Multiple sequence alignment - TraesCS5B01G156300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G156300 chr5B 100.000 2968 0 0 1 2968 288439166 288442133 0.000000e+00 5481
1 TraesCS5B01G156300 chr5B 95.588 408 16 2 1 407 534068684 534068278 0.000000e+00 652
2 TraesCS5B01G156300 chr5B 92.629 407 6 9 1 407 394609056 394609438 5.550000e-157 564
3 TraesCS5B01G156300 chr5B 91.463 410 20 4 1 406 537231946 537232344 1.560000e-152 549
4 TraesCS5B01G156300 chr5A 91.620 2136 150 15 844 2964 337634395 337632274 0.000000e+00 2926
5 TraesCS5B01G156300 chr5D 92.732 1995 109 17 845 2818 254430097 254428118 0.000000e+00 2848
6 TraesCS5B01G156300 chr5D 87.381 420 40 6 408 824 254430498 254430089 1.250000e-128 470
7 TraesCS5B01G156300 chr5D 87.582 153 19 0 2816 2968 254419509 254419357 8.450000e-41 178
8 TraesCS5B01G156300 chr6B 94.866 409 19 2 1 408 696538544 696538137 3.230000e-179 638
9 TraesCS5B01G156300 chr6B 93.983 349 21 0 59 407 355235917 355236265 2.030000e-146 529
10 TraesCS5B01G156300 chr1B 92.892 408 5 1 1 408 595454689 595455072 3.320000e-159 571
11 TraesCS5B01G156300 chr4B 91.892 407 5 2 2 408 577684849 577685227 7.240000e-151 544
12 TraesCS5B01G156300 chr4B 85.507 414 49 8 1 407 620910932 620911341 3.540000e-114 422
13 TraesCS5B01G156300 chr3B 89.487 409 39 4 1 407 741817257 741817663 5.670000e-142 514
14 TraesCS5B01G156300 chr3A 87.775 409 46 4 1 407 117370162 117370568 2.680000e-130 475
15 TraesCS5B01G156300 chr6A 86.650 412 44 11 2 407 30213403 30212997 2.100000e-121 446
16 TraesCS5B01G156300 chr4D 82.249 169 23 6 422 585 46141303 46141469 3.990000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G156300 chr5B 288439166 288442133 2967 False 5481 5481 100.0000 1 2968 1 chr5B.!!$F1 2967
1 TraesCS5B01G156300 chr5A 337632274 337634395 2121 True 2926 2926 91.6200 844 2964 1 chr5A.!!$R1 2120
2 TraesCS5B01G156300 chr5D 254428118 254430498 2380 True 1659 2848 90.0565 408 2818 2 chr5D.!!$R2 2410

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
66 67 0.033011 CGAGGAGAGAGGGGGAAGAA 60.033 60.0 0.0 0.0 0.0 2.52 F
105 106 0.035915 GGGGAAGAACAGAGTGGCTC 60.036 60.0 0.0 0.0 0.0 4.70 F
817 821 0.038310 CCCCTCAGGTTGTTTCTCCC 59.962 60.0 0.0 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1369 1380 0.108898 CGACAGCCTCTTGACTCCTG 60.109 60.0 0.00 0.0 0.00 3.86 R
1875 1890 0.676782 GGATGGTTGGAAGGGTCACG 60.677 60.0 0.00 0.0 0.00 4.35 R
2785 2813 0.892814 AAGCTTTGCCAGACTGAGCC 60.893 55.0 3.32 0.0 33.96 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.923356 GGGGCCTTCAAATCTTGACA 58.077 50.000 0.84 0.00 39.87 3.58
20 21 2.247358 GGGGCCTTCAAATCTTGACAA 58.753 47.619 0.84 0.00 39.87 3.18
21 22 2.632512 GGGGCCTTCAAATCTTGACAAA 59.367 45.455 0.84 0.00 39.87 2.83
22 23 3.261643 GGGGCCTTCAAATCTTGACAAAT 59.738 43.478 0.84 0.00 39.87 2.32
23 24 4.263025 GGGGCCTTCAAATCTTGACAAATT 60.263 41.667 0.84 0.00 39.87 1.82
24 25 5.308014 GGGCCTTCAAATCTTGACAAATTT 58.692 37.500 0.84 0.00 39.87 1.82
25 26 5.764686 GGGCCTTCAAATCTTGACAAATTTT 59.235 36.000 0.84 0.00 39.87 1.82
26 27 6.293571 GGGCCTTCAAATCTTGACAAATTTTG 60.294 38.462 0.84 7.59 39.87 2.44
27 28 6.293571 GGCCTTCAAATCTTGACAAATTTTGG 60.294 38.462 13.42 13.17 39.87 3.28
28 29 6.293571 GCCTTCAAATCTTGACAAATTTTGGG 60.294 38.462 13.42 13.27 39.87 4.12
29 30 6.293571 CCTTCAAATCTTGACAAATTTTGGGC 60.294 38.462 13.42 5.84 39.87 5.36
30 31 5.678583 TCAAATCTTGACAAATTTTGGGCA 58.321 33.333 13.42 8.17 34.08 5.36
31 32 6.118170 TCAAATCTTGACAAATTTTGGGCAA 58.882 32.000 13.42 14.19 34.08 4.52
32 33 6.600822 TCAAATCTTGACAAATTTTGGGCAAA 59.399 30.769 13.42 8.37 34.08 3.68
33 34 7.121759 TCAAATCTTGACAAATTTTGGGCAAAA 59.878 29.630 13.42 5.11 38.44 2.44
43 44 4.494091 TTTTGGGCAAAATTTGTGAGGA 57.506 36.364 7.60 0.00 35.57 3.71
44 45 3.749665 TTGGGCAAAATTTGTGAGGAG 57.250 42.857 7.60 0.00 0.00 3.69
45 46 1.344114 TGGGCAAAATTTGTGAGGAGC 59.656 47.619 7.60 0.00 0.00 4.70
46 47 1.620323 GGGCAAAATTTGTGAGGAGCT 59.380 47.619 7.60 0.00 0.00 4.09
47 48 2.353109 GGGCAAAATTTGTGAGGAGCTC 60.353 50.000 4.71 4.71 0.00 4.09
48 49 2.589014 GCAAAATTTGTGAGGAGCTCG 58.411 47.619 7.83 0.00 32.35 5.03
49 50 2.226437 GCAAAATTTGTGAGGAGCTCGA 59.774 45.455 7.83 0.00 32.35 4.04
50 51 3.669023 GCAAAATTTGTGAGGAGCTCGAG 60.669 47.826 8.45 8.45 32.35 4.04
51 52 2.393271 AATTTGTGAGGAGCTCGAGG 57.607 50.000 15.58 0.00 32.35 4.63
52 53 1.561643 ATTTGTGAGGAGCTCGAGGA 58.438 50.000 15.58 0.00 32.35 3.71
53 54 0.891373 TTTGTGAGGAGCTCGAGGAG 59.109 55.000 15.58 0.00 32.35 3.69
54 55 0.038310 TTGTGAGGAGCTCGAGGAGA 59.962 55.000 15.58 0.00 32.35 3.71
63 64 3.851565 TCGAGGAGAGAGGGGGAA 58.148 61.111 0.00 0.00 0.00 3.97
64 65 1.615814 TCGAGGAGAGAGGGGGAAG 59.384 63.158 0.00 0.00 0.00 3.46
65 66 0.919780 TCGAGGAGAGAGGGGGAAGA 60.920 60.000 0.00 0.00 0.00 2.87
66 67 0.033011 CGAGGAGAGAGGGGGAAGAA 60.033 60.000 0.00 0.00 0.00 2.52
67 68 1.491668 GAGGAGAGAGGGGGAAGAAC 58.508 60.000 0.00 0.00 0.00 3.01
68 69 0.793617 AGGAGAGAGGGGGAAGAACA 59.206 55.000 0.00 0.00 0.00 3.18
69 70 1.199615 GGAGAGAGGGGGAAGAACAG 58.800 60.000 0.00 0.00 0.00 3.16
70 71 1.273324 GGAGAGAGGGGGAAGAACAGA 60.273 57.143 0.00 0.00 0.00 3.41
71 72 2.107366 GAGAGAGGGGGAAGAACAGAG 58.893 57.143 0.00 0.00 0.00 3.35
72 73 1.199615 GAGAGGGGGAAGAACAGAGG 58.800 60.000 0.00 0.00 0.00 3.69
73 74 0.793617 AGAGGGGGAAGAACAGAGGA 59.206 55.000 0.00 0.00 0.00 3.71
74 75 1.152271 AGAGGGGGAAGAACAGAGGAA 59.848 52.381 0.00 0.00 0.00 3.36
75 76 1.557371 GAGGGGGAAGAACAGAGGAAG 59.443 57.143 0.00 0.00 0.00 3.46
76 77 1.132365 AGGGGGAAGAACAGAGGAAGT 60.132 52.381 0.00 0.00 0.00 3.01
77 78 1.003696 GGGGGAAGAACAGAGGAAGTG 59.996 57.143 0.00 0.00 0.00 3.16
78 79 1.978580 GGGGAAGAACAGAGGAAGTGA 59.021 52.381 0.00 0.00 0.00 3.41
79 80 2.027653 GGGGAAGAACAGAGGAAGTGAG 60.028 54.545 0.00 0.00 0.00 3.51
80 81 2.027653 GGGAAGAACAGAGGAAGTGAGG 60.028 54.545 0.00 0.00 0.00 3.86
81 82 2.027653 GGAAGAACAGAGGAAGTGAGGG 60.028 54.545 0.00 0.00 0.00 4.30
82 83 1.650528 AGAACAGAGGAAGTGAGGGG 58.349 55.000 0.00 0.00 0.00 4.79
83 84 1.150135 AGAACAGAGGAAGTGAGGGGA 59.850 52.381 0.00 0.00 0.00 4.81
84 85 1.978580 GAACAGAGGAAGTGAGGGGAA 59.021 52.381 0.00 0.00 0.00 3.97
85 86 2.118403 ACAGAGGAAGTGAGGGGAAA 57.882 50.000 0.00 0.00 0.00 3.13
86 87 1.981495 ACAGAGGAAGTGAGGGGAAAG 59.019 52.381 0.00 0.00 0.00 2.62
87 88 1.280421 CAGAGGAAGTGAGGGGAAAGG 59.720 57.143 0.00 0.00 0.00 3.11
88 89 0.621082 GAGGAAGTGAGGGGAAAGGG 59.379 60.000 0.00 0.00 0.00 3.95
89 90 0.846870 AGGAAGTGAGGGGAAAGGGG 60.847 60.000 0.00 0.00 0.00 4.79
90 91 0.845102 GGAAGTGAGGGGAAAGGGGA 60.845 60.000 0.00 0.00 0.00 4.81
91 92 1.073098 GAAGTGAGGGGAAAGGGGAA 58.927 55.000 0.00 0.00 0.00 3.97
92 93 1.004862 GAAGTGAGGGGAAAGGGGAAG 59.995 57.143 0.00 0.00 0.00 3.46
93 94 0.196118 AGTGAGGGGAAAGGGGAAGA 59.804 55.000 0.00 0.00 0.00 2.87
94 95 1.073098 GTGAGGGGAAAGGGGAAGAA 58.927 55.000 0.00 0.00 0.00 2.52
95 96 1.073098 TGAGGGGAAAGGGGAAGAAC 58.927 55.000 0.00 0.00 0.00 3.01
96 97 1.073098 GAGGGGAAAGGGGAAGAACA 58.927 55.000 0.00 0.00 0.00 3.18
97 98 1.004862 GAGGGGAAAGGGGAAGAACAG 59.995 57.143 0.00 0.00 0.00 3.16
98 99 1.073098 GGGGAAAGGGGAAGAACAGA 58.927 55.000 0.00 0.00 0.00 3.41
99 100 1.004862 GGGGAAAGGGGAAGAACAGAG 59.995 57.143 0.00 0.00 0.00 3.35
100 101 1.705745 GGGAAAGGGGAAGAACAGAGT 59.294 52.381 0.00 0.00 0.00 3.24
101 102 2.553247 GGGAAAGGGGAAGAACAGAGTG 60.553 54.545 0.00 0.00 0.00 3.51
102 103 2.553247 GGAAAGGGGAAGAACAGAGTGG 60.553 54.545 0.00 0.00 0.00 4.00
103 104 0.402121 AAGGGGAAGAACAGAGTGGC 59.598 55.000 0.00 0.00 0.00 5.01
104 105 0.474660 AGGGGAAGAACAGAGTGGCT 60.475 55.000 0.00 0.00 0.00 4.75
105 106 0.035915 GGGGAAGAACAGAGTGGCTC 60.036 60.000 0.00 0.00 0.00 4.70
106 107 0.390472 GGGAAGAACAGAGTGGCTCG 60.390 60.000 0.00 0.00 35.36 5.03
