Multiple sequence alignment - TraesCS5B01G155800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G155800 chr5B 100.000 4260 0 0 1 4260 287793758 287798017 0.000000e+00 7867.0
1 TraesCS5B01G155800 chr5D 95.270 3615 127 17 672 4260 254832877 254829281 0.000000e+00 5688.0
2 TraesCS5B01G155800 chr5D 89.124 331 19 6 251 574 254833576 254833256 3.090000e-106 396.0
3 TraesCS5B01G155800 chr5D 81.197 117 9 5 139 243 254833728 254833613 9.820000e-12 82.4
4 TraesCS5B01G155800 chr5A 93.546 3393 115 47 244 3590 338232856 338229522 0.000000e+00 4957.0
5 TraesCS5B01G155800 chr5A 93.997 683 26 4 3593 4260 338229491 338228809 0.000000e+00 1020.0
6 TraesCS5B01G155800 chr7A 86.885 61 7 1 9 68 548357843 548357783 2.750000e-07 67.6
7 TraesCS5B01G155800 chr2B 92.857 42 2 1 7 47 166462816 166462775 4.600000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G155800 chr5B 287793758 287798017 4259 False 7867.000000 7867 100.000000 1 4260 1 chr5B.!!$F1 4259
1 TraesCS5B01G155800 chr5D 254829281 254833728 4447 True 2055.466667 5688 88.530333 139 4260 3 chr5D.!!$R1 4121
2 TraesCS5B01G155800 chr5A 338228809 338232856 4047 True 2988.500000 4957 93.771500 244 4260 2 chr5A.!!$R1 4016

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 0.037326 GTCGACAGGATTGGTGCTGA 60.037 55.000 11.55 0.0 45.73 4.26 F
99 100 0.037590 ACGGGCAATTAGGTGCTTCA 59.962 50.000 0.00 0.0 44.31 3.02 F
663 721 0.600255 CTTGTTGGTTCTCGCGGAGT 60.600 55.000 6.13 0.0 0.00 3.85 F
801 1148 0.661552 ACACGATACATACGCTCGCT 59.338 50.000 0.00 0.0 35.89 4.93 F
2619 2993 1.061131 CGAAACTAGCCAACATGAGCG 59.939 52.381 0.00 0.0 0.00 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1728 2093 1.079503 CTGGTTGCTCTAAAGGCGTC 58.920 55.000 0.00 0.00 0.00 5.19 R
1875 2241 1.202348 GGGGCTGAAAACCTTTGATCG 59.798 52.381 0.00 0.00 0.00 3.69 R
2071 2444 4.837860 ACCTCAATTTTCATAGGTTTGCCA 59.162 37.500 0.00 0.00 39.32 4.92 R
2702 3076 0.696143 TTTGGTCCTGGTCCTGGTCA 60.696 55.000 14.11 10.99 0.00 4.02 R
3774 4187 1.566018 GGCGGTTGTCAAGTCCTTCG 61.566 60.000 0.00 0.00 0.00 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.106439 TGCATTAAAATATGGTGGGTGTAAG 57.894 36.000 0.00 0.00 0.00 2.34
25 26 6.097554 TGCATTAAAATATGGTGGGTGTAAGG 59.902 38.462 0.00 0.00 0.00 2.69
26 27 6.097696 GCATTAAAATATGGTGGGTGTAAGGT 59.902 38.462 0.00 0.00 0.00 3.50
27 28 7.285858 GCATTAAAATATGGTGGGTGTAAGGTA 59.714 37.037 0.00 0.00 0.00 3.08
28 29 9.362151 CATTAAAATATGGTGGGTGTAAGGTAT 57.638 33.333 0.00 0.00 0.00 2.73
31 32 8.934023 AAAATATGGTGGGTGTAAGGTATATG 57.066 34.615 0.00 0.00 0.00 1.78
32 33 7.642094 AATATGGTGGGTGTAAGGTATATGT 57.358 36.000 0.00 0.00 0.00 2.29
33 34 5.562298 ATGGTGGGTGTAAGGTATATGTC 57.438 43.478 0.00 0.00 0.00 3.06
34 35 3.385433 TGGTGGGTGTAAGGTATATGTCG 59.615 47.826 0.00 0.00 0.00 4.35
35 36 3.638160 GGTGGGTGTAAGGTATATGTCGA 59.362 47.826 0.00 0.00 0.00 4.20
36 37 4.500375 GGTGGGTGTAAGGTATATGTCGAC 60.500 50.000 9.11 9.11 0.00 4.20
37 38 4.098349 GTGGGTGTAAGGTATATGTCGACA 59.902 45.833 22.48 22.48 0.00 4.35
38 39 4.340097 TGGGTGTAAGGTATATGTCGACAG 59.660 45.833 24.41 0.00 0.00 3.51
39 40 4.261909 GGGTGTAAGGTATATGTCGACAGG 60.262 50.000 24.41 0.00 0.00 4.00
40 41 4.581824 GGTGTAAGGTATATGTCGACAGGA 59.418 45.833 24.41 14.58 0.00 3.86
41 42 5.243283 GGTGTAAGGTATATGTCGACAGGAT 59.757 44.000 24.41 20.22 0.00 3.24
42 43 6.239232 GGTGTAAGGTATATGTCGACAGGATT 60.239 42.308 24.41 9.56 0.00 3.01
43 44 6.641314 GTGTAAGGTATATGTCGACAGGATTG 59.359 42.308 24.41 0.00 0.00 2.67
44 45 4.873746 AGGTATATGTCGACAGGATTGG 57.126 45.455 24.41 0.00 0.00 3.16
45 46 4.223953 AGGTATATGTCGACAGGATTGGT 58.776 43.478 24.41 7.61 0.00 3.67
