0.00 0.00 4.92
37 38 4.485163 GATGTGAAGGTGTGTAAATTGGC 58.515 43.478 0.00 0.00 0.00 4.52
38 39 4.082245 GGGATGTGAAGGTGTGTAAATTGG 60.082 45.833 0.00 0.00 0.00 3.16
408 413 0.110295 CATCCCAGTCCACCACAACA 59.890 55.000 0.00 0.00 0.00 3.33
470 627 3.647771 AACGGCCCCAAGGTCCTC 61.648 66.667 0.00 0.00 32.27 3.71
471 628 3.966543 CAACGGCCCCAAGGTCCT 61.967 66.667 0.00 0.00 32.27 3.85
472 629 4.280019 ACAACGGCCCCAAGGTCC 62.280 66.667 0.00 0.00 32.27 4.46
473 630 2.983592 CACAACGGCCCCAAGGTC 60.984 66.667 0.00 0.00 34.57 3.85
474 631 4.596585 CCACAACGGCCCCAAGGT 62.597 66.667 0.00 0.00 34.57 3.50
475 632 4.596585 ACCACAACGGCCCCAAGG 62.597 66.667 0.00 0.00 39.03 3.61
476 633 3.294493 CACCACAACGGCCCCAAG 61.294 66.667 0.00 0.00 39.03 3.61
477 634 4.904590 CCACCACAACGGCCCCAA 62.905 66.667 0.00 0.00 39.03 4.12
480 637 4.265056 AGTCCACCACAACGGCCC 62.265 66.667 0.00 0.00 39.03 5.80
481 638 2.978010 CAGTCCACCACAACGGCC 60.978 66.667 0.00 0.00 39.03 6.13
482 639 2.978010 CCAGTCCACCACAACGGC 60.978 66.667 0.00 0.00 39.03 5.68
483 640 2.124507 ATCCCAGTCCACCACAACGG 62.125 60.000 0.00 0.00 42.50 4.44
484 641 0.955428 CATCCCAGTCCACCACAACG 60.955 60.000 0.00 0.00 0.00 4.10
485 642 0.609131 CCATCCCAGTCCACCACAAC 60.609 60.000 0.00 0.00 0.00 3.32
486 643 1.065410 ACCATCCCAGTCCACCACAA 61.065 55.000 0.00 0.00 0.00 3.33
487 644 1.463214 ACCATCCCAGTCCACCACA 60.463 57.895 0.00 0.00 0.00 4.17
488 645 1.002134 CACCATCCCAGTCCACCAC 60.002 63.158 0.00 0.00 0.00 4.16
489 646 2.230653 CCACCATCCCAGTCCACCA 61.231 63.158 0.00 0.00 0.00 4.17
490 647 2.231380 ACCACCATCCCAGTCCACC 61.231 63.158 0.00 0.00 0.00 4.61
491 648 1.002134 CACCACCATCCCAGTCCAC 60.002 63.158 0.00 0.00 0.00 4.02
492 649 2.230653 CCACCACCATCCCAGTCCA 61.231 63.158 0.00 0.00 0.00 4.02
493 650 2.231380 ACCACCACCATCCCAGTCC 61.231 63.158 0.00 0.00 0.00 3.85
494 651 1.002134 CACCACCACCATCCCAGTC 60.002 63.158 0.00 0.00 0.00 3.51
495 652 3.170362 CACCACCACCATCCCAGT 58.830 61.111 0.00 0.00 0.00 4.00
496 653 2.361610 GCACCACCACCATCCCAG 60.362 66.667 0.00 0.00 0.00 4.45
497 654 4.343323 CGCACCACCACCATCCCA 62.343 66.667 0.00 0.00 0.00 4.37
503 660 4.778143 CTAGGCCGCACCACCACC 62.778 72.222 0.00 0.00 43.14 4.61
515 672 1.883084 CGACGATGGTTGGCTAGGC 60.883 63.158 9.85 9.85 0.00 3.93
516 673 0.527817 GACGACGATGGTTGGCTAGG 60.528 60.000 0.00 0.00 32.28 3.02
517 674 0.866061 CGACGACGATGGTTGGCTAG 60.866 60.000 0.00 0.00 42.66 3.42