107 108 0.390472 GGAAGAACAGAGTGGCTCGG 60.390 60.000 0.00 0.00 35.36 4.63
108 109 0.390472 GAAGAACAGAGTGGCTCGGG 60.390 60.000 1.86 0.00 35.36 5.14
109 110 1.831652 AAGAACAGAGTGGCTCGGGG 61.832 60.000 1.86 0.00 35.36 5.73
110 111 3.316573 GAACAGAGTGGCTCGGGGG 62.317 68.421 1.86 0.00 35.36 5.40
125 126 3.489391 GGGGGACGAAGGGTTTATG 57.511 57.895 0.00 0.00 0.00 1.90
126 127 0.622136 GGGGGACGAAGGGTTTATGT 59.378 55.000 0.00 0.00 0.00 2.29
127 128 1.839354 GGGGGACGAAGGGTTTATGTA 59.161 52.381 0.00 0.00 0.00 2.29
128 129 2.420547 GGGGGACGAAGGGTTTATGTAC 60.421 54.545 0.00 0.00 0.00 2.90
129 130 2.543641 GGGACGAAGGGTTTATGTACG 58.456 52.381 0.00 0.00 0.00 3.67
130 131 2.094026 GGGACGAAGGGTTTATGTACGT 60.094 50.000 0.00 0.00 35.31 3.57
131 132 3.182182 GGACGAAGGGTTTATGTACGTC 58.818 50.000 0.00 0.00 44.66 4.34
132 133 2.848302 GACGAAGGGTTTATGTACGTCG 59.152 50.000 0.00 0.00 38.92 5.12
133 134 2.487762 ACGAAGGGTTTATGTACGTCGA 59.512 45.455 0.00 0.00 0.00 4.20
134 135 2.848302 CGAAGGGTTTATGTACGTCGAC 59.152 50.000 5.18 5.18 0.00 4.20
135 136 2.947448 AGGGTTTATGTACGTCGACC 57.053 50.000 10.58 10.06 0.00 4.79
136 137 2.450476 AGGGTTTATGTACGTCGACCT 58.550 47.619 10.58 0.34 0.00 3.85
137 138 2.827921 AGGGTTTATGTACGTCGACCTT 59.172 45.455 10.58 8.48 0.00 3.50
138 139 3.259123 AGGGTTTATGTACGTCGACCTTT 59.741 43.478 10.58 0.00 0.00 3.11
139 140 4.462483 AGGGTTTATGTACGTCGACCTTTA 59.538 41.667 10.58 0.00 0.00 1.85
140 141 4.800471 GGGTTTATGTACGTCGACCTTTAG 59.200 45.833 10.58 0.00 0.00 1.85
141 142 5.402398 GGTTTATGTACGTCGACCTTTAGT 58.598 41.667 10.58 4.04 0.00 2.24
142 143 6.404293 GGGTTTATGTACGTCGACCTTTAGTA 60.404 42.308 10.58 2.98 0.00 1.82
143 144 6.469275 GGTTTATGTACGTCGACCTTTAGTAC 59.531 42.308 18.23 18.23 38.40 2.73
144 145 4.622701 ATGTACGTCGACCTTTAGTACC 57.377 45.455 20.68 9.24 37.46 3.34
145 146 2.415168 TGTACGTCGACCTTTAGTACCG 59.585 50.000 20.68 5.89 37.46 4.02
146 147 0.804989 ACGTCGACCTTTAGTACCGG 59.195 55.000 10.58 0.00 0.00 5.28
147 148 0.804989 CGTCGACCTTTAGTACCGGT 59.195 55.000 13.98 13.98 0.00 5.28
148 149 1.200020 CGTCGACCTTTAGTACCGGTT 59.800 52.381 15.04 0.00 0.00 4.44
149 150 2.729156 CGTCGACCTTTAGTACCGGTTC 60.729 54.545 15.04 8.12 0.00 3.62
150 151 1.468520 TCGACCTTTAGTACCGGTTCG 59.531 52.381 15.04 14.04 0.00 3.95
151 152 1.200020 CGACCTTTAGTACCGGTTCGT 59.800 52.381 15.04 0.00 0.00 3.85
152 153 2.599659 GACCTTTAGTACCGGTTCGTG 58.400 52.381 15.04 0.51 0.00 4.35
153 154 1.337167 ACCTTTAGTACCGGTTCGTGC 60.337 52.381 15.04 0.00 0.00 5.34
154 155 1.353076 CTTTAGTACCGGTTCGTGCC 58.647 55.000 15.04 0.00 0.00 5.01
155 156 0.678395 TTTAGTACCGGTTCGTGCCA 59.322 50.000 15.04 0.00 0.00 4.92
156 157 0.038343 TTAGTACCGGTTCGTGCCAC 60.038 55.000 15.04 1.99 0.00 5.01
157 158 2.198906 TAGTACCGGTTCGTGCCACG 62.199 60.000 15.04 11.80 44.19 4.94
166 167 3.107661 CGTGCCACGAACCGGTAC 61.108 66.667 12.85 0.00 46.05 3.34
167 168 2.341176 GTGCCACGAACCGGTACT 59.659 61.111 8.00 0.00 36.33 2.73
168 169 1.586028 GTGCCACGAACCGGTACTA 59.414 57.895 8.00 0.00 36.33 1.82
169 170 0.038343 GTGCCACGAACCGGTACTAA 60.038 55.000 8.00 0.00 36.33 2.24
170 171 0.678395 TGCCACGAACCGGTACTAAA 59.322 50.000 8.00 0.00 0.00 1.85
171 172 1.337074 TGCCACGAACCGGTACTAAAG 60.337 52.381 8.00 0.00 0.00 1.85
172 173 1.067635 GCCACGAACCGGTACTAAAGA 60.068 52.381 8.00 0.00 0.00 2.52
173 174 2.417787 GCCACGAACCGGTACTAAAGAT 60.418 50.000 8.00 0.00 0.00 2.40
174 175 3.184541 CCACGAACCGGTACTAAAGATG 58.815 50.000 8.00 0.00 0.00 2.90
175 176 2.601763 CACGAACCGGTACTAAAGATGC 59.398 50.000 8.00 0.00 0.00 3.91
176 177 2.494870 ACGAACCGGTACTAAAGATGCT 59.505 45.455 8.00 0.00 0.00 3.79
177 178 2.858344 CGAACCGGTACTAAAGATGCTG 59.142 50.000 8.00 0.00 0.00 4.41
178 179 2.981859 ACCGGTACTAAAGATGCTGG 57.018 50.000 4.49 0.00 0.00 4.85
179 180 2.463752 ACCGGTACTAAAGATGCTGGA 58.536 47.619 4.49 0.00 0.00 3.86
180 181 2.167900 ACCGGTACTAAAGATGCTGGAC 59.832 50.000 4.49 0.00 0.00 4.02
181 182 2.460918 CGGTACTAAAGATGCTGGACG 58.539 52.381 0.00 0.00 0.00 4.79
182 183 2.798499 CGGTACTAAAGATGCTGGACGG 60.798 54.545 0.00 0.00 0.00 4.79
183 184 2.483188 GGTACTAAAGATGCTGGACGGG 60.483 54.545 0.00 0.00 0.00 5.28
184 185 0.107654 ACTAAAGATGCTGGACGGGC 60.108 55.000 0.00 0.00 0.00 6.13
185 186 0.815615 CTAAAGATGCTGGACGGGCC 60.816 60.000 0.00 0.00 37.10 5.80
186 187 2.265467 TAAAGATGCTGGACGGGCCC 62.265 60.000 13.57 13.57 34.97 5.80
195 196 4.083862 GACGGGCCCCAGACTGAC 62.084 72.222 18.66 0.00 0.00 3.51
196 197 4.954118 ACGGGCCCCAGACTGACA 62.954 66.667 18.66 0.00 0.00 3.58
197 198 3.636231 CGGGCCCCAGACTGACAA 61.636 66.667 18.66 0.00 0.00 3.18
198 199 2.034221 GGGCCCCAGACTGACAAC 59.966 66.667 12.23 0.00 0.00 3.32
199 200 2.829384 GGGCCCCAGACTGACAACA 61.829 63.158 12.23 0.00 0.00 3.33
200 201 1.600916 GGCCCCAGACTGACAACAC 60.601 63.158 3.32 0.00 0.00 3.32
201 202 1.600916 GCCCCAGACTGACAACACC 60.601 63.158 3.32 0.00 0.00 4.16
202 203 1.073199 CCCCAGACTGACAACACCC 59.927 63.158 3.32 0.00 0.00 4.61
203 204 1.418908 CCCCAGACTGACAACACCCT 61.419 60.000 3.32 0.00 0.00 4.34
204 205 0.250467 CCCAGACTGACAACACCCTG 60.250 60.000 3.32 0.00 0.00 4.45
205 206 0.886490 CCAGACTGACAACACCCTGC 60.886 60.000 3.32 0.00 0.00 4.85
206 207 0.886490 CAGACTGACAACACCCTGCC 60.886 60.000 0.00 0.00 0.00 4.85
207 208 1.148273 GACTGACAACACCCTGCCA 59.852 57.895 0.00 0.00 0.00 4.92
208 209 1.152963 ACTGACAACACCCTGCCAC 60.153 57.895 0.00 0.00 0.00 5.01
209 210 1.898574 CTGACAACACCCTGCCACC 60.899 63.158 0.00 0.00 0.00 4.61
210 211 2.194597 GACAACACCCTGCCACCA 59.805 61.111 0.00 0.00 0.00 4.17
211 212 1.228552 GACAACACCCTGCCACCAT 60.229 57.895 0.00 0.00 0.00 3.55
212 213 1.228552 ACAACACCCTGCCACCATC 60.229 57.895 0.00 0.00 0.00 3.51
213 214 1.978617 CAACACCCTGCCACCATCC 60.979 63.158 0.00 0.00 0.00 3.51
214 215 2.162906 AACACCCTGCCACCATCCT 61.163 57.895 0.00 0.00 0.00 3.24
215 216 2.142292 AACACCCTGCCACCATCCTC 62.142 60.000 0.00 0.00 0.00 3.71
216 217 2.125912 ACCCTGCCACCATCCTCT 59.874 61.111 0.00 0.00 0.00 3.69
217 218 1.542375 ACCCTGCCACCATCCTCTT 60.542 57.895 0.00 0.00 0.00 2.85
218 219 1.142688 ACCCTGCCACCATCCTCTTT 61.143 55.000 0.00 0.00 0.00 2.52
219 220 0.918983 CCCTGCCACCATCCTCTTTA 59.081 55.000 0.00 0.00 0.00 1.85
220 221 1.133976 CCCTGCCACCATCCTCTTTAG 60.134 57.143 0.00 0.00 0.00 1.85
221 222 1.561542 CCTGCCACCATCCTCTTTAGT 59.438 52.381 0.00 0.00 0.00 2.24
222 223 2.771943 CCTGCCACCATCCTCTTTAGTA 59.228 50.000 0.00 0.00 0.00 1.82
223 224 3.432326 CCTGCCACCATCCTCTTTAGTAC 60.432 52.174 0.00 0.00 0.00 2.73
224 225 2.504175 TGCCACCATCCTCTTTAGTACC 59.496 50.000 0.00 0.00 0.00 3.34
225 226 2.483188 GCCACCATCCTCTTTAGTACCG 60.483 54.545 0.00 0.00 0.00 4.02
226 227 2.102588 CCACCATCCTCTTTAGTACCGG 59.897 54.545 0.00 0.00 0.00 5.28
227 228 2.764572 CACCATCCTCTTTAGTACCGGT 59.235 50.000 13.98 13.98 0.00 5.28
228 229 3.197116 CACCATCCTCTTTAGTACCGGTT 59.803 47.826 15.04 0.00 0.00 4.44
229 230 3.450096 ACCATCCTCTTTAGTACCGGTTC 59.550 47.826 15.04 8.12 0.00 3.62
230 231 3.490419 CCATCCTCTTTAGTACCGGTTCG 60.490 52.174 15.04 0.00 0.00 3.95
231 232 2.795329 TCCTCTTTAGTACCGGTTCGT 58.205 47.619 15.04 0.00 0.00 3.85
232 233 2.489329 TCCTCTTTAGTACCGGTTCGTG 59.511 50.000 15.04 0.80 0.00 4.35
233 234 2.416431 CCTCTTTAGTACCGGTTCGTGG 60.416 54.545 15.04 1.27 0.00 4.94
234 235 1.067635 TCTTTAGTACCGGTTCGTGGC 60.068 52.381 15.04 0.00 0.00 5.01
235 236 0.678395 TTTAGTACCGGTTCGTGGCA 59.322 50.000 15.04 0.00 0.00 4.92
236 237 0.038343 TTAGTACCGGTTCGTGGCAC 60.038 55.000 15.04 7.79 0.00 5.01
237 238 2.198906 TAGTACCGGTTCGTGGCACG 62.199 60.000 32.75 32.75 44.19 5.34
246 247 3.107661 CGTGGCACGAACCGGTAC 61.108 66.667 34.85 0.00 46.05 3.34
247 248 2.341176 GTGGCACGAACCGGTACT 59.659 61.111 8.00 0.00 0.00 2.73
248 249 1.586028 GTGGCACGAACCGGTACTA 59.414 57.895 8.00 0.00 0.00 1.82
249 250 0.174162 GTGGCACGAACCGGTACTAT 59.826 55.000 8.00 0.00 0.00 2.12
