Multiple sequence alignment - TraesCS5B01G158200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G158200 chr5B 100.000 5050 0 0 1 5050 291502584 291497535 0.000000e+00 9326
1 TraesCS5B01G158200 chr5B 98.571 140 2 0 4911 5050 291489608 291489747 1.090000e-61 248
2 TraesCS5B01G158200 chr5D 94.909 1257 51 9 2808 4056 257162669 257161418 0.000000e+00 1954
3 TraesCS5B01G158200 chr5D 93.801 742 27 10 844 1579 257167791 257167063 0.000000e+00 1098
4 TraesCS5B01G158200 chr5D 88.839 887 71 17 1550 2433 257164136 257163275 0.000000e+00 1064
5 TraesCS5B01G158200 chr5D 93.354 647 27 5 4275 4913 257159040 257158402 0.000000e+00 942
6 TraesCS5B01G158200 chr5D 87.850 214 23 3 2470 2680 257163160 257162947 1.090000e-61 248
7 TraesCS5B01G158200 chr5D 91.200 125 7 3 2678 2801 257162914 257162793 3.130000e-37 167
8 TraesCS5B01G158200 chr5D 87.970 133 6 2 4147 4276 257161412 257161287 1.130000e-31 148
9 TraesCS5B01G158200 chr5A 93.998 1133 51 10 2943 4064 342045649 342044523 0.000000e+00 1700
10 TraesCS5B01G158200 chr5A 95.710 676 26 2 844 1518 342048346 342047673 0.000000e+00 1085
11 TraesCS5B01G158200 chr5A 92.674 546 35 4 1902 2446 342047148 342046607 0.000000e+00 782
12 TraesCS5B01G158200 chr5A 86.614 508 43 10 4152 4651 342044521 342044031 5.750000e-149 538
13 TraesCS5B01G158200 chr5A 85.442 419 32 16 1509 1901 342047648 342047233 4.710000e-110 409
14 TraesCS5B01G158200 chr5A 90.977 266 18 5 2678 2941 342045972 342045711 2.240000e-93 353
15 TraesCS5B01G158200 chr5A 86.364 286 18 12 4645 4913 342038862 342038581 4.950000e-75 292
16 TraesCS5B01G158200 chr5A 93.407 91 5 1 2525 2614 342046125 342046035 3.170000e-27 134
17 TraesCS5B01G158200 chr3B 96.327 844 30 1 1 843 519812910 519813753 0.000000e+00 1386
18 TraesCS5B01G158200 chr3B 94.581 775 33 4 1 766 690103342 690104116 0.000000e+00 1190
19 TraesCS5B01G158200 chr3B 96.581 585 17 3 261 843 765782230 765781647 0.000000e+00 966
20 TraesCS5B01G158200 chr3B 97.719 263 6 0 1 263 765788087 765787825 2.140000e-123 453
21 TraesCS5B01G158200 chr3B 100.000 87 0 0 4063 4149 819775556 819775642 1.460000e-35 161
22 TraesCS5B01G158200 chr7B 96.209 844 22 7 1 843 608309245 608308411 0.000000e+00 1373
23 TraesCS5B01G158200 chr7B 94.373 853 34 7 1 843 99110283 99109435 0.000000e+00 1297
24 TraesCS5B01G158200 chr7B 96.429 140 5 0 4911 5050 625294192 625294053 1.090000e-56 231
25 TraesCS5B01G158200 chr7B 95.714 140 6 0 4911 5050 625251910 625252049 5.090000e-55 226
26 TraesCS5B01G158200 chr7B 96.703 91 3 0 4060 4150 639040110 639040020 8.760000e-33 152
27 TraesCS5B01G158200 chr7B 93.069 101 5 2 4060 4159 534830236 534830137 4.070000e-31 147
28 TraesCS5B01G158200 chr7B 92.157 102 7 1 4053 4153 715301924 715302025 5.270000e-30 143
29 TraesCS5B01G158200 chrUn 95.030 845 40 2 1 843 70832017 70831173 0.000000e+00 1327
30 TraesCS5B01G158200 chrUn 93.921 839 43 5 1 832 70820704 70819867 0.000000e+00 1260
31 TraesCS5B01G158200 chrUn 96.454 141 5 0 4910 5050 84441905 84442045 3.040000e-57 233
32 TraesCS5B01G158200 chrUn 96.429 140 5 0 4911 5050 84449174 84449035 1.090000e-56 231
33 TraesCS5B01G158200 chrUn 95.699 93 4 0 4061 4153 84437835 84437927 3.150000e-32 150
34 TraesCS5B01G158200 chr6A 93.579 841 44 5 1 832 5075945 5075106 0.000000e+00 1245
35 TraesCS5B01G158200 chr1A 93.222 841 44 6 1 832 541075619 541074783 0.000000e+00 1225
36 TraesCS5B01G158200 chr2A 92.958 852 28 15 1 841 763147413 763146583 0.000000e+00 1212
37 TraesCS5B01G158200 chr7D 93.538 650 33 4 195 835 597509134 597508485 0.000000e+00 959
38 TraesCS5B01G158200 chr7D 94.845 97 3 2 4053 4149 92212988 92212894 3.150000e-32 150
39 TraesCS5B01G158200 chr7D 90.826 109 6 4 4064 4172 568025458 568025354 5.270000e-30 143
40 TraesCS5B01G158200 chr6B 97.143 140 4 0 4911 5050 645539007 645539146 2.350000e-58 237
41 TraesCS5B01G158200 chr4A 95.302 149 6 1 4903 5050 671026811 671026663 8.450000e-58 235
42 TraesCS5B01G158200 chr4A 94.667 150 8 0 4901 5050 671018974 671019123 3.040000e-57 233
43 TraesCS5B01G158200 chr6D 93.421 152 9 1 4899 5050 450843046 450843196 1.830000e-54 224
44 TraesCS5B01G158200 chr1B 90.090 111 10 1 4064 4173 34513182 34513292 5.270000e-30 143
45 TraesCS5B01G158200 chr3A 91.262 103 9 0 4055 4157 38264541 38264439 1.900000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G158200 chr5B 291497535 291502584 5049 True 9326.000000 9326 100.000000 1 5050 1 chr5B.!!$R1 5049
1 TraesCS5B01G158200 chr5D 257158402 257167791 9389 True 803.000000 1954 91.131857 844 4913 7 chr5D.!!$R1 4069
2 TraesCS5B01G158200 chr5A 342044031 342048346 4315 True 714.428571 1700 91.260286 844 4651 7 chr5A.!!$R2 3807
3 TraesCS5B01G158200 chr3B 519812910 519813753 843 False 1386.000000 1386 96.327000 1 843 1 chr3B.!!$F1 842
4 TraesCS5B01G158200 chr3B 690103342 690104116 774 False 1190.000000 1190 94.581000 1 766 1 chr3B.!!$F2 765
5 TraesCS5B01G158200 chr3B 765781647 765782230 583 True 966.000000 966 96.581000 261 843 1 chr3B.!!$R1 582
6 TraesCS5B01G158200 chr7B 608308411 608309245 834 True 1373.000000 1373 96.209000 1 843 1 chr7B.!!$R3 842
7 TraesCS5B01G158200 chr7B 99109435 99110283 848 True 1297.000000 1297 94.373000 1 843 1 chr7B.!!$R1 842
8 TraesCS5B01G158200 chrUn 70831173 70832017 844 True 1327.000000 1327 95.030000 1 843 1 chrUn.!!$R2 842
9 TraesCS5B01G158200 chrUn 70819867 70820704 837 True 1260.000000 1260 93.921000 1 832 1 chrUn.!!$R1 831
10 TraesCS5B01G158200 chr6A 5075106 5075945 839 True 1245.000000 1245 93.579000 1 832 1 chr6A.!!$R1 831
11 TraesCS5B01G158200 chr1A 541074783 541075619 836 True 1225.000000 1225 93.222000 1 832 1 chr1A.!!$R1 831
12 TraesCS5B01G158200 chr2A 763146583 763147413 830 True 1212.000000 1212 92.958000 1 841 1 chr2A.!!$R1 840