518 675 1.138036 CGACGACGATGGTTGGCTA 59.862 57.895 0.00 0.00 42.66 3.93
519 676 2.126071 CGACGACGATGGTTGGCT 60.126 61.111 0.00 0.00 42.66 4.75
520 677 2.431942 ACGACGACGATGGTTGGC 60.432 61.111 15.32 0.00 42.66 4.52
521 678 2.092291 CCACGACGACGATGGTTGG 61.092 63.158 15.32 6.89 42.66 3.77
522 679 2.726691 GCCACGACGACGATGGTTG 61.727 63.158 15.32 0.86 42.66 3.77
523 680 2.431942 GCCACGACGACGATGGTT 60.432 61.111 15.32 0.00 42.66 3.67
524 681 4.771356 CGCCACGACGACGATGGT 62.771 66.667 15.32 0.00 42.66 3.55
616 773 0.908198 CCAGAAGCCCTCAACTAGCT 59.092 55.000 0.00 0.00 38.88 3.32
663 820 4.148825 CTCTCCCCTCAACGCCGG 62.149 72.222 0.00 0.00 0.00 6.13
725 3622 1.450211 CCACCCGACTGACAACCTT 59.550 57.895 0.00 0.00 0.00 3.50
791 3692 2.309528 AAGCCGCACGATTTCTATCA 57.690 45.000 0.00 0.00 0.00 2.15
841 3742 4.314740 AAAATCTTAAAAGTGCACGCCA 57.685 36.364 12.01 0.00 0.00 5.69
842 3743 4.857037 CCTAAAATCTTAAAAGTGCACGCC 59.143 41.667 12.01 0.00 0.00 5.68
882 3783 1.468914 CTGAACACGAGAGATCCGACA 59.531 52.381 0.00 0.00 0.00 4.35
979 3887 6.680625 GCCATATACGAAAGAGACAACAGAGA 60.681 42.308 0.00 0.00 0.00 3.10
1088 3996 1.072616 GGGGAGGGGAGATTGGGAT 60.073 63.158 0.00 0.00 0.00 3.85
1090 3998 2.778717 GGGGGAGGGGAGATTGGG 60.779 72.222 0.00 0.00 0.00 4.12
1105 4013 4.835891 AGCCGTACCTCTCGGGGG 62.836 72.222 6.50 0.00 46.90 5.40
1137 4045 5.906113 CAGTATGCGGAAGGTAGATAGAT 57.094 43.478 0.00 0.00 0.00 1.98
1172 4080 2.640826 ACGAAACCATAAGGGGTCAAGA 59.359 45.455 0.00 0.00 41.32 3.02
1174 4082 2.553466 CCACGAAACCATAAGGGGTCAA 60.553 50.000 0.00 0.00 41.32 3.18
1209 4119 0.178301 GGAGGCACCCAAGCTAGTAC 59.822 60.000 0.00 0.00 34.17 2.73
1210 4120 0.042731 AGGAGGCACCCAAGCTAGTA 59.957 55.000 0.00 0.00 40.05 1.82
1211 4121 1.229658 AGGAGGCACCCAAGCTAGT 60.230 57.895 0.00 0.00 40.05 2.57
1262 4172 4.680237 TGACGAGCAACCAGGCGG 62.680 66.667 0.00 0.00 39.27 6.13
1263 4173 3.114616 CTGACGAGCAACCAGGCG 61.115 66.667 0.00 0.00 39.27 5.52
1275 4185 3.737172 CCAAAAGGGCCGCTGACG 61.737 66.667 0.00 0.00 39.67 4.35
1276 4186 3.373565 CCCAAAAGGGCCGCTGAC 61.374 66.667 0.00 0.00 34.21 3.51
1319 4229 3.818773 CCAAACAAACCCGAACAGATAGT 59.181 43.478 0.00 0.00 0.00 2.12
1340 4250 4.405358 TCATTTCATTTGCCATACTTCCCC 59.595 41.667 0.00 0.00 0.00 4.81
1615 4530 2.225467 GAAAGGCAGACTCAGCAAAGT 58.775 47.619 0.00 0.00 0.00 2.66
1716 4631 1.986882 AAAACCTTGTCAGCTCTGGG 58.013 50.000 0.00 0.00 0.00 4.45
2015 4931 8.648698 TTTTGAATGAAGTATCTTCCATGGAA 57.351 30.769 25.53 25.53 0.00 3.53