250 251 1.405105 GTGGCACGAACCGGTACTATA 59.595 52.381 8.00 0.00 0.00 1.31
251 252 1.677576 TGGCACGAACCGGTACTATAG 59.322 52.381 8.00 0.00 0.00 1.31
252 253 1.000938 GGCACGAACCGGTACTATAGG 60.001 57.143 8.00 0.00 0.00 2.57
253 254 1.678101 GCACGAACCGGTACTATAGGT 59.322 52.381 8.00 0.00 40.50 3.08
258 259 1.322442 ACCGGTACTATAGGTTCGCC 58.678 55.000 4.49 0.00 33.96 5.54
259 260 1.321474 CCGGTACTATAGGTTCGCCA 58.679 55.000 4.43 0.00 40.60 5.69
260 261 1.000938 CCGGTACTATAGGTTCGCCAC 60.001 57.143 4.43 0.00 40.60 5.01
261 262 1.334419 CGGTACTATAGGTTCGCCACG 60.334 57.143 4.43 0.00 40.60 4.94
262 263 1.949525 GGTACTATAGGTTCGCCACGA 59.050 52.381 4.43 0.00 40.60 4.35
263 264 2.358898 GGTACTATAGGTTCGCCACGAA 59.641 50.000 4.43 0.00 43.75 3.85
270 271 2.049248 TTCGCCACGAACCGGTAC 60.049 61.111 8.00 0.00 41.05 3.34
271 272 2.563798 TTCGCCACGAACCGGTACT 61.564 57.895 8.00 0.00 41.05 2.73
272 273 1.240641 TTCGCCACGAACCGGTACTA 61.241 55.000 8.00 0.00 41.05 1.82
273 274 1.031571 TCGCCACGAACCGGTACTAT 61.032 55.000 8.00 0.00 31.06 2.12
274 275 0.662619 CGCCACGAACCGGTACTATA 59.337 55.000 8.00 0.00 0.00 1.31
275 276 1.334419 CGCCACGAACCGGTACTATAG 60.334 57.143 8.00 0.00 0.00 1.31
276 277 1.000938 GCCACGAACCGGTACTATAGG 60.001 57.143 8.00 6.95 0.00 2.57
277 278 2.301346 CCACGAACCGGTACTATAGGT 58.699 52.381 8.00 0.00 40.50 3.08
282 283 1.322442 ACCGGTACTATAGGTTCGCC 58.678 55.000 4.49 0.00 33.96 5.54
283 284 1.321474 CCGGTACTATAGGTTCGCCA 58.679 55.000 4.43 0.00 40.60 5.69
284 285 1.000938 CCGGTACTATAGGTTCGCCAC 60.001 57.143 4.43 0.00 40.60 5.01
285 286 1.334419 CGGTACTATAGGTTCGCCACG 60.334 57.143 4.43 0.00 40.60 4.94
286 287 1.949525 GGTACTATAGGTTCGCCACGA 59.050 52.381 4.43 0.00 40.60 4.35
287 288 2.358898 GGTACTATAGGTTCGCCACGAA 59.641 50.000 4.43 0.00 43.75 3.85
294 295 2.049248 TTCGCCACGAACCGGTAC 60.049 61.111 8.00 0.00 41.05 3.34
295 296 2.563798 TTCGCCACGAACCGGTACT 61.564 57.895 8.00 0.00 41.05 2.73
296 297 1.240641 TTCGCCACGAACCGGTACTA 61.241 55.000 8.00 0.00 41.05 1.82
297 298 1.212490 CGCCACGAACCGGTACTAA 59.788 57.895 8.00 0.00 0.00 2.24
298 299 0.179129 CGCCACGAACCGGTACTAAT 60.179 55.000 8.00 0.00 0.00 1.73
299 300 1.283736 GCCACGAACCGGTACTAATG 58.716 55.000 8.00 2.10 0.00 1.90
300 301 1.135024 GCCACGAACCGGTACTAATGA 60.135 52.381 8.00 0.00 0.00 2.57
301 302 2.805845 CCACGAACCGGTACTAATGAG 58.194 52.381 8.00 0.00 0.00 2.90
302 303 2.424601 CCACGAACCGGTACTAATGAGA 59.575 50.000 8.00 0.00 0.00 3.27
303 304 3.119388 CCACGAACCGGTACTAATGAGAA 60.119 47.826 8.00 0.00 0.00 2.87
304 305 4.441079 CCACGAACCGGTACTAATGAGAAT 60.441 45.833 8.00 0.00 0.00 2.40
305 306 4.503007 CACGAACCGGTACTAATGAGAATG 59.497 45.833 8.00 0.00 0.00 2.67
306 307 4.049186 CGAACCGGTACTAATGAGAATGG 58.951 47.826 8.00 0.00 0.00 3.16
307 308 3.470645 ACCGGTACTAATGAGAATGGC 57.529 47.619 4.49 0.00 0.00 4.40
308 309 2.104281 ACCGGTACTAATGAGAATGGCC 59.896 50.000 4.49 0.00 0.00 5.36
309 310 2.404215 CGGTACTAATGAGAATGGCCG 58.596 52.381 0.00 0.00 0.00 6.13
310 311 2.767505 GGTACTAATGAGAATGGCCGG 58.232 52.381 0.00 0.00 0.00 6.13
311 312 2.143925 GTACTAATGAGAATGGCCGGC 58.856 52.381 21.18 21.18 0.00 6.13
312 313 0.839946 ACTAATGAGAATGGCCGGCT 59.160 50.000 28.56 6.33 0.00 5.52
313 314 2.047061 ACTAATGAGAATGGCCGGCTA 58.953 47.619 28.56 23.38 0.00 3.93
314 315 2.037772 ACTAATGAGAATGGCCGGCTAG 59.962 50.000 28.56 18.29 0.00 3.42
315 316 0.536006 AATGAGAATGGCCGGCTAGC 60.536 55.000 28.56 16.86 0.00 3.42
326 327 2.818274 GGCTAGCCGTTGGAACCG 60.818 66.667 20.16 0.00 0.00 4.44
334 335 2.678471 CCGTTGGAACCGGTACTATT 57.322 50.000 8.00 0.00 40.59 1.73
335 336 2.273557 CCGTTGGAACCGGTACTATTG 58.726 52.381 8.00 0.00 40.59 1.90
336 337 2.273557 CGTTGGAACCGGTACTATTGG 58.726 52.381 8.00 0.00 0.00 3.16
337 338 2.094078 CGTTGGAACCGGTACTATTGGA 60.094 50.000 8.00 0.00 0.00 3.53
338 339 3.264947 GTTGGAACCGGTACTATTGGAC 58.735 50.000 8.00 0.00 0.00 4.02
339 340 2.538222 TGGAACCGGTACTATTGGACA 58.462 47.619 8.00 0.00 0.00 4.02
340 341 2.234414 TGGAACCGGTACTATTGGACAC 59.766 50.000 8.00 0.00 0.00 3.67
341 342 2.234414 GGAACCGGTACTATTGGACACA 59.766 50.000 8.00 0.00 0.00 3.72
342 343 3.118519 GGAACCGGTACTATTGGACACAT 60.119 47.826 8.00 0.00 0.00 3.21
343 344 4.510571 GAACCGGTACTATTGGACACATT 58.489 43.478 8.00 0.00 0.00 2.71
344 345 5.395546 GGAACCGGTACTATTGGACACATTA 60.396 44.000 8.00 0.00 0.00 1.90
345 346 5.272283 ACCGGTACTATTGGACACATTAG 57.728 43.478 4.49 0.00 36.87 1.73
346 347 4.713321 ACCGGTACTATTGGACACATTAGT 59.287 41.667 4.49 7.26 42.91 2.24
355 356 4.615901 CACATTAGTGCCGGCTCA 57.384 55.556 29.70 9.72 39.21 4.26
356 357 2.853159 CACATTAGTGCCGGCTCAA 58.147 52.632 29.70 19.77 39.21 3.02
357 358 1.164411 CACATTAGTGCCGGCTCAAA 58.836 50.000 29.70 18.42 39.21 2.69
358 359 1.539388 CACATTAGTGCCGGCTCAAAA 59.461 47.619 29.70 21.42 39.21 2.44
359 360 1.539827 ACATTAGTGCCGGCTCAAAAC 59.460 47.619 29.70 17.26 0.00 2.43
360 361 1.135402 CATTAGTGCCGGCTCAAAACC 60.135 52.381 29.70 6.44 0.00 3.27
361 362 0.179015 TTAGTGCCGGCTCAAAACCA 60.179 50.000 29.70 2.35 0.00 3.67
362 363 0.179015 TAGTGCCGGCTCAAAACCAA 60.179 50.000 29.70 5.19 0.00 3.67
363 364 1.040339 AGTGCCGGCTCAAAACCAAA 61.040 50.000 29.70 0.00 0.00 3.28
364 365 0.874175 GTGCCGGCTCAAAACCAAAC 60.874 55.000 29.70 9.41 0.00 2.93
365 366 1.300620 GCCGGCTCAAAACCAAACC 60.301 57.895 22.15 0.00 0.00 3.27
366 367 1.007849 CCGGCTCAAAACCAAACCG 60.008 57.895 0.00 0.00 40.30 4.44
367 368 1.007849 CGGCTCAAAACCAAACCGG 60.008 57.895 0.00 0.00 42.50 5.28
368 369 1.300620 GGCTCAAAACCAAACCGGC 60.301 57.895 0.00 0.00 39.03 6.13
369 370 1.439644 GCTCAAAACCAAACCGGCA 59.560 52.632 0.00 0.00 39.03 5.69
370 371 0.874175 GCTCAAAACCAAACCGGCAC 60.874 55.000 0.00 0.00 39.03 5.01
371 372 0.744281 CTCAAAACCAAACCGGCACT 59.256 50.000 0.00 0.00 39.03 4.40
372 373 1.950909 CTCAAAACCAAACCGGCACTA 59.049 47.619 0.00 0.00 39.03 2.74
373 374 2.359531 CTCAAAACCAAACCGGCACTAA 59.640 45.455 0.00 0.00 39.03 2.24
374 375 2.959707 TCAAAACCAAACCGGCACTAAT 59.040 40.909 0.00 0.00 39.03 1.73
375 376 3.056304 CAAAACCAAACCGGCACTAATG 58.944 45.455 0.00 0.00 39.03 1.90
376 377 1.989706 AACCAAACCGGCACTAATGT 58.010 45.000 0.00 0.00 39.03 2.71
377 378 1.243902 ACCAAACCGGCACTAATGTG 58.756 50.000 0.00 0.00 46.37 3.21
378 379 1.243902 CCAAACCGGCACTAATGTGT 58.756 50.000 0.00 0.00 45.44 3.72
379 380 1.199097 CCAAACCGGCACTAATGTGTC 59.801 52.381 0.00 0.00 45.44 3.67
380 381 2.151202 CAAACCGGCACTAATGTGTCT 58.849 47.619 0.00 0.00 45.84 3.41
381 382 2.094762 AACCGGCACTAATGTGTCTC 57.905 50.000 0.00 0.00 45.84 3.36
382 383 0.973632 ACCGGCACTAATGTGTCTCA 59.026 50.000 0.00 0.00 45.84 3.27
383 384 1.555075 ACCGGCACTAATGTGTCTCAT 59.445 47.619 0.00 0.00 45.84 2.90
384 385 2.764010 ACCGGCACTAATGTGTCTCATA 59.236 45.455 0.00 0.00 45.84 2.15
385 386 3.388024 ACCGGCACTAATGTGTCTCATAT 59.612 43.478 0.00 0.00 45.84 1.78
386 387 4.141711 ACCGGCACTAATGTGTCTCATATT 60.142 41.667 0.00 0.00 45.84 1.28
387 388 5.069914 ACCGGCACTAATGTGTCTCATATTA 59.930 40.000 0.00 0.00 45.84 0.98
388 389 5.635280 CCGGCACTAATGTGTCTCATATTAG 59.365 44.000 17.96 17.96 45.84 1.73
389 390 5.635280 CGGCACTAATGTGTCTCATATTAGG 59.365 44.000 21.16 14.61 44.30 2.69
390 391 6.525629 GGCACTAATGTGTCTCATATTAGGT 58.474 40.000 21.16 10.60 44.30 3.08
391 392 6.647067 GGCACTAATGTGTCTCATATTAGGTC 59.353 42.308 21.16 14.91 44.30 3.85
392 393 6.647067 GCACTAATGTGTCTCATATTAGGTCC 59.353 42.308 21.16 11.04 44.30 4.46
393 394 7.472100 GCACTAATGTGTCTCATATTAGGTCCT 60.472 40.741 21.16 0.00 44.30 3.85
394 395 8.424918 CACTAATGTGTCTCATATTAGGTCCTT 58.575 37.037 21.16 6.12 44.30 3.36
395 396 8.993424 ACTAATGTGTCTCATATTAGGTCCTTT 58.007 33.333 21.16 5.64 44.30 3.11
396 397 9.838339 CTAATGTGTCTCATATTAGGTCCTTTT 57.162 33.333 14.21 0.00 39.88 2.27