13 TraesCS5B01G158200 chr7D 597508485 597509134 649 True 959.000000 959 93.538000 195 835 1 chr7D.!!$R3 640

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
924 943 1.033574 CTACTCCTAGCCGTCCCAAG 58.966 60.0 0.0 0.0 0.0 3.61 F
2361 5488 1.174078 TGTCCGCCGTGTACTCTTCA 61.174 55.0 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2638 6315 0.742281 GCAGACCGCAGTGATCACAT 60.742 55.0 27.02 10.02 41.79 3.21 R
4061 7963 1.719529 TTTGGAACGGAGGGAGTACA 58.280 50.0 0.00 0.00 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 97 4.320567 CGATCAACACTATCGCTACCATCT 60.321 45.833 0.00 0.00 39.70 2.90
608 622 2.587753 GGGAAATGCGGCGATCGA 60.588 61.111 21.57 0.00 42.43 3.59
620 635 3.524606 GATCGACGGGAAGGGCGA 61.525 66.667 0.00 0.00 35.79 5.54
626 641 3.833645 CGGGAAGGGCGACGATCA 61.834 66.667 0.00 0.00 0.00 2.92
826 845 5.454187 CCCAGAATGCCCTTATACGTTAAGA 60.454 44.000 14.94 1.67 31.97 2.10
869 888 3.910568 TCTGCATGTACATCCATGTCA 57.089 42.857 5.07 0.00 43.33 3.58
879 898 9.240159 CATGTACATCCATGTCAATGTAAAATG 57.760 33.333 5.07 13.46 39.40 2.32
918 937 4.202131 GCTGAATTAACTACTCCTAGCCGT 60.202 45.833 0.00 0.00 0.00 5.68
924 943 1.033574 CTACTCCTAGCCGTCCCAAG 58.966 60.000 0.00 0.00 0.00 3.61
972 991 7.698506 TCCGAAGAAGAAGACTATACAAGAA 57.301 36.000 0.00 0.00 0.00 2.52
1020 1040 3.137176 CCATGAGACCATCACCTACCAAT 59.863 47.826 0.00 0.00 41.91 3.16
1022 1042 2.505407 TGAGACCATCACCTACCAATGG 59.495 50.000 0.00 0.00 44.54 3.16
1027 1047 2.175499 CCATCACCTACCAATGGTCCAT 59.825 50.000 8.82 0.00 37.09 3.41
1028 1048 3.394274 CCATCACCTACCAATGGTCCATA 59.606 47.826 8.82 0.00 37.09 2.74
1029 1049 4.389374 CATCACCTACCAATGGTCCATAC 58.611 47.826 8.82 0.00 37.09 2.39
1132 1158 1.408969 CTTCCTCCTCCTGCTACTCC 58.591 60.000 0.00 0.00 0.00 3.85
1449 1475 4.367023 CCGGGCCACGTCTTCGAA 62.367 66.667 4.39 0.00 42.24 3.71
1558 4568 9.613428 TTGATCCTATATAAATAAATCGCTGGG 57.387 33.333 0.00 0.00 0.00 4.45
1594 4604 5.819379 CAGTAGGCATGTGATTCATTAGTGT 59.181 40.000 0.00 0.00 34.09 3.55
1595 4605 6.317140 CAGTAGGCATGTGATTCATTAGTGTT 59.683 38.462 0.00 0.00 34.09 3.32
1596 4606 7.495606 CAGTAGGCATGTGATTCATTAGTGTTA 59.504 37.037 0.00 0.00 34.09 2.41
1637 4675 6.434028 CACAGGAATAATTTTGAACCTCTGGA 59.566 38.462 0.00 0.00 0.00 3.86
1641 4679 6.434340 GGAATAATTTTGAACCTCTGGAGTGT 59.566 38.462 0.00 0.00 0.00 3.55
1642 4680 7.039714 GGAATAATTTTGAACCTCTGGAGTGTT 60.040 37.037 4.86 4.86 0.00 3.32
1654 4692 2.281070 AGTGTTGCAGGACCAGCG 60.281 61.111 4.22 0.00 33.85 5.18
1663 4701 2.594592 GGACCAGCGCTGTTGGTT 60.595 61.111 33.75 13.85 46.69 3.67
1705 4743 7.769044 AGCAACATAACAGGTAAACTACATAGG 59.231 37.037 0.00 0.00 0.00 2.57
1734 4776 5.647658 CACTCCACTTGCATATTTCAGGTTA 59.352 40.000 0.00 0.00 0.00 2.85
1737 4779 7.099266 TCCACTTGCATATTTCAGGTTAATG 57.901 36.000 0.00 0.00 0.00 1.90
1743 4785 7.333528 TGCATATTTCAGGTTAATGAAGTCC 57.666 36.000 0.00 0.00 40.16 3.85
1845 4887 5.125100 ACACATGTTCATGTCCAAATGTC 57.875 39.130 14.43 0.00 31.37 3.06
1868 4910 6.661805 GTCATCTGTATTGTTTAGGGGGAAAA 59.338 38.462 0.00 0.00 0.00 2.29
2026 5152 8.770438 TTGGTTTCAGATATTTAAATTGGCAC 57.230 30.769 5.91 0.40 0.00 5.01
2060 5186 1.607148 GCCCTTGTAAGACACACCAAC 59.393 52.381 0.00 0.00 36.69 3.77
2080 5206 7.382218 CACCAACTGGAAAGTAAAAATAGCAAG 59.618 37.037 1.86 0.00 38.94 4.01
2081 5207 6.366061 CCAACTGGAAAGTAAAAATAGCAAGC 59.634 38.462 0.00 0.00 37.39 4.01
2121 5247 7.165427 CGCAAGCGAGAATAATATATATGCA 57.835 36.000 9.11 0.00 42.83 3.96
2129 5255 9.317936 CGAGAATAATATATATGCACACACCAT 57.682 33.333 0.00 0.00 0.00 3.55
2155 5281 9.567848 TTGTCTTTCATTTTGAACTGTAAAGAC 57.432 29.630 16.09 16.09 45.75 3.01
2167 5293 8.786826 TGAACTGTAAAGACGATATTTCCATT 57.213 30.769 0.00 0.00 0.00 3.16
2210 5336 1.962807 TGGTTCTGCCACCTCAAATTG 59.037 47.619 0.00 0.00 43.61 2.32
2222 5348 6.650390 GCCACCTCAAATTGTATTGTTTCATT 59.350 34.615 0.00 0.00 0.00 2.57
2223 5349 7.148590 GCCACCTCAAATTGTATTGTTTCATTC 60.149 37.037 0.00 0.00 0.00 2.67
2224 5350 7.871973 CCACCTCAAATTGTATTGTTTCATTCA 59.128 33.333 0.00 0.00 0.00 2.57
2225 5351 9.426837 CACCTCAAATTGTATTGTTTCATTCAT 57.573 29.630 0.00 0.00 0.00 2.57
2240 5366 4.196193 TCATTCATACCGTTTCATGGACC 58.804 43.478 0.00 0.00 0.00 4.46
2262 5388 3.316029 CCATGGTAGGTAATGTGTGCATG 59.684 47.826 2.57 0.00 35.15 4.06
2263 5389 2.364632 TGGTAGGTAATGTGTGCATGC 58.635 47.619 11.82 11.82 35.15 4.06
2283 5409 3.133542 TGCATGTTCATGAAAAACACCCA 59.866 39.130 10.35 2.28 39.29 4.51
2288 5414 5.551233 TGTTCATGAAAAACACCCACAAAA 58.449 33.333 10.35 0.00 31.90 2.44
2293 5419 6.656693 TCATGAAAAACACCCACAAAAACAAT 59.343 30.769 0.00 0.00 0.00 2.71
2321 5448 2.089201 CTTGCAGCTGATGTCATGGAA 58.911 47.619 20.43 0.00 0.00 3.53
2342 5469 6.071320 GGAATCCTTGCATATTCCTAAAGGT 58.929 40.000 20.63 0.00 45.16 3.50
2361 5488 1.174078 TGTCCGCCGTGTACTCTTCA 61.174 55.000 0.00 0.00 0.00 3.02
2438 5677 5.764131 TCGCATCACATTCATGTATACGTA 58.236 37.500 0.00 0.00 39.39 3.57
2439 5678 6.386654 TCGCATCACATTCATGTATACGTAT 58.613 36.000 13.54 13.54 39.39 3.06
2440 5679 6.307800 TCGCATCACATTCATGTATACGTATG 59.692 38.462 18.37 3.92 39.39 2.39
2441 5680 6.243551 GCATCACATTCATGTATACGTATGC 58.756 40.000 18.37 17.03 39.39 3.14
2442 5681 6.128580 GCATCACATTCATGTATACGTATGCA 60.129 38.462 25.36 25.36 39.39 3.96
2443 5682 6.763303 TCACATTCATGTATACGTATGCAC 57.237 37.500 25.62 13.96 39.39 4.57
2444 5683 6.276847 TCACATTCATGTATACGTATGCACA 58.723 36.000 25.62 18.78 39.39 4.57
2445 5684 6.928492 TCACATTCATGTATACGTATGCACAT 59.072 34.615 25.62 20.04 39.39 3.21
2446 5685 7.116233 TCACATTCATGTATACGTATGCACATC 59.884 37.037 25.62 7.01 39.39 3.06
2447 5686 6.368791 ACATTCATGTATACGTATGCACATCC 59.631 38.462 25.62 3.24 39.68 3.51
2448 5687 5.722021 TCATGTATACGTATGCACATCCT 57.278 39.130 25.62 9.35 31.23 3.24