2096 5012 8.859236 AATAGCATTGCTGATTCTGTGTATAT 57.141 30.769 21.31 0.00 40.10 0.86
2097 5013 8.681486 AAATAGCATTGCTGATTCTGTGTATA 57.319 30.769 21.31 0.00 40.10 1.47
2152 5068 9.701098 ATATTCATGGTTTATGCATGATTTGTC 57.299 29.630 10.16 0.00 35.58 3.18
2380 5296 8.713971 TCACTTTGCCAGGATTCTAATATCTTA 58.286 33.333 0.00 0.00 0.00 2.10
2524 5440 4.133078 TGTGGTTGCAAATGGGAAAATTC 58.867 39.130 0.00 0.00 0.00 2.17
2557 5473 9.461312 TCTTTGCATGTATTAGGTGTTTTAGAT 57.539 29.630 0.00 0.00 0.00 1.98
2558 5474 8.726988 GTCTTTGCATGTATTAGGTGTTTTAGA 58.273 33.333 0.00 0.00 0.00 2.10
2559 5475 8.511321 TGTCTTTGCATGTATTAGGTGTTTTAG 58.489 33.333 0.00 0.00 0.00 1.85
3298 6281 6.916360 AAAGAAAATGCCATTTAGGACTCA 57.084 33.333 2.54 0.00 41.22 3.41
4028 7011 2.640826 AGTCCTTTTACCGGAACATGGA 59.359 45.455 9.46 7.35 31.13 3.41
4029 7012 3.067684 AGTCCTTTTACCGGAACATGG 57.932 47.619 9.46 4.70 31.13 3.66
4030 7013 4.998672 TGTTAGTCCTTTTACCGGAACATG 59.001 41.667 9.46 0.00 31.13 3.21
4031 7014 5.231702 TGTTAGTCCTTTTACCGGAACAT 57.768 39.130 9.46 0.00 31.13 2.71
4032 7015 4.686191 TGTTAGTCCTTTTACCGGAACA 57.314 40.909 9.46 0.28 31.13 3.18
5264 8248 6.095440 CCAGGGTGGAATGTTTTAGAATACTG 59.905 42.308 0.00 0.00 40.96 2.74
5337 8323 6.569179 ACAGAAACCATGTTTAATACGCTT 57.431 33.333 0.00 0.00 0.00 4.68
5856 10349 5.929992 GCAACTTACCACAAGACACTGTATA 59.070 40.000 0.00 0.00 0.00 1.47
5948 10441 1.588239 ACCAGCCCATCAAGATCTGA 58.412 50.000 0.00 0.00 38.81 3.27
6008 10501 7.708752 GCAAGTTATAACTATGTCAGCTTCTCT 59.291 37.037 18.31 0.00 38.57 3.10
6520 11021 8.255206 TGTATAGAGTATCATTCCACAAACGTT 58.745 33.333 0.00 0.00 37.82 3.99
6540 11041 6.868864 GGGAACACACAGCACTATATGTATAG 59.131 42.308 5.68 5.68 41.08 1.31
6552 11092 3.705934 TTGCGGGGAACACACAGCA 62.706 57.895 0.00 0.00 0.00 4.41
6767 11339 3.371595 CCTCCAAGGGTGTAAGTTATGGG 60.372 52.174 0.00 0.00 0.00 4.00
7534 12137 3.354948 ACATGGCAGCTATTGAGAACA 57.645 42.857 0.00 0.00 0.00 3.18
7919 12522 9.770097 TGGCTCAAAAATAAATAACAAATGTGA 57.230 25.926 0.00 0.00 0.00 3.58
8183 12787 7.375106 ACTGATGCTTTTAGTCATGAGAAAG 57.625 36.000 16.28 16.28 30.26 2.62
8434 13049 7.441890 TCAATGACAATACACACGGTTAATT 57.558 32.000 0.00 0.00 0.00 1.40
8487 13102 4.134563 GGTAAATGGTCACACAAGTCAGT 58.865 43.478 0.00 0.00 0.00 3.41
8787 13460 1.522668 TGCTGCTAACGCTTCACATT 58.477 45.000 0.00 0.00 36.97 2.71
8934 13608 6.377912 TCCAAGGAATTTTCACTTCCCTTTA 58.622 36.000 0.00 0.00 42.68 1.85