398 399 8.738645 ATGTGTCTCATATTAGGTCCTTTTTC 57.261 34.615 0.00 0.00 34.67 2.29
399 400 7.918076 TGTGTCTCATATTAGGTCCTTTTTCT 58.082 34.615 0.00 0.00 0.00 2.52
400 401 9.042450 TGTGTCTCATATTAGGTCCTTTTTCTA 57.958 33.333 0.00 0.00 0.00 2.10
401 402 9.315525 GTGTCTCATATTAGGTCCTTTTTCTAC 57.684 37.037 0.00 0.00 0.00 2.59
402 403 9.268282 TGTCTCATATTAGGTCCTTTTTCTACT 57.732 33.333 0.00 0.00 0.00 2.57
410 411 4.778427 AGGTCCTTTTTCTACTAGTGAGGG 59.222 45.833 5.39 0.00 0.00 4.30
441 443 6.812160 ACTAAAGGAGTGCTACAAAATAGTCG 59.188 38.462 0.00 0.00 36.87 4.18
443 445 3.195825 AGGAGTGCTACAAAATAGTCGCT 59.804 43.478 0.00 0.00 32.07 4.93
446 448 3.684788 AGTGCTACAAAATAGTCGCTTGG 59.315 43.478 0.00 0.00 32.07 3.61
458 460 8.742554 AAATAGTCGCTTGGAATTTAAAGTTG 57.257 30.769 0.00 0.00 0.00 3.16
492 494 4.929808 TCTAGCTTTCAATCTCAACCGTTC 59.070 41.667 0.00 0.00 0.00 3.95
521 523 1.202687 TCGAACATCCAGGGCATCATC 60.203 52.381 0.00 0.00 0.00 2.92
525 527 1.144503 ACATCCAGGGCATCATCTTCC 59.855 52.381 0.00 0.00 0.00 3.46
532 534 0.465705 GGCATCATCTTCCACCTCGA 59.534 55.000 0.00 0.00 0.00 4.04
537 539 2.808919 TCATCTTCCACCTCGACTCTT 58.191 47.619 0.00 0.00 0.00 2.85
550 552 2.299297 TCGACTCTTTTCTTCCTCACCC 59.701 50.000 0.00 0.00 0.00 4.61
556 558 3.583086 TCTTTTCTTCCTCACCCGATCTT 59.417 43.478 0.00 0.00 0.00 2.40
557 559 4.041691 TCTTTTCTTCCTCACCCGATCTTT 59.958 41.667 0.00 0.00 0.00 2.52
558 560 4.367039 TTTCTTCCTCACCCGATCTTTT 57.633 40.909 0.00 0.00 0.00 2.27
566 568 1.302949 CCCGATCTTTTCCCCAGCA 59.697 57.895 0.00 0.00 0.00 4.41
585 587 4.329545 CCACCACAGACCACCGGG 62.330 72.222 6.32 0.00 41.29 5.73
674 676 4.640690 ACCTCCTCCCACTGCCGT 62.641 66.667 0.00 0.00 0.00 5.68
678 680 3.390521 CCTCCCACTGCCGTGCTA 61.391 66.667 2.22 0.00 39.86 3.49
681 683 4.778143 CCCACTGCCGTGCTACCC 62.778 72.222 2.22 0.00 39.86 3.69
708 710 2.448542 GCCATCCCTCTAGCCCCA 60.449 66.667 0.00 0.00 0.00 4.96
815 819 1.003696 CCTCCCCTCAGGTTGTTTCTC 59.996 57.143 0.00 0.00 36.75 2.87
816 820 1.003696 CTCCCCTCAGGTTGTTTCTCC 59.996 57.143 0.00 0.00 36.75 3.71
817 821 0.038310 CCCCTCAGGTTGTTTCTCCC 59.962 60.000 0.00 0.00 0.00 4.30
818 822 1.068121 CCCTCAGGTTGTTTCTCCCT 58.932 55.000 0.00 0.00 0.00 4.20
819 823 1.425448 CCCTCAGGTTGTTTCTCCCTT 59.575 52.381 0.00 0.00 0.00 3.95
820 824 2.553247 CCCTCAGGTTGTTTCTCCCTTC 60.553 54.545 0.00 0.00 0.00 3.46
821 825 2.106511 CCTCAGGTTGTTTCTCCCTTCA 59.893 50.000 0.00 0.00 0.00 3.02
822 826 3.435026 CCTCAGGTTGTTTCTCCCTTCAA 60.435 47.826 0.00 0.00 0.00 2.69
823 827 3.551846 TCAGGTTGTTTCTCCCTTCAAC 58.448 45.455 0.00 0.00 39.24 3.18
824 828 3.202151 TCAGGTTGTTTCTCCCTTCAACT 59.798 43.478 0.00 0.00 39.69 3.16
825 829 4.410883 TCAGGTTGTTTCTCCCTTCAACTA 59.589 41.667 0.00 0.00 39.69 2.24
826 830 4.757149 CAGGTTGTTTCTCCCTTCAACTAG 59.243 45.833 0.00 0.00 39.69 2.57
827 831 4.658901 AGGTTGTTTCTCCCTTCAACTAGA 59.341 41.667 0.00 0.00 39.69 2.43
828 832 5.310857 AGGTTGTTTCTCCCTTCAACTAGAT 59.689 40.000 0.00 0.00 39.69 1.98
829 833 6.004574 GGTTGTTTCTCCCTTCAACTAGATT 58.995 40.000 0.00 0.00 39.69 2.40
830 834 6.490381 GGTTGTTTCTCCCTTCAACTAGATTT 59.510 38.462 0.00 0.00 39.69 2.17
831 835 7.014326 GGTTGTTTCTCCCTTCAACTAGATTTT 59.986 37.037 0.00 0.00 39.69 1.82
832 836 8.414003 GTTGTTTCTCCCTTCAACTAGATTTTT 58.586 33.333 0.00 0.00 37.67 1.94
855 859 4.382541 GGGGGCCCCTTCAACCAG 62.383 72.222 39.92 0.00 41.34 4.00
867 871 4.392940 CCTTCAACCAGAATTGACTGACT 58.607 43.478 0.00 0.00 38.31 3.41
883 887 5.234329 TGACTGACTCAAATTCGAAAGTCAC 59.766 40.000 20.98 14.92 42.26 3.67
909 913 5.004821 CGACTGACATGTAGCTATTGTGAAC 59.995 44.000 14.82 4.32 0.00 3.18
1078 1082 4.885907 AGCACATAAATAGAGCATGCAACT 59.114 37.500 21.98 19.86 34.03 3.16
1088 1092 9.573133 AAATAGAGCATGCAACTTAATTTGTAC 57.427 29.630 21.98 0.00 0.00 2.90
1220 1224 3.255642 GCTCTTGCAACCTGTTTCCATAA 59.744 43.478 0.00 0.00 39.41 1.90
1227 1231 5.757320 TGCAACCTGTTTCCATAAATTTGTG 59.243 36.000 7.89 7.89 0.00 3.33
1231 1241 8.356657 CAACCTGTTTCCATAAATTTGTGTAGA 58.643 33.333 13.13 2.63 0.00 2.59
1239 1250 7.815641 TCCATAAATTTGTGTAGACATGTGTG 58.184 34.615 1.15 0.00 30.13 3.82
1242 1253 9.759259 CATAAATTTGTGTAGACATGTGTGTAG 57.241 33.333 1.15 0.00 39.09 2.74
1282 1293 7.310113 CCTTAGTTTTGTAGAGACCAGACATCT 60.310 40.741 0.00 0.00 0.00 2.90
1290 1301 5.450818 AGAGACCAGACATCTAGAAGAGT 57.549 43.478 1.17 0.00 0.00 3.24
1303 1314 1.701847 AGAAGAGTGAGGGCATGTGTT 59.298 47.619 0.00 0.00 0.00 3.32
1378 1389 1.371183 CGGCAGGAACAGGAGTCAA 59.629 57.895 0.00 0.00 0.00 3.18
1384 1395 0.980423 GGAACAGGAGTCAAGAGGCT 59.020 55.000 0.00 0.00 0.00 4.58
1543 1554 1.325338 CCGTACGTATTTGCTTTCCGG 59.675 52.381 15.21 0.00 0.00 5.14
1554 1565 0.611714 GCTTTCCGGTCTCCTGGTTA 59.388 55.000 0.00 0.00 0.00 2.85
1573 1584 5.570973 TGGTTAATTTGCATTCATTCGTTCG 59.429 36.000 0.00 0.00 0.00 3.95
1644 1659 3.950254 CGCTCGCGGATAGACGGT 61.950 66.667 6.13 0.00 35.56 4.83
1710 1725 3.022287 CGTGCCTTGCAGAAACGT 58.978 55.556 5.46 0.00 40.08 3.99
1713 1728 0.380378 GTGCCTTGCAGAAACGTCAA 59.620 50.000 0.00 0.00 40.08 3.18
1732 1747 0.746659 AACCAAGGTTCAAGCAGCAC 59.253 50.000 0.00 0.00 32.09 4.40
1826 1841 0.612174 TCACTAAGCTCCTCCGCTGT 60.612 55.000 0.00 0.00 40.79 4.40
1875 1890 1.731720 CCTAAACCTCTGCTGTGCTC 58.268 55.000 0.00 0.00 0.00 4.26
1953 1968 6.655003 GTCTATCCAAGGTCACAAGATTGAAA 59.345 38.462 0.00 0.00 0.00 2.69
2041 2059 7.325660 TGAAATGAGCTTTTGATCCATCTAC 57.674 36.000 0.00 0.00 33.14 2.59
2055 2073 5.353394 TCCATCTACGGAAGCTGTTATTT 57.647 39.130 0.00 0.00 29.93 1.40
2099 2117 3.955471 TGGAAGCTGTAGGAATTGGAAG 58.045 45.455 0.00 0.00 0.00 3.46
2104 2122 6.374417 AAGCTGTAGGAATTGGAAGTTCTA 57.626 37.500 2.25 0.00 0.00 2.10
2143 2161 2.378038 TCAAACTTGGGCTATGCATCC 58.622 47.619 0.19 0.00 0.00 3.51
2151 2169 1.270465 GGGCTATGCATCCCAAATTGC 60.270 52.381 16.81 0.00 42.18 3.56
2183 2201 6.509418 TGCGGATTAAGAATGCTTACTTTT 57.491 33.333 0.00 0.00 36.37 2.27
2247 2265 1.027792 ACAACAAGTTTGGTCCGCGT 61.028 50.000 4.92 0.00 0.00 6.01
2253 2271 1.298041 GTTTGGTCCGCGTGTTGTG 60.298 57.895 4.92 0.00 0.00 3.33
2260 2278 3.353029 CGCGTGTTGTGGCCATGA 61.353 61.111 9.72 0.00 0.00 3.07
2317 2335 1.153628 CATCGGGTCGTTGTCCTCC 60.154 63.158 0.00 0.00 0.00 4.30
2340 2358 1.470098 GTGTAGCGACCTAAAGTCCGA 59.530 52.381 0.00 0.00 43.08 4.55
2358 2376 1.749635 CGATAGGGAACTCAGGTCCGA 60.750 57.143 1.50 0.00 43.67 4.55
2362 2380 1.080705 GGAACTCAGGTCCGACGTG 60.081 63.158 13.89 13.89 35.48 4.49
2377 2395 1.891150 GACGTGACCCTAGTCTTCCAA 59.109 52.381 0.00 0.00 43.91 3.53
2438 2456 1.839994 TGATAGCCTCTCCCAAACTGG 59.160 52.381 0.00 0.00 37.25 4.00
2459 2477 1.539388 TGTTGCGCCACATTTAAGAGG 59.461 47.619 10.70 0.00 0.00 3.69
2479 2497 3.108376 GGACTTCCTTACATGGGTCTCT 58.892 50.000 0.00 0.00 0.00 3.10
2480 2498 4.016479 AGGACTTCCTTACATGGGTCTCTA 60.016 45.833 0.00 0.00 46.09 2.43
2572 2594 2.557869 TGGTACCTTGCCCTATGTTCT 58.442 47.619 14.36 0.00 0.00 3.01
2595 2617 5.491070 TGATAAGCCTCCCATCAATTATCG 58.509 41.667 0.00 0.00 34.07 2.92
2606 2628 6.036735 TCCCATCAATTATCGACGAAAAACTC 59.963 38.462 0.00 0.00 0.00 3.01
2611 2633 9.968743 ATCAATTATCGACGAAAAACTCTAAAC 57.031 29.630 0.00 0.00 0.00 2.01
2613 2635 9.250986 CAATTATCGACGAAAAACTCTAAACAG 57.749 33.333 0.00 0.00 0.00 3.16
2667 2689 1.549950 GGGGAGAAGGGATTTGTGCAA 60.550 52.381 0.00 0.00 0.00 4.08
2668 2690 1.821136 GGGAGAAGGGATTTGTGCAAG 59.179 52.381 0.00 0.00 0.00 4.01
2759 2787 3.710722 CGCCACCAAGCTCCTCCT 61.711 66.667 0.00 0.00 0.00 3.69
2768 2796 1.209261 CAAGCTCCTCCTTCCCTCTTC 59.791 57.143 0.00 0.00 0.00 2.87
2777 2805 1.002544 CCTTCCCTCTTCTTTGTCGCT 59.997 52.381 0.00 0.00 0.00 4.93
2783 2811 0.106708 TCTTCTTTGTCGCTGCTGGT 59.893 50.000 0.00 0.00 0.00 4.00
2785 2813 1.165907 TTCTTTGTCGCTGCTGGTGG 61.166 55.000 0.00 0.00 0.00 4.61
2805 2833 0.957362 GCTCAGTCTGGCAAAGCTTT 59.043 50.000 5.69 5.69 0.00 3.51