46 47 4.039245 AGGTATATGTCGACAGGATTGGTG 59.961 45.833 24.41 0.00 0.00 4.17
47 48 2.309528 TATGTCGACAGGATTGGTGC 57.690 50.000 24.41 0.00 0.00 5.01
48 49 0.615331 ATGTCGACAGGATTGGTGCT 59.385 50.000 24.41 0.00 0.00 4.40
50 51 0.037326 GTCGACAGGATTGGTGCTGA 60.037 55.000 11.55 0.00 45.73 4.26
51 52 0.684535 TCGACAGGATTGGTGCTGAA 59.315 50.000 3.93 0.00 45.73 3.02
52 53 0.798776 CGACAGGATTGGTGCTGAAC 59.201 55.000 3.93 0.00 45.73 3.18
53 54 1.168714 GACAGGATTGGTGCTGAACC 58.831 55.000 0.00 0.00 45.73 3.62
68 69 7.413475 GTGCTGAACCACTAGAATATGTATG 57.587 40.000 0.00 0.00 33.02 2.39
69 70 6.986817 GTGCTGAACCACTAGAATATGTATGT 59.013 38.462 0.00 0.00 33.02 2.29
70 71 7.495934 GTGCTGAACCACTAGAATATGTATGTT 59.504 37.037 0.00 0.00 33.02 2.71
71 72 8.700973 TGCTGAACCACTAGAATATGTATGTTA 58.299 33.333 0.00 0.00 0.00 2.41
72 73 8.979574 GCTGAACCACTAGAATATGTATGTTAC 58.020 37.037 0.00 0.00 0.00 2.50
73 74 9.477484 CTGAACCACTAGAATATGTATGTTACC 57.523 37.037 0.00 0.00 0.00 2.85
74 75 8.139350 TGAACCACTAGAATATGTATGTTACCG 58.861 37.037 0.00 0.00 0.00 4.02
75 76 7.592885 ACCACTAGAATATGTATGTTACCGT 57.407 36.000 0.00 0.00 0.00 4.83
76 77 8.015185 ACCACTAGAATATGTATGTTACCGTT 57.985 34.615 0.00 0.00 0.00 4.44
77 78 7.924412 ACCACTAGAATATGTATGTTACCGTTG 59.076 37.037 0.00 0.00 0.00 4.10
78 79 7.095774 CCACTAGAATATGTATGTTACCGTTGC 60.096 40.741 0.00 0.00 0.00 4.17
79 80 7.436970 CACTAGAATATGTATGTTACCGTTGCA 59.563 37.037 0.00 0.00 0.00 4.08
80 81 7.982919 ACTAGAATATGTATGTTACCGTTGCAA 59.017 33.333 0.00 0.00 0.00 4.08
81 82 7.011828 AGAATATGTATGTTACCGTTGCAAC 57.988 36.000 19.89 19.89 0.00 4.17
95 96 1.153842 GCAACGGGCAATTAGGTGC 60.154 57.895 0.00 0.00 43.97 5.01
96 97 1.595093 GCAACGGGCAATTAGGTGCT 61.595 55.000 0.00 0.00 44.46 4.40
97 98 0.887933 CAACGGGCAATTAGGTGCTT 59.112 50.000 0.00 0.00 44.31 3.91
98 99 1.135402 CAACGGGCAATTAGGTGCTTC 60.135 52.381 0.00 0.00 44.31 3.86
99 100 0.037590 ACGGGCAATTAGGTGCTTCA 59.962 50.000 0.00 0.00 44.31 3.02
100 101 1.340991 ACGGGCAATTAGGTGCTTCAT 60.341 47.619 0.00 0.00 44.31 2.57
101 102 2.092646 ACGGGCAATTAGGTGCTTCATA 60.093 45.455 0.00 0.00 44.31 2.15
102 103 2.549754 CGGGCAATTAGGTGCTTCATAG 59.450 50.000 0.00 0.00 44.31 2.23
103 104 3.744214 CGGGCAATTAGGTGCTTCATAGA 60.744 47.826 0.00 0.00 44.31 1.98
104 105 4.401925 GGGCAATTAGGTGCTTCATAGAT 58.598 43.478 0.00 0.00 44.31 1.98
105 106 4.829492 GGGCAATTAGGTGCTTCATAGATT 59.171 41.667 0.00 0.00 44.31 2.40
106 107 5.302823 GGGCAATTAGGTGCTTCATAGATTT 59.697 40.000 0.00 0.00 44.31 2.17
107 108 6.211515 GGCAATTAGGTGCTTCATAGATTTG 58.788 40.000 0.00 0.00 44.31 2.32
108 109 5.689068 GCAATTAGGTGCTTCATAGATTTGC 59.311 40.000 0.00 0.00 41.51 3.68
109 110 6.681120 GCAATTAGGTGCTTCATAGATTTGCA 60.681 38.462 0.00 0.00 41.51 4.08
110 111 6.630444 ATTAGGTGCTTCATAGATTTGCAG 57.370 37.500 0.00 0.00 34.15 4.41
111 112 3.075866 GGTGCTTCATAGATTTGCAGC 57.924 47.619 0.00 0.00 43.12 5.25
112 113 2.686915 GGTGCTTCATAGATTTGCAGCT 59.313 45.455 7.98 0.00 45.14 4.24
113 114 3.488721 GGTGCTTCATAGATTTGCAGCTG 60.489 47.826 10.11 10.11 45.14 4.24
114 115 3.128242 GTGCTTCATAGATTTGCAGCTGT 59.872 43.478 16.64 0.00 36.90 4.40
115 116 3.376234 TGCTTCATAGATTTGCAGCTGTC 59.624 43.478 16.64 8.39 36.90 3.51
116 117 3.376234 GCTTCATAGATTTGCAGCTGTCA 59.624 43.478 16.64 11.11 33.76 3.58
117 118 4.142534 GCTTCATAGATTTGCAGCTGTCAA 60.143 41.667 16.64 16.47 33.76 3.18
118 119 5.620654 GCTTCATAGATTTGCAGCTGTCAAA 60.621 40.000 26.99 26.99 33.76 2.69
119 120 6.519679 TTCATAGATTTGCAGCTGTCAAAT 57.480 33.333 31.35 31.35 44.19 2.32
120 121 6.519679 TCATAGATTTGCAGCTGTCAAATT 57.480 33.333 31.36 25.36 42.30 1.82