8937 13611 4.469469 TCCAAGGAATTTTCACTTCCCT 57.531 40.909 0.00 0.00 42.68 4.20
8993 13667 2.020836 ATAGCAACTGTAACGCGCGC 62.021 55.000 32.58 23.91 0.00 6.86
9002 13678 3.969287 TGCTTCAGAGATAGCAACTGT 57.031 42.857 0.00 0.00 43.88 3.55
9135 13923 7.043192 CGCAATGGCTGGATTTAATCTAAAAAG 60.043 37.037 4.87 0.00 38.10 2.27
9161 13949 5.758296 TCTGTTGCCGATCTAATCCAATAAC 59.242 40.000 0.00 0.00 0.00 1.89
9167 13960 5.177696 GTGTAATCTGTTGCCGATCTAATCC 59.822 44.000 0.00 0.00 0.00 3.01
9269 14062 3.146783 GTGGCGCACCTATGTGTTA 57.853 52.632 10.83 0.00 44.65 2.41
9310 14103 5.127194 AGTTCCAGGGTTTCAAAGTTCTTTC 59.873 40.000 0.00 0.00 0.00 2.62
9333 14126 3.003689 GTGTCATGTGTGGTTCTTTCCAG 59.996 47.826 0.00 0.00 38.23 3.86
9334 14127 2.948979 GTGTCATGTGTGGTTCTTTCCA 59.051 45.455 0.00 0.00 34.85 3.53
9335 14128 2.948979 TGTGTCATGTGTGGTTCTTTCC 59.051 45.455 0.00 0.00 0.00 3.13
9336 14129 4.516698 AGATGTGTCATGTGTGGTTCTTTC 59.483 41.667 0.00 0.00 0.00 2.62
9337 14130 4.276678 CAGATGTGTCATGTGTGGTTCTTT 59.723 41.667 0.00 0.00 0.00 2.52
9338 14131 3.817084 CAGATGTGTCATGTGTGGTTCTT 59.183 43.478 0.00 0.00 0.00 2.52
9352 14145 4.248859 CGAAGGAGATCAAACAGATGTGT 58.751 43.478 0.00 0.00 37.00 3.72
9374 14167 2.103941 GGAGTGATGGAGTTCAGATCCC 59.896 54.545 0.00 0.00 35.86 3.85
9401 14194 7.094205 GGTTGAGTTATGGAATGATGACAAAGT 60.094 37.037 0.00 0.00 0.00 2.66
9427 14220 5.048224 AGTTCAATCAGATTGCTTGTCCTTG 60.048 40.000 17.26 0.00 40.05 3.61
9446 14239 7.676004 TGAGGTGTTCAAAGTATCATAGTTCA 58.324 34.615 0.00 0.00 31.34 3.18
9458 14251 6.292488 GCAACAATCAAATGAGGTGTTCAAAG 60.292 38.462 10.62 4.14 39.77 2.77
9465 14258 3.256383 TGAGGCAACAATCAAATGAGGTG 59.744 43.478 0.00 0.00 41.41 4.00
9466 14259 3.499338 TGAGGCAACAATCAAATGAGGT 58.501 40.909 0.00 0.00 41.41 3.85
9467 14260 4.021719 AGTTGAGGCAACAATCAAATGAGG 60.022 41.667 12.25 0.00 45.66 3.86
9468 14261 5.130292 AGTTGAGGCAACAATCAAATGAG 57.870 39.130 12.25 0.00 45.66 2.90
9469 14262 4.022068 GGAGTTGAGGCAACAATCAAATGA 60.022 41.667 12.25 0.00 45.66 2.57
9470 14263 4.240096 GGAGTTGAGGCAACAATCAAATG 58.760 43.478 12.25 0.00 45.66 2.32
9471 14264 3.896888 TGGAGTTGAGGCAACAATCAAAT 59.103 39.130 12.25 0.00 45.66 2.32
9472 14265 3.295093 TGGAGTTGAGGCAACAATCAAA 58.705 40.909 12.25 0.00 45.66 2.69
9473 14266 2.942804 TGGAGTTGAGGCAACAATCAA 58.057 42.857 12.25 0.00 45.66 2.57
9474 14267 2.655090 TGGAGTTGAGGCAACAATCA 57.345 45.000 12.25 5.04 45.66 2.57