2449 5688 6.096673 TCATGTATACGTATGCACATCCTT 57.903 37.500 25.62 8.67 31.23 3.36
2450 5689 6.521162 TCATGTATACGTATGCACATCCTTT 58.479 36.000 25.62 7.99 31.23 3.11
2451 5690 6.989759 TCATGTATACGTATGCACATCCTTTT 59.010 34.615 25.62 7.31 31.23 2.27
2452 5691 6.838198 TGTATACGTATGCACATCCTTTTC 57.162 37.500 20.58 0.00 0.00 2.29
2453 5692 6.578944 TGTATACGTATGCACATCCTTTTCT 58.421 36.000 20.58 0.00 0.00 2.52
2454 5693 7.718525 TGTATACGTATGCACATCCTTTTCTA 58.281 34.615 20.58 0.00 0.00 2.10
2455 5694 8.198778 TGTATACGTATGCACATCCTTTTCTAA 58.801 33.333 20.58 0.00 0.00 2.10
2456 5695 9.037737 GTATACGTATGCACATCCTTTTCTAAA 57.962 33.333 18.37 0.00 0.00 1.85
2457 5696 6.811253 ACGTATGCACATCCTTTTCTAAAA 57.189 33.333 0.00 0.00 0.00 1.52
2458 5697 6.842163 ACGTATGCACATCCTTTTCTAAAAG 58.158 36.000 8.00 8.00 43.82 2.27
2459 5698 6.653320 ACGTATGCACATCCTTTTCTAAAAGA 59.347 34.615 15.16 3.99 46.39 2.52
2460 5699 7.174253 ACGTATGCACATCCTTTTCTAAAAGAA 59.826 33.333 15.16 0.00 46.39 2.52
2461 5700 8.020819 CGTATGCACATCCTTTTCTAAAAGAAA 58.979 33.333 15.16 1.37 46.39 2.52
2497 5736 2.819608 ACATACAACACATGGTGGCTTC 59.180 45.455 1.31 0.00 37.94 3.86
2501 5740 2.158682 ACAACACATGGTGGCTTCACTA 60.159 45.455 1.31 0.00 41.00 2.74
2519 5758 5.154418 TCACTATATGATGGTGATGGGACA 58.846 41.667 1.91 0.00 44.37 4.02
2520 5759 5.786975 TCACTATATGATGGTGATGGGACAT 59.213 40.000 1.91 0.00 44.37 3.06
2521 5760 6.959366 TCACTATATGATGGTGATGGGACATA 59.041 38.462 1.91 0.00 44.37 2.29
2522 5761 7.124750 TCACTATATGATGGTGATGGGACATAG 59.875 40.741 1.91 0.00 44.37 2.23
2523 5762 7.093156 CACTATATGATGGTGATGGGACATAGT 60.093 40.741 0.00 0.00 43.56 2.12
2573 6250 5.843673 TTTTTAACCTTGTGATCACTGCA 57.156 34.783 25.55 9.67 0.00 4.41
2616 6293 8.956426 TGGATTTAACACTTGGAATTACATCTC 58.044 33.333 0.00 0.00 0.00 2.75
2621 6298 6.992063 ACACTTGGAATTACATCTCATGTC 57.008 37.500 0.00 0.00 43.67 3.06
2651 6328 5.523552 TCTTAATAACCATGTGATCACTGCG 59.476 40.000 25.55 14.61 0.00 5.18
2657 6334 0.742281 ATGTGATCACTGCGGTCTGC 60.742 55.000 25.55 0.00 46.70 4.26
2676 6353 1.134367 GCCGGCCAGAAAATTTAGACC 59.866 52.381 18.11 0.00 0.00 3.85
2680 6357 3.425758 CGGCCAGAAAATTTAGACCGTTC 60.426 47.826 2.24 0.00 34.83 3.95
2681 6358 3.504520 GGCCAGAAAATTTAGACCGTTCA 59.495 43.478 0.00 0.00 0.00 3.18
2683 6360 5.336451 GGCCAGAAAATTTAGACCGTTCAAT 60.336 40.000 0.00 0.00 0.00 2.57
2684 6361 6.156519 GCCAGAAAATTTAGACCGTTCAATT 58.843 36.000 0.00 0.00 0.00 2.32
2685 6362 6.308041 GCCAGAAAATTTAGACCGTTCAATTC 59.692 38.462 0.00 0.00 0.00 2.17
2686 6363 6.806739 CCAGAAAATTTAGACCGTTCAATTCC 59.193 38.462 0.00 0.00 0.00 3.01
2703 6417 2.953093 TCCCCCACATCCTACACTTA 57.047 50.000 0.00 0.00 0.00 2.24
2709 6423 5.104900 CCCCCACATCCTACACTTATATAGC 60.105 48.000 0.00 0.00 0.00 2.97
2753 6467 9.701098 ATCTTATTACTGTTTAACACTCGTTGA 57.299 29.630 0.00 0.00 36.52 3.18
2760 6474 7.627340 ACTGTTTAACACTCGTTGACAATTAG 58.373 34.615 0.00 0.00 36.52 1.73
2765 6479 9.843334 TTTAACACTCGTTGACAATTAGTTTTT 57.157 25.926 8.61 6.01 36.52 1.94
2768 6482 8.831000 ACACTCGTTGACAATTAGTTTTTAAC 57.169 30.769 3.37 0.00 0.00 2.01
2770 6484 9.498307 CACTCGTTGACAATTAGTTTTTAACTT 57.502 29.630 0.00 0.00 42.81 2.66
2771 6485 9.712359 ACTCGTTGACAATTAGTTTTTAACTTC 57.288 29.630 0.00 0.00 42.81 3.01
2772 6486 9.710979 CTCGTTGACAATTAGTTTTTAACTTCA 57.289 29.630 0.00 0.00 42.81 3.02
2837 6668 9.906660 AATCGTCTTAAACATGCAATTTTAAGA 57.093 25.926 26.67 26.67 45.53 2.10
2860 6691 8.876275 AGAATGACAACTAAAGTACGTTACAA 57.124 30.769 0.00 0.00 0.00 2.41
2985 6876 6.810888 AAAATGCATGTGATAACGCAATAC 57.189 33.333 0.00 0.00 39.99 1.89
3141 7032 8.806429 ATTGAGTGTGTATGACATTTATGGAA 57.194 30.769 0.00 0.00 36.78 3.53
3142 7033 7.609760 TGAGTGTGTATGACATTTATGGAAC 57.390 36.000 0.00 0.00 36.78 3.62
3314 7210 5.620206 TCAGTGGTTGATTGATAACACTGT 58.380 37.500 16.97 0.00 37.81 3.55
3713 7615 7.066525 AGGTGACATATTACATAAACCCGTTTG 59.933 37.037 3.07 0.00 34.23 2.93
3733 7635 6.349611 CGTTTGGTTCAAATCAATCTCATCCT 60.350 38.462 0.00 0.00 35.74 3.24
3734 7636 6.764308 TTGGTTCAAATCAATCTCATCCTC 57.236 37.500 0.00 0.00 0.00 3.71
3748 7650 6.813293 TCTCATCCTCATTTGGAAGATACA 57.187 37.500 0.00 0.00 39.85 2.29
3760 7662 9.573133 CATTTGGAAGATACAAAAAGGTCATAC 57.427 33.333 0.00 0.00 40.74 2.39
3895 7797 3.681897 CCTGAAAACCAGATTGAGACTCG 59.318 47.826 0.00 0.00 45.78 4.18
4061 7963 5.877012 CCTCATCAAGTAACAACTGTAGCAT 59.123 40.000 0.00 0.00 0.00 3.79
4062 7964 6.183360 CCTCATCAAGTAACAACTGTAGCATG 60.183 42.308 0.00 0.00 0.00 4.06
4063 7965 6.230472 TCATCAAGTAACAACTGTAGCATGT 58.770 36.000 0.00 0.00 0.00 3.21
4064 7966 7.382898 TCATCAAGTAACAACTGTAGCATGTA 58.617 34.615 0.00 0.00 0.00 2.29
4065 7967 7.330946 TCATCAAGTAACAACTGTAGCATGTAC 59.669 37.037 0.00 0.00 0.00 2.90
4066 7968 6.755206 TCAAGTAACAACTGTAGCATGTACT 58.245 36.000 0.00 0.00 0.00 2.73
4067 7969 6.866770 TCAAGTAACAACTGTAGCATGTACTC 59.133 38.462 0.00 0.00 0.00 2.59
4068 7970 5.721232 AGTAACAACTGTAGCATGTACTCC 58.279 41.667 0.00 0.00 0.00 3.85
4069 7971 3.611766 ACAACTGTAGCATGTACTCCC 57.388 47.619 0.00 0.00 0.00 4.30
4070 7972 3.173965 ACAACTGTAGCATGTACTCCCT 58.826 45.455 0.00 0.00 0.00 4.20
4071 7973 3.195825 ACAACTGTAGCATGTACTCCCTC 59.804 47.826 0.00 0.00 0.00 4.30
4072 7974 2.389715 ACTGTAGCATGTACTCCCTCC 58.610 52.381 0.00 0.00 0.00 4.30
4073 7975 1.338337 CTGTAGCATGTACTCCCTCCG 59.662 57.143 0.00 0.00 0.00 4.63
4074 7976 1.341679 TGTAGCATGTACTCCCTCCGT 60.342 52.381 0.00 0.00 0.00 4.69
4075 7977 1.755380 GTAGCATGTACTCCCTCCGTT 59.245 52.381 0.00 0.00 0.00 4.44
4076 7978 0.824759 AGCATGTACTCCCTCCGTTC 59.175 55.000 0.00 0.00 0.00 3.95
4077 7979 0.179081 GCATGTACTCCCTCCGTTCC 60.179 60.000 0.00 0.00 0.00 3.62
4078 7980 1.191535 CATGTACTCCCTCCGTTCCA 58.808 55.000 0.00 0.00 0.00 3.53
4079 7981 1.553248 CATGTACTCCCTCCGTTCCAA 59.447 52.381 0.00 0.00 0.00 3.53