121 122 6.927416 TCATAGATTTGCAGCTGTCAAATTT 58.073 32.000 31.36 28.95 42.30 1.82
122 123 6.809689 TCATAGATTTGCAGCTGTCAAATTTG 59.190 34.615 31.36 27.75 42.30 2.32
123 124 4.312443 AGATTTGCAGCTGTCAAATTTGG 58.688 39.130 31.36 3.60 42.30 3.28
124 125 3.540314 TTTGCAGCTGTCAAATTTGGT 57.460 38.095 23.52 0.00 0.00 3.67
125 126 2.512485 TGCAGCTGTCAAATTTGGTG 57.488 45.000 17.90 9.34 0.00 4.17
126 127 1.142474 GCAGCTGTCAAATTTGGTGC 58.858 50.000 17.90 15.00 44.50 5.01
127 128 1.269936 GCAGCTGTCAAATTTGGTGCT 60.270 47.619 17.90 19.08 46.35 4.40
128 129 2.804212 GCAGCTGTCAAATTTGGTGCTT 60.804 45.455 21.69 11.05 46.35 3.91
129 130 3.054878 CAGCTGTCAAATTTGGTGCTTC 58.945 45.455 21.69 8.48 0.00 3.86
130 131 2.694628 AGCTGTCAAATTTGGTGCTTCA 59.305 40.909 17.90 7.39 0.00 3.02
131 132 3.322828 AGCTGTCAAATTTGGTGCTTCAT 59.677 39.130 17.90 2.48 0.00 2.57
132 133 3.430895 GCTGTCAAATTTGGTGCTTCATG 59.569 43.478 17.90 0.00 0.00 3.07
133 134 4.796946 GCTGTCAAATTTGGTGCTTCATGA 60.797 41.667 17.90 0.00 0.00 3.07
134 135 5.273674 TGTCAAATTTGGTGCTTCATGAA 57.726 34.783 17.90 8.12 0.00 2.57
135 136 5.668471 TGTCAAATTTGGTGCTTCATGAAA 58.332 33.333 17.90 0.00 0.00 2.69
136 137 6.111382 TGTCAAATTTGGTGCTTCATGAAAA 58.889 32.000 17.90 0.00 0.00 2.29
137 138 6.596888 TGTCAAATTTGGTGCTTCATGAAAAA 59.403 30.769 17.90 7.12 0.00 1.94
143 144 4.885413 TGGTGCTTCATGAAAAATCCAAG 58.115 39.130 9.88 0.00 0.00 3.61
154 155 1.632589 AAATCCAAGCACCCTGGTTC 58.367 50.000 0.00 0.00 35.69 3.62
156 157 1.668826 ATCCAAGCACCCTGGTTCTA 58.331 50.000 0.00 0.00 35.69 2.10
165 166 3.691609 GCACCCTGGTTCTAGATTTCAAG 59.308 47.826 0.00 0.00 0.00 3.02
170 171 7.447238 CACCCTGGTTCTAGATTTCAAGTTAAA 59.553 37.037 0.00 0.00 0.00 1.52
182 183 9.403583 AGATTTCAAGTTAAACACTTAAGGACA 57.596 29.630 7.53 0.00 44.60 4.02
183 184 9.665264 GATTTCAAGTTAAACACTTAAGGACAG 57.335 33.333 7.53 0.00 44.60 3.51
185 186 5.529800 TCAAGTTAAACACTTAAGGACAGGC 59.470 40.000 7.53 0.00 44.60 4.85
193 206 3.882888 CACTTAAGGACAGGCTCAACAAA 59.117 43.478 7.53 0.00 0.00 2.83
198 211 2.092429 AGGACAGGCTCAACAAACTTCA 60.092 45.455 0.00 0.00 0.00 3.02
203 216 3.567164 CAGGCTCAACAAACTTCATGACT 59.433 43.478 0.00 0.00 0.00 3.41
209 222 2.863809 ACAAACTTCATGACTCCCCAC 58.136 47.619 0.00 0.00 0.00 4.61
214 227 2.915604 ACTTCATGACTCCCCACTGAAT 59.084 45.455 0.00 0.00 0.00 2.57
268 313 3.012518 CCCCTCACTTGTCAAGCTTATG 58.987 50.000 12.66 3.72 0.00 1.90
288 333 1.732259 GTTGAGCCGAACCACACTATG 59.268 52.381 0.00 0.00 0.00 2.23
291 336 2.094390 TGAGCCGAACCACACTATGTAC 60.094 50.000 0.00 0.00 0.00 2.90
335 381 9.431887 AGTTCAATTCAATTCAATCAATCAAGG 57.568 29.630 0.00 0.00 0.00 3.61
337 383 9.647797 TTCAATTCAATTCAATCAATCAAGGAG 57.352 29.630 0.00 0.00 0.00 3.69
338 384 8.255206 TCAATTCAATTCAATCAATCAAGGAGG 58.745 33.333 0.00 0.00 0.00 4.30
339 385 5.587388 TCAATTCAATCAATCAAGGAGGC 57.413 39.130 0.00 0.00 0.00 4.70
340 386 5.266788 TCAATTCAATCAATCAAGGAGGCT 58.733 37.500 0.00 0.00 0.00 4.58
379 429 2.496291 CGGGCCTCGGTAACCCTAG 61.496 68.421 0.84 0.00 41.86 3.02
383 434 1.630223 GCCTCGGTAACCCTAGCTAT 58.370 55.000 0.00 0.00 0.00 2.97
408 465 9.603189 ATTCCTAATTAGTACTGTAGCAGGTAT 57.397 33.333 11.50 2.72 35.51 2.73
438 495 1.074872 GTTTCGGTTCGGCGAGGTAG 61.075 60.000 10.46 3.52 0.00 3.18
455 512 5.141182 GAGGTAGAGAGAGAGAGAGAGAGA 58.859 50.000 0.00 0.00 0.00 3.10
564 622 2.572284 CCCGAACGAGACCAGACC 59.428 66.667 0.00 0.00 0.00 3.85
602 660 1.589414 AAAGGAGGAGGTAGCATGCT 58.411 50.000 25.99 25.99 0.00 3.79
648 706 1.570979 GGATTTCATCCTCCCCCTTGT 59.429 52.381 0.00 0.00 46.19 3.16
658 716 1.971695 CCCCCTTGTTGGTTCTCGC 60.972 63.158 0.00 0.00 0.00 5.03
663 721 0.600255 CTTGTTGGTTCTCGCGGAGT 60.600 55.000 6.13 0.00 0.00 3.85