2845 2873 0.662970 GCTAGCTTCATCTCCTCGCG 60.663 60.000 7.70 0.00 0.00 5.87
2852 2880 1.215382 CATCTCCTCGCGTGTTGGA 59.785 57.895 5.77 9.21 0.00 3.53
2855 2883 4.373116 TCCTCGCGTGTTGGAGCC 62.373 66.667 5.77 0.00 0.00 4.70
2858 2886 3.989698 CTCGCGTGTTGGAGCCGAT 62.990 63.158 5.77 0.00 0.00 4.18
2884 2912 1.913762 AACTGCTACGAGCCAGGGT 60.914 57.895 0.00 0.00 41.51 4.34
2900 2928 2.051345 GTGTGGCGCGGAAAACTG 60.051 61.111 8.83 0.00 0.00 3.16
2919 2947 2.774951 GAACCACGACGCGACATCG 61.775 63.158 15.93 15.36 45.17 3.84
2945 2973 4.459331 CGTTTGCGGCGTGATGGG 62.459 66.667 9.37 0.00 0.00 4.00
2948 2976 1.743623 TTTGCGGCGTGATGGGTAG 60.744 57.895 9.37 0.00 0.00 3.18
2950 2978 4.530857 GCGGCGTGATGGGTAGCT 62.531 66.667 9.37 0.00 0.00 3.32
2964 2992 0.905337 GTAGCTCAGAGGGTGGTGGT 60.905 60.000 0.00 0.00 0.00 4.16
2965 2993 0.178903 TAGCTCAGAGGGTGGTGGTT 60.179 55.000 0.00 0.00 0.00 3.67
2966 2994 0.178903 AGCTCAGAGGGTGGTGGTTA 60.179 55.000 0.00 0.00 0.00 2.85
2967 2995 0.912486 GCTCAGAGGGTGGTGGTTAT 59.088 55.000 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.923356 TGTCAAGATTTGAAGGCCCC 58.077 50.000 0.00 0.00 42.15 5.80
1 2 4.541973 ATTTGTCAAGATTTGAAGGCCC 57.458 40.909 0.00 0.00 42.15 5.80
2 3 6.293571 CCAAAATTTGTCAAGATTTGAAGGCC 60.294 38.462 19.08 0.00 42.15 5.19
3 4 6.293571 CCCAAAATTTGTCAAGATTTGAAGGC 60.294 38.462 19.08 0.00 42.15 4.35
4 5 6.293571 GCCCAAAATTTGTCAAGATTTGAAGG 60.294 38.462 19.08 15.15 42.15 3.46
5 6 6.260493 TGCCCAAAATTTGTCAAGATTTGAAG 59.740 34.615 19.08 13.60 42.15 3.02
6 7 6.118170 TGCCCAAAATTTGTCAAGATTTGAA 58.882 32.000 19.08 7.98 42.15 2.69
7 8 5.678583 TGCCCAAAATTTGTCAAGATTTGA 58.321 33.333 19.08 4.79 37.33 2.69
8 9 6.374565 TTGCCCAAAATTTGTCAAGATTTG 57.625 33.333 4.92 13.93 0.00 2.32
9 10 7.401955 TTTTGCCCAAAATTTGTCAAGATTT 57.598 28.000 4.92 0.00 35.57 2.17
10 11 7.585579 ATTTTGCCCAAAATTTGTCAAGATT 57.414 28.000 11.98 0.00 45.67 2.40
22 23 4.450053 CTCCTCACAAATTTTGCCCAAAA 58.550 39.130 9.04 8.45 43.48 2.44
23 24 3.743899 GCTCCTCACAAATTTTGCCCAAA 60.744 43.478 9.04 0.00 0.00 3.28
24 25 2.224257 GCTCCTCACAAATTTTGCCCAA 60.224 45.455 9.04 0.00 0.00 4.12
25 26 1.344114 GCTCCTCACAAATTTTGCCCA 59.656 47.619 9.04 0.00 0.00 5.36
26 27 1.620323 AGCTCCTCACAAATTTTGCCC 59.380 47.619 9.04 0.00 0.00 5.36
27 28 2.669391 CGAGCTCCTCACAAATTTTGCC 60.669 50.000 8.47 0.00 0.00 4.52
28 29 2.226437 TCGAGCTCCTCACAAATTTTGC 59.774 45.455 8.47 0.00 0.00 3.68
29 30 3.120060 CCTCGAGCTCCTCACAAATTTTG 60.120 47.826 6.99 7.59 0.00 2.44
30 31 3.077359 CCTCGAGCTCCTCACAAATTTT 58.923 45.455 6.99 0.00 0.00 1.82
31 32 2.303022 TCCTCGAGCTCCTCACAAATTT 59.697 45.455 6.99 0.00 0.00 1.82
32 33 1.902508 TCCTCGAGCTCCTCACAAATT 59.097 47.619 6.99 0.00 0.00 1.82
33 34 1.480137 CTCCTCGAGCTCCTCACAAAT 59.520 52.381 6.99 0.00 0.00 2.32
34 35 0.891373 CTCCTCGAGCTCCTCACAAA 59.109 55.000 6.99 0.00 0.00 2.83
35 36 0.038310 TCTCCTCGAGCTCCTCACAA 59.962 55.000 6.99 0.00 0.00 3.33
36 37 0.393673 CTCTCCTCGAGCTCCTCACA 60.394 60.000 6.99 0.00 31.99 3.58
37 38 0.107410 TCTCTCCTCGAGCTCCTCAC 60.107 60.000 6.99 0.00 39.70 3.51
38 39 0.180171 CTCTCTCCTCGAGCTCCTCA 59.820 60.000 6.99 0.00 39.70 3.86
39 40 0.535102 CCTCTCTCCTCGAGCTCCTC 60.535 65.000 6.99 0.00 39.70 3.71
40 41 1.531748 CCTCTCTCCTCGAGCTCCT 59.468 63.158 6.99 0.00 39.70 3.69
41 42 1.528309 CCCTCTCTCCTCGAGCTCC 60.528 68.421 6.99 0.00 39.70 4.70
42 43 1.528309 CCCCTCTCTCCTCGAGCTC 60.528 68.421 6.99 2.73 39.70 4.09
43 44 2.600731 CCCCTCTCTCCTCGAGCT 59.399 66.667 6.99 0.00 39.70 4.09
44 45 2.520741 CCCCCTCTCTCCTCGAGC 60.521 72.222 6.99 0.00 39.70 5.03
45 46 0.467290 CTTCCCCCTCTCTCCTCGAG 60.467 65.000 5.13 5.13 41.30 4.04
46 47 0.919780 TCTTCCCCCTCTCTCCTCGA 60.920 60.000 0.00 0.00 0.00 4.04
47 48 0.033011 TTCTTCCCCCTCTCTCCTCG 60.033 60.000 0.00 0.00 0.00 4.63
48 49 1.273324 TGTTCTTCCCCCTCTCTCCTC 60.273 57.143 0.00 0.00 0.00 3.71
49 50 0.793617 TGTTCTTCCCCCTCTCTCCT 59.206 55.000 0.00 0.00 0.00 3.69
50 51 1.199615 CTGTTCTTCCCCCTCTCTCC 58.800 60.000 0.00 0.00 0.00 3.71
51 52 2.107366 CTCTGTTCTTCCCCCTCTCTC 58.893 57.143 0.00 0.00 0.00 3.20
52 53 1.273552 CCTCTGTTCTTCCCCCTCTCT 60.274 57.143 0.00 0.00 0.00 3.10
53 54 1.199615 CCTCTGTTCTTCCCCCTCTC 58.800 60.000 0.00 0.00 0.00 3.20
54 55 0.793617 TCCTCTGTTCTTCCCCCTCT 59.206 55.000 0.00 0.00 0.00 3.69
55 56 1.557371 CTTCCTCTGTTCTTCCCCCTC 59.443 57.143 0.00 0.00 0.00 4.30
56 57 1.132365 ACTTCCTCTGTTCTTCCCCCT 60.132 52.381 0.00 0.00 0.00 4.79
57 58 1.003696 CACTTCCTCTGTTCTTCCCCC 59.996 57.143 0.00 0.00 0.00 5.40
58 59 1.978580 TCACTTCCTCTGTTCTTCCCC 59.021 52.381 0.00 0.00 0.00 4.81
59 60 2.027653 CCTCACTTCCTCTGTTCTTCCC 60.028 54.545 0.00 0.00 0.00 3.97
60 61 2.027653 CCCTCACTTCCTCTGTTCTTCC 60.028 54.545 0.00 0.00 0.00 3.46
61 62 2.027653 CCCCTCACTTCCTCTGTTCTTC 60.028 54.545 0.00 0.00 0.00 2.87
62 63 1.981495 CCCCTCACTTCCTCTGTTCTT 59.019 52.381 0.00 0.00 0.00 2.52
63 64 1.150135 TCCCCTCACTTCCTCTGTTCT 59.850 52.381 0.00 0.00 0.00 3.01
64 65 1.645710 TCCCCTCACTTCCTCTGTTC 58.354 55.000 0.00 0.00 0.00 3.18
65 66 2.118403 TTCCCCTCACTTCCTCTGTT 57.882 50.000 0.00 0.00 0.00 3.16
66 67 1.981495 CTTTCCCCTCACTTCCTCTGT 59.019 52.381 0.00 0.00 0.00 3.41
67 68 1.280421 CCTTTCCCCTCACTTCCTCTG 59.720 57.143 0.00 0.00 0.00 3.35
68 69 1.662686 CCTTTCCCCTCACTTCCTCT 58.337 55.000 0.00 0.00 0.00 3.69
69 70 0.621082 CCCTTTCCCCTCACTTCCTC 59.379 60.000 0.00 0.00 0.00 3.71
70 71 0.846870 CCCCTTTCCCCTCACTTCCT 60.847 60.000 0.00 0.00 0.00 3.36
71 72 0.845102 TCCCCTTTCCCCTCACTTCC 60.845 60.000 0.00 0.00 0.00 3.46
72 73 1.004862 CTTCCCCTTTCCCCTCACTTC 59.995 57.143 0.00 0.00 0.00 3.01
73 74 1.076438 CTTCCCCTTTCCCCTCACTT 58.924 55.000 0.00 0.00 0.00 3.16
74 75 0.196118 TCTTCCCCTTTCCCCTCACT 59.804 55.000 0.00 0.00 0.00 3.41
75 76 1.073098 TTCTTCCCCTTTCCCCTCAC 58.927 55.000 0.00 0.00 0.00 3.51
76 77 1.073098 GTTCTTCCCCTTTCCCCTCA 58.927 55.000 0.00 0.00 0.00 3.86
77 78 1.004862 CTGTTCTTCCCCTTTCCCCTC 59.995 57.143 0.00 0.00 0.00 4.30
78 79 1.076438 CTGTTCTTCCCCTTTCCCCT 58.924 55.000 0.00 0.00 0.00 4.79
79 80 1.004862 CTCTGTTCTTCCCCTTTCCCC 59.995 57.143 0.00 0.00 0.00 4.81
80 81 1.705745 ACTCTGTTCTTCCCCTTTCCC 59.294 52.381 0.00 0.00 0.00 3.97
81 82 2.553247 CCACTCTGTTCTTCCCCTTTCC 60.553 54.545 0.00 0.00 0.00 3.13
82 83 2.784347 CCACTCTGTTCTTCCCCTTTC 58.216 52.381 0.00 0.00 0.00 2.62
83 84 1.202940 GCCACTCTGTTCTTCCCCTTT 60.203 52.381 0.00 0.00 0.00 3.11
84 85 0.402121 GCCACTCTGTTCTTCCCCTT 59.598 55.000 0.00 0.00 0.00 3.95
85 86 0.474660 AGCCACTCTGTTCTTCCCCT 60.475 55.000 0.00 0.00 0.00 4.79
86 87 0.035915 GAGCCACTCTGTTCTTCCCC 60.036 60.000 0.00 0.00 0.00 4.81
87 88 0.390472 CGAGCCACTCTGTTCTTCCC 60.390 60.000 0.00 0.00 0.00 3.97
88 89 0.390472 CCGAGCCACTCTGTTCTTCC 60.390 60.000 0.00 0.00 0.00 3.46
89 90 0.390472 CCCGAGCCACTCTGTTCTTC 60.390 60.000 0.00 0.00 0.00 2.87
90 91 1.674057 CCCGAGCCACTCTGTTCTT 59.326 57.895 0.00 0.00 0.00 2.52
91 92 2.286523 CCCCGAGCCACTCTGTTCT 61.287 63.158 0.00 0.00 0.00 3.01
92 93 2.266055 CCCCGAGCCACTCTGTTC 59.734 66.667 0.00 0.00 0.00 3.18
93 94 3.322466 CCCCCGAGCCACTCTGTT 61.322 66.667 0.00 0.00 0.00 3.16
107 108 0.622136 ACATAAACCCTTCGTCCCCC 59.378 55.000 0.00 0.00 0.00 5.40
108 109 2.739609 CGTACATAAACCCTTCGTCCCC 60.740 54.545 0.00 0.00 0.00 4.81
109 110 2.094026 ACGTACATAAACCCTTCGTCCC 60.094 50.000 0.00 0.00 0.00 4.46
110 111 3.182182 GACGTACATAAACCCTTCGTCC 58.818 50.000 0.00 0.00 39.73 4.79
111 112 2.848302 CGACGTACATAAACCCTTCGTC 59.152 50.000 0.00 0.00 41.36 4.20
112 113 2.487762 TCGACGTACATAAACCCTTCGT 59.512 45.455 0.00 0.00 0.00 3.85
113 114 2.848302 GTCGACGTACATAAACCCTTCG 59.152 50.000 0.00 0.00 0.00 3.79
114 115 3.119352 AGGTCGACGTACATAAACCCTTC 60.119 47.826 9.40 0.00 0.00 3.46
115 116 2.827921 AGGTCGACGTACATAAACCCTT 59.172 45.455 9.40 0.00 0.00 3.95