4080 7982 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
4081 7983 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
4082 7984 2.640826 TGTACTCCCTCCGTTCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
4083 7985 3.839490 TGTACTCCCTCCGTTCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
4084 7986 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4085 7987 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
4086 7988 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
4087 7989 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
4088 7990 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
4089 7991 4.412199 TCCCTCCGTTCCAAAATAGATGAT 59.588 41.667 0.00 0.00 0.00 2.45
4090 7992 4.757149 CCCTCCGTTCCAAAATAGATGATC 59.243 45.833 0.00 0.00 0.00 2.92
4091 7993 4.757149 CCTCCGTTCCAAAATAGATGATCC 59.243 45.833 0.00 0.00 0.00 3.36
4092 7994 5.366482 TCCGTTCCAAAATAGATGATCCA 57.634 39.130 0.00 0.00 0.00 3.41
4093 7995 5.750524 TCCGTTCCAAAATAGATGATCCAA 58.249 37.500 0.00 0.00 0.00 3.53
4094 7996 5.588648 TCCGTTCCAAAATAGATGATCCAAC 59.411 40.000 0.00 0.00 0.00 3.77
4095 7997 5.590259 CCGTTCCAAAATAGATGATCCAACT 59.410 40.000 0.00 0.00 0.00 3.16
4096 7998 6.095440 CCGTTCCAAAATAGATGATCCAACTT 59.905 38.462 0.00 0.00 0.00 2.66
4097 7999 7.362920 CCGTTCCAAAATAGATGATCCAACTTT 60.363 37.037 0.00 0.00 0.00 2.66
4098 8000 7.485913 CGTTCCAAAATAGATGATCCAACTTTG 59.514 37.037 0.00 0.00 0.00 2.77
4099 8001 8.306761 GTTCCAAAATAGATGATCCAACTTTGT 58.693 33.333 0.00 0.00 0.00 2.83
4100 8002 9.527157 TTCCAAAATAGATGATCCAACTTTGTA 57.473 29.630 0.00 0.00 0.00 2.41
4101 8003 8.956426 TCCAAAATAGATGATCCAACTTTGTAC 58.044 33.333 0.00 0.00 0.00 2.90
4102 8004 8.960591 CCAAAATAGATGATCCAACTTTGTACT 58.039 33.333 0.00 0.00 0.00 2.73
4135 8037 9.553064 AGTATAAAGCTGAGTCATCTATTTTGG 57.447 33.333 0.00 0.00 0.00 3.28
4136 8038 9.547753 GTATAAAGCTGAGTCATCTATTTTGGA 57.452 33.333 0.00 0.00 0.00 3.53
4138 8040 6.749923 AAGCTGAGTCATCTATTTTGGAAC 57.250 37.500 0.00 0.00 0.00 3.62
4139 8041 4.872691 AGCTGAGTCATCTATTTTGGAACG 59.127 41.667 0.00 0.00 0.00 3.95
4140 8042 4.034510 GCTGAGTCATCTATTTTGGAACGG 59.965 45.833 0.00 0.00 0.00 4.44
4141 8043 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
4142 8044 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
4143 8045 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
4144 8046 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
4145 8047 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
4250 8155 8.200120 TCTCCAGTAGATAACAGATGAAACATG 58.800 37.037 0.00 0.00 0.00 3.21
4256 8161 8.973378 GTAGATAACAGATGAAACATGCTAGTC 58.027 37.037 0.00 0.00 0.00 2.59
4315 10473 5.648092 GGCATCTCTGTACAATGTAAAAGGT 59.352 40.000 7.63 0.00 0.00 3.50
4330 10488 4.868314 AAAAGGTTACTAGCGACTCTGT 57.132 40.909 0.00 0.00 0.00 3.41
4447 10620 1.812571 CACAGGTCTATTGGTTGCCAC 59.187 52.381 0.00 0.00 30.78 5.01
4448 10621 1.705186 ACAGGTCTATTGGTTGCCACT 59.295 47.619 0.00 0.00 30.78 4.00
4449 10622 2.108250 ACAGGTCTATTGGTTGCCACTT 59.892 45.455 0.00 0.00 30.78 3.16
4450 10623 2.489329 CAGGTCTATTGGTTGCCACTTG 59.511 50.000 0.00 0.00 30.78 3.16
4451 10624 1.202348 GGTCTATTGGTTGCCACTTGC 59.798 52.381 0.00 0.00 41.77 4.01
4452 10625 1.202348 GTCTATTGGTTGCCACTTGCC 59.798 52.381 0.00 0.00 40.16 4.52
4453 10626 1.202989 TCTATTGGTTGCCACTTGCCA 60.203 47.619 0.00 0.00 40.16 4.92
4601 10776 1.238439 TGCTGCACTGCCTAAACTTC 58.762 50.000 0.00 0.00 0.00 3.01
4702 10877 0.164647 GCAGTTCAACAGCAGCGTAG 59.835 55.000 0.00 0.00 30.40 3.51
4732 10907 3.059051 GGAGCATTGCGATTCAGAAGATC 60.059 47.826 2.38 0.00 0.00 2.75
4806 10982 7.923344 TGAAACATCAACGAAATGTAAAATGGT 59.077 29.630 0.00 0.00 36.35 3.55
4837 11013 6.663944 ACCTCTGCGTTATGTTAAAATCTC 57.336 37.500 0.00 0.00 0.00 2.75
4839 11015 6.313905 ACCTCTGCGTTATGTTAAAATCTCAG 59.686 38.462 0.00 0.00 0.00 3.35
4840 11016 6.535150 CCTCTGCGTTATGTTAAAATCTCAGA 59.465 38.462 0.00 0.00 0.00 3.27
4910 11086 9.807386 CGTCTGGTAACTTTCTGTTTATTTTAG 57.193 33.333 0.00 0.00 39.89 1.85
4947 11123 7.721286 AAAACATCGATATTGAAGGCTAGAG 57.279 36.000 0.00 0.00 0.00 2.43
4948 11124 6.412362 AACATCGATATTGAAGGCTAGAGT 57.588 37.500 0.00 0.00 0.00 3.24
4949 11125 6.412362 ACATCGATATTGAAGGCTAGAGTT 57.588 37.500 0.00 0.00 0.00 3.01
4950 11126 6.219473 ACATCGATATTGAAGGCTAGAGTTG 58.781 40.000 0.00 0.00 0.00 3.16
4951 11127 4.621991 TCGATATTGAAGGCTAGAGTTGC 58.378 43.478 0.00 0.00 0.00 4.17
4952 11128 4.099419 TCGATATTGAAGGCTAGAGTTGCA 59.901 41.667 0.00 0.00 0.00 4.08
4953 11129 4.447054 CGATATTGAAGGCTAGAGTTGCAG 59.553 45.833 0.00 0.00 0.00 4.41
4954 11130 3.988976 ATTGAAGGCTAGAGTTGCAGA 57.011 42.857 0.00 0.00 0.00 4.26
4955 11131 3.769739 TTGAAGGCTAGAGTTGCAGAA 57.230 42.857 0.00 0.00 0.00 3.02
4956 11132 3.769739 TGAAGGCTAGAGTTGCAGAAA 57.230 42.857 0.00 0.00 0.00 2.52
4957 11133 4.292186 TGAAGGCTAGAGTTGCAGAAAT 57.708 40.909 0.00 0.00 0.00 2.17
4958 11134 4.005650 TGAAGGCTAGAGTTGCAGAAATG 58.994 43.478 0.00 0.00 0.00 2.32
4959 11135 3.988976 AGGCTAGAGTTGCAGAAATGA 57.011 42.857 0.00 0.00 0.00 2.57
4960 11136 3.604582 AGGCTAGAGTTGCAGAAATGAC 58.395 45.455 0.00 0.00 0.00 3.06
4961 11137 3.008375 AGGCTAGAGTTGCAGAAATGACA 59.992 43.478 0.00 0.00 0.00 3.58
4962 11138 3.753272 GGCTAGAGTTGCAGAAATGACAA 59.247 43.478 0.00 0.00 0.00 3.18
4963 11139 4.142730 GGCTAGAGTTGCAGAAATGACAAG 60.143 45.833 0.00 0.00 0.00 3.16
4964 11140 4.453819 GCTAGAGTTGCAGAAATGACAAGT 59.546 41.667 0.00 0.00 0.00 3.16
4965 11141 5.390356 GCTAGAGTTGCAGAAATGACAAGTC 60.390 44.000 0.00 0.00 41.81 3.01
4966 11142 4.712476 AGAGTTGCAGAAATGACAAGTCT 58.288 39.130 6.51 6.51 45.02 3.24
4967 11143 4.514441 AGAGTTGCAGAAATGACAAGTCTG 59.486 41.667 10.61 12.31 46.90 3.51