694 1041 2.033299 GTGTTGCTGCTGCTGTTTCTTA 59.967 45.455 17.00 0.00 40.48 2.10
699 1046 3.569277 TGCTGCTGCTGTTTCTTATTTGA 59.431 39.130 17.00 0.00 40.48 2.69
700 1047 4.037803 TGCTGCTGCTGTTTCTTATTTGAA 59.962 37.500 17.00 0.00 40.48 2.69
798 1145 4.148563 AGATGACACGATACATACGCTC 57.851 45.455 0.00 0.00 0.00 5.03
799 1146 2.378507 TGACACGATACATACGCTCG 57.621 50.000 0.00 0.00 38.34 5.03
800 1147 1.043224 GACACGATACATACGCTCGC 58.957 55.000 0.00 0.00 35.89 5.03
801 1148 0.661552 ACACGATACATACGCTCGCT 59.338 50.000 0.00 0.00 35.89 4.93
812 1159 2.896443 GCTCGCTAGAAGCCCAGT 59.104 61.111 6.33 0.00 38.18 4.00
845 1194 6.767423 GTCTCGGAAAGAGGTAGTAGTAGATT 59.233 42.308 0.00 0.00 46.82 2.40
884 1233 1.406205 CCGGGCTTCTTCTTCTTCTCC 60.406 57.143 0.00 0.00 0.00 3.71
886 1235 1.912731 GGGCTTCTTCTTCTTCTCCCT 59.087 52.381 0.00 0.00 0.00 4.20
887 1236 3.108376 GGGCTTCTTCTTCTTCTCCCTA 58.892 50.000 0.00 0.00 0.00 3.53
1265 1617 4.825422 TGGAGCTCACTCAATCTAAACTG 58.175 43.478 17.19 0.00 45.42 3.16
1271 1623 4.985538 TCACTCAATCTAAACTGGCCTTT 58.014 39.130 3.32 0.00 0.00 3.11
1280 1632 2.595124 AACTGGCCTTTTGTTTTCCG 57.405 45.000 3.32 0.00 0.00 4.30
1433 1787 1.682854 TCCAACCTCGACTACAACGTT 59.317 47.619 0.00 0.00 0.00 3.99
1586 1940 4.141846 ACATCGTAATCCACAGCTTCATCT 60.142 41.667 0.00 0.00 0.00 2.90
1607 1961 6.688073 TCTTGAAGAAGGATTAGACAAGGT 57.312 37.500 0.00 0.00 34.52 3.50
1700 2065 5.155278 ACTGTCCAACCATACATTACGAA 57.845 39.130 0.00 0.00 0.00 3.85
1728 2093 3.654414 AGGCTCCGAATTATTTAGCTCG 58.346 45.455 0.00 0.00 33.67 5.03
1875 2241 3.308438 TTAACTACGACAAGAGTGGGC 57.692 47.619 0.00 0.00 0.00 5.36
2071 2444 3.057315 GGTACAACAATGTGCAGCTTGAT 60.057 43.478 13.60 0.97 43.19 2.57
2128 2501 3.884774 GAGGCACCACCACCACCA 61.885 66.667 0.00 0.00 43.14 4.17
2129 2502 4.204028 AGGCACCACCACCACCAC 62.204 66.667 0.00 0.00 43.14 4.16
2537 2910 6.112734 TGTGGTACTTCTAATGCATTACTGG 58.887 40.000 15.21 6.46 0.00 4.00
2538 2911 6.113411 GTGGTACTTCTAATGCATTACTGGT 58.887 40.000 15.21 14.45 0.00 4.00
2539 2912 6.258068 GTGGTACTTCTAATGCATTACTGGTC 59.742 42.308 15.21 5.01 0.00 4.02
2540 2913 6.156256 TGGTACTTCTAATGCATTACTGGTCT 59.844 38.462 15.21 0.00 0.00 3.85
2619 2993 1.061131 CGAAACTAGCCAACATGAGCG 59.939 52.381 0.00 0.00 0.00 5.03
2683 3057 1.401905 GGGAGCTTAAAATGAGTGCGG 59.598 52.381 0.00 0.00 0.00 5.69
2685 3059 2.084546 GAGCTTAAAATGAGTGCGGGT 58.915 47.619 0.00 0.00 0.00 5.28
2834 3215 2.197465 CCCCTAAGCTCCTAACCTTGT 58.803 52.381 0.00 0.00 0.00 3.16
2857 3238 2.969821 TTTCTTGGGCTAGCAAAGGA 57.030 45.000 22.30 15.17 0.00 3.36
2872 3253 6.603940 AGCAAAGGAAACCAAATATGCTTA 57.396 33.333 0.00 0.00 39.69 3.09
3001 3383 4.994220 TCGTGTTGCGCTAATTCTTTTA 57.006 36.364 9.73 0.00 41.07 1.52
3023 3405 5.429957 AGAAGATTTTGAGCAAGTGACAC 57.570 39.130 0.00 0.00 0.00 3.67
3371 3756 3.393089 AGACAAATGAAGCGTCTGTCT 57.607 42.857 14.41 14.41 41.40 3.41
3391 3776 6.264832 TGTCTTTTGTTGTGTGATGATCAAC 58.735 36.000 0.00 0.00 40.91 3.18
3520 3905 8.260818 ACATTTGCTGTCTGTTGATAGTAGTAT 58.739 33.333 0.00 0.00 34.46 2.12
3737 4150 0.829990 CTGCTCTTCTTCCTCCTCCC 59.170 60.000 0.00 0.00 0.00 4.30
3774 4187 4.899239 CTCCCTCGCATGGCCGAC 62.899 72.222 0.00 0.00 33.12 4.79
3787 4200 1.006571 GCCGACGAAGGACTTGACA 60.007 57.895 0.00 0.00 0.00 3.58
3845 4261 2.045143 GGTCGACGTCCTCCTCCT 60.045 66.667 10.58 0.00 0.00 3.69
3846 4262 2.114051 GGTCGACGTCCTCCTCCTC 61.114 68.421 10.58 0.00 0.00 3.71
3850 4266 2.363147 ACGTCCTCCTCCTCCAGC 60.363 66.667 0.00 0.00 0.00 4.85
3851 4267 2.363018 CGTCCTCCTCCTCCAGCA 60.363 66.667 0.00 0.00 0.00 4.41
3853 4269 1.305718 GTCCTCCTCCTCCAGCACT 60.306 63.158 0.00 0.00 0.00 4.40