9475 14268 2.424956 GGATGGAGTTGAGGCAACAATC 59.575 50.000 12.25 10.89 45.66 2.67
9476 14269 2.450476 GGATGGAGTTGAGGCAACAAT 58.550 47.619 12.25 3.65 45.66 2.71
9477 14270 1.547675 GGGATGGAGTTGAGGCAACAA 60.548 52.381 12.25 0.00 45.66 2.83
9478 14271 0.038166 GGGATGGAGTTGAGGCAACA 59.962 55.000 12.25 0.00 45.66 3.33
9479 14272 1.026718 CGGGATGGAGTTGAGGCAAC 61.027 60.000 2.22 2.22 43.83 4.17
9480 14273 1.299648 CGGGATGGAGTTGAGGCAA 59.700 57.895 0.00 0.00 0.00 4.52
9481 14274 2.669133 CCGGGATGGAGTTGAGGCA 61.669 63.158 0.00 0.00 42.00 4.75
9482 14275 2.190578 CCGGGATGGAGTTGAGGC 59.809 66.667 0.00 0.00 42.00 4.70
9483 14276 2.190578 GCCGGGATGGAGTTGAGG 59.809 66.667 2.18 0.00 42.00 3.86
9484 14277 1.450312 GTGCCGGGATGGAGTTGAG 60.450 63.158 2.18 0.00 42.00 3.02
9485 14278 2.668632 GTGCCGGGATGGAGTTGA 59.331 61.111 2.18 0.00 42.00 3.18
9486 14279 2.819595 CGTGCCGGGATGGAGTTG 60.820 66.667 7.40 0.00 42.00 3.16
9487 14280 4.778143 GCGTGCCGGGATGGAGTT 62.778 66.667 17.67 0.00 42.00 3.01
9489 14282 4.776322 TTGCGTGCCGGGATGGAG 62.776 66.667 17.67 1.86 42.00 3.86
9490 14283 4.337177 TTTGCGTGCCGGGATGGA 62.337 61.111 17.67 11.90 42.00 3.41
9491 14284 3.814268 CTTTGCGTGCCGGGATGG 61.814 66.667 17.67 4.90 42.50 3.51
9492 14285 2.257286 CTTCTTTGCGTGCCGGGATG 62.257 60.000 11.42 11.42 0.00 3.51
9493 14286 2.033448 TTCTTTGCGTGCCGGGAT 59.967 55.556 2.18 0.00 0.00 3.85
9494 14287 2.668212 CTTCTTTGCGTGCCGGGA 60.668 61.111 2.18 0.00 0.00 5.14
9495 14288 4.404654 GCTTCTTTGCGTGCCGGG 62.405 66.667 2.18 0.00 0.00 5.73
9496 14289 2.908073 AAGCTTCTTTGCGTGCCGG 61.908 57.895 0.00 0.00 38.13 6.13
9497 14290 1.727022 CAAGCTTCTTTGCGTGCCG 60.727 57.895 0.00 0.00 35.89 5.69
9498 14291 1.372128 CCAAGCTTCTTTGCGTGCC 60.372 57.895 0.00 0.00 40.22 5.01
9499 14292 2.018324 GCCAAGCTTCTTTGCGTGC 61.018 57.895 0.00 0.00 40.22 5.34
9500 14293 1.727022 CGCCAAGCTTCTTTGCGTG 60.727 57.895 16.63 0.00 40.99 5.34
9501 14294 2.639286 CGCCAAGCTTCTTTGCGT 59.361 55.556 16.63 0.00 38.13 5.24
9502 14295 2.126734 CCGCCAAGCTTCTTTGCG 60.127 61.111 17.49 17.49 38.13 4.85
9503 14296 2.259511 CCCGCCAAGCTTCTTTGC 59.740 61.111 0.00 0.00 0.00 3.68
9504 14297 2.205243 GAGCCCGCCAAGCTTCTTTG 62.205 60.000 0.00 0.00 41.75 2.77
9505 14298 1.973812 GAGCCCGCCAAGCTTCTTT 60.974 57.895 0.00 0.00 41.75 2.52
9506 14299 2.360475 GAGCCCGCCAAGCTTCTT 60.360 61.111 0.00 0.00 41.75 2.52