116 117 2.450476 AGGTCGACGTACATAAACCCT 58.550 47.619 9.40 0.00 0.00 4.34
117 118 2.947448 AGGTCGACGTACATAAACCC 57.053 50.000 9.40 0.00 0.00 4.11
118 119 5.402398 ACTAAAGGTCGACGTACATAAACC 58.598 41.667 11.72 0.00 0.00 3.27
119 120 6.469275 GGTACTAAAGGTCGACGTACATAAAC 59.531 42.308 23.23 13.47 33.84 2.01
120 121 6.551736 GGTACTAAAGGTCGACGTACATAAA 58.448 40.000 23.23 4.69 33.84 1.40
121 122 5.220586 CGGTACTAAAGGTCGACGTACATAA 60.221 44.000 23.23 5.95 33.84 1.90
122 123 4.270084 CGGTACTAAAGGTCGACGTACATA 59.730 45.833 23.23 12.67 33.84 2.29
123 124 3.063997 CGGTACTAAAGGTCGACGTACAT 59.936 47.826 23.23 12.30 33.84 2.29
124 125 2.415168 CGGTACTAAAGGTCGACGTACA 59.585 50.000 23.23 10.74 33.84 2.90
125 126 2.223044 CCGGTACTAAAGGTCGACGTAC 60.223 54.545 11.72 15.19 0.00 3.67
126 127 2.006888 CCGGTACTAAAGGTCGACGTA 58.993 52.381 11.72 3.67 0.00 3.57
127 128 0.804989 CCGGTACTAAAGGTCGACGT 59.195 55.000 9.92 7.31 0.00 4.34
128 129 0.804989 ACCGGTACTAAAGGTCGACG 59.195 55.000 4.49 0.00 31.69 5.12
129 130 2.729156 CGAACCGGTACTAAAGGTCGAC 60.729 54.545 8.00 7.13 37.26 4.20
130 131 1.468520 CGAACCGGTACTAAAGGTCGA 59.531 52.381 8.00 0.00 37.26 4.20
131 132 1.200020 ACGAACCGGTACTAAAGGTCG 59.800 52.381 8.00 13.90 37.26 4.79
132 133 2.599659 CACGAACCGGTACTAAAGGTC 58.400 52.381 8.00 0.00 37.26 3.85
133 134 1.337167 GCACGAACCGGTACTAAAGGT 60.337 52.381 8.00 0.00 40.50 3.50
134 135 1.353076 GCACGAACCGGTACTAAAGG 58.647 55.000 8.00 0.00 0.00 3.11
135 136 1.337074 TGGCACGAACCGGTACTAAAG 60.337 52.381 8.00 0.00 0.00 1.85
136 137 0.678395 TGGCACGAACCGGTACTAAA 59.322 50.000 8.00 0.00 0.00 1.85
137 138 0.038343 GTGGCACGAACCGGTACTAA 60.038 55.000 8.00 0.00 0.00 2.24
138 139 1.586028 GTGGCACGAACCGGTACTA 59.414 57.895 8.00 0.00 0.00 1.82
139 140 2.341176 GTGGCACGAACCGGTACT 59.659 61.111 8.00 0.00 0.00 2.73
140 141 3.107661 CGTGGCACGAACCGGTAC 61.108 66.667 34.85 0.00 46.05 3.34
149 150 2.198906 TAGTACCGGTTCGTGGCACG 62.199 60.000 32.75 32.75 44.19 5.34
150 151 0.038343 TTAGTACCGGTTCGTGGCAC 60.038 55.000 15.04 7.79 0.00 5.01
151 152 0.678395 TTTAGTACCGGTTCGTGGCA 59.322 50.000 15.04 0.00 0.00 4.92
152 153 1.067635 TCTTTAGTACCGGTTCGTGGC 60.068 52.381 15.04 0.00 0.00 5.01
153 154 3.184541 CATCTTTAGTACCGGTTCGTGG 58.815 50.000 15.04 1.20 0.00 4.94
154 155 2.601763 GCATCTTTAGTACCGGTTCGTG 59.398 50.000 15.04 4.09 0.00 4.35
155 156 2.494870 AGCATCTTTAGTACCGGTTCGT 59.505 45.455 15.04 0.00 0.00 3.85
156 157 2.858344 CAGCATCTTTAGTACCGGTTCG 59.142 50.000 15.04 0.00 0.00 3.95
157 158 3.118884 TCCAGCATCTTTAGTACCGGTTC 60.119 47.826 15.04 8.12 0.00 3.62
158 159 2.835764 TCCAGCATCTTTAGTACCGGTT 59.164 45.455 15.04 0.00 0.00 4.44
159 160 2.167900 GTCCAGCATCTTTAGTACCGGT 59.832 50.000 13.98 13.98 0.00 5.28
160 161 2.798499 CGTCCAGCATCTTTAGTACCGG 60.798 54.545 0.00 0.00 0.00 5.28
161 162 2.460918 CGTCCAGCATCTTTAGTACCG 58.539 52.381 0.00 0.00 0.00 4.02
162 163 2.483188 CCCGTCCAGCATCTTTAGTACC 60.483 54.545 0.00 0.00 0.00 3.34
163 164 2.822764 CCCGTCCAGCATCTTTAGTAC 58.177 52.381 0.00 0.00 0.00 2.73
164 165 1.138266 GCCCGTCCAGCATCTTTAGTA 59.862 52.381 0.00 0.00 0.00 1.82
165 166 0.107654 GCCCGTCCAGCATCTTTAGT 60.108 55.000 0.00 0.00 0.00 2.24
166 167 0.815615 GGCCCGTCCAGCATCTTTAG 60.816 60.000 0.00 0.00 34.01 1.85
167 168 1.223487 GGCCCGTCCAGCATCTTTA 59.777 57.895 0.00 0.00 34.01 1.85
168 169 2.044946 GGCCCGTCCAGCATCTTT 60.045 61.111 0.00 0.00 34.01 2.52
169 170 4.115199 GGGCCCGTCCAGCATCTT 62.115 66.667 5.69 0.00 36.21 2.40
178 179 4.083862 GTCAGTCTGGGGCCCGTC 62.084 72.222 19.83 10.73 0.00 4.79
179 180 4.954118 TGTCAGTCTGGGGCCCGT 62.954 66.667 19.83 0.00 0.00 5.28
180 181 3.636231 TTGTCAGTCTGGGGCCCG 61.636 66.667 19.83 13.18 0.00 6.13
181 182 2.034221 GTTGTCAGTCTGGGGCCC 59.966 66.667 18.17 18.17 0.00 5.80
182 183 1.600916 GTGTTGTCAGTCTGGGGCC 60.601 63.158 0.00 0.00 0.00 5.80
183 184 1.600916 GGTGTTGTCAGTCTGGGGC 60.601 63.158 0.00 0.00 0.00 5.80
184 185 1.073199 GGGTGTTGTCAGTCTGGGG 59.927 63.158 0.00 0.00 0.00 4.96
185 186 0.250467 CAGGGTGTTGTCAGTCTGGG 60.250 60.000 0.00 0.00 0.00 4.45
186 187 0.886490 GCAGGGTGTTGTCAGTCTGG 60.886 60.000 0.00 0.00 0.00 3.86
187 188 0.886490 GGCAGGGTGTTGTCAGTCTG 60.886 60.000 0.00 0.00 0.00 3.51
188 189 1.344953 TGGCAGGGTGTTGTCAGTCT 61.345 55.000 0.00 0.00 0.00 3.24
189 190 1.148273 TGGCAGGGTGTTGTCAGTC 59.852 57.895 0.00 0.00 0.00 3.51
190 191 1.152963 GTGGCAGGGTGTTGTCAGT 60.153 57.895 0.00 0.00 32.51 3.41
191 192 1.898574 GGTGGCAGGGTGTTGTCAG 60.899 63.158 0.00 0.00 32.51 3.51
192 193 2.005606 ATGGTGGCAGGGTGTTGTCA 62.006 55.000 0.00 0.00 0.00 3.58
193 194 1.228552 ATGGTGGCAGGGTGTTGTC 60.229 57.895 0.00 0.00 0.00 3.18
194 195 1.228552 GATGGTGGCAGGGTGTTGT 60.229 57.895 0.00 0.00 0.00 3.32
195 196 1.978617 GGATGGTGGCAGGGTGTTG 60.979 63.158 0.00 0.00 0.00 3.33
196 197 2.142292 GAGGATGGTGGCAGGGTGTT 62.142 60.000 0.00 0.00 0.00 3.32
197 198 2.532715 AGGATGGTGGCAGGGTGT 60.533 61.111 0.00 0.00 0.00 4.16
198 199 1.856539 AAGAGGATGGTGGCAGGGTG 61.857 60.000 0.00 0.00 0.00 4.61
199 200 1.142688 AAAGAGGATGGTGGCAGGGT 61.143 55.000 0.00 0.00 0.00 4.34
200 201 0.918983 TAAAGAGGATGGTGGCAGGG 59.081 55.000 0.00 0.00 0.00 4.45
201 202 1.561542 ACTAAAGAGGATGGTGGCAGG 59.438 52.381 0.00 0.00 0.00 4.85
202 203 3.432326 GGTACTAAAGAGGATGGTGGCAG 60.432 52.174 0.00 0.00 0.00 4.85
203 204 2.504175 GGTACTAAAGAGGATGGTGGCA 59.496 50.000 0.00 0.00 0.00 4.92
204 205 2.483188 CGGTACTAAAGAGGATGGTGGC 60.483 54.545 0.00 0.00 0.00 5.01
205 206 2.102588 CCGGTACTAAAGAGGATGGTGG 59.897 54.545 0.00 0.00 0.00 4.61
206 207 2.764572 ACCGGTACTAAAGAGGATGGTG 59.235 50.000 4.49 0.00 28.51 4.17
207 208 3.111741 ACCGGTACTAAAGAGGATGGT 57.888 47.619 4.49 0.00 0.00 3.55
208 209 3.490419 CGAACCGGTACTAAAGAGGATGG 60.490 52.174 8.00 0.00 0.00 3.51
209 210 3.129988 ACGAACCGGTACTAAAGAGGATG 59.870 47.826 8.00 0.00 0.00 3.51
210 211 3.129988 CACGAACCGGTACTAAAGAGGAT 59.870 47.826 8.00 0.00 0.00 3.24
211 212 2.489329 CACGAACCGGTACTAAAGAGGA 59.511 50.000 8.00 0.00 0.00 3.71
212 213 2.416431 CCACGAACCGGTACTAAAGAGG 60.416 54.545 8.00 0.17 0.00 3.69
213 214 2.872370 CCACGAACCGGTACTAAAGAG 58.128 52.381 8.00 0.00 0.00 2.85
214 215 1.067635 GCCACGAACCGGTACTAAAGA 60.068 52.381 8.00 0.00 0.00 2.52
215 216 1.337074 TGCCACGAACCGGTACTAAAG 60.337 52.381 8.00 0.00 0.00 1.85
216 217 0.678395 TGCCACGAACCGGTACTAAA 59.322 50.000 8.00 0.00 0.00 1.85
217 218 0.038343 GTGCCACGAACCGGTACTAA 60.038 55.000 8.00 0.00 36.33 2.24
218 219 1.586028 GTGCCACGAACCGGTACTA 59.414 57.895 8.00 0.00 36.33 1.82
219 220 2.341176 GTGCCACGAACCGGTACT 59.659 61.111 8.00 0.00 36.33 2.73
220 221 3.107661 CGTGCCACGAACCGGTAC 61.108 66.667 12.85 0.00 46.05 3.34
229 230 2.198906 TAGTACCGGTTCGTGCCACG 62.199 60.000 15.04 11.80 44.19 4.94
230 231 0.174162 ATAGTACCGGTTCGTGCCAC 59.826 55.000 15.04 1.99 0.00 5.01
231 232 1.677576 CTATAGTACCGGTTCGTGCCA 59.322 52.381 15.04 0.00 0.00 4.92
232 233 1.000938 CCTATAGTACCGGTTCGTGCC 60.001 57.143 15.04 0.00 0.00 5.01
233 234 1.678101 ACCTATAGTACCGGTTCGTGC 59.322 52.381 15.04 0.00 0.00 5.34
234 235 3.957468 GAACCTATAGTACCGGTTCGTG 58.043 50.000 15.04 0.51 44.86 4.35
238 239 1.683385 GGCGAACCTATAGTACCGGTT 59.317 52.381 15.04 0.00 43.32 4.44
239 240 1.322442 GGCGAACCTATAGTACCGGT 58.678 55.000 13.98 13.98 0.00 5.28
240 241 1.000938 GTGGCGAACCTATAGTACCGG 60.001 57.143 0.00 0.00 36.63 5.28
241 242 1.334419 CGTGGCGAACCTATAGTACCG 60.334 57.143 0.00 0.25 36.63 4.02
242 243 1.949525 TCGTGGCGAACCTATAGTACC 59.050 52.381 0.00 0.00 36.63 3.34
243 244 3.698029 TTCGTGGCGAACCTATAGTAC 57.302 47.619 0.00 0.00 41.05 2.73
253 254 1.240641 TAGTACCGGTTCGTGGCGAA 61.241 55.000 15.04 0.00 43.75 4.70
254 255 1.031571 ATAGTACCGGTTCGTGGCGA 61.032 55.000 15.04 0.00 0.00 5.54
255 256 0.662619 TATAGTACCGGTTCGTGGCG 59.337 55.000 15.04 0.00 0.00 5.69