4968 11144 4.202441 AGTTGCAGAAATGACAAGTCTGT 58.798 39.130 16.11 0.00 40.76 3.41
4969 11145 5.368145 AGTTGCAGAAATGACAAGTCTGTA 58.632 37.500 16.11 11.22 40.76 2.74
4970 11146 5.468072 AGTTGCAGAAATGACAAGTCTGTAG 59.532 40.000 16.11 0.00 40.76 2.74
4971 11147 4.960938 TGCAGAAATGACAAGTCTGTAGT 58.039 39.130 16.11 0.00 40.76 2.73
4972 11148 5.368145 TGCAGAAATGACAAGTCTGTAGTT 58.632 37.500 16.11 0.00 40.76 2.24
4973 11149 5.822519 TGCAGAAATGACAAGTCTGTAGTTT 59.177 36.000 16.11 0.00 40.76 2.66
4974 11150 6.318648 TGCAGAAATGACAAGTCTGTAGTTTT 59.681 34.615 16.11 0.00 40.76 2.43
4975 11151 6.634436 GCAGAAATGACAAGTCTGTAGTTTTG 59.366 38.462 16.11 0.00 40.76 2.44
4976 11152 7.679638 GCAGAAATGACAAGTCTGTAGTTTTGT 60.680 37.037 16.11 4.37 40.76 2.83
4977 11153 7.641411 CAGAAATGACAAGTCTGTAGTTTTGTG 59.359 37.037 9.54 0.00 35.30 3.33
4978 11154 4.875544 TGACAAGTCTGTAGTTTTGTGC 57.124 40.909 1.53 0.00 35.30 4.57
4979 11155 3.625764 TGACAAGTCTGTAGTTTTGTGCC 59.374 43.478 1.53 0.00 35.30 5.01
4980 11156 2.949644 ACAAGTCTGTAGTTTTGTGCCC 59.050 45.455 0.00 0.00 32.54 5.36
4981 11157 2.948979 CAAGTCTGTAGTTTTGTGCCCA 59.051 45.455 0.00 0.00 0.00 5.36
4982 11158 3.290948 AGTCTGTAGTTTTGTGCCCAA 57.709 42.857 0.00 0.00 0.00 4.12
4983 11159 3.626930 AGTCTGTAGTTTTGTGCCCAAA 58.373 40.909 0.00 0.00 38.77 3.28
4984 11160 4.020543 AGTCTGTAGTTTTGTGCCCAAAA 58.979 39.130 2.73 2.73 45.76 2.44
4985 11161 9.355634 ACAAGTCTGTAGTTTTGTGCCCAAAAA 62.356 37.037 8.72 0.00 41.74 1.94
4994 11170 6.670077 TTTTGTGCCCAAAAACACTAATTC 57.330 33.333 4.50 0.00 45.16 2.17
4995 11171 4.329462 TGTGCCCAAAAACACTAATTCC 57.671 40.909 0.00 0.00 37.68 3.01
4996 11172 3.070302 TGTGCCCAAAAACACTAATTCCC 59.930 43.478 0.00 0.00 37.68 3.97
4997 11173 3.070302 GTGCCCAAAAACACTAATTCCCA 59.930 43.478 0.00 0.00 33.92 4.37
4998 11174 3.323403 TGCCCAAAAACACTAATTCCCAG 59.677 43.478 0.00 0.00 0.00 4.45
4999 11175 3.306710 GCCCAAAAACACTAATTCCCAGG 60.307 47.826 0.00 0.00 0.00 4.45
5000 11176 3.306710 CCCAAAAACACTAATTCCCAGGC 60.307 47.826 0.00 0.00 0.00 4.85
5001 11177 3.578282 CCAAAAACACTAATTCCCAGGCT 59.422 43.478 0.00 0.00 0.00 4.58
5002 11178 4.770010 CCAAAAACACTAATTCCCAGGCTA 59.230 41.667 0.00 0.00 0.00 3.93
5003 11179 5.245075 CCAAAAACACTAATTCCCAGGCTAA 59.755 40.000 0.00 0.00 0.00 3.09
5004 11180 6.070824 CCAAAAACACTAATTCCCAGGCTAAT 60.071 38.462 0.00 0.00 0.00 1.73
5005 11181 7.386059 CAAAAACACTAATTCCCAGGCTAATT 58.614 34.615 0.00 0.00 0.00 1.40
5006 11182 7.553504 AAAACACTAATTCCCAGGCTAATTT 57.446 32.000 0.00 0.00 0.00 1.82
5007 11183 7.553504 AAACACTAATTCCCAGGCTAATTTT 57.446 32.000 0.00 0.00 0.00 1.82
5008 11184 7.553504 AACACTAATTCCCAGGCTAATTTTT 57.446 32.000 0.00 0.00 0.00 1.94
5026 11202 2.842208 TTTGCAGAAACCACAAGTCG 57.158 45.000 0.00 0.00 0.00 4.18
5027 11203 0.380378 TTGCAGAAACCACAAGTCGC 59.620 50.000 0.00 0.00 0.00 5.19
5028 11204 0.463654 TGCAGAAACCACAAGTCGCT 60.464 50.000 0.00 0.00 0.00 4.93
5029 11205 0.235926 GCAGAAACCACAAGTCGCTC 59.764 55.000 0.00 0.00 0.00 5.03
5030 11206 1.871080 CAGAAACCACAAGTCGCTCT 58.129 50.000 0.00 0.00 0.00 4.09
5031 11207 1.528586 CAGAAACCACAAGTCGCTCTG 59.471 52.381 0.00 0.00 0.00 3.35
5032 11208 1.139058 AGAAACCACAAGTCGCTCTGT 59.861 47.619 0.00 0.00 0.00 3.41
5033 11209 1.527311 GAAACCACAAGTCGCTCTGTC 59.473 52.381 0.00 0.00 0.00 3.51
5034 11210 0.249911 AACCACAAGTCGCTCTGTCC 60.250 55.000 0.00 0.00 0.00 4.02
5035 11211 1.734477 CCACAAGTCGCTCTGTCCG 60.734 63.158 0.00 0.00 0.00 4.79
5036 11212 1.734477 CACAAGTCGCTCTGTCCGG 60.734 63.158 0.00 0.00 0.00 5.14
5037 11213 2.201022 ACAAGTCGCTCTGTCCGGT 61.201 57.895 0.00 0.00 0.00 5.28
5038 11214 1.444553 CAAGTCGCTCTGTCCGGTC 60.445 63.158 0.00 0.00 0.00 4.79
5039 11215 2.979197 AAGTCGCTCTGTCCGGTCG 61.979 63.158 0.00 0.00 0.00 4.79
5040 11216 3.735029 GTCGCTCTGTCCGGTCGT 61.735 66.667 0.00 0.00 0.00 4.34
5041 11217 2.981909 TCGCTCTGTCCGGTCGTT 60.982 61.111 0.00 0.00 0.00 3.85
5042 11218 2.049433 CGCTCTGTCCGGTCGTTT 60.049 61.111 0.00 0.00 0.00 3.60
5043 11219 1.663702 CGCTCTGTCCGGTCGTTTT 60.664 57.895 0.00 0.00 0.00 2.43
5044 11220 0.387622 CGCTCTGTCCGGTCGTTTTA 60.388 55.000 0.00 0.00 0.00 1.52
5045 11221 1.787012 GCTCTGTCCGGTCGTTTTAA 58.213 50.000 0.00 0.00 0.00 1.52
5046 11222 1.725164 GCTCTGTCCGGTCGTTTTAAG 59.275 52.381 0.00 0.00 0.00 1.85
5047 11223 2.865276 GCTCTGTCCGGTCGTTTTAAGT 60.865 50.000 0.00 0.00 0.00 2.24
5048 11224 2.729882 CTCTGTCCGGTCGTTTTAAGTG 59.270 50.000 0.00 0.00 0.00 3.16
5049 11225 1.796459 CTGTCCGGTCGTTTTAAGTGG 59.204 52.381 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 97 2.933906 GTTTTTGGACACGAGTGAGTGA 59.066 45.455 10.50 0.00 44.43 3.41
608 622 3.834799 GATCGTCGCCCTTCCCGT 61.835 66.667 0.00 0.00 0.00 5.28
612 627 2.956964 CGCTGATCGTCGCCCTTC 60.957 66.667 0.00 0.00 0.00 3.46
645 660 2.513666 GATCACGCGGCCCAATCA 60.514 61.111 12.47 0.00 0.00 2.57
826 845 1.988406 GAGCTTCGGTACACCCCCT 60.988 63.158 0.00 0.00 0.00 4.79
869 888 9.559958 CAAAAGATACTTCGAGCATTTTACATT 57.440 29.630 0.00 0.00 0.00 2.71
879 898 4.928661 TTCAGCAAAAGATACTTCGAGC 57.071 40.909 0.00 0.00 0.00 5.03
918 937 3.010472 TCATGCCAAATCTTCTCTTGGGA 59.990 43.478 3.21 0.37 45.64 4.37
924 943 7.277319 GGAAAAAGAATCATGCCAAATCTTCTC 59.723 37.037 0.00 0.00 30.43 2.87
972 991 2.228822 GGACGTTTGCCATCATCTTGTT 59.771 45.455 0.00 0.00 0.00 2.83
1020 1040 1.202710 GGTGTGTGTGTGTATGGACCA 60.203 52.381 0.00 0.00 0.00 4.02
1022 1042 2.543777 AGGTGTGTGTGTGTATGGAC 57.456 50.000 0.00 0.00 0.00 4.02
1023 1043 2.171659 ACAAGGTGTGTGTGTGTATGGA 59.828 45.455 0.00 0.00 39.72 3.41
1027 1047 2.237643 AGGAACAAGGTGTGTGTGTGTA 59.762 45.455 0.00 0.00 40.60 2.90
1028 1048 1.004277 AGGAACAAGGTGTGTGTGTGT 59.996 47.619 0.00 0.00 40.60 3.72
1029 1049 1.750193 AGGAACAAGGTGTGTGTGTG 58.250 50.000 0.00 0.00 40.60 3.82