9507 14300 3.196207 TTGAGCCCGCCAAGCTTCT 62.196 57.895 0.00 0.00 41.75 2.85
9508 14301 2.672996 TTGAGCCCGCCAAGCTTC 60.673 61.111 0.00 0.00 41.75 3.86
9509 14302 2.985847 GTTGAGCCCGCCAAGCTT 60.986 61.111 0.00 0.00 41.75 3.74
9510 14303 3.574074 ATGTTGAGCCCGCCAAGCT 62.574 57.895 0.00 0.00 45.23 3.74
9511 14304 3.056313 GATGTTGAGCCCGCCAAGC 62.056 63.158 0.00 0.00 0.00 4.01
9512 14305 1.033746 ATGATGTTGAGCCCGCCAAG 61.034 55.000 0.00 0.00 0.00 3.61
9513 14306 1.001020 ATGATGTTGAGCCCGCCAA 60.001 52.632 0.00 0.00 0.00 4.52
9514 14307 1.451927 GATGATGTTGAGCCCGCCA 60.452 57.895 0.00 0.00 0.00 5.69
9515 14308 2.537560 CGATGATGTTGAGCCCGCC 61.538 63.158 0.00 0.00 0.00 6.13
9516 14309 1.521457 TCGATGATGTTGAGCCCGC 60.521 57.895 0.00 0.00 0.00 6.13
9517 14310 0.179100 AGTCGATGATGTTGAGCCCG 60.179 55.000 0.00 0.00 0.00 6.13
9518 14311 1.293924 CAGTCGATGATGTTGAGCCC 58.706 55.000 0.00 0.00 0.00 5.19
9519 14312 2.015736 ACAGTCGATGATGTTGAGCC 57.984 50.000 0.00 0.00 0.00 4.70
9520 14313 4.627467 ACTAAACAGTCGATGATGTTGAGC 59.373 41.667 18.40 0.00 40.29 4.26
9521 14314 6.324522 GACTAAACAGTCGATGATGTTGAG 57.675 41.667 17.49 17.49 41.74 3.02
9533 14326 2.349532 GCCAACAAGCGACTAAACAGTC 60.350 50.000 0.00 0.00 35.59 3.51
9534 14327 1.602377 GCCAACAAGCGACTAAACAGT 59.398 47.619 0.00 0.00 0.00 3.55
9535 14328 1.873591 AGCCAACAAGCGACTAAACAG 59.126 47.619 0.00 0.00 38.01 3.16
9536 14329 1.961793 AGCCAACAAGCGACTAAACA 58.038 45.000 0.00 0.00 38.01 2.83
9537 14330 2.289547 TGAAGCCAACAAGCGACTAAAC 59.710 45.455 0.00 0.00 38.01 2.01
9538 14331 2.566913 TGAAGCCAACAAGCGACTAAA 58.433 42.857 0.00 0.00 38.01 1.85
9539 14332 2.248280 TGAAGCCAACAAGCGACTAA 57.752 45.000 0.00 0.00 38.01 2.24
9540 14333 2.076100 CATGAAGCCAACAAGCGACTA 58.924 47.619 0.00 0.00 38.01 2.59
9541 14334 0.877071 CATGAAGCCAACAAGCGACT 59.123 50.000 0.00 0.00 38.01 4.18
9542 14335 0.109597 CCATGAAGCCAACAAGCGAC 60.110 55.000 0.00 0.00 38.01 5.19
9543 14336 0.250684 TCCATGAAGCCAACAAGCGA 60.251 50.000 0.00 0.00 38.01 4.93
9544 14337 0.813184 ATCCATGAAGCCAACAAGCG 59.187 50.000 0.00 0.00 38.01 4.68
9545 14338 3.181483 CCTTATCCATGAAGCCAACAAGC 60.181 47.826 0.00 0.00 0.00 4.01
9546 14339 4.272489 TCCTTATCCATGAAGCCAACAAG 58.728 43.478 0.00 0.00 0.00 3.16
9547 14340 4.272489 CTCCTTATCCATGAAGCCAACAA 58.728 43.478 0.00 0.00 0.00 2.83
9548 14341 3.889815 CTCCTTATCCATGAAGCCAACA 58.110 45.455 0.00 0.00 0.00 3.33
9549 14342 2.620585 GCTCCTTATCCATGAAGCCAAC 59.379 50.000 0.00 0.00 0.00 3.77