256 257 1.000938 CCTATAGTACCGGTTCGTGGC 60.001 57.143 15.04 0.00 0.00 5.01
257 258 2.301346 ACCTATAGTACCGGTTCGTGG 58.699 52.381 15.04 12.34 0.00 4.94
258 259 3.957468 GAACCTATAGTACCGGTTCGTG 58.043 50.000 15.04 0.51 44.86 4.35
262 263 1.683385 GGCGAACCTATAGTACCGGTT 59.317 52.381 15.04 0.00 43.32 4.44
263 264 1.322442 GGCGAACCTATAGTACCGGT 58.678 55.000 13.98 13.98 0.00 5.28
264 265 1.000938 GTGGCGAACCTATAGTACCGG 60.001 57.143 0.00 0.00 36.63 5.28
265 266 1.334419 CGTGGCGAACCTATAGTACCG 60.334 57.143 0.00 0.25 36.63 4.02
266 267 1.949525 TCGTGGCGAACCTATAGTACC 59.050 52.381 0.00 0.00 36.63 3.34
267 268 3.698029 TTCGTGGCGAACCTATAGTAC 57.302 47.619 0.00 0.00 41.05 2.73
277 278 1.240641 TAGTACCGGTTCGTGGCGAA 61.241 55.000 15.04 0.00 43.75 4.70
278 279 1.240641 TTAGTACCGGTTCGTGGCGA 61.241 55.000 15.04 0.00 0.00 5.54
279 280 0.179129 ATTAGTACCGGTTCGTGGCG 60.179 55.000 15.04 0.00 0.00 5.69
280 281 1.135024 TCATTAGTACCGGTTCGTGGC 60.135 52.381 15.04 0.00 0.00 5.01
281 282 2.424601 TCTCATTAGTACCGGTTCGTGG 59.575 50.000 15.04 0.29 0.00 4.94
282 283 3.770263 TCTCATTAGTACCGGTTCGTG 57.230 47.619 15.04 10.08 0.00 4.35
283 284 4.441079 CCATTCTCATTAGTACCGGTTCGT 60.441 45.833 15.04 0.00 0.00 3.85
284 285 4.049186 CCATTCTCATTAGTACCGGTTCG 58.951 47.826 15.04 0.00 0.00 3.95
285 286 3.808174 GCCATTCTCATTAGTACCGGTTC 59.192 47.826 15.04 8.12 0.00 3.62
286 287 3.433173 GGCCATTCTCATTAGTACCGGTT 60.433 47.826 15.04 0.00 0.00 4.44
287 288 2.104281 GGCCATTCTCATTAGTACCGGT 59.896 50.000 13.98 13.98 0.00 5.28
288 289 2.767505 GGCCATTCTCATTAGTACCGG 58.232 52.381 0.00 0.00 0.00 5.28
289 290 2.404215 CGGCCATTCTCATTAGTACCG 58.596 52.381 2.24 0.00 0.00 4.02
290 291 2.767505 CCGGCCATTCTCATTAGTACC 58.232 52.381 2.24 0.00 0.00 3.34
291 292 2.143925 GCCGGCCATTCTCATTAGTAC 58.856 52.381 18.11 0.00 0.00 2.73
292 293 2.047061 AGCCGGCCATTCTCATTAGTA 58.953 47.619 26.15 0.00 0.00 1.82
293 294 0.839946 AGCCGGCCATTCTCATTAGT 59.160 50.000 26.15 0.00 0.00 2.24
294 295 2.693069 CTAGCCGGCCATTCTCATTAG 58.307 52.381 26.15 11.13 0.00 1.73
295 296 1.270839 GCTAGCCGGCCATTCTCATTA 60.271 52.381 26.15 4.22 0.00 1.90
296 297 0.536006 GCTAGCCGGCCATTCTCATT 60.536 55.000 26.15 2.97 0.00 2.57
297 298 1.072159 GCTAGCCGGCCATTCTCAT 59.928 57.895 26.15 3.86 0.00 2.90
298 299 2.505982 GCTAGCCGGCCATTCTCA 59.494 61.111 26.15 0.00 0.00 3.27
309 310 2.818274 CGGTTCCAACGGCTAGCC 60.818 66.667 24.75 24.75 0.00 3.93
310 311 2.818274 CCGGTTCCAACGGCTAGC 60.818 66.667 6.04 6.04 45.34 3.42
316 317 2.094078 TCCAATAGTACCGGTTCCAACG 60.094 50.000 15.04 0.00 0.00 4.10
317 318 3.264947 GTCCAATAGTACCGGTTCCAAC 58.735 50.000 15.04 4.32 0.00 3.77
318 319 2.905085 TGTCCAATAGTACCGGTTCCAA 59.095 45.455 15.04 0.00 0.00 3.53
319 320 2.234414 GTGTCCAATAGTACCGGTTCCA 59.766 50.000 15.04 0.00 0.00 3.53
320 321 2.234414 TGTGTCCAATAGTACCGGTTCC 59.766 50.000 15.04 3.66 0.00 3.62
321 322 3.598019 TGTGTCCAATAGTACCGGTTC 57.402 47.619 15.04 8.12 0.00 3.62
322 323 4.563140 AATGTGTCCAATAGTACCGGTT 57.437 40.909 15.04 0.00 0.00 4.44
323 324 4.713321 ACTAATGTGTCCAATAGTACCGGT 59.287 41.667 13.98 13.98 35.90 5.28
324 325 5.047847 CACTAATGTGTCCAATAGTACCGG 58.952 45.833 0.00 0.00 35.56 5.28
325 326 4.506654 GCACTAATGTGTCCAATAGTACCG 59.493 45.833 0.00 0.00 45.44 4.02
326 327 4.814771 GGCACTAATGTGTCCAATAGTACC 59.185 45.833 0.00 0.00 45.44 3.34
327 328 4.506654 CGGCACTAATGTGTCCAATAGTAC 59.493 45.833 0.00 0.00 45.29 2.73
328 329 4.442332 CCGGCACTAATGTGTCCAATAGTA 60.442 45.833 0.00 0.00 45.29 1.82
329 330 3.531538 CGGCACTAATGTGTCCAATAGT 58.468 45.455 0.00 0.00 45.29 2.12
330 331 2.872245 CCGGCACTAATGTGTCCAATAG 59.128 50.000 0.00 0.00 45.29 1.73
331 332 2.912771 CCGGCACTAATGTGTCCAATA 58.087 47.619 0.00 0.00 45.29 1.90
332 333 1.750193 CCGGCACTAATGTGTCCAAT 58.250 50.000 0.00 0.00 45.29 3.16
333 334 0.958382 GCCGGCACTAATGTGTCCAA 60.958 55.000 24.80 0.00 45.29 3.53
334 335 1.376683 GCCGGCACTAATGTGTCCA 60.377 57.895 24.80 0.00 45.29 4.02
335 336 1.078426 AGCCGGCACTAATGTGTCC 60.078 57.895 31.54 0.00 45.29 4.02
336 337 0.391130 TGAGCCGGCACTAATGTGTC 60.391 55.000 31.54 14.56 45.44 3.67
337 338 0.036164 TTGAGCCGGCACTAATGTGT 59.964 50.000 31.54 3.33 45.44 3.72
338 339 1.164411 TTTGAGCCGGCACTAATGTG 58.836 50.000 31.54 0.00 46.37 3.21
339 340 1.539827 GTTTTGAGCCGGCACTAATGT 59.460 47.619 31.54 5.22 0.00 2.71
340 341 1.135402 GGTTTTGAGCCGGCACTAATG 60.135 52.381 31.54 0.00 0.00 1.90
341 342 1.173913 GGTTTTGAGCCGGCACTAAT 58.826 50.000 31.54 7.13 0.00 1.73
342 343 0.179015 TGGTTTTGAGCCGGCACTAA 60.179 50.000 31.54 22.93 0.00 2.24
343 344 0.179015 TTGGTTTTGAGCCGGCACTA 60.179 50.000 31.54 17.63 0.00 2.74
344 345 1.040339 TTTGGTTTTGAGCCGGCACT 61.040 50.000 31.54 9.09 0.00 4.40
345 346 0.874175 GTTTGGTTTTGAGCCGGCAC 60.874 55.000 31.54 24.60 0.00 5.01
346 347 1.439644 GTTTGGTTTTGAGCCGGCA 59.560 52.632 31.54 5.56 0.00 5.69
347 348 1.300620 GGTTTGGTTTTGAGCCGGC 60.301 57.895 21.89 21.89 0.00 6.13
348 349 1.007849 CGGTTTGGTTTTGAGCCGG 60.008 57.895 0.00 0.00 36.05 6.13
349 350 1.007849 CCGGTTTGGTTTTGAGCCG 60.008 57.895 0.00 0.00 38.99 5.52
350 351 1.300620 GCCGGTTTGGTTTTGAGCC 60.301 57.895 1.90 0.00 41.21 4.70
351 352 0.874175 GTGCCGGTTTGGTTTTGAGC 60.874 55.000 1.90 0.00 41.21 4.26
352 353 0.744281 AGTGCCGGTTTGGTTTTGAG 59.256 50.000 1.90 0.00 41.21 3.02
353 354 2.054232 TAGTGCCGGTTTGGTTTTGA 57.946 45.000 1.90 0.00 41.21 2.69
354 355 2.873133 TTAGTGCCGGTTTGGTTTTG 57.127 45.000 1.90 0.00 41.21 2.44
355 356 2.696187 ACATTAGTGCCGGTTTGGTTTT 59.304 40.909 1.90 0.00 41.21 2.43
356 357 2.035321 CACATTAGTGCCGGTTTGGTTT 59.965 45.455 1.90 0.00 39.21 3.27
357 358 1.611491 CACATTAGTGCCGGTTTGGTT 59.389 47.619 1.90 0.00 39.21 3.67
358 359 1.243902 CACATTAGTGCCGGTTTGGT 58.756 50.000 1.90 0.00 39.21 3.67
369 370 8.554490 AAGGACCTAATATGAGACACATTAGT 57.446 34.615 0.00 0.00 40.07 2.24
370 371 9.838339 AAAAGGACCTAATATGAGACACATTAG 57.162 33.333 0.00 0.00 40.07 1.73
372 373 9.178758 GAAAAAGGACCTAATATGAGACACATT 57.821 33.333 0.00 0.00 40.07 2.71
373 374 8.552296 AGAAAAAGGACCTAATATGAGACACAT 58.448 33.333 0.00 0.00 42.39 3.21
374 375 7.918076 AGAAAAAGGACCTAATATGAGACACA 58.082 34.615 0.00 0.00 0.00 3.72
375 376 9.315525 GTAGAAAAAGGACCTAATATGAGACAC 57.684 37.037 0.00 0.00 0.00 3.67
376 377 9.268282 AGTAGAAAAAGGACCTAATATGAGACA 57.732 33.333 0.00 0.00 0.00 3.41
383 384 9.198475 CCTCACTAGTAGAAAAAGGACCTAATA 57.802 37.037 3.59 0.00 0.00 0.98
384 385 7.125963 CCCTCACTAGTAGAAAAAGGACCTAAT 59.874 40.741 3.59 0.00 0.00 1.73
385 386 6.439692 CCCTCACTAGTAGAAAAAGGACCTAA 59.560 42.308 3.59 0.00 0.00 2.69
386 387 5.956563 CCCTCACTAGTAGAAAAAGGACCTA 59.043 44.000 3.59 0.00 0.00 3.08
387 388 4.778427 CCCTCACTAGTAGAAAAAGGACCT 59.222 45.833 3.59 0.00 0.00 3.85
388 389 4.776308 TCCCTCACTAGTAGAAAAAGGACC 59.224 45.833 3.59 0.00 0.00 4.46
389 390 5.997384 TCCCTCACTAGTAGAAAAAGGAC 57.003 43.478 3.59 0.00 0.00 3.85
390 391 7.569599 ATTTCCCTCACTAGTAGAAAAAGGA 57.430 36.000 3.59 0.79 30.97 3.36
391 392 9.163899 GTTATTTCCCTCACTAGTAGAAAAAGG 57.836 37.037 3.59 4.81 30.97 3.11
392 393 9.945904 AGTTATTTCCCTCACTAGTAGAAAAAG 57.054 33.333 3.59 0.00 30.97 2.27
397 398 9.198475 CCTTTAGTTATTTCCCTCACTAGTAGA 57.802 37.037 3.59 0.00 0.00 2.59
398 399 9.198475 TCCTTTAGTTATTTCCCTCACTAGTAG 57.802 37.037 0.00 0.00 0.00 2.57
399 400 9.198475 CTCCTTTAGTTATTTCCCTCACTAGTA 57.802 37.037 0.00 0.00 0.00 1.82
400 401 7.679025 ACTCCTTTAGTTATTTCCCTCACTAGT 59.321 37.037 0.00 0.00 33.35 2.57
401 402 7.982354 CACTCCTTTAGTTATTTCCCTCACTAG 59.018 40.741 0.00 0.00 35.76 2.57
402 403 7.580882 GCACTCCTTTAGTTATTTCCCTCACTA 60.581 40.741 0.00 0.00 35.76 2.74
403 404 6.712276 CACTCCTTTAGTTATTTCCCTCACT 58.288 40.000 0.00 0.00 35.76 3.41
404 405 5.354513 GCACTCCTTTAGTTATTTCCCTCAC 59.645 44.000 0.00 0.00 35.76 3.51