1449 1475 3.044059 GCCGGCGTCGTAGTAGTGT 62.044 63.158 12.58 0.00 33.95 3.55
1545 1605 3.646637 AGCTACCTACCCAGCGATTTATT 59.353 43.478 0.00 0.00 42.74 1.40
1558 4568 2.584236 TGCCTACTGCTAGCTACCTAC 58.416 52.381 17.23 2.42 42.00 3.18
1629 4639 0.764369 TCCTGCAACACTCCAGAGGT 60.764 55.000 0.00 0.00 0.00 3.85
1630 4640 0.321122 GTCCTGCAACACTCCAGAGG 60.321 60.000 0.00 0.00 0.00 3.69
1637 4675 2.281070 CGCTGGTCCTGCAACACT 60.281 61.111 19.58 0.00 0.00 3.55
1641 4679 3.772853 AACAGCGCTGGTCCTGCAA 62.773 57.895 38.27 0.00 32.37 4.08
1642 4680 4.254709 AACAGCGCTGGTCCTGCA 62.255 61.111 38.27 0.00 32.37 4.41
1654 4692 2.288395 CCTTGGAACATCAACCAACAGC 60.288 50.000 0.00 0.00 40.59 4.40
1663 4701 0.770499 TGCTGTCCCTTGGAACATCA 59.230 50.000 0.00 0.00 39.30 3.07
1705 4743 2.210144 TATGCAAGTGGAGTGGGGGC 62.210 60.000 0.00 0.00 0.00 5.80
1734 4776 8.980481 AACCTAATTGAATATCGGACTTCATT 57.020 30.769 5.87 1.44 31.83 2.57
1737 4779 6.990349 TGGAACCTAATTGAATATCGGACTTC 59.010 38.462 0.00 0.00 0.00 3.01
1743 4785 5.865085 TCCCTGGAACCTAATTGAATATCG 58.135 41.667 0.00 0.00 0.00 2.92
1845 4887 6.127451 GGTTTTCCCCCTAAACAATACAGATG 60.127 42.308 0.00 0.00 37.25 2.90
1898 4940 9.696917 ATTACTTCCTGAAATTCAAAATGTGAC 57.303 29.630 0.00 0.00 35.39 3.67
1966 5092 5.570034 CGGGTGAGGTTACTTCCTGAAATTA 60.570 44.000 0.00 0.00 38.02 1.40
1982 5108 1.616159 AATTTGTCAACCGGGTGAGG 58.384 50.000 25.94 0.00 37.30 3.86
2026 5152 3.731089 ACAAGGGCACAAATTTGACATG 58.269 40.909 24.64 13.28 0.00 3.21
2041 5167 2.878406 CAGTTGGTGTGTCTTACAAGGG 59.122 50.000 0.00 0.00 41.89 3.95
2060 5186 6.681777 ACAGCTTGCTATTTTTACTTTCCAG 58.318 36.000 0.00 0.00 0.00 3.86
2080 5206 0.933796 GCGCTCTTAATCCTGACAGC 59.066 55.000 0.00 0.00 0.00 4.40
2081 5207 2.299993 TGCGCTCTTAATCCTGACAG 57.700 50.000 9.73 0.00 0.00 3.51
2121 5247 6.219417 TCAAAATGAAAGACAATGGTGTGT 57.781 33.333 0.00 0.00 38.41 3.72
2129 5255 9.567848 GTCTTTACAGTTCAAAATGAAAGACAA 57.432 29.630 23.89 3.79 42.38 3.18
2210 5336 9.009327 CATGAAACGGTATGAATGAAACAATAC 57.991 33.333 0.00 0.00 0.00 1.89
2222 5348 1.909986 TGGGTCCATGAAACGGTATGA 59.090 47.619 0.00 0.00 0.00 2.15
2223 5349 2.411628 TGGGTCCATGAAACGGTATG 57.588 50.000 0.00 0.00 0.00 2.39
2240 5366 2.997980 TGCACACATTACCTACCATGG 58.002 47.619 11.19 11.19 0.00 3.66
2249 5375 3.835779 TGAACATGCATGCACACATTAC 58.164 40.909 25.37 11.26 32.87 1.89
2250 5376 4.158025 TCATGAACATGCATGCACACATTA 59.842 37.500 25.37 13.83 44.08 1.90
2262 5388 3.494251 GTGGGTGTTTTTCATGAACATGC 59.506 43.478 7.89 0.00 39.03 4.06
2263 5389 4.691175 TGTGGGTGTTTTTCATGAACATG 58.309 39.130 7.89 8.31 39.03 3.21
2321 5448 6.018433 ACACCTTTAGGAATATGCAAGGAT 57.982 37.500 2.06 0.00 37.93 3.24
2342 5469 1.174078 TGAAGAGTACACGGCGGACA 61.174 55.000 13.24 0.00 0.00 4.02
2361 5488 2.436911 ACCTGTCGGTGTTTAAGGTTCT 59.563 45.455 0.00 0.00 43.51 3.01
2390 5517 3.878699 TCTTGTGTGCATGCATAGTATGG 59.121 43.478 25.64 11.09 0.00 2.74
2470 5709 4.438608 CCACCATGTGTTGTATGTGCATAC 60.439 45.833 13.68 13.68 42.95 2.39
2471 5710 3.693578 CCACCATGTGTTGTATGTGCATA 59.306 43.478 0.00 0.00 0.00 3.14
2472 5711 2.492881 CCACCATGTGTTGTATGTGCAT 59.507 45.455 0.00 0.00 0.00 3.96
2497 5736 5.488262 TGTCCCATCACCATCATATAGTG 57.512 43.478 0.00 0.00 0.00 2.74
2501 5740 9.506042 TTATACTATGTCCCATCACCATCATAT 57.494 33.333 0.00 0.00 0.00 1.78
2573 6250 8.743714 GTTAAATCCACCTCAATTTTCTGATCT 58.256 33.333 0.00 0.00 0.00 2.75
2632 6309 2.092968 ACCGCAGTGATCACATGGTTAT 60.093 45.455 27.02 7.54 31.35 1.89
2638 6315 0.742281 GCAGACCGCAGTGATCACAT 60.742 55.000 27.02 10.02 41.79 3.21
2651 6328 1.250840 AATTTTCTGGCCGGCAGACC 61.251 55.000 30.85 11.60 0.00 3.85
2657 6334 1.400494 CGGTCTAAATTTTCTGGCCGG 59.600 52.381 17.83 4.71 34.97 6.13
2676 6353 1.102978 GGATGTGGGGGAATTGAACG 58.897 55.000 0.00 0.00 0.00 3.95
2680 6357 2.242196 AGTGTAGGATGTGGGGGAATTG 59.758 50.000 0.00 0.00 0.00 2.32
2681 6358 2.573463 AGTGTAGGATGTGGGGGAATT 58.427 47.619 0.00 0.00 0.00 2.17
2683 6360 2.053747 AAGTGTAGGATGTGGGGGAA 57.946 50.000 0.00 0.00 0.00 3.97
2684 6361 2.953093 TAAGTGTAGGATGTGGGGGA 57.047 50.000 0.00 0.00 0.00 4.81
2685 6362 5.104900 GCTATATAAGTGTAGGATGTGGGGG 60.105 48.000 0.00 0.00 0.00 5.40
2686 6363 5.721960 AGCTATATAAGTGTAGGATGTGGGG 59.278 44.000 0.00 0.00 0.00 4.96
2703 6417 9.624373 GATCATACCATGAAAATCCAGCTATAT 57.376 33.333 0.00 0.00 43.50 0.86
2760 6474 8.999431 TGAGATGGACACTATGAAGTTAAAAAC 58.001 33.333 0.00 0.00 31.97 2.43
2765 6479 8.593679 TCTTTTGAGATGGACACTATGAAGTTA 58.406 33.333 0.00 0.00 31.97 2.24
2767 6481 7.009179 TCTTTTGAGATGGACACTATGAAGT 57.991 36.000 0.00 0.00 35.91 3.01
2768 6482 7.388776 TGTTCTTTTGAGATGGACACTATGAAG 59.611 37.037 0.00 0.00 0.00 3.02
2770 6484 6.768483 TGTTCTTTTGAGATGGACACTATGA 58.232 36.000 0.00 0.00 0.00 2.15
2771 6485 7.621428 ATGTTCTTTTGAGATGGACACTATG 57.379 36.000 0.00 0.00 0.00 2.23
2974 6865 5.849357 TCTGTTGTTTCGTATTGCGTTAT 57.151 34.783 0.00 0.00 42.13 1.89
2985 6876 8.023128 ACCAATATTGAGATTTCTGTTGTTTCG 58.977 33.333 17.23 0.00 0.00 3.46
3073 6964 9.218440 GGAACATTAAACAAATCAATGAACCAT 57.782 29.630 0.00 0.00 34.48 3.55
3204 7100 7.098477 TGCATTAAGGAAAGATTGATGTTTGG 58.902 34.615 0.00 0.00 0.00 3.28
3552 7451 4.756642 CAGACAAGTAATCAACTCCTGCAA 59.243 41.667 0.00 0.00 37.50 4.08
3713 7615 6.956202 ATGAGGATGAGATTGATTTGAACC 57.044 37.500 0.00 0.00 0.00 3.62
3733 7635 7.831691 TGACCTTTTTGTATCTTCCAAATGA 57.168 32.000 0.00 0.00 32.28 2.57
3734 7636 9.573133 GTATGACCTTTTTGTATCTTCCAAATG 57.427 33.333 0.00 0.00 32.28 2.32
3760 7662 6.699642 ACCGAACAACCAATTTTTATGTTGAG 59.300 34.615 8.09 0.41 40.30 3.02
3831 7733 9.118300 GAGTGATCTCAATATCAAAACCAATCT 57.882 33.333 0.00 0.00 37.61 2.40
3832 7734 9.118300 AGAGTGATCTCAATATCAAAACCAATC 57.882 33.333 0.00 0.00 42.66 2.67