3854 4270 1.305633 TCCTCCTCCTCCAGCACTG 60.306 63.158 0.00 0.00 0.00 3.66
3855 4271 2.583520 CTCCTCCTCCAGCACTGC 59.416 66.667 0.00 0.00 0.00 4.40
3975 4391 1.617018 TAGAGCCCAATCAGCTGCGT 61.617 55.000 9.47 0.00 41.75 5.24
4045 4461 2.032981 CGCCAGCCACAGAAAGTTT 58.967 52.632 0.00 0.00 0.00 2.66
4081 4497 1.443872 CGCCGCGTACTTCTTCAGT 60.444 57.895 4.92 0.00 39.87 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.097554 CCTTACACCCACCATATTTTAATGCA 59.902 38.462 0.00 0.00 0.00 3.96
1 2 6.097696 ACCTTACACCCACCATATTTTAATGC 59.902 38.462 0.00 0.00 0.00 3.56
2 3 7.654022 ACCTTACACCCACCATATTTTAATG 57.346 36.000 0.00 0.00 0.00 1.90
6 7 8.507761 ACATATACCTTACACCCACCATATTTT 58.492 33.333 0.00 0.00 0.00 1.82
7 8 8.052621 ACATATACCTTACACCCACCATATTT 57.947 34.615 0.00 0.00 0.00 1.40
8 9 7.526526 CGACATATACCTTACACCCACCATATT 60.527 40.741 0.00 0.00 0.00 1.28
9 10 6.070995 CGACATATACCTTACACCCACCATAT 60.071 42.308 0.00 0.00 0.00 1.78
10 11 5.244402 CGACATATACCTTACACCCACCATA 59.756 44.000 0.00 0.00 0.00 2.74
11 12 4.039973 CGACATATACCTTACACCCACCAT 59.960 45.833 0.00 0.00 0.00 3.55
12 13 3.385433 CGACATATACCTTACACCCACCA 59.615 47.826 0.00 0.00 0.00 4.17
13 14 3.638160 TCGACATATACCTTACACCCACC 59.362 47.826 0.00 0.00 0.00 4.61
14 15 4.098349 TGTCGACATATACCTTACACCCAC 59.902 45.833 15.76 0.00 0.00 4.61
15 16 4.279982 TGTCGACATATACCTTACACCCA 58.720 43.478 15.76 0.00 0.00 4.51
16 17 4.261909 CCTGTCGACATATACCTTACACCC 60.262 50.000 20.40 0.00 0.00 4.61
17 18 4.581824 TCCTGTCGACATATACCTTACACC 59.418 45.833 20.40 0.00 0.00 4.16
18 19 5.762825 TCCTGTCGACATATACCTTACAC 57.237 43.478 20.40 0.00 0.00 2.90
19 20 6.239204 CCAATCCTGTCGACATATACCTTACA 60.239 42.308 20.40 0.00 0.00 2.41
20 21 6.157211 CCAATCCTGTCGACATATACCTTAC 58.843 44.000 20.40 0.00 0.00 2.34
21 22 5.836898 ACCAATCCTGTCGACATATACCTTA 59.163 40.000 20.40 0.00 0.00 2.69
22 23 4.654262 ACCAATCCTGTCGACATATACCTT 59.346 41.667 20.40 4.58 0.00 3.50
23 24 4.039245 CACCAATCCTGTCGACATATACCT 59.961 45.833 20.40 0.00 0.00 3.08
24 25 4.307432 CACCAATCCTGTCGACATATACC 58.693 47.826 20.40 0.00 0.00 2.73
25 26 3.741344 GCACCAATCCTGTCGACATATAC 59.259 47.826 20.40 0.00 0.00 1.47
26 27 3.641436 AGCACCAATCCTGTCGACATATA 59.359 43.478 20.40 7.90 0.00 0.86
27 28 2.435805 AGCACCAATCCTGTCGACATAT 59.564 45.455 20.40 12.93 0.00 1.78
28 29 1.831106 AGCACCAATCCTGTCGACATA 59.169 47.619 20.40 11.01 0.00 2.29
29 30 0.615331 AGCACCAATCCTGTCGACAT 59.385 50.000 20.40 0.53 0.00 3.06
30 31 0.320683 CAGCACCAATCCTGTCGACA 60.321 55.000 18.88 18.88 0.00 4.35
31 32 0.037326 TCAGCACCAATCCTGTCGAC 60.037 55.000 9.11 9.11 0.00 4.20
32 33 0.684535 TTCAGCACCAATCCTGTCGA 59.315 50.000 0.00 0.00 0.00 4.20
33 34 0.798776 GTTCAGCACCAATCCTGTCG 59.201 55.000 0.00 0.00 0.00 4.35
34 35 1.168714 GGTTCAGCACCAATCCTGTC 58.831 55.000 0.00 0.00 46.42 3.51
35 36 3.346426 GGTTCAGCACCAATCCTGT 57.654 52.632 0.00 0.00 46.42 4.00
44 45 6.986817 ACATACATATTCTAGTGGTTCAGCAC 59.013 38.462 0.66 0.66 0.00 4.40
45 46 7.124573 ACATACATATTCTAGTGGTTCAGCA 57.875 36.000 0.00 0.00 0.00 4.41
46 47 8.979574 GTAACATACATATTCTAGTGGTTCAGC 58.020 37.037 0.00 0.00 0.00 4.26
47 48 9.477484 GGTAACATACATATTCTAGTGGTTCAG 57.523 37.037 0.00 0.00 0.00 3.02
48 49 8.139350 CGGTAACATACATATTCTAGTGGTTCA 58.861 37.037 0.00 0.00 0.00 3.18
49 50 8.139989 ACGGTAACATACATATTCTAGTGGTTC 58.860 37.037 0.00 0.00 0.00 3.62
50 51 8.015185 ACGGTAACATACATATTCTAGTGGTT 57.985 34.615 0.00 0.00 0.00 3.67
51 52 7.592885 ACGGTAACATACATATTCTAGTGGT 57.407 36.000 0.00 0.00 0.00 4.16
52 53 7.095774 GCAACGGTAACATACATATTCTAGTGG 60.096 40.741 0.00 0.00 0.00 4.00