405 406 5.250774 AGCACTCCTTTAGTTATTTCCCTCA 59.749 40.000 0.00 0.00 35.76 3.86
406 407 5.746284 AGCACTCCTTTAGTTATTTCCCTC 58.254 41.667 0.00 0.00 35.76 4.30
421 422 3.195825 AGCGACTATTTTGTAGCACTCCT 59.804 43.478 0.00 0.00 40.25 3.69
436 438 6.483974 TGACAACTTTAAATTCCAAGCGACTA 59.516 34.615 0.00 0.00 0.00 2.59
441 443 5.625311 CGACTGACAACTTTAAATTCCAAGC 59.375 40.000 0.00 0.00 0.00 4.01
443 445 6.928979 TCGACTGACAACTTTAAATTCCAA 57.071 33.333 0.00 0.00 0.00 3.53
458 460 6.533367 AGATTGAAAGCTAGAAATCGACTGAC 59.467 38.462 0.00 0.00 34.84 3.51
472 474 2.480419 CGAACGGTTGAGATTGAAAGCT 59.520 45.455 0.00 0.00 0.00 3.74
492 494 3.055591 CCTGGATGTTCGATCTTGATCG 58.944 50.000 22.45 22.45 44.73 3.69
503 505 2.653234 AGATGATGCCCTGGATGTTC 57.347 50.000 0.00 0.00 0.00 3.18
511 513 0.842635 GAGGTGGAAGATGATGCCCT 59.157 55.000 0.00 0.00 0.00 5.19
521 523 3.669251 AGAAAAGAGTCGAGGTGGAAG 57.331 47.619 0.00 0.00 0.00 3.46
525 527 3.005897 TGAGGAAGAAAAGAGTCGAGGTG 59.994 47.826 0.00 0.00 0.00 4.00
532 534 2.326428 TCGGGTGAGGAAGAAAAGAGT 58.674 47.619 0.00 0.00 0.00 3.24
537 539 4.324267 GAAAAGATCGGGTGAGGAAGAAA 58.676 43.478 0.00 0.00 0.00 2.52
550 552 1.379642 GGCTGCTGGGGAAAAGATCG 61.380 60.000 0.00 0.00 0.00 3.69
556 558 3.506743 TGGTGGCTGCTGGGGAAA 61.507 61.111 0.00 0.00 0.00 3.13
557 559 4.284550 GTGGTGGCTGCTGGGGAA 62.285 66.667 0.00 0.00 0.00 3.97
566 568 3.941188 CGGTGGTCTGTGGTGGCT 61.941 66.667 0.00 0.00 0.00 4.75
640 642 3.387947 TTTCGGGGAGAGCGGGAC 61.388 66.667 0.00 0.00 0.00 4.46
641 643 3.387947 GTTTCGGGGAGAGCGGGA 61.388 66.667 0.00 0.00 0.00 5.14
642 644 4.468689 GGTTTCGGGGAGAGCGGG 62.469 72.222 0.00 0.00 0.00 6.13
643 645 3.372554 GAGGTTTCGGGGAGAGCGG 62.373 68.421 0.00 0.00 0.00 5.52
644 646 2.184579 GAGGTTTCGGGGAGAGCG 59.815 66.667 0.00 0.00 0.00 5.03
645 647 1.962321 GAGGAGGTTTCGGGGAGAGC 61.962 65.000 0.00 0.00 0.00 4.09
646 648 1.331399 GGAGGAGGTTTCGGGGAGAG 61.331 65.000 0.00 0.00 0.00 3.20
655 657 2.895424 CGGCAGTGGGAGGAGGTTT 61.895 63.158 0.00 0.00 0.00 3.27
691 693 2.448542 TGGGGCTAGAGGGATGGC 60.449 66.667 0.00 0.00 0.00 4.40
770 774 3.521126 CCCCATCATCTATCTTAGGGTGG 59.479 52.174 0.00 0.00 32.90 4.61
804 808 3.953542 AGTTGAAGGGAGAAACAACCT 57.046 42.857 0.00 0.00 42.05 3.50
838 842 4.382541 CTGGTTGAAGGGGCCCCC 62.383 72.222 38.68 23.99 45.90 5.40
839 843 2.168272 ATTCTGGTTGAAGGGGCCCC 62.168 60.000 35.90 35.90 38.18 5.80
840 844 0.252239 AATTCTGGTTGAAGGGGCCC 60.252 55.000 17.12 17.12 38.18 5.80
841 845 0.897621 CAATTCTGGTTGAAGGGGCC 59.102 55.000 0.00 0.00 38.18 5.80
842 846 1.546029 GTCAATTCTGGTTGAAGGGGC 59.454 52.381 0.00 0.00 39.61 5.80
855 859 7.355778 ACTTTCGAATTTGAGTCAGTCAATTC 58.644 34.615 14.74 14.74 44.89 2.17
867 871 2.097104 GTCGCGTGACTTTCGAATTTGA 60.097 45.455 21.55 0.00 42.08 2.69
883 887 2.407521 ATAGCTACATGTCAGTCGCG 57.592 50.000 0.00 0.00 35.57 5.87
1078 1082 9.661563 CTACTTAGACACATGGGTACAAATTAA 57.338 33.333 0.00 0.00 0.00 1.40
1220 1224 8.445275 TTTCTACACACATGTCTACACAAATT 57.555 30.769 0.00 0.00 40.48 1.82
1227 1231 7.652300 TGTCAATTTCTACACACATGTCTAC 57.348 36.000 0.00 0.00 40.48 2.59
1231 1241 6.972328 GTGTTTGTCAATTTCTACACACATGT 59.028 34.615 11.04 0.00 38.24 3.21
1239 1250 9.797556 AAAACTAAGGTGTTTGTCAATTTCTAC 57.202 29.630 0.00 0.00 39.71 2.59
1242 1253 8.474006 ACAAAACTAAGGTGTTTGTCAATTTC 57.526 30.769 0.00 0.00 39.71 2.17
1282 1293 2.540383 ACACATGCCCTCACTCTTCTA 58.460 47.619 0.00 0.00 0.00 2.10
1290 1301 2.350895 CGGGAACACATGCCCTCA 59.649 61.111 4.80 0.00 42.40 3.86
1369 1380 0.108898 CGACAGCCTCTTGACTCCTG 60.109 60.000 0.00 0.00 0.00 3.86
1378 1389 3.991924 ATCCCCTGCGACAGCCTCT 62.992 63.158 0.00 0.00 44.33 3.69
1420 1431 2.202676 CACCTCCTCGCTCTTCGC 60.203 66.667 0.00 0.00 38.27 4.70
1543 1554 5.643379 TGAATGCAAATTAACCAGGAGAC 57.357 39.130 0.00 0.00 0.00 3.36
1554 1565 3.836949 AGCGAACGAATGAATGCAAATT 58.163 36.364 0.00 0.00 0.00 1.82
1573 1584 2.165845 AGAAAGAAATGCATGGCTGAGC 59.834 45.455 0.00 0.00 0.00 4.26
1644 1659 3.797353 GCGCCCCTTGATCCTCCA 61.797 66.667 0.00 0.00 0.00 3.86
1710 1725 1.408702 GCTGCTTGAACCTTGGTTTGA 59.591 47.619 6.49 0.00 0.00 2.69
1713 1728 0.746659 GTGCTGCTTGAACCTTGGTT 59.253 50.000 4.52 4.52 0.00 3.67
1732 1747 3.188786 GCACCGCACTTCCGCTAG 61.189 66.667 0.00 0.00 0.00 3.42
1784 1799 1.062121 CCATCCACCTCCTCCTTCCTA 60.062 57.143 0.00 0.00 0.00 2.94
1875 1890 0.676782 GGATGGTTGGAAGGGTCACG 60.677 60.000 0.00 0.00 0.00 4.35
2025 2043 3.002759 GCTTCCGTAGATGGATCAAAAGC 59.997 47.826 0.00 0.00 38.00 3.51
2099 2117 1.383523 GCCCATGAGTTGGCTAGAAC 58.616 55.000 3.67 0.00 44.97 3.01
2143 2161 3.119531 TCCGCAAAGATACAGCAATTTGG 60.120 43.478 0.00 0.00 34.09 3.28
2151 2169 6.017605 AGCATTCTTAATCCGCAAAGATACAG 60.018 38.462 0.00 0.00 32.05 2.74
2247 2265 2.371841 ACTCTACTTCATGGCCACAACA 59.628 45.455 8.16 0.00 0.00 3.33
2253 2271 1.834263 ACTCCACTCTACTTCATGGCC 59.166 52.381 0.00 0.00 31.87 5.36
2256 2274 4.569966 GCATTCACTCCACTCTACTTCATG 59.430 45.833 0.00 0.00 0.00 3.07
2260 2278 2.906389 TGGCATTCACTCCACTCTACTT 59.094 45.455 0.00 0.00 0.00 2.24
2307 2325 1.429463 GCTACACAAGGAGGACAACG 58.571 55.000 0.00 0.00 0.00 4.10
2317 2335 3.251571 GGACTTTAGGTCGCTACACAAG 58.748 50.000 0.00 0.00 45.35 3.16
2340 2358 1.777941 GTCGGACCTGAGTTCCCTAT 58.222 55.000 0.00 0.00 0.00 2.57
2347 2365 3.352524 GTCACGTCGGACCTGAGT 58.647 61.111 9.61 0.00 0.00 3.41
2358 2376 2.005370 TTGGAAGACTAGGGTCACGT 57.995 50.000 0.00 0.00 44.36 4.49
2362 2380 5.823045 CCATAAACATTGGAAGACTAGGGTC 59.177 44.000 0.00 0.00 38.33 4.46
2432 2450 1.391157 ATGTGGCGCAACACCAGTTT 61.391 50.000 22.32 0.00 40.62 2.66
2438 2456 2.584791 CTCTTAAATGTGGCGCAACAC 58.415 47.619 22.32 15.06 41.68 3.32
2459 2477 5.740513 GCATAGAGACCCATGTAAGGAAGTC 60.741 48.000 0.00 0.00 0.00 3.01
2572 2594 5.248248 TCGATAATTGATGGGAGGCTTATCA 59.752 40.000 6.10 6.10 0.00 2.15
2595 2617 7.534239 CCAAATAGCTGTTTAGAGTTTTTCGTC 59.466 37.037 8.23 0.00 0.00 4.20
2667 2689 2.430694 GGGTGGTTTTCTGTTTTCTGCT 59.569 45.455 0.00 0.00 0.00 4.24
2668 2690 2.167487 TGGGTGGTTTTCTGTTTTCTGC 59.833 45.455 0.00 0.00 0.00 4.26
2710 2732 3.691342 TTCCCTCAGGTCGCCGTG 61.691 66.667 0.00 0.00 0.00 4.94
2719 2741 2.501610 GCGCTAGGGTTCCCTCAG 59.498 66.667 14.24 10.85 37.64 3.35
2720 2742 3.458163 CGCGCTAGGGTTCCCTCA 61.458 66.667 14.24 0.89 37.64 3.86
2759 2787 1.878102 GCAGCGACAAAGAAGAGGGAA 60.878 52.381 0.00 0.00 0.00 3.97
2768 2796 2.620112 CCCACCAGCAGCGACAAAG 61.620 63.158 0.00 0.00 0.00 2.77
2777 2805 2.527624 AGACTGAGCCCACCAGCA 60.528 61.111 0.00 0.00 35.14 4.41
2783 2811 1.073722 CTTTGCCAGACTGAGCCCA 59.926 57.895 3.32 0.00 0.00 5.36
2785 2813 0.892814 AAGCTTTGCCAGACTGAGCC 60.893 55.000 3.32 0.00 33.96 4.70
2790 2818 0.947244 CGACAAAGCTTTGCCAGACT 59.053 50.000 33.72 16.98 41.79 3.24
2825 2853 0.387202 GCGAGGAGATGAAGCTAGCA 59.613 55.000 18.83 0.00 0.00 3.49
2828 2856 0.382158 CACGCGAGGAGATGAAGCTA 59.618 55.000 15.93 0.00 0.00 3.32
2845 2873 3.499737 CCGCATCGGCTCCAACAC 61.500 66.667 0.00 0.00 41.17 3.32
2855 2883 2.100031 TAGCAGTTGCACCGCATCG 61.100 57.895 6.90 0.00 45.16 3.84
2858 2886 3.041351 CGTAGCAGTTGCACCGCA 61.041 61.111 6.90 0.00 45.16 5.69
2863 2891 1.374631 CTGGCTCGTAGCAGTTGCA 60.375 57.895 6.90 0.00 44.75 4.08
2867 2895 2.283966 ACCCTGGCTCGTAGCAGT 60.284 61.111 8.71 0.00 44.75 4.40
2884 2912 3.283684 CCAGTTTTCCGCGCCACA 61.284 61.111 0.00 0.00 0.00 4.17
2895 2923 2.241880 CGCGTCGTGGTTCCAGTTT 61.242 57.895 0.00 0.00 0.00 2.66
2900 2928 2.431942 ATGTCGCGTCGTGGTTCC 60.432 61.111 5.77 0.00 0.00 3.62
2922 2950 4.605967 ACGCCGCAAACGCACTTG 62.606 61.111 0.00 0.00 38.22 3.16
2937 2965 0.387202 CCTCTGAGCTACCCATCACG 59.613 60.000 0.00 0.00 0.00 4.35
2945 2973 0.905337 ACCACCACCCTCTGAGCTAC 60.905 60.000 0.00 0.00 0.00 3.58
2948 2976 0.912486 ATAACCACCACCCTCTGAGC 59.088 55.000 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.