9550 14343 2.511218 AGCTCCTTATCCATGAAGCCAA 59.489 45.455 0.00 0.00 0.00 4.52
9551 14344 2.130193 AGCTCCTTATCCATGAAGCCA 58.870 47.619 0.00 0.00 0.00 4.75
9552 14345 2.947127 AGCTCCTTATCCATGAAGCC 57.053 50.000 0.00 0.00 0.00 4.35
9553 14346 5.372373 ACTAAAGCTCCTTATCCATGAAGC 58.628 41.667 0.00 0.00 0.00 3.86
9554 14347 7.012799 GGAAACTAAAGCTCCTTATCCATGAAG 59.987 40.741 0.00 0.00 0.00 3.02
9555 14348 6.828785 GGAAACTAAAGCTCCTTATCCATGAA 59.171 38.462 0.00 0.00 0.00 2.57
9556 14349 6.069673 TGGAAACTAAAGCTCCTTATCCATGA 60.070 38.462 0.00 0.00 29.93 3.07
9557 14350 6.122277 TGGAAACTAAAGCTCCTTATCCATG 58.878 40.000 0.00 0.00 29.93 3.66
9558 14351 6.327386 TGGAAACTAAAGCTCCTTATCCAT 57.673 37.500 0.00 0.00 29.93 3.41
9559 14352 5.772393 TGGAAACTAAAGCTCCTTATCCA 57.228 39.130 0.00 0.00 32.33 3.41
9560 14353 6.428465 GCTATGGAAACTAAAGCTCCTTATCC 59.572 42.308 0.00 0.00 0.00 2.59
9561 14354 7.220740 AGCTATGGAAACTAAAGCTCCTTATC 58.779 38.462 0.00 0.00 0.00 1.75
9562 14355 7.142995 AGCTATGGAAACTAAAGCTCCTTAT 57.857 36.000 0.00 0.00 0.00 1.73
9563 14356 6.156256 TGAGCTATGGAAACTAAAGCTCCTTA 59.844 38.462 17.30 0.00 44.46 2.69
9564 14357 5.045578 TGAGCTATGGAAACTAAAGCTCCTT 60.046 40.000 17.30 0.00 44.46 3.36
9565 14358 4.471386 TGAGCTATGGAAACTAAAGCTCCT 59.529 41.667 17.30 0.00 44.46 3.69
9566 14359 4.770795 TGAGCTATGGAAACTAAAGCTCC 58.229 43.478 17.30 3.55 44.46 4.70
9567 14360 6.297694 CATGAGCTATGGAAACTAAAGCTC 57.702 41.667 14.14 14.14 45.06 4.09
9580 14373 1.168407 CCGGCCAACCATGAGCTATG 61.168 60.000 2.24 0.00 34.57 2.23
9581 14374 1.149174 CCGGCCAACCATGAGCTAT 59.851 57.895 2.24 0.00 34.57 2.97
9582 14375 2.589540 CCGGCCAACCATGAGCTA 59.410 61.111 2.24 0.00 34.57 3.32
9585 14378 4.776322 TCGCCGGCCAACCATGAG 62.776 66.667 23.46 2.86 34.57 2.90
9586 14379 4.776322 CTCGCCGGCCAACCATGA 62.776 66.667 23.46 9.48 34.57 3.07
9588 14381 3.860930 AAACTCGCCGGCCAACCAT 62.861 57.895 23.46 0.00 34.57 3.55
9589 14382 4.572571 AAACTCGCCGGCCAACCA 62.573 61.111 23.46 0.00 34.57 3.67
9590 14383 4.038080 CAAACTCGCCGGCCAACC 62.038 66.667 23.46 0.00 0.00 3.77
9591 14384 4.700365 GCAAACTCGCCGGCCAAC 62.700 66.667 23.46 0.00 0.00 3.77
9600 14393 2.551270 GTGTCTGCGGCAAACTCG 59.449 61.111 8.06 0.00 0.00 4.18
9601 14394 1.954146 TCGTGTCTGCGGCAAACTC 60.954 57.895 8.06 3.18 0.00 3.01
9602 14395 2.108157 TCGTGTCTGCGGCAAACT 59.892 55.556 8.06 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.