53 54 7.436970 TGCAACGGTAACATACATATTCTAGTG 59.563 37.037 0.00 0.00 0.00 2.74
54 55 7.494211 TGCAACGGTAACATACATATTCTAGT 58.506 34.615 0.00 0.00 0.00 2.57
55 56 7.940178 TGCAACGGTAACATACATATTCTAG 57.060 36.000 0.00 0.00 0.00 2.43
56 57 8.133754 GTTGCAACGGTAACATACATATTCTA 57.866 34.615 14.90 0.00 39.17 2.10
57 58 7.011828 GTTGCAACGGTAACATACATATTCT 57.988 36.000 14.90 0.00 39.17 2.40
77 78 1.153842 GCACCTAATTGCCCGTTGC 60.154 57.895 0.00 0.00 36.42 4.17
78 79 0.887933 AAGCACCTAATTGCCCGTTG 59.112 50.000 0.00 0.00 44.14 4.10
79 80 1.173913 GAAGCACCTAATTGCCCGTT 58.826 50.000 0.00 0.00 44.14 4.44
80 81 0.037590 TGAAGCACCTAATTGCCCGT 59.962 50.000 0.00 0.00 44.14 5.28
81 82 1.392589 ATGAAGCACCTAATTGCCCG 58.607 50.000 0.00 0.00 44.14 6.13
82 83 3.820557 TCTATGAAGCACCTAATTGCCC 58.179 45.455 0.00 0.00 44.14 5.36
83 84 6.211515 CAAATCTATGAAGCACCTAATTGCC 58.788 40.000 0.00 0.00 44.14 4.52
84 85 5.689068 GCAAATCTATGAAGCACCTAATTGC 59.311 40.000 0.00 0.00 43.34 3.56
85 86 6.798482 TGCAAATCTATGAAGCACCTAATTG 58.202 36.000 0.00 0.00 0.00 2.32
86 87 7.035840 CTGCAAATCTATGAAGCACCTAATT 57.964 36.000 0.00 0.00 0.00 1.40
87 88 6.630444 CTGCAAATCTATGAAGCACCTAAT 57.370 37.500 0.00 0.00 0.00 1.73
95 96 5.556355 TTGACAGCTGCAAATCTATGAAG 57.444 39.130 15.27 0.00 0.00 3.02
96 97 5.963176 TTTGACAGCTGCAAATCTATGAA 57.037 34.783 23.52 7.50 30.87 2.57
97 98 6.519679 AATTTGACAGCTGCAAATCTATGA 57.480 33.333 31.14 15.56 43.13 2.15
98 99 6.035650 CCAAATTTGACAGCTGCAAATCTATG 59.964 38.462 31.14 27.92 43.13 2.23
99 100 6.103997 CCAAATTTGACAGCTGCAAATCTAT 58.896 36.000 31.14 22.88 43.13 1.98
100 101 5.010922 ACCAAATTTGACAGCTGCAAATCTA 59.989 36.000 31.14 16.83 43.13 1.98
101 102 4.202284 ACCAAATTTGACAGCTGCAAATCT 60.202 37.500 31.14 22.96 43.13 2.40
102 103 4.060205 ACCAAATTTGACAGCTGCAAATC 58.940 39.130 31.14 18.00 43.13 2.17
103 104 3.810941 CACCAAATTTGACAGCTGCAAAT 59.189 39.130 28.28 28.28 45.14 2.32
104 105 3.196463 CACCAAATTTGACAGCTGCAAA 58.804 40.909 26.99 26.99 39.31 3.68
105 106 2.823984 CACCAAATTTGACAGCTGCAA 58.176 42.857 19.86 15.94 0.00 4.08
106 107 1.538634 GCACCAAATTTGACAGCTGCA 60.539 47.619 19.86 10.30 0.00 4.41
107 108 1.142474 GCACCAAATTTGACAGCTGC 58.858 50.000 19.86 12.74 0.00 5.25
108 109 2.806608 AGCACCAAATTTGACAGCTG 57.193 45.000 19.86 13.48 31.60 4.24
109 110 2.694628 TGAAGCACCAAATTTGACAGCT 59.305 40.909 19.86 19.62 33.22 4.24
110 111 3.096489 TGAAGCACCAAATTTGACAGC 57.904 42.857 19.86 17.89 0.00 4.40
111 112 4.873817 TCATGAAGCACCAAATTTGACAG 58.126 39.130 19.86 9.51 0.00 3.51
112 113 4.933505 TCATGAAGCACCAAATTTGACA 57.066 36.364 19.86 9.43 0.00 3.58
113 114 6.601741 TTTTCATGAAGCACCAAATTTGAC 57.398 33.333 19.86 8.52 0.00 3.18
114 115 7.041235 GGATTTTTCATGAAGCACCAAATTTGA 60.041 33.333 19.86 0.00 0.00 2.69
115 116 7.079475 GGATTTTTCATGAAGCACCAAATTTG 58.921 34.615 11.40 11.40 0.00 2.32
116 117 6.771749 TGGATTTTTCATGAAGCACCAAATTT 59.228 30.769 8.41 0.00 0.00 1.82
117 118 6.297582 TGGATTTTTCATGAAGCACCAAATT 58.702 32.000 8.41 0.00 0.00 1.82
118 119 5.867330 TGGATTTTTCATGAAGCACCAAAT 58.133 33.333 12.63 12.63 0.00 2.32
119 120 5.287674 TGGATTTTTCATGAAGCACCAAA 57.712 34.783 8.41 6.48 0.00 3.28
120 121 4.952071 TGGATTTTTCATGAAGCACCAA 57.048 36.364 8.41 0.00 0.00 3.67
121 122 4.800249 GCTTGGATTTTTCATGAAGCACCA 60.800 41.667 8.41 13.33 36.62 4.17
122 123 3.681417 GCTTGGATTTTTCATGAAGCACC 59.319 43.478 8.41 11.13 36.62 5.01
123 124 4.309099 TGCTTGGATTTTTCATGAAGCAC 58.691 39.130 8.41 2.39 40.53 4.40
124 125 4.309099 GTGCTTGGATTTTTCATGAAGCA 58.691 39.130 8.41 9.17 42.54 3.91
125 126 3.681417 GGTGCTTGGATTTTTCATGAAGC 59.319 43.478 8.41 6.53 37.04 3.86