3895 7797 9.459640 GAAAGGAACAGATAACAGGTTTAAAAC 57.540 33.333 0.00 0.00 0.00 2.43
4061 7963 1.719529 TTTGGAACGGAGGGAGTACA 58.280 50.000 0.00 0.00 0.00 2.90
4062 7964 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
4063 7965 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
4064 7966 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
4065 7967 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
4066 7968 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
4067 7969 4.150897 TCATCTATTTTGGAACGGAGGG 57.849 45.455 0.00 0.00 0.00 4.30
4068 7970 4.757149 GGATCATCTATTTTGGAACGGAGG 59.243 45.833 0.00 0.00 0.00 4.30
4069 7971 5.368145 TGGATCATCTATTTTGGAACGGAG 58.632 41.667 0.00 0.00 0.00 4.63
4070 7972 5.366482 TGGATCATCTATTTTGGAACGGA 57.634 39.130 0.00 0.00 0.00 4.69
4071 7973 5.590259 AGTTGGATCATCTATTTTGGAACGG 59.410 40.000 0.00 0.00 0.00 4.44
4072 7974 6.683974 AGTTGGATCATCTATTTTGGAACG 57.316 37.500 0.00 0.00 0.00 3.95
4073 7975 8.306761 ACAAAGTTGGATCATCTATTTTGGAAC 58.693 33.333 11.01 0.00 0.00 3.62
4074 7976 8.421249 ACAAAGTTGGATCATCTATTTTGGAA 57.579 30.769 11.01 0.00 0.00 3.53
4075 7977 8.956426 GTACAAAGTTGGATCATCTATTTTGGA 58.044 33.333 11.01 2.87 0.00 3.53
4076 7978 8.960591 AGTACAAAGTTGGATCATCTATTTTGG 58.039 33.333 11.01 0.00 0.00 3.28
4109 8011 9.553064 CCAAAATAGATGACTCAGCTTTATACT 57.447 33.333 1.33 0.00 30.76 2.12
4110 8012 9.547753 TCCAAAATAGATGACTCAGCTTTATAC 57.452 33.333 1.33 0.00 30.76 1.47
4112 8014 8.897752 GTTCCAAAATAGATGACTCAGCTTTAT 58.102 33.333 1.33 0.00 30.76 1.40
4113 8015 7.064609 CGTTCCAAAATAGATGACTCAGCTTTA 59.935 37.037 1.33 0.00 30.76 1.85
4114 8016 6.128172 CGTTCCAAAATAGATGACTCAGCTTT 60.128 38.462 1.33 0.00 30.76 3.51
4115 8017 5.352569 CGTTCCAAAATAGATGACTCAGCTT 59.647 40.000 1.33 0.00 30.76 3.74
4116 8018 4.872691 CGTTCCAAAATAGATGACTCAGCT 59.127 41.667 1.74 1.74 33.54 4.24
4117 8019 4.034510 CCGTTCCAAAATAGATGACTCAGC 59.965 45.833 0.00 0.00 0.00 4.26
4118 8020 5.419542 TCCGTTCCAAAATAGATGACTCAG 58.580 41.667 0.00 0.00 0.00 3.35
4119 8021 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
4120 8022 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
4121 8023 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
4122 8024 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
4123 8025 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
4124 8026 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
4125 8027 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
4126 8028 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
4127 8029 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4128 8030 6.555738 TCATATACTCCCTCCGTTCCAAAATA 59.444 38.462 0.00 0.00 0.00 1.40
4129 8031 5.368523 TCATATACTCCCTCCGTTCCAAAAT 59.631 40.000 0.00 0.00 0.00 1.82
4130 8032 4.717778 TCATATACTCCCTCCGTTCCAAAA 59.282 41.667 0.00 0.00 0.00 2.44
4131 8033 4.291792 TCATATACTCCCTCCGTTCCAAA 58.708 43.478 0.00 0.00 0.00 3.28
4132 8034 3.918566 TCATATACTCCCTCCGTTCCAA 58.081 45.455 0.00 0.00 0.00 3.53
4133 8035 3.605726 TCATATACTCCCTCCGTTCCA 57.394 47.619 0.00 0.00 0.00 3.53
4134 8036 5.892119 TCATATCATATACTCCCTCCGTTCC 59.108 44.000 0.00 0.00 0.00 3.62
4135 8037 7.406031 TTCATATCATATACTCCCTCCGTTC 57.594 40.000 0.00 0.00 0.00 3.95
4136 8038 7.792364 TTTCATATCATATACTCCCTCCGTT 57.208 36.000 0.00 0.00 0.00 4.44
4137 8039 7.979786 ATTTCATATCATATACTCCCTCCGT 57.020 36.000 0.00 0.00 0.00 4.69
4138 8040 9.973450 CTTATTTCATATCATATACTCCCTCCG 57.027 37.037 0.00 0.00 0.00 4.63
4186 8088 7.984002 TTTGCAAATTCATATTGATGTACCG 57.016 32.000 8.05 0.00 34.41 4.02
4187 8089 8.767085 CCATTTGCAAATTCATATTGATGTACC 58.233 33.333 21.95 0.00 34.41 3.34
4188 8090 9.531942 TCCATTTGCAAATTCATATTGATGTAC 57.468 29.630 21.95 0.00 34.41 2.90
4190 8092 9.051679 CATCCATTTGCAAATTCATATTGATGT 57.948 29.630 21.95 0.00 34.41 3.06
4191 8093 9.051679 ACATCCATTTGCAAATTCATATTGATG 57.948 29.630 21.95 21.45 35.60 3.07
4192 8094 9.051679 CACATCCATTTGCAAATTCATATTGAT 57.948 29.630 21.95 11.62 0.00 2.57
4250 8155 5.415221 ACTTGCAGAAATCTACAGACTAGC 58.585 41.667 0.00 0.00 0.00 3.42
4256 8161 6.825584 CAAGTGTACTTGCAGAAATCTACAG 58.174 40.000 11.39 0.00 45.59 2.74
4315 10473 6.020971 TGAAATTCACAGAGTCGCTAGTAA 57.979 37.500 0.00 0.00 0.00 2.24
4447 10620 6.703607 CCTCTGATATGTAACTTACTGGCAAG 59.296 42.308 0.71 0.00 0.00 4.01
4448 10621 6.156256 ACCTCTGATATGTAACTTACTGGCAA 59.844 38.462 0.71 0.00 0.00 4.52
4449 10622 5.661312 ACCTCTGATATGTAACTTACTGGCA 59.339 40.000 0.71 0.00 0.00 4.92
4450 10623 6.163135 ACCTCTGATATGTAACTTACTGGC 57.837 41.667 0.71 0.00 0.00 4.85
4451 10624 7.070074 AGGAACCTCTGATATGTAACTTACTGG 59.930 40.741 0.71 0.00 0.00 4.00
4452 10625 7.923344 CAGGAACCTCTGATATGTAACTTACTG 59.077 40.741 0.71 0.00 36.93 2.74
4453 10626 7.070074 CCAGGAACCTCTGATATGTAACTTACT 59.930 40.741 0.71 0.00 36.93 2.24
4634 10809 4.335416 TCCATGGTCCAAACTGAGAATTC 58.665 43.478 12.58 0.00 0.00 2.17
4732 10907 1.136000 TGTTGAACTGCATCGCAATCG 60.136 47.619 0.00 0.00 38.41 3.34
4777 10952 8.689251 TTTTACATTTCGTTGATGTTTCACAA 57.311 26.923 6.43 0.00 38.58 3.33
4806 10982 3.056107 ACATAACGCAGAGGTTCAAGCTA 60.056 43.478 0.00 0.00 0.00 3.32
4922 11098 7.770897 ACTCTAGCCTTCAATATCGATGTTTTT 59.229 33.333 8.54 0.00 0.00 1.94
4923 11099 7.275920 ACTCTAGCCTTCAATATCGATGTTTT 58.724 34.615 8.54 0.00 0.00 2.43
4924 11100 6.821388 ACTCTAGCCTTCAATATCGATGTTT 58.179 36.000 8.54 0.00 0.00 2.83
4925 11101 6.412362 ACTCTAGCCTTCAATATCGATGTT 57.588 37.500 8.54 4.57 0.00 2.71
4926 11102 6.219473 CAACTCTAGCCTTCAATATCGATGT 58.781 40.000 8.54 0.00 0.00 3.06
4927 11103 5.119898 GCAACTCTAGCCTTCAATATCGATG 59.880 44.000 8.54 0.00 0.00 3.84
4928 11104 5.221521 TGCAACTCTAGCCTTCAATATCGAT 60.222 40.000 2.16 2.16 0.00 3.59
4929 11105 4.099419 TGCAACTCTAGCCTTCAATATCGA 59.901 41.667 0.00 0.00 0.00 3.59