126 127 4.020839 AGGGTGCTTGGATTTTTCATGAAG 60.021 41.667 8.41 0.00 0.00 3.02
127 128 3.903090 AGGGTGCTTGGATTTTTCATGAA 59.097 39.130 3.38 3.38 0.00 2.57
128 129 3.258872 CAGGGTGCTTGGATTTTTCATGA 59.741 43.478 0.00 0.00 0.00 3.07
129 130 3.592059 CAGGGTGCTTGGATTTTTCATG 58.408 45.455 0.00 0.00 0.00 3.07
130 131 2.568509 CCAGGGTGCTTGGATTTTTCAT 59.431 45.455 0.00 0.00 37.96 2.57
131 132 1.969923 CCAGGGTGCTTGGATTTTTCA 59.030 47.619 0.00 0.00 37.96 2.69
132 133 1.970640 ACCAGGGTGCTTGGATTTTTC 59.029 47.619 0.00 0.00 39.08 2.29
133 134 2.101640 ACCAGGGTGCTTGGATTTTT 57.898 45.000 0.00 0.00 39.08 1.94
134 135 1.970640 GAACCAGGGTGCTTGGATTTT 59.029 47.619 0.00 0.00 39.08 1.82
135 136 1.147817 AGAACCAGGGTGCTTGGATTT 59.852 47.619 0.00 0.00 39.08 2.17
136 137 0.779997 AGAACCAGGGTGCTTGGATT 59.220 50.000 0.00 0.00 39.08 3.01
137 138 1.561542 CTAGAACCAGGGTGCTTGGAT 59.438 52.381 3.82 0.00 39.08 3.41
143 144 3.350219 TGAAATCTAGAACCAGGGTGC 57.650 47.619 0.00 0.00 0.00 5.01
165 166 5.061179 TGAGCCTGTCCTTAAGTGTTTAAC 58.939 41.667 0.97 0.00 0.00 2.01
170 171 2.438021 TGTTGAGCCTGTCCTTAAGTGT 59.562 45.455 0.97 0.00 0.00 3.55
178 179 2.297701 TGAAGTTTGTTGAGCCTGTCC 58.702 47.619 0.00 0.00 0.00 4.02
179 180 3.565482 TCATGAAGTTTGTTGAGCCTGTC 59.435 43.478 0.00 0.00 0.00 3.51
180 181 3.316308 GTCATGAAGTTTGTTGAGCCTGT 59.684 43.478 0.00 0.00 0.00 4.00
181 182 3.567164 AGTCATGAAGTTTGTTGAGCCTG 59.433 43.478 0.00 0.00 0.00 4.85
182 183 3.817647 GAGTCATGAAGTTTGTTGAGCCT 59.182 43.478 0.00 0.00 0.00 4.58
183 184 3.057946 GGAGTCATGAAGTTTGTTGAGCC 60.058 47.826 0.00 0.00 0.00 4.70
185 186 3.503748 GGGGAGTCATGAAGTTTGTTGAG 59.496 47.826 0.00 0.00 0.00 3.02
193 206 2.030027 TCAGTGGGGAGTCATGAAGT 57.970 50.000 0.00 0.00 0.00 3.01
198 211 3.875369 GCTCAAATTCAGTGGGGAGTCAT 60.875 47.826 0.00 0.00 0.00 3.06
203 216 1.144708 TGTGCTCAAATTCAGTGGGGA 59.855 47.619 0.00 0.00 0.00 4.81
209 222 3.909776 TTCAGCTGTGCTCAAATTCAG 57.090 42.857 14.67 0.00 36.40 3.02
214 227 4.082300 TCAAGTTTTTCAGCTGTGCTCAAA 60.082 37.500 14.67 3.36 36.40 2.69
268 313 1.732259 CATAGTGTGGTTCGGCTCAAC 59.268 52.381 0.00 0.00 0.00 3.18
288 333 3.735591 TGTACTTTGTTGCCTCCTGTAC 58.264 45.455 0.00 0.00 0.00 2.90
291 336 2.851195 ACTGTACTTTGTTGCCTCCTG 58.149 47.619 0.00 0.00 0.00 3.86
334 380 0.178068 TAGATTCGCAACCAGCCTCC 59.822 55.000 0.00 0.00 41.38 4.30
335 381 1.134670 ACTAGATTCGCAACCAGCCTC 60.135 52.381 0.00 0.00 41.38 4.70
337 383 2.596904 TACTAGATTCGCAACCAGCC 57.403 50.000 0.00 0.00 41.38 4.85
338 384 2.221981 GCATACTAGATTCGCAACCAGC 59.778 50.000 0.00 0.00 40.87 4.85
339 385 2.802816 GGCATACTAGATTCGCAACCAG 59.197 50.000 0.00 0.00 0.00 4.00
340 386 2.484770 GGGCATACTAGATTCGCAACCA 60.485 50.000 0.00 0.00 0.00 3.67
379 429 8.030106 CCTGCTACAGTACTAATTAGGAATAGC 58.970 40.741 20.40 20.40 33.53 2.97
407 464 5.924825 GCCGAACCGAAACTTGATATACTAT 59.075 40.000 0.00 0.00 0.00 2.12
408 465 5.284079 GCCGAACCGAAACTTGATATACTA 58.716 41.667 0.00 0.00 0.00 1.82
438 495 7.030165 CGTATGTATCTCTCTCTCTCTCTCTC 58.970 46.154 0.00 0.00 0.00 3.20
455 512 1.276622 GGCAGGATCCCCGTATGTAT 58.723 55.000 8.55 0.00 37.58 2.29
602 660 3.265489 AGAAGGAATTCACCCTGGGTAA 58.735 45.455 20.09 13.45 32.11 2.85
631 689 1.077005 CCAACAAGGGGGAGGATGAAA 59.923 52.381 0.00 0.00 0.00 2.69
642 700 2.325082 CCGCGAGAACCAACAAGGG 61.325 63.158 8.23 0.00 43.89 3.95
646 704 1.006571 GACTCCGCGAGAACCAACA 60.007 57.895 8.23 0.00 33.32 3.33
648 706 1.592400 ATCGACTCCGCGAGAACCAA 61.592 55.000 8.23 0.00 44.26 3.67
658 716 0.670546 AACACCAGCAATCGACTCCG 60.671 55.000 0.00 0.00 37.07 4.63
663 721 1.855213 GCAGCAACACCAGCAATCGA 61.855 55.000 0.00 0.00 0.00 3.59
694 1041 6.377327 ACAATCTATCCGCGATTTTCAAAT 57.623 33.333 8.23 0.00 0.00 2.32
699 1046 4.634004 TGACAACAATCTATCCGCGATTTT 59.366 37.500 8.23 0.00 0.00 1.82
700 1047 4.188462 TGACAACAATCTATCCGCGATTT 58.812 39.130 8.23 0.00 0.00 2.17
798 1145 1.142748 CTGGACTGGGCTTCTAGCG 59.857 63.158 0.00 0.00 43.62 4.26
799 1146 1.153269 GCTGGACTGGGCTTCTAGC 60.153 63.158 4.51 4.51 39.96 3.42
800 1147 1.524482 GGCTGGACTGGGCTTCTAG 59.476 63.158 0.00 0.00 0.00 2.43
801 1148 1.995626 GGGCTGGACTGGGCTTCTA 60.996 63.158 0.00 0.00 0.00 2.10
826 1173 5.221481 GGGCCAATCTACTACTACCTCTTTC 60.221 48.000 4.39 0.00 0.00 2.62
827 1174 4.654724 GGGCCAATCTACTACTACCTCTTT 59.345 45.833 4.39 0.00 0.00 2.52
828 1175 4.224762 GGGCCAATCTACTACTACCTCTT 58.775 47.826 4.39 0.00 0.00 2.85
829 1176 3.751245 CGGGCCAATCTACTACTACCTCT 60.751 52.174 4.39 0.00 0.00 3.69
884 1233 6.949352 ATTAATTGGCACACAAGAGATAGG 57.051 37.500 0.00 0.00 43.48 2.57
886 1235 8.773645 CGATAATTAATTGGCACACAAGAGATA 58.226 33.333 11.05 0.00 43.48 1.98
887 1236 7.642669 CGATAATTAATTGGCACACAAGAGAT 58.357 34.615 11.05 0.00 43.48 2.75
1216 1568 5.823570 TCTCTGAATTAGGAGGAGTAGTTCG 59.176 44.000 7.13 0.00 0.00 3.95
1265 1617 1.369692 CCCCGGAAAACAAAAGGCC 59.630 57.895 0.73 0.00 0.00 5.19
1586 1940 7.166167 GGTAACCTTGTCTAATCCTTCTTCAA 58.834 38.462 0.00 0.00 0.00 2.69
1597 1951 9.969001 AGCTAAATAATTGGTAACCTTGTCTAA 57.031 29.630 0.00 0.00 0.00 2.10
1700 2065 6.651225 GCTAAATAATTCGGAGCCTTGTCTAT 59.349 38.462 0.00 0.00 0.00 1.98
1728 2093 1.079503 CTGGTTGCTCTAAAGGCGTC 58.920 55.000 0.00 0.00 0.00 5.19
1875 2241 1.202348 GGGGCTGAAAACCTTTGATCG 59.798 52.381 0.00 0.00 0.00 3.69
2071 2444 4.837860 ACCTCAATTTTCATAGGTTTGCCA 59.162 37.500 0.00 0.00 39.32 4.92
2128 2501 7.123697 GGGGTATTCAAAGTAAAAATAGCAGGT 59.876 37.037 0.00 0.00 35.89 4.00
2129 2502 7.489160 GGGGTATTCAAAGTAAAAATAGCAGG 58.511 38.462 0.00 0.00 35.89 4.85
2130 2503 7.066525 TCGGGGTATTCAAAGTAAAAATAGCAG 59.933 37.037 0.00 0.00 35.89 4.24
2256 2629 7.173390 GGATTGTGCTTAGAAGACAGTTTTAGT 59.827 37.037 0.00 0.00 0.00 2.24
2537 2910 5.807011 ACAAAACAATGCTGAACTTCAAGAC 59.193 36.000 0.00 0.00 0.00 3.01
2538 2911 5.964758 ACAAAACAATGCTGAACTTCAAGA 58.035 33.333 0.00 0.00 0.00 3.02
2539 2912 6.651755 AACAAAACAATGCTGAACTTCAAG 57.348 33.333 0.00 0.00 0.00 3.02
2540 2913 8.715191 ATAAACAAAACAATGCTGAACTTCAA 57.285 26.923 0.00 0.00 0.00 2.69
2619 2993 6.599638 ACATACCCTTGCTTCTCAAAGTTATC 59.400 38.462 0.00 0.00 34.79 1.75
2695 3069 2.048503 GGTCCTGGTCAACGTCCG 60.049 66.667 0.00 0.00 0.00 4.79
2702 3076 0.696143 TTTGGTCCTGGTCCTGGTCA 60.696 55.000 14.11 10.99 0.00 4.02
2834 3215 5.329399 TCCTTTGCTAGCCCAAGAAATTTA 58.671 37.500 20.35 0.00 0.00 1.40
2872 3253 9.559958 CGCTAATTGAAGTGTAATCTTTTTGAT 57.440 29.630 0.00 0.00 36.89 2.57
2979 3361 8.038902 CTTCTAAAAGAATTAGCGCAACACGAA 61.039 37.037 11.47 0.00 37.53 3.85
3001 3383 4.883585 TGTGTCACTTGCTCAAAATCTTCT 59.116 37.500 4.27 0.00 0.00 2.85
3023 3405 6.524734 TGCAAATATCCAGTACCACTAGATG 58.475 40.000 0.00 0.00 29.64 2.90
3145 3527 2.282110 CCACGCCCAACATCACCA 60.282 61.111 0.00 0.00 0.00 4.17
3371 3756 5.033507 CACGTTGATCATCACACAACAAAA 58.966 37.500 0.00 0.00 42.37 2.44
3520 3905 8.307483 TGTTCAAAGGAAAAACAAACACTCATA 58.693 29.630 0.00 0.00 34.13 2.15
3774 4187 1.566018 GGCGGTTGTCAAGTCCTTCG 61.566 60.000 0.00 0.00 0.00 3.79
3787 4200 3.958147 CTGCGAGGACATGGCGGTT 62.958 63.158 0.00 0.00 34.50 4.44
3845 4261 3.324930 CCTGGAGGCAGTGCTGGA 61.325 66.667 16.11 0.00 37.77 3.86
3846 4262 4.421515 CCCTGGAGGCAGTGCTGG 62.422 72.222 16.11 9.44 35.58 4.85
3975 4391 2.588439 GCAGCCTGAGCAGGATCA 59.412 61.111 20.29 0.00 45.52 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.