4930 11106 4.371786 TGCAACTCTAGCCTTCAATATCG 58.628 43.478 0.00 0.00 0.00 2.92
4931 11107 5.605534 TCTGCAACTCTAGCCTTCAATATC 58.394 41.667 0.00 0.00 0.00 1.63
4932 11108 5.620738 TCTGCAACTCTAGCCTTCAATAT 57.379 39.130 0.00 0.00 0.00 1.28
4933 11109 5.420725 TTCTGCAACTCTAGCCTTCAATA 57.579 39.130 0.00 0.00 0.00 1.90
4934 11110 3.988976 TCTGCAACTCTAGCCTTCAAT 57.011 42.857 0.00 0.00 0.00 2.57
4935 11111 3.769739 TTCTGCAACTCTAGCCTTCAA 57.230 42.857 0.00 0.00 0.00 2.69
4936 11112 3.769739 TTTCTGCAACTCTAGCCTTCA 57.230 42.857 0.00 0.00 0.00 3.02
4937 11113 4.094146 GTCATTTCTGCAACTCTAGCCTTC 59.906 45.833 0.00 0.00 0.00 3.46
4938 11114 4.006319 GTCATTTCTGCAACTCTAGCCTT 58.994 43.478 0.00 0.00 0.00 4.35
4939 11115 3.008375 TGTCATTTCTGCAACTCTAGCCT 59.992 43.478 0.00 0.00 0.00 4.58
4940 11116 3.338249 TGTCATTTCTGCAACTCTAGCC 58.662 45.455 0.00 0.00 0.00 3.93
4941 11117 4.453819 ACTTGTCATTTCTGCAACTCTAGC 59.546 41.667 0.00 0.00 0.00 3.42
4942 11118 5.931146 AGACTTGTCATTTCTGCAACTCTAG 59.069 40.000 3.49 0.00 0.00 2.43
4943 11119 5.698089 CAGACTTGTCATTTCTGCAACTCTA 59.302 40.000 3.49 0.00 30.90 2.43
4944 11120 4.514441 CAGACTTGTCATTTCTGCAACTCT 59.486 41.667 3.49 0.00 30.90 3.24
4945 11121 4.274459 ACAGACTTGTCATTTCTGCAACTC 59.726 41.667 9.97 0.00 40.46 3.01
4946 11122 4.202441 ACAGACTTGTCATTTCTGCAACT 58.798 39.130 9.97 0.00 40.46 3.16
4947 11123 4.558538 ACAGACTTGTCATTTCTGCAAC 57.441 40.909 9.97 0.00 40.46 4.17
4948 11124 5.368145 ACTACAGACTTGTCATTTCTGCAA 58.632 37.500 9.97 1.12 40.46 4.08
4949 11125 4.960938 ACTACAGACTTGTCATTTCTGCA 58.039 39.130 9.97 0.00 40.46 4.41
4950 11126 5.931441 AACTACAGACTTGTCATTTCTGC 57.069 39.130 9.97 0.00 40.46 4.26
4951 11127 7.641411 CACAAAACTACAGACTTGTCATTTCTG 59.359 37.037 8.88 8.88 42.17 3.02
4952 11128 7.679638 GCACAAAACTACAGACTTGTCATTTCT 60.680 37.037 3.49 0.00 38.76 2.52
4953 11129 6.414987 GCACAAAACTACAGACTTGTCATTTC 59.585 38.462 3.49 0.00 38.76 2.17
4954 11130 6.265577 GCACAAAACTACAGACTTGTCATTT 58.734 36.000 3.49 0.00 38.76 2.32
4955 11131 5.221048 GGCACAAAACTACAGACTTGTCATT 60.221 40.000 3.49 0.00 38.76 2.57
4956 11132 4.275936 GGCACAAAACTACAGACTTGTCAT 59.724 41.667 3.49 0.00 38.76 3.06
4957 11133 3.625764 GGCACAAAACTACAGACTTGTCA 59.374 43.478 3.49 0.00 38.76 3.58
4958 11134 3.003378 GGGCACAAAACTACAGACTTGTC 59.997 47.826 0.00 0.00 38.76 3.18
4959 11135 2.949644 GGGCACAAAACTACAGACTTGT 59.050 45.455 0.00 0.00 41.39 3.16
4960 11136 2.948979 TGGGCACAAAACTACAGACTTG 59.051 45.455 0.00 0.00 0.00 3.16
4961 11137 3.290948 TGGGCACAAAACTACAGACTT 57.709 42.857 0.00 0.00 0.00 3.01
4962 11138 3.290948 TTGGGCACAAAACTACAGACT 57.709 42.857 0.00 0.00 32.66 3.24
4972 11148 5.119694 GGAATTAGTGTTTTTGGGCACAAA 58.880 37.500 10.84 10.84 44.40 2.83
4973 11149 4.443598 GGGAATTAGTGTTTTTGGGCACAA 60.444 41.667 0.00 0.00 38.02 3.33
4974 11150 3.070302 GGGAATTAGTGTTTTTGGGCACA 59.930 43.478 0.00 0.00 38.02 4.57
4975 11151 3.070302 TGGGAATTAGTGTTTTTGGGCAC 59.930 43.478 0.00 0.00 35.98 5.01
4976 11152 3.309296 TGGGAATTAGTGTTTTTGGGCA 58.691 40.909 0.00 0.00 0.00 5.36
4977 11153 3.306710 CCTGGGAATTAGTGTTTTTGGGC 60.307 47.826 0.00 0.00 0.00 5.36
4978 11154 3.306710 GCCTGGGAATTAGTGTTTTTGGG 60.307 47.826 0.00 0.00 0.00 4.12
4979 11155 3.578282 AGCCTGGGAATTAGTGTTTTTGG 59.422 43.478 0.00 0.00 0.00 3.28
4980 11156 4.871933 AGCCTGGGAATTAGTGTTTTTG 57.128 40.909 0.00 0.00 0.00 2.44
4981 11157 7.553504 AATTAGCCTGGGAATTAGTGTTTTT 57.446 32.000 0.00 0.00 0.00 1.94
4982 11158 7.553504 AAATTAGCCTGGGAATTAGTGTTTT 57.446 32.000 0.00 0.00 0.00 2.43
4983 11159 7.553504 AAAATTAGCCTGGGAATTAGTGTTT 57.446 32.000 0.00 0.00 0.00 2.83
4984 11160 7.553504 AAAAATTAGCCTGGGAATTAGTGTT 57.446 32.000 0.00 0.00 0.00 3.32
5005 11181 3.506810 CGACTTGTGGTTTCTGCAAAAA 58.493 40.909 0.00 0.00 0.00 1.94
5006 11182 2.733858 GCGACTTGTGGTTTCTGCAAAA 60.734 45.455 0.00 0.00 0.00 2.44
5007 11183 1.202245 GCGACTTGTGGTTTCTGCAAA 60.202 47.619 0.00 0.00 0.00 3.68
5008 11184 0.380378 GCGACTTGTGGTTTCTGCAA 59.620 50.000 0.00 0.00 0.00 4.08
5009 11185 0.463654 AGCGACTTGTGGTTTCTGCA 60.464 50.000 0.00 0.00 0.00 4.41
5010 11186 0.235926 GAGCGACTTGTGGTTTCTGC 59.764 55.000 0.00 0.00 0.00 4.26
5011 11187 1.528586 CAGAGCGACTTGTGGTTTCTG 59.471 52.381 0.00 5.60 0.00 3.02
5012 11188 1.139058 ACAGAGCGACTTGTGGTTTCT 59.861 47.619 0.00 0.00 0.00 2.52
5013 11189 1.527311 GACAGAGCGACTTGTGGTTTC 59.473 52.381 0.00 0.00 0.00 2.78
5014 11190 1.583054 GACAGAGCGACTTGTGGTTT 58.417 50.000 0.00 0.00 0.00 3.27
5015 11191 0.249911 GGACAGAGCGACTTGTGGTT 60.250 55.000 0.00 0.00 0.00 3.67
5016 11192 1.367840 GGACAGAGCGACTTGTGGT 59.632 57.895 0.00 0.00 0.00 4.16
5017 11193 1.734477 CGGACAGAGCGACTTGTGG 60.734 63.158 0.00 0.00 0.00 4.17
5018 11194 1.734477 CCGGACAGAGCGACTTGTG 60.734 63.158 0.00 0.00 0.00 3.33
5019 11195 2.143594 GACCGGACAGAGCGACTTGT 62.144 60.000 9.46 0.00 0.00 3.16
5020 11196 1.444553 GACCGGACAGAGCGACTTG 60.445 63.158 9.46 0.00 0.00 3.16
5021 11197 2.963371 GACCGGACAGAGCGACTT 59.037 61.111 9.46 0.00 0.00 3.01
5022 11198 3.432588 CGACCGGACAGAGCGACT 61.433 66.667 9.46 0.00 0.00 4.18
5023 11199 2.744307 AAACGACCGGACAGAGCGAC 62.744 60.000 9.46 0.00 0.00 5.19
5024 11200 2.079020 AAAACGACCGGACAGAGCGA 62.079 55.000 9.46 0.00 0.00 4.93
5025 11201 0.387622 TAAAACGACCGGACAGAGCG 60.388 55.000 9.46 4.20 0.00 5.03
5026 11202 1.725164 CTTAAAACGACCGGACAGAGC 59.275 52.381 9.46 0.00 0.00 4.09
5027 11203 2.729882 CACTTAAAACGACCGGACAGAG 59.270 50.000 9.46 0.00 0.00 3.35
5028 11204 2.546373 CCACTTAAAACGACCGGACAGA 60.546 50.000 9.46 0.00 0.00 3.41
5029 11205 1.796459 CCACTTAAAACGACCGGACAG 59.204 52.381 9.46 0.32 0.00 3.51
5030 11206 1.868469 CCACTTAAAACGACCGGACA 58.132 50.000 9.46